Citrus Sinensis ID: 017777
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | 2.2.26 [Sep-21-2011] | |||||||
| P46484 | 366 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 1.0 | 0.800 | 1e-179 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.991 | 0.994 | 0.813 | 1e-179 | |
| Q8GU25 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.991 | 0.994 | 0.799 | 1e-178 | |
| Q00763 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.997 | 1.0 | 0.792 | 1e-177 | |
| Q43046 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.997 | 1.0 | 0.789 | 1e-176 | |
| O23760 | 370 | Caffeic acid 3-O-methyltr | N/A | no | 1.0 | 0.989 | 0.778 | 1e-174 | |
| Q43047 | 364 | Caffeic acid 3-O-methyltr | N/A | no | 0.994 | 1.0 | 0.778 | 1e-170 | |
| P28002 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.991 | 0.994 | 0.774 | 1e-169 | |
| Q41086 | 364 | Caffeic acid 3-O-methyltr | N/A | no | 0.994 | 1.0 | 0.770 | 1e-169 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.983 | 0.997 | 0.761 | 1e-167 |
| >sp|P46484|COMT1_EUCGU Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 293/366 (80%), Positives = 329/366 (89%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST SETQ++P Q SDEEANL AMQL SASVLPMVLK+AIELDLLEI+AKAGP AF+SP
Sbjct: 1 MGSTGSETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSP 60
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
++A+QLPT+NP+A +LDRI RLLASYSVL C+LRNLPDGKVERLYGLAPVCKFL KNE
Sbjct: 61 GEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGKVERLYGLAPVCKFLVKNE 120
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ L LMNQDK+LMESWYYLKDAVLEGGIPFNKAYGM AF+YHG D RFNKIFN G
Sbjct: 121 DGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKIFNRG 180
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL +VVDVGGG GA L+MI++KYPS+KGINFDLPHVI+DA
Sbjct: 181 MSDHSTITMKKILETYKGFEGLETVVDVGGGTGAVLSMIVAKYPSMKGINFDLPHVIEDA 240
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P PGV+HVGGDMFVSVPKGDAIF+KWICHDWSD+HC KFLKNCY+ALP GKVIVAE +
Sbjct: 241 PPLPGVKHVGGDMFVSVPKGDAIFMKWICHDWSDDHCAKFLKNCYDALPNIGKVIVAECV 300
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K VIH+DCIMLAHNPGGKERT++EF LAK AGFQGFQV+ AF T++M
Sbjct: 301 LPVYPDTSLATKNVIHIDCIMLAHNPGGKERTQKEFETLAKGAGFQGFQVMCCAFGTHVM 360
Query: 361 EFLKSA 366
EFLK+A
Sbjct: 361 EFLKTA 366
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Eucalyptus gunnii (taxid: 3933) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 627 bits (1617), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/364 (81%), Positives = 326/364 (89%), Gaps = 1/364 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ++P Q SDEEANL AMQL SASVLPMVLK+AIELDLLEI+AKAGP F+SP
Sbjct: 1 MGSTG-ETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
DIASQLPTKNPDA +LDR+LRLLASYS+L SLR L DGKVERLYGL PVCKFLTKNE
Sbjct: 60 TDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
+GV+++ LCLMNQDKVL+ESWY+LKDAVLEGGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 120 EGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
M+ HSTITMKKILE YKGFEGL SVVDVGGG GA LNMI+SKYPSIKGINFDLPHVI+DA
Sbjct: 180 MADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P +PGVEHVGGDMFVSVPKGDAIF+KWICHDWSDEHC+KFLKNCY ALP NGKVI+ E I
Sbjct: 240 PQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PD+SLA+K V+H+D IMLAHNPGGKERTEQEF+ALAK AGFQGF V SAFNTY++
Sbjct: 300 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVI 359
Query: 361 EFLK 364
EFLK
Sbjct: 360 EFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 623 bits (1607), Expect = e-178, Method: Compositional matrix adjust.
Identities = 291/364 (79%), Positives = 327/364 (89%), Gaps = 1/364 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ++P Q SDEEANL AMQL SASVLPMVLK+AIELDLLEI+AKAGP AF+SP
Sbjct: 1 MGSTG-ETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
D+ASQLPTKNP+A +LDR+LRLLASYS+L SLR LPDGKVERLYGL PVCKFLTKNE
Sbjct: 60 NDLASQLPTKNPEAPVMLDRMLRLLASYSILTYSLRTLPDGKVERLYGLGPVCKFLTKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ LCLMNQDKVL+ESWY+LKDAVL+GGIPFNKAYGM AFDYHG D RFNK+FN G
Sbjct: 120 DGVSIAALCLMNQDKVLVESWYHLKDAVLDGGIPFNKAYGMTAFDYHGTDPRFNKVFNKG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
M+ HSTITMKKILE YKGFEGL S+VDVGGG GA +NMI+SKYPSIKGINFDLPHVI+DA
Sbjct: 180 MADHSTITMKKILETYKGFEGLTSIVDVGGGTGAVVNMIVSKYPSIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P +PGV+HVGGDMFVSVPKGDAIF+KWICHDWSDEHC+KFLKNCY ALP NGKVI+ E I
Sbjct: 240 PQYPGVQHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K V+H+D +MLAHNPGGKERTEQEF ALAK +GFQG +V +AFNTY++
Sbjct: 300 LPVAPDTSLATKGVVHIDVVMLAHNPGGKERTEQEFEALAKGSGFQGIRVACNAFNTYVI 359
Query: 361 EFLK 364
EFLK
Sbjct: 360 EFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Rosa chinensis (taxid: 74649) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 620 bits (1599), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/366 (79%), Positives = 327/366 (89%), Gaps = 1/366 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ++P Q SDEEA+L AMQL SASVLPM+LK+AIELDLLEI+AKAGP AF+S
Sbjct: 1 MGSTG-ETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+IAS LPTKNPDA +LDRILRLLASYS+L CSL++LPDGKVERLYGLAPVCKFLTKNE
Sbjct: 60 SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV++S LCLMNQDKVLMESWYYLKDA+L+GGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL S+VDVGGG GA +N I+SKYPSIKGINFDLPHVI+DA
Sbjct: 180 MSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P++PGVEHVGGDMFVSVPK DA+F+KWICHDWSD HC+KFLKNCY+ALP NGKVI+ E I
Sbjct: 240 PSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K V+HVD IMLAHNPGGKERTE+EF LAK AGFQGF+V+ AFNT+++
Sbjct: 300 LPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVI 359
Query: 361 EFLKSA 366
EF K A
Sbjct: 360 EFRKKA 365
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 289/366 (78%), Positives = 325/366 (88%), Gaps = 1/366 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ++P Q SDEEA+L AMQL SASVLPM+LK+AIELDLLEI+AKAGP AF+S
Sbjct: 1 MGSTG-ETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+IAS LPTKNPDA +LDRILRLLASYS+L CSL++LPDGKVERLYGLAPVCKFLTKNE
Sbjct: 60 SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV++S LCLMNQDKVLMESWYYLKDA+LEGGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL S+VDVGGG GA +N I+SKYPSIKGINFDLPHVI+DA
Sbjct: 180 MSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P++PGVEHVGGDMFVSVP DA+F+KWICHDWSD HC+KFLKNCY+ALP NGKVI+ E I
Sbjct: 240 PSYPGVEHVGGDMFVSVPNADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K V+HVD IMLAHNPGGKERTE+EF LA AGFQGF+V+ AFNT+++
Sbjct: 300 LPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLANGAGFQGFEVMCCAFNTHVI 359
Query: 361 EFLKSA 366
EF K A
Sbjct: 360 EFRKKA 365
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus kitakamiensis (taxid: 34292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 611 bits (1576), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/370 (77%), Positives = 328/370 (88%), Gaps = 4/370 (1%)
Query: 1 MGST-SSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKA---GPDA 56
MGST ++ETQ++P SDEEANL AMQL SASVLPMVLK+AIELD+LEI+AK+ G A
Sbjct: 1 MGSTGNAETQLTPTHVSDEEANLFAMQLASASVLPMVLKAAIELDVLEIMAKSIPHGSGA 60
Query: 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFL 116
++SP +IA+QLPT NPDA +LDR+LRLLASYSV+ CSLR LPDGKVERLYGLAPVCKFL
Sbjct: 61 YISPAEIAAQLPTTNPDAPVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFL 120
Query: 117 TKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKI 176
TKNEDGV+L+ LCLMNQDKVLMESWYYLKDA+L+GGIPFNKAYGM AF+YHG D RFNK+
Sbjct: 121 TKNEDGVSLAPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKV 180
Query: 177 FNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHV 236
FN GMS HSTITMKKI E Y GFE LN++VDVGGG GA L+MI++KYPSIKGINFDLPHV
Sbjct: 181 FNRGMSDHSTITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHV 240
Query: 237 IQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296
I+DAP +PGVEHVGGDMFVSVPKGDAIF+KWICHDWSDEHC+KFLKNCY ALP +GKVIV
Sbjct: 241 IEDAPIYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEHGKVIV 300
Query: 297 AESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFN 356
AE ILP++PD SLA+K VIH+D IMLAHNPGGKERTE+EF ALA AGF+GF+V AFN
Sbjct: 301 AECILPLSPDPSLATKGVIHIDAIMLAHNPGGKERTEKEFEALAIGAGFKGFKVACCAFN 360
Query: 357 TYIMEFLKSA 366
TY+MEFLK+A
Sbjct: 361 TYVMEFLKTA 370
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 599 bits (1545), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/366 (77%), Positives = 323/366 (88%), Gaps = 2/366 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ+SPAQ DEEAN AMQL S+SVLPMVLK+AIELDLLEI+AKAGP A +SP
Sbjct: 1 MGSTG-ETQMSPAQILDEEANF-AMQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLSP 58
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
DIAS LPTKNPDA +LDRILRLLASYS+L CSLR+LPDGKVERLYGLA VCKFLTKNE
Sbjct: 59 SDIASHLPTKNPDAPVMLDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTKNE 118
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV++S LCLMNQDKVLMESWY+LKDA+LEGGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 119 DGVSVSPLCLMNQDKVLMESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 178
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HS + MKKILE+YKGFEGL S+VDVGGG GA ++ I+SKYPSIKGINFDLPHVI DA
Sbjct: 179 MSDHSKMAMKKILESYKGFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADA 238
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
PAFPGVE+VGGDMFVSVPK DA+F+KWICHDWSDEHC++ LKNCY+ALP NGKVI+ E I
Sbjct: 239 PAFPGVENVGGDMFVSVPKADAVFMKWICHDWSDEHCLRLLKNCYDALPENGKVILVECI 298
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K V+HVD IMLAHNPGGKERT++EF LA+ AGF+GF+V+ AFNT+++
Sbjct: 299 LPVAPDTSLATKGVMHVDAIMLAHNPGGKERTDKEFEGLARGAGFKGFEVMCCAFNTHVI 358
Query: 361 EFLKSA 366
EF K A
Sbjct: 359 EFRKQA 364
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus kitakamiensis (taxid: 34292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 595 bits (1535), Expect = e-169, Method: Compositional matrix adjust.
Identities = 282/364 (77%), Positives = 318/364 (87%), Gaps = 1/364 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQI+P SDEEANL AMQL SASVLPM+LKSA+ELDLLEIIAKAGP A +SP
Sbjct: 1 MGSTG-ETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+IASQLPT NPDA +LDR+LRLLA Y +L CS+R DGKV+RLYGLA V K+L KNE
Sbjct: 60 IEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV++S L LMNQDKVLMESWY+LKDAVL+GGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 120 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE Y GFEGL S+VDVGGG GA +N I+SKYP+IKGINFDLPHVI+DA
Sbjct: 180 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P++PGVEHVGGDMFVS+PK DA+F+KWICHDWSDEHC+KFLKNCYEALP NGKVIVAE I
Sbjct: 240 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PD+SLA+K V+H+D IMLAHNPGGKERT++EF LAK AGFQGF+V +AFNTYIM
Sbjct: 300 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 359
Query: 361 EFLK 364
EFLK
Sbjct: 360 EFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q41086|COMT2_POPTM Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 593 bits (1529), Expect = e-169, Method: Compositional matrix adjust.
Identities = 282/366 (77%), Positives = 322/366 (87%), Gaps = 2/366 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ+SPAQ DEEAN A+QL S+SVLPMVLK+AIELDLLEI+AKAGP A + P
Sbjct: 1 MGSTG-ETQMSPAQILDEEANF-ALQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLPP 58
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
DIAS LPTKNP+A +LDRILRLLASYS+L CSLR+LPDGKVERLYGLA VCKFLT+NE
Sbjct: 59 SDIASHLPTKNPNAPVMLDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTRNE 118
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV++S LCLMNQDKVLMESWY+LKDA+LEGGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 119 DGVSVSPLCLMNQDKVLMESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 178
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HS + MKKILE YKGFEGL S+VDVGGG GA ++ I+SKYPSIKGINFDLPHVI DA
Sbjct: 179 MSVHSKMAMKKILETYKGFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADA 238
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
PAFPGVE+VGGDMFVSVPK DA+F+KWICHDWSDEHC+ FLKNCY+ALP NGKVI+ E I
Sbjct: 239 PAFPGVENVGGDMFVSVPKADAVFMKWICHDWSDEHCLTFLKNCYDALPENGKVILVECI 298
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K V+HVD IMLAHNPGGKERT++EF +LA+ AGF+GF+V+ AFNT+++
Sbjct: 299 LPVAPDTSLATKGVMHVDVIMLAHNPGGKERTDREFESLARGAGFKGFEVMCCAFNTHVI 358
Query: 361 EFLKSA 366
EF K A
Sbjct: 359 EFRKKA 364
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 588 bits (1517), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/365 (76%), Positives = 317/365 (86%), Gaps = 5/365 (1%)
Query: 1 MGSTSSETQISPAQGSDEEANLL-AMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMS 59
MGS ++ QI+ SDEE N L AMQL SASVLPMVLKSAIELDLLE+I K+G AF+S
Sbjct: 1 MGSATNTPQIN----SDEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVS 56
Query: 60 PKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119
P D+A+QLPT NPDAH +LDRILRLL SY++L C L+ LPDG VERLYGLAPVCKFLTKN
Sbjct: 57 PVDLAAQLPTTNPDAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKN 116
Query: 120 EDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNN 179
EDGV+++ L LMNQDKVLMESWY+L DAV++GGIPFNKAYGM AF+YHG D RFNK+FN
Sbjct: 117 EDGVSMAPLTLMNQDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQ 176
Query: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239
GMS+HSTITMKKILE Y GF+GL +VVDVGGG GATLNMI+SKYPSIKGINFDLPHVI+D
Sbjct: 177 GMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIED 236
Query: 240 APAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299
AP++PGVEHVGGDMFVSVPKGDAIF+KWICHDWSDEHCVKFLKNCY+ALP NGKVI+AE
Sbjct: 237 APSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAEC 296
Query: 300 ILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYI 359
+LP PDT LA+K V+H+D IMLAHNPGGKERTE+EF+ LAKAAGF+ F A+NT+I
Sbjct: 297 VLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWI 356
Query: 360 MEFLK 364
ME LK
Sbjct: 357 MELLK 361
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| 302171551 | 366 | putative caffeic acid O-methyltransferas | 1.0 | 1.0 | 0.997 | 0.0 | |
| 255569707 | 365 | o-methyltransferase, putative [Ricinus c | 0.997 | 1.0 | 0.833 | 0.0 | |
| 254935147 | 365 | caffeic acid O-methyltransferase [Jatrop | 0.997 | 1.0 | 0.825 | 0.0 | |
| 239586194 | 365 | putative caffeic acid O-methyltransferas | 0.991 | 0.994 | 0.824 | 1e-180 | |
| 284192456 | 366 | caffeic O-methyltransferase1 [Eucalyptus | 1.0 | 1.0 | 0.803 | 1e-179 | |
| 253509569 | 365 | caffeic acid O-methyltransferase 2 [Goss | 0.991 | 0.994 | 0.821 | 1e-178 | |
| 262474806 | 366 | caffeic O-methyltransferase 1 [Eucalyptu | 1.0 | 1.0 | 0.800 | 1e-178 | |
| 1169009 | 366 | RecName: Full=Caffeic acid 3-O-methyltra | 1.0 | 1.0 | 0.800 | 1e-177 | |
| 3913295 | 365 | RecName: Full=Caffeic acid 3-O-methyltra | 0.991 | 0.994 | 0.813 | 1e-177 | |
| 109255537 | 365 | caffeic acid O-methyltransferase [Boehme | 0.991 | 0.994 | 0.815 | 1e-177 |
| >gi|302171551|gb|ADK97702.1| putative caffeic acid O-methyltransferase [Citrus aurantium] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/366 (99%), Positives = 365/366 (99%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP
Sbjct: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
KDIASQLPTKNPDAH VLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE
Sbjct: 61 KDIASQLPTKNPDAHIVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG
Sbjct: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA
Sbjct: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI
Sbjct: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM
Sbjct: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
Query: 361 EFLKSA 366
EFLKSA
Sbjct: 361 EFLKSA 366
|
Source: Citrus aurantium Species: Citrus aurantium Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569707|ref|XP_002525818.1| o-methyltransferase, putative [Ricinus communis] gi|223534882|gb|EEF36570.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/366 (83%), Positives = 330/366 (90%), Gaps = 1/366 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ++P Q SDEEANL AMQL SASVLPMVLKSAIELDLLEI+AKAGP AF+SP
Sbjct: 1 MGSTG-ETQMTPTQVSDEEANLFAMQLASASVLPMVLKSAIELDLLEIMAKAGPSAFLSP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+IASQLPTKNPDA +LDRILRLLASY+VL CSLR LPDGKVERLYGLAPVCKFL KNE
Sbjct: 60 SEIASQLPTKNPDAPVMLDRILRLLASYNVLTCSLRTLPDGKVERLYGLAPVCKFLIKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ LCLMNQDKVLMESWYYLKDAVL GGIPFNKAYGM AFDYHG D RFNK+FN G
Sbjct: 120 DGVSIAPLCLMNQDKVLMESWYYLKDAVLLGGIPFNKAYGMTAFDYHGTDPRFNKVFNRG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL SVVDVGGG GA L+MI+SKYPSIKG NFDLPHVI+DA
Sbjct: 180 MSDHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLSMIVSKYPSIKGTNFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P+FPGVEHVGGDMF SVPKGDAIF+KWICHDWSDEHC+ FLKNCY+ALP NGKVIVAE I
Sbjct: 240 PSFPGVEHVGGDMFASVPKGDAIFMKWICHDWSDEHCLNFLKNCYDALPANGKVIVAECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PD+SLA+K VIH+DCIMLAHNPGGKERTE+EF ALAK AGFQGFQV+ AFN+Y+M
Sbjct: 300 LPVAPDSSLATKGVIHIDCIMLAHNPGGKERTEKEFEALAKGAGFQGFQVMCCAFNSYVM 359
Query: 361 EFLKSA 366
EFLK A
Sbjct: 360 EFLKKA 365
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|254935147|gb|ACT87981.1| caffeic acid O-methyltransferase [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/366 (82%), Positives = 329/366 (89%), Gaps = 1/366 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGS + ETQ++P Q SDEEANL AMQL SASVLPMVLKSAIELDLLEII KAGP AF+SP
Sbjct: 1 MGSIA-ETQMTPTQVSDEEANLFAMQLASASVLPMVLKSAIELDLLEIIGKAGPGAFLSP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
DIASQLPTK+PDA VLDRILRLLASYS+L SLR LPDGKVE+LYGLAPVCKFLTKNE
Sbjct: 60 YDIASQLPTKDPDAPVVLDRILRLLASYSILTYSLRTLPDGKVEKLYGLAPVCKFLTKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ LCLMNQDKVLMESWY+LK+AVLEGGIPFNKAYGM AF+YHG D RFN +FN G
Sbjct: 120 DGVSIAPLCLMNQDKVLMESWYHLKEAVLEGGIPFNKAYGMTAFEYHGTDPRFNTVFNKG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL S+VDVGGG GA +NMI+SKYPS+KGINFDLPHVIQDA
Sbjct: 180 MSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVINMIVSKYPSLKGINFDLPHVIQDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P++PGVEHVGGDMFVSVPK DAIF+KWICHDWSDEHC+KFLKNCY ALP NGKVIVAE I
Sbjct: 240 PSYPGVEHVGGDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYSALPANGKVIVAECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PD SLA+K VIH+DCIMLAHNPGGKER E+EF ALAK AGFQGFQV+ SAFNTY+M
Sbjct: 300 LPVAPDASLATKSVIHIDCIMLAHNPGGKERNEKEFEALAKGAGFQGFQVLCSAFNTYVM 359
Query: 361 EFLKSA 366
EFLK A
Sbjct: 360 EFLKKA 365
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|239586194|gb|ACN41351.2| putative caffeic acid O-methyltransferase [Betula pendula] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/364 (82%), Positives = 332/364 (91%), Gaps = 1/364 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST+ ETQ++P Q SDEEANL AMQL SASVLPM+LKSAIELDLLEI+AKAGP A++SP
Sbjct: 1 MGSTA-ETQMTPTQVSDEEANLFAMQLASASVLPMILKSAIELDLLEIMAKAGPGAYLSP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+IASQLPT NPDA +LDRILRLLASYSVL SLR LPDG+VERLYGL PVCKFLTKNE
Sbjct: 60 SEIASQLPTTNPDAPVMLDRILRLLASYSVLTYSLRTLPDGRVERLYGLGPVCKFLTKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ L LMNQDKVLMESWYYLKDAVLEGGIPFNKA+GM +F+YHGKDLRFNK+FN G
Sbjct: 120 DGVSIAALNLMNQDKVLMESWYYLKDAVLEGGIPFNKAHGMTSFEYHGKDLRFNKVFNKG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL SVVDVGGG GA L+MI+SKYPSI+GINFDLPHVI+DA
Sbjct: 180 MSDHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLSMIVSKYPSIRGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P++PGV+HVGGDMFVSVPKGDAIF+KWICHDWSDEHC+KFLKNCY+ALP NGKVIVAE I
Sbjct: 240 PSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYDALPNNGKVIVAECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K VIH+D IMLAHNPGGKERTE+EF ALAK AGFQGFQV+ AFNTYIM
Sbjct: 300 LPVAPDTSLATKGVIHIDVIMLAHNPGGKERTEKEFEALAKGAGFQGFQVLGCAFNTYIM 359
Query: 361 EFLK 364
EF+K
Sbjct: 360 EFIK 363
|
Source: Betula pendula Species: Betula pendula Genus: Betula Family: Betulaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284192456|gb|ADB82906.1| caffeic O-methyltransferase1 [Eucalyptus camaldulensis] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 294/366 (80%), Positives = 331/366 (90%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST SETQ++P Q SDEEANL AMQL SASVLPMVLK+AIELDLLEI+AKAGP AF+SP
Sbjct: 1 MGSTGSETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSP 60
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
++A+QLPT+NP+A +LDRI RLLASYSVL C+LR+LPDGKVERLYGLAPVCKFL KNE
Sbjct: 61 GEVAAQLPTQNPEAPAMLDRIFRLLASYSVLTCTLRDLPDGKVERLYGLAPVCKFLVKNE 120
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ L LMNQDK+LMESWYYLKDAVLEGGIPFNKAYGM AF+YHG D RFNKIFN G
Sbjct: 121 DGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKIFNRG 180
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL +VVDVGGG GA L+MI++KYPS+KGINFDLPHVI+DA
Sbjct: 181 MSDHSTITMKKILETYKGFEGLETVVDVGGGTGAVLSMIVAKYPSMKGINFDLPHVIEDA 240
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P PGV+HVGGDMFVSVPKGDAIF+KWICHDWSD+HC KFLKNCY+ALP NGKVIVAE +
Sbjct: 241 PPLPGVKHVGGDMFVSVPKGDAIFMKWICHDWSDDHCAKFLKNCYDALPNNGKVIVAECV 300
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K VIH+DCIMLAHNPGGKERT++EF ALAK AGFQGFQV+ AF T++M
Sbjct: 301 LPVYPDTSLATKNVIHIDCIMLAHNPGGKERTQKEFEALAKGAGFQGFQVMCCAFGTHVM 360
Query: 361 EFLKSA 366
EFLK+A
Sbjct: 361 EFLKAA 366
|
Source: Eucalyptus camaldulensis Species: Eucalyptus camaldulensis Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|253509569|gb|ACT32029.1| caffeic acid O-methyltransferase 2 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/364 (82%), Positives = 327/364 (89%), Gaps = 1/364 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ++P Q SDEEANL AMQLTSASVLPMVLKSAIELDLLEI+AKAGP AF+SP
Sbjct: 1 MGSTG-ETQMTPTQVSDEEANLFAMQLTSASVLPMVLKSAIELDLLEIMAKAGPGAFLSP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
K++ASQLPT NPDA +LDRILRLLA+YS+L CSLR LPDGKVERLYGL PVCKFLTKNE
Sbjct: 60 KELASQLPTSNPDAPVMLDRILRLLATYSILTCSLRTLPDGKVERLYGLGPVCKFLTKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGVTLS L LMNQDKVLMESWYYLKDAVLEGGIPFNK YGM AF+YHG D RFNK+FN G
Sbjct: 120 DGVTLSALSLMNQDKVLMESWYYLKDAVLEGGIPFNKVYGMTAFEYHGTDPRFNKVFNRG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE Y GFEGL ++VDVGGG GATLNMI++K+PSIKGINFDLPHVI+DA
Sbjct: 180 MSDHSTITMKKILETYDGFEGLKTLVDVGGGTGATLNMIVTKHPSIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
PA+PGVEHVGGDMF SVPKGDAIF+KWICHDWSDEHC KFLK CYEALP +GKVIVAE I
Sbjct: 240 PAYPGVEHVGGDMFESVPKGDAIFMKWICHDWSDEHCSKFLKKCYEALPDSGKVIVAECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LP PD SLA+K+V+H+DCIMLAHNPGGKERTE+EF ALA++AGFQGFQV AF TYIM
Sbjct: 300 LPDYPDPSLATKLVVHIDCIMLAHNPGGKERTEKEFEALARSAGFQGFQVKCCAFGTYIM 359
Query: 361 EFLK 364
EF+K
Sbjct: 360 EFVK 363
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|262474806|gb|ACY66932.1| caffeic O-methyltransferase 1 [Eucalyptus camaldulensis] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 293/366 (80%), Positives = 330/366 (90%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST SETQ++P Q SDEEANL AMQL SASVLPMVLK+AIELDLLEI+AKAGP AF+SP
Sbjct: 1 MGSTGSETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSP 60
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
++A+QLPT+NP+A +LDRI RLLASYSVL C+LR+LPDGKVERLYGLAPVCKFL KNE
Sbjct: 61 GEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRDLPDGKVERLYGLAPVCKFLVKNE 120
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ L LMNQDK+LMESWYYLKDAVLEGGIPFNKAYGM AF+YHG D RFNKIFN G
Sbjct: 121 DGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKIFNRG 180
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL +VVDVGGG GA L+MI++KYPS+KGINFDLPHVI+DA
Sbjct: 181 MSDHSTITMKKILETYKGFEGLETVVDVGGGTGAVLSMIVAKYPSMKGINFDLPHVIEDA 240
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P PGV+HVGGDMFVSVPKGDAIF+KWICHDWSD+HC KFLKNCY+ALP NGKVIVAE +
Sbjct: 241 PPLPGVKHVGGDMFVSVPKGDAIFMKWICHDWSDDHCAKFLKNCYDALPNNGKVIVAECV 300
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K VIH+DCIMLAHNPGGKERT++EF LAK AGFQGFQV+ AF T++M
Sbjct: 301 LPVYPDTSLATKNVIHIDCIMLAHNPGGKERTQKEFETLAKGAGFQGFQVMCCAFGTHVM 360
Query: 361 EFLKSA 366
EFLK+A
Sbjct: 361 EFLKTA 366
|
Source: Eucalyptus camaldulensis Species: Eucalyptus camaldulensis Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1169009|sp|P46484.1|COMT1_EUCGU RecName: Full=Caffeic acid 3-O-methyltransferase; Short=CAOMT; Short=COMT; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase gi|437777|emb|CAA52814.1| 0-Methyltransferase [Eucalyptus gunnii] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/366 (80%), Positives = 329/366 (89%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST SETQ++P Q SDEEANL AMQL SASVLPMVLK+AIELDLLEI+AKAGP AF+SP
Sbjct: 1 MGSTGSETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSP 60
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
++A+QLPT+NP+A +LDRI RLLASYSVL C+LRNLPDGKVERLYGLAPVCKFL KNE
Sbjct: 61 GEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGKVERLYGLAPVCKFLVKNE 120
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ L LMNQDK+LMESWYYLKDAVLEGGIPFNKAYGM AF+YHG D RFNKIFN G
Sbjct: 121 DGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKIFNRG 180
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE YKGFEGL +VVDVGGG GA L+MI++KYPS+KGINFDLPHVI+DA
Sbjct: 181 MSDHSTITMKKILETYKGFEGLETVVDVGGGTGAVLSMIVAKYPSMKGINFDLPHVIEDA 240
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P PGV+HVGGDMFVSVPKGDAIF+KWICHDWSD+HC KFLKNCY+ALP GKVIVAE +
Sbjct: 241 PPLPGVKHVGGDMFVSVPKGDAIFMKWICHDWSDDHCAKFLKNCYDALPNIGKVIVAECV 300
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K VIH+DCIMLAHNPGGKERT++EF LAK AGFQGFQV+ AF T++M
Sbjct: 301 LPVYPDTSLATKNVIHIDCIMLAHNPGGKERTQKEFETLAKGAGFQGFQVMCCAFGTHVM 360
Query: 361 EFLKSA 366
EFLK+A
Sbjct: 361 EFLKTA 366
|
Source: Eucalyptus gunnii Species: Eucalyptus gunnii Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3913295|sp|Q43609.1|COMT1_PRUDU RecName: Full=Caffeic acid 3-O-methyltransferase; Short=CAOMT; Short=COMT; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase gi|602588|emb|CAA58218.1| caffeic O-methyltransferase [Prunus dulcis] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 296/364 (81%), Positives = 326/364 (89%), Gaps = 1/364 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ++P Q SDEEANL AMQL SASVLPMVLK+AIELDLLEI+AKAGP F+SP
Sbjct: 1 MGSTG-ETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
DIASQLPTKNPDA +LDR+LRLLASYS+L SLR L DGKVERLYGL PVCKFLTKNE
Sbjct: 60 TDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNE 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
+GV+++ LCLMNQDKVL+ESWY+LKDAVLEGGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 120 EGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
M+ HSTITMKKILE YKGFEGL SVVDVGGG GA LNMI+SKYPSIKGINFDLPHVI+DA
Sbjct: 180 MADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P +PGVEHVGGDMFVSVPKGDAIF+KWICHDWSDEHC+KFLKNCY ALP NGKVI+ E I
Sbjct: 240 PQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PD+SLA+K V+H+D IMLAHNPGGKERTEQEF+ALAK AGFQGF V SAFNTY++
Sbjct: 300 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVI 359
Query: 361 EFLK 364
EFLK
Sbjct: 360 EFLK 363
|
Source: Prunus dulcis Species: Prunus dulcis Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|109255537|gb|ABG27066.1| caffeic acid O-methyltransferase [Boehmeria nivea] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 297/364 (81%), Positives = 325/364 (89%), Gaps = 1/364 (0%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST ETQ++P Q SDEEANL AMQL SASVLPMVLK+AIELDLLEIIAKAGP A++SP
Sbjct: 1 MGSTG-ETQMTPTQVSDEEANLFAMQLASASVLPMVLKTAIELDLLEIIAKAGPGAWLSP 59
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+IA+QLPT NP A +LDRILRLLA YSV+ C LR LP G ERLYGLAPVCKFLTKN
Sbjct: 60 AEIAAQLPTTNPAAPVMLDRILRLLACYSVVACQLRTLPGGAAERLYGLAPVCKFLTKNN 119
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV++S LCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 120 DGVSISPLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRG 179
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKK+LE YKGFEGLNSVVDVGGG GA L+MI+S YPSIKGINFDLPHVI+DA
Sbjct: 180 MSDHSTITMKKLLETYKGFEGLNSVVDVGGGTGAVLSMIVSNYPSIKGINFDLPHVIEDA 239
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
PA+PGVEHVGGDMFVSVPKGDAIF+KWICHDWSDEHC+KFLK+CY+ALP NGKVIVAE I
Sbjct: 240 PAYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKSCYDALPNNGKVIVAECI 299
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PDTSLA+K V H+D IMLAHNPGGKER E+EF+ALAK AGFQGF+VV SAFNTY+M
Sbjct: 300 LPVAPDTSLATKGVAHIDVIMLAHNPGGKERAEKEFQALAKGAGFQGFRVVCSAFNTYVM 359
Query: 361 EFLK 364
EFLK
Sbjct: 360 EFLK 363
|
Source: Boehmeria nivea Species: Boehmeria nivea Genus: Boehmeria Family: Urticaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.986 | 0.994 | 0.760 | 2.3e-151 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.980 | 0.997 | 0.608 | 5.2e-120 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.983 | 0.978 | 0.594 | 9.8e-119 | |
| UNIPROTKB|P93324 | 372 | P93324 "Isoliquiritigenin 2'-O | 0.983 | 0.967 | 0.493 | 1.6e-86 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.959 | 0.921 | 0.469 | 2e-86 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.959 | 0.921 | 0.466 | 3e-85 | |
| TAIR|locus:2199582 | 373 | IGMT4 "indole glucosinolate O- | 0.972 | 0.954 | 0.470 | 3.8e-85 | |
| TAIR|locus:2199597 | 373 | IGMT3 "indole glucosinolate O- | 0.939 | 0.922 | 0.474 | 5.6e-84 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.939 | 0.922 | 0.474 | 1.5e-83 | |
| TAIR|locus:2038026 | 352 | AT1G33030 [Arabidopsis thalian | 0.945 | 0.982 | 0.468 | 1.5e-83 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
Identities = 277/364 (76%), Positives = 321/364 (88%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST+ ETQ++P Q +D+EA L AMQL SASVLPM LKSA+ELDLLEI+AK G MSP
Sbjct: 1 MGSTA-ETQLTPVQVTDDEAALFAMQLASASVLPMALKSALELDLLEIMAKNGSP--MSP 57
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+IAS+LPTKNP+A +LDRILRLL SYSVL CS R L VER+YGL PVCK+LTKNE
Sbjct: 58 TEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNE 117
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV+++ LCLMNQDKVLMESWY+LKDA+L+GGIPFNKAYGM+AF+YHG D RFNK+FNNG
Sbjct: 118 DGVSIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNG 177
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS+HSTITMKKILE YKGFEGL S+VDVGGGIGATL MI+SKYP++KGINFDLPHVI+DA
Sbjct: 178 MSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDA 237
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P+ PG+EHVGGDMFVSVPKGDAIF+KWICHDWSDEHCVKFLKNCYE+LP +GKVI+AE I
Sbjct: 238 PSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECI 297
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LP TPD+SL++K V+HVDCIMLAHNPGGKERTE+EF ALAKA+GF+G +VV AF ++
Sbjct: 298 LPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLI 357
Query: 361 EFLK 364
E LK
Sbjct: 358 ELLK 361
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
Identities = 222/365 (60%), Positives = 280/365 (76%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST+++ A +DEEA + A+QL S+S+LPM LK+AIEL LLE + AG ++P
Sbjct: 1 MGSTAADM----AASADEEACMYALQLVSSSILPMTLKNAIELGLLETLVAAG-GKLLTP 55
Query: 61 KDIASQLP-TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119
++A++LP T NP A ++DR+LRLLASY+V++C++ DG++ R Y APVCKFLT N
Sbjct: 56 AEVAAKLPSTANPAAADMVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPN 115
Query: 120 EDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNN 179
EDGV+++ L LMNQDKVLMESWYYLKDAVL+GGIPFNKAYGM+AF+YHG D RFN++FN
Sbjct: 116 EDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNE 175
Query: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239
GM +HS I KK+LE YKGFEGL ++VDVGGG+GAT+ I + YP+IKGINFDLPHVI +
Sbjct: 176 GMKNHSIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISE 235
Query: 240 APAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299
A FPGV HVGGDMF VP GDAI +KWI HDWSDEHC LKNCY+ALP +GKV++ E
Sbjct: 236 AQPFPGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVEC 295
Query: 300 ILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYI 359
ILPV P+ + ++ V HVD IMLAHNPGG+ER E+EF ALAK AGF+ + N +
Sbjct: 296 ILPVNPEATPKAQGVFHVDMIMLAHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFA 355
Query: 360 MEFLK 364
+EF K
Sbjct: 356 IEFTK 360
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 221/372 (59%), Positives = 282/372 (75%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKA------GP 54
MGST+++ A +DEEA + A+QL S+S+LPM LK+AIEL LLE + A G
Sbjct: 1 MGSTAADM----AAAADEEACMYALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGK 56
Query: 55 DAFMSPKDIASQLPTK-NPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113
A ++P ++A +LP+K NP A ++DR+LRLLASY+V+ C + DGK+ R Y APVC
Sbjct: 57 AALLTPAEVADKLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVC 116
Query: 114 KFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRF 173
K+LT NEDGV+++ L LMNQDKVLMESWYYLKDAVL+GGIPFNKAYGM AF+YHG D RF
Sbjct: 117 KWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARF 176
Query: 174 NKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL 233
N++FN GM +HS I KK+L+ Y GF+ ++VVDVGGG+GAT+ ++S++P I+GIN+DL
Sbjct: 177 NRVFNEGMKNHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDL 236
Query: 234 PHVIQDAPAFPGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNG 292
PHVI +AP FPGVEHVGGDMF SVP+G DAI +KWI HDWSDEHC + LKNCY+ALP +G
Sbjct: 237 PHVISEAPPFPGVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHG 296
Query: 293 KVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352
KV+V E +LP + D + + V HVD IMLAHNPGGKER E+EFR LA+AAGF GF+
Sbjct: 297 KVVVVECVLPESSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATY 356
Query: 353 SAFNTYIMEFLK 364
N + +EF K
Sbjct: 357 IYANAWAIEFTK 368
|
|
| UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)] | Back alignment and assigned GO terms |
|---|
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 181/367 (49%), Positives = 247/367 (67%)
Query: 4 TSSETQISP-AQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPD-AFMSPK 61
T + QIS ++ +++ A L AM LT+ V P VL +AI+L+L EIIAKA P AFMSP
Sbjct: 7 TKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPS 66
Query: 62 DIASQLP--TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119
+IAS+LP T++ D LDR+LRLLASYSVL + R + DG ER+YGL+ V K+L +
Sbjct: 67 EIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPD 126
Query: 120 EDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIP-FNKAYGMNAFDYHGKDLRFNKIFN 178
E L+ L++ W K+AV++ I F +G+ +++ GKD + N+IFN
Sbjct: 127 ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFN 186
Query: 179 NGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ 238
M MK++LE Y GFEG++++VDVGGG G L +IISKYP IKGINFDLP VI+
Sbjct: 187 KSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE 246
Query: 239 DAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298
+AP G+EHVGGDMF SVP+GDA+ +K +CH+WSDE C++FL NC++AL NGKVI+ E
Sbjct: 247 NAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306
Query: 299 SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTY 358
ILP P+TS SK+V +D +M GG+ERTE+++ L+K +GF FQV AFN+
Sbjct: 307 FILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 365
Query: 359 -IMEFLK 364
+MEF K
Sbjct: 366 GVMEFYK 372
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 169/360 (46%), Positives = 241/360 (66%)
Query: 14 QGSDEE-ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTK-- 70
Q DE+ +L A + +A PMVLK+A+EL +++ IA A ++SP +IA LP K
Sbjct: 22 QEIDEKMVSLQAESIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSLPNKPT 81
Query: 71 NPDAHTVLDRILRLLASYSVLNC----SLRNLPDGKVERLYGLAPVCKFLTKNEDGV-TL 125
NP+A +LDR+LRLL S+S+L C S N GK+ER+Y P+CK+ K+ DG +L
Sbjct: 82 NPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGSL 141
Query: 126 SDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHS 185
S L L+ +V++++W LKD +LEG F+ A+ M F+Y D +F+K+F+ MS S
Sbjct: 142 SSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESS 201
Query: 186 TITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPG 245
T+ MKK+LE Y+GFE +N++VDVGGGIG L +I SKYP IKG+NFDL V+ AP +PG
Sbjct: 202 TMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPG 261
Query: 246 VEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTP 305
V+HV GDMF+ VPKGDAIF+KWI HDW DE C+K LKNC+++LP GKVI+ E I P+ P
Sbjct: 262 VKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEP 321
Query: 306 DTS-LASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364
+ + V+ +D +ML GGKER+ +F LA A+GF +++ +++ ++EF K
Sbjct: 322 KPNDFSCNTVLGMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEIICLSYSYSVIEFHK 381
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 168/360 (46%), Positives = 235/360 (65%)
Query: 14 QGSDEE-ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTK-- 70
Q DE+ +L A + + PMVLK+A EL +++ IA AG D ++SP +IA LPTK
Sbjct: 22 QEVDEKMVSLQAESIVNTVAFPMVLKAAFELGVIDTIAAAGNDTWLSPCEIACSLPTKPT 81
Query: 71 NPDAHTVLDRILRLLASYSVLNCSL----RNLPDGKVERLYGLAPVCKFLTKNEDGV-TL 125
NP+A +LDR+L LL S+S+L C + N GK+ER+Y PVCK+ ++ DG +L
Sbjct: 82 NPEAPVLLDRMLSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTGSL 141
Query: 126 SDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHS 185
L ++ +V ++W LKD +LEG FN A+GM F+Y D F ++FN MS S
Sbjct: 142 VPLFMLLHTQVFFKTWTNLKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSEPS 201
Query: 186 TITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPG 245
T+ MKK+L+ Y+GFE +N++VDVGGG G L ++ SKYP IKG+NFDL V+ AP +PG
Sbjct: 202 TMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFYPG 261
Query: 246 VEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTP 305
VEHV GDMFV VPKGDA+F+KWI HDW DE C+K LKNC+++LP GK+I+ E + P P
Sbjct: 262 VEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVTPKEP 321
Query: 306 DTS-LASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364
L+S V +D +ML GGKER+ +F LA A+GF +++ A++ ++EF K
Sbjct: 322 KGGDLSSNTVFAMDLLMLTQCSGGKERSLSQFENLAFASGFLRCEIICLAYSYSVIEFHK 381
|
|
| TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 174/370 (47%), Positives = 250/370 (67%)
Query: 3 STSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEII-AKAG-PDAFMSP 60
S++S+T I D E L+A++L +A+ PMVLK+A+EL + + + A+A D+F+SP
Sbjct: 10 SSNSKTPI--VIDDDNELGLMAVRLANAAAFPMVLKAALELGVFDTLYAEASRSDSFLSP 67
Query: 61 KDIASQLPT--KNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118
+IAS+LPT +NP+A +LDR+LRLLASYSV+ C + +GK ER+Y P+C+F K
Sbjct: 68 SEIASKLPTTPRNPEAPVLLDRMLRLLASYSVVKCG--KVSEGKGERVYRAEPICRFFLK 125
Query: 119 N--EDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYG-MNAFDYHGKDLRFNK 175
+ +D +L+ ++N D V + +W LKD VLEGG F +A+G M FDY G D RF+K
Sbjct: 126 DNIQDIGSLASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSK 185
Query: 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPH 235
+FN + + +KK LE Y+GF+G+N +VDVGGG+G TL ++ SKYP+IKGINFDL
Sbjct: 186 LFNQ--TGFTIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTC 243
Query: 236 VIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295
+ AP++PGVEHV GDMFV VP GDA+ +K I HDW+DE CVK LKNC+++LP +GKV+
Sbjct: 244 ALAQAPSYPGVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPESGKVV 303
Query: 296 VAESILPVTPDTS-LASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA 354
V E + P + + + + +D +M GGKER+ EF ALA A+GF + V A
Sbjct: 304 VIELVTPDEAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQA 363
Query: 355 FNTYIMEFLK 364
++ +I+EF K
Sbjct: 364 YHCWIIEFCK 373
|
|
| TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 169/356 (47%), Positives = 241/356 (67%)
Query: 17 DEEANLLAMQLTSASVLPMVLKSAIELDLLEII-AKAG-PDAFMSPKDIASQLPT--KNP 72
D E L+A++L +A+ PMVLK+++EL + + + A+A D+F+SP +IAS+LPT +NP
Sbjct: 22 DNELGLMAVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNP 81
Query: 73 DAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN--EDGVTLSDLCL 130
A +LDR+LRLLASYS++ C ++ GK +R+Y P+C+F KN +D +L+ +
Sbjct: 82 GAPVLLDRMLRLLASYSMVKCEKVSV--GKEQRVYRAEPICRFFLKNNIQDIGSLASQVI 139
Query: 131 MNQDKVLMESWYYLKDAVLEGGIPFNKAYG-MNAFDYHGKDLRFNKIFNNGMSSHSTITM 189
+N D V + +W LKD VLEGG F +A+G M FDY G D RF+K+FN + + +
Sbjct: 140 VNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQ--TGFTIAVV 197
Query: 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHV 249
KK LE Y+GF+G+N +VDVGGG+G TL ++ SKYP+IKGINFDL + AP +PGVEHV
Sbjct: 198 KKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPTYPGVEHV 257
Query: 250 GGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTS- 308
GDMFV VP G+A+ +K I HDW+DE CVK LKNC+++LP NGKV+V E + P +
Sbjct: 258 AGDMFVDVPTGNAMILKRILHDWTDEDCVKILKNCWKSLPQNGKVVVIELVTPDEAENGD 317
Query: 309 LASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364
+ + + +D +M GGKER+ EF ALA A+GF Q V A++ +I+EF K
Sbjct: 318 INANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFSHCQFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 169/356 (47%), Positives = 241/356 (67%)
Query: 17 DEEANLLAMQLTSASVLPMVLKSAIELDLLEII--AKAGPDAFMSPKDIASQLPT--KNP 72
D E L+A++L +A+ PMVLK+A+EL + + + A + D+F+SP +IAS+LPT +NP
Sbjct: 22 DNELGLMAVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPTTPRNP 81
Query: 73 DAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN--EDGVTLSDLCL 130
+A +LDR+LRLLASYS++ C + L GK ER+Y P+C+F K+ +D +L+ +
Sbjct: 82 EAPVLLDRMLRLLASYSMVKCG-KAL-SGKGERVYRAEPICRFFLKDNIQDIGSLASQVI 139
Query: 131 MNQDKVLMESWYYLKDAVLEGGIPFNKAYG-MNAFDYHGKDLRFNKIFNNGMSSHSTITM 189
+N D V + +W LKD VLEGG F +A+G M FDY G D RF+K+FN + + +
Sbjct: 140 VNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQ--TGFTIAVV 197
Query: 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHV 249
KK LE Y+GF+G+ +VDVGGG+G TL ++ SKYP+IKGINFDL + AP++PGVEHV
Sbjct: 198 KKALEVYEGFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHV 257
Query: 250 GGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTS- 308
GDMFV VP GDA+ +K I HDW+DE CVK LKNC+++LP NGKV+V E + P +
Sbjct: 258 AGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGD 317
Query: 309 LASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364
+ + + +D +M GGKER+ EF ALA A+GF + V A++ +I+EF K
Sbjct: 318 INANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 165/352 (46%), Positives = 240/352 (68%)
Query: 18 EEANL--LAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAH 75
EE NL AM L+S+SVLPMVLK+AI+L L +I+A++GP + + S K+ D+
Sbjct: 2 EEQNLSSYAMILSSSSVLPMVLKTAIDLGLFDILAESGPSSASQIFSLLSNETKKHHDS- 60
Query: 76 TVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGV-TLSDLCLMNQD 134
++++RILR LASYS+L CS+ + G+ +YGLAPV K+ TKN++G +L+ + + QD
Sbjct: 61 SLVNRILRFLASYSILTCSV-STEHGEPFAIYGLAPVAKYFTKNQNGGGSLAPMVNLFQD 119
Query: 135 KVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILE 194
KV+ + WY LKD+VLEGG+PFN +G +A + G D RF ++F + M + + +++ L+
Sbjct: 120 KVVTDMWYNLKDSVLEGGLPFNNTHGSSAVELVGSDSRFREVFQSSMKGFNEVFIEEFLK 179
Query: 195 NYKGFEGLNSVVDVGGGIGATLNMIISKYPSI-KGINFDLPHVIQDAPAFPGVEHVGGDM 253
NY GF+G+ S+VDVGGG G+ L+ IISK+ I K INFDLP VI + PG+EHV GDM
Sbjct: 180 NYNGFDGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSLPSPGIEHVAGDM 239
Query: 254 FVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKV 313
F + PKG+AIF+KW+ H W D+HCVK L NCY++LP NGKVIV + ++P P +L +
Sbjct: 240 FTNTPKGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLDRS 299
Query: 314 VIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365
+ + M+ NP GKERT++EF LA+ AGF QV ++ ++EF K+
Sbjct: 300 LFQFELFMMNMNPSGKERTKKEFEILARLAGFSNVQVPFTSLCFSVLEFHKN 351
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42653 | OMT2_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.7434 | 0.9234 | 0.9854 | N/A | no |
| Q9XGV9 | COMT2_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.7506 | 0.9836 | 0.9972 | N/A | no |
| Q9FQY8 | COMT1_CAPAN | 2, ., 1, ., 1, ., 6, 8 | 0.7679 | 0.9535 | 0.9721 | N/A | no |
| Q43609 | COMT1_PRUDU | 2, ., 1, ., 1, ., 6, 8 | 0.8131 | 0.9918 | 0.9945 | N/A | no |
| Q6T1F6 | BMT_AMMMJ | 2, ., 1, ., 1, ., 6, 9 | 0.6277 | 0.9617 | 0.9943 | N/A | no |
| P46484 | COMT1_EUCGU | 2, ., 1, ., 1, ., 6, 8 | 0.8005 | 1.0 | 1.0 | N/A | no |
| Q00763 | COMT1_POPTM | 2, ., 1, ., 1, ., 6, 8 | 0.7923 | 0.9972 | 1.0 | N/A | no |
| P45986 | IMT1_MESCR | 2, ., 1, ., 1, ., 1, 2, 9 | 0.5258 | 0.9480 | 0.9506 | N/A | no |
| Q84N28 | FOMT1_WHEAT | 2, ., 1, ., 1, ., - | 0.6082 | 0.9808 | 0.9972 | N/A | no |
| O82054 | COMT1_SACOF | 2, ., 1, ., 1, ., 6, 8 | 0.6076 | 0.9808 | 0.9917 | N/A | no |
| Q6ZD89 | OMT1_ORYSJ | 2, ., 1, ., 1, ., 7, 6 | 0.5982 | 0.9371 | 0.9320 | yes | no |
| Q43046 | COMT1_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.7896 | 0.9972 | 1.0 | N/A | no |
| Q43047 | COMT3_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.7786 | 0.9945 | 1.0 | N/A | no |
| A9X7L0 | ANMT_RUTGR | 2, ., 1, ., 1, ., 1, 1, 1 | 0.5219 | 0.9207 | 0.9258 | N/A | no |
| O23760 | COMT1_CLABR | 2, ., 1, ., 1, ., 6, 8 | 0.7783 | 1.0 | 0.9891 | N/A | no |
| P59049 | OMT1_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.7441 | 0.9262 | 0.9883 | N/A | no |
| Q6T1F5 | COMT1_AMMMJ | 2, ., 1, ., 1, ., 6, 8 | 0.7356 | 0.9508 | 0.9534 | N/A | no |
| Q9FK25 | OMT1_ARATH | 2, ., 1, ., 1, ., 7, 6 | 0.7609 | 0.9863 | 0.9944 | yes | no |
| Q06509 | COMT1_MAIZE | 2, ., 1, ., 1, ., 6, 8 | 0.5962 | 0.9808 | 0.9862 | N/A | no |
| Q9SWC2 | COMT1_EUCGL | 2, ., 1, ., 1, ., 6, 8 | 0.7476 | 0.8551 | 1.0 | N/A | no |
| Q9XGW0 | COMT1_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.7616 | 0.9836 | 0.9972 | N/A | no |
| Q38J50 | FOMT2_WHEAT | 2, ., 1, ., 1, ., 1, 6, 9 | 0.6225 | 0.9644 | 0.9915 | N/A | no |
| O81646 | COMT1_CAPCH | 2, ., 1, ., 1, ., 6, 8 | 0.7220 | 0.9535 | 0.9721 | N/A | no |
| O04385 | IEMT_CLABR | 2, ., 1, ., 1, ., 1, 4, 6 | 0.7364 | 1.0 | 0.9945 | N/A | no |
| Q8W013 | COMT1_CATRO | 2, ., 1, ., 1, ., 6, 8 | 0.7472 | 0.9918 | 1.0 | N/A | no |
| A8J6X1 | BMT_GLELI | 2, ., 1, ., 1, ., 6, 9 | 0.6507 | 0.9617 | 0.9805 | N/A | no |
| Q43239 | COMT1_ZINEL | 2, ., 1, ., 1, ., 6, 8 | 0.6991 | 0.9508 | 0.9830 | N/A | no |
| Q8GU25 | COMT1_ROSCH | 2, ., 1, ., 1, ., 6, 8 | 0.7994 | 0.9918 | 0.9945 | N/A | no |
| Q41086 | COMT2_POPTM | 2, ., 1, ., 1, ., 6, 8 | 0.7704 | 0.9945 | 1.0 | N/A | no |
| Q8LL87 | COMT1_COFCA | 2, ., 1, ., 1, ., 6, 8 | 0.7679 | 0.9535 | 0.9971 | N/A | no |
| P28002 | COMT1_MEDSA | 2, ., 1, ., 1, ., 6, 8 | 0.7747 | 0.9918 | 0.9945 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.998 |
| 4th Layer | 2.1.1.68 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 366 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-135 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 6e-20 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 2e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.002 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.002 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 384 bits (988), Expect = e-135
Identities = 134/238 (56%), Positives = 160/238 (67%), Gaps = 2/238 (0%)
Query: 104 ERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNA 163
YGL P K L K ED +L+ L LM D L+ESW +LKDAV EGG PF +A+GM
Sbjct: 4 GEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGMPF 63
Query: 164 FDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY 223
F+Y G D FN++FN M++HS + MKKILE F GL+S+VDVGGG GA I+ Y
Sbjct: 64 FEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAY 123
Query: 224 PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKN 283
P IKGI FDLPHVI DAP+ VE VGGD F SVP+ DAI +KW+ HDWSDE CVK LK
Sbjct: 124 PHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILKR 183
Query: 284 CYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341
CYEALP GKVIV E +LP PD L ++V+ +D ML N GKERTE+E+R L
Sbjct: 184 CYEALPPGGKVIVVEMVLPEDPDDDLETEVL-LLDLNMLVLNG-GKERTEKEWRKLLS 239
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-20
Identities = 31/52 (59%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
Query: 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86
MVLK AIEL + +IIAK G +SP ++AS+LPT NP+A +LDR+LRLLA
Sbjct: 1 MVLKCAIELGIPDIIAKHG--KPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 47/275 (17%), Positives = 102/275 (37%), Gaps = 30/275 (10%)
Query: 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94
+K+AIELDL +A+ PKD+A+ L +V R+ LL + +
Sbjct: 5 SCMKAAIELDLFSHMAEG-------PKDLAT-LAADT---GSVPPRLEMLLETLRQMRVI 53
Query: 95 LRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIP 154
L A + L + L + +Y + G
Sbjct: 54 NLE---DGKWSLTEFAD--YMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKN 108
Query: 155 FNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGA 214
F + R + ++ + + ++L +G+ ++DVGGGIG
Sbjct: 109 FKGQVP------YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGD 162
Query: 215 TLNMIISKYPSIKGINFDLPH---VIQDAPAFPG----VEHVGGDMFVS-VPKGDAIFIK 266
++ +P + +LP ++ + A G + + D++ P+ DA+
Sbjct: 163 ISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 222
Query: 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301
I + +++ K ++A+ G++++ + ++
Sbjct: 223 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 205 VVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDM---- 253
V+D+G G GA + ++ P + D+ P ++ A VE + GD
Sbjct: 2 VLDLGCGTGALA-LALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 254 FVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296
+ D I H E +FL+ L G +++
Sbjct: 61 PEADESFDVIISDPPLH-HLVEDLARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVS 256
V+D+G G G+ + +P + DL P +++ A P + V GD +
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63
Query: 257 VPKG---DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298
+ DA+FI ++ L L G++++
Sbjct: 64 LDLLEGFDAVFIGGGGG-----DLLELLDALASLLKPGGRLVLNA 103
|
Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.77 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.75 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.75 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.74 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.73 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.73 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.71 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.68 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.68 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.64 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.64 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.63 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.63 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.61 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.61 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.61 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.61 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.61 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.61 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.6 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.59 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.57 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.57 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.56 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.56 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.55 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.54 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.54 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.53 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.53 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.5 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.5 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.49 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.49 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.48 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.46 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.46 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.45 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.45 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.45 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.44 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.44 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.44 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.44 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.43 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.43 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.42 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.4 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.4 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.4 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.39 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.38 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.38 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.35 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.35 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.32 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.32 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.3 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.3 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.3 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.3 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.3 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.29 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.25 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.24 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.24 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.21 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.2 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.2 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.2 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.2 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.2 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.19 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.18 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.17 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.16 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.13 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.13 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.13 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.12 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.12 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.12 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.11 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.09 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.09 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.09 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.08 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.06 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.06 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.05 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.05 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.0 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.0 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.99 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.98 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.98 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.97 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.96 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.94 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.94 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.92 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.91 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.91 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.91 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.9 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.9 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.89 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.86 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.86 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.85 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.81 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.8 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.79 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.78 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.78 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.78 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.77 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.77 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.76 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.7 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.67 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.67 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.66 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.65 | |
| PLN02366 | 308 | spermidine synthase | 98.63 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.63 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.61 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.6 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.59 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.58 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.57 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.53 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.52 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.51 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.51 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.48 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.46 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.45 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.45 | |
| PLN02476 | 278 | O-methyltransferase | 98.4 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.39 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.39 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.38 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.29 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.28 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.26 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.26 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.24 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.23 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.2 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.19 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.19 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.18 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.16 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.16 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.16 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.16 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.14 | |
| PLN02823 | 336 | spermine synthase | 98.12 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.12 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.11 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.09 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.06 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.06 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.04 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.04 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.01 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.01 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.99 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.97 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.95 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.93 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.91 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.9 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.9 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.89 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.88 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.86 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.84 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.82 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.81 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.8 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.78 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.77 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.7 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.69 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.68 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.64 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.61 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.56 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.55 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.47 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.46 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.46 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.44 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.41 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.35 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.34 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.33 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.33 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.27 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.18 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.14 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.14 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.09 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.97 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.97 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.94 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.93 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.92 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.92 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.91 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.91 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 96.9 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.88 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.86 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.84 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.83 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.8 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.8 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.79 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.78 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.77 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.71 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 96.62 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.6 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.49 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 96.42 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.4 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.32 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.27 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.27 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.27 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.14 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.09 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.07 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.07 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.07 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.07 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.03 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.98 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 95.93 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.92 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 95.9 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.87 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 95.87 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.78 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 95.77 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.76 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.63 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 95.6 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 95.58 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.56 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 95.33 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 95.31 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 95.3 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.25 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 95.25 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 95.18 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.15 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.15 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.14 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 95.11 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.08 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 95.07 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 95.02 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 94.97 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 94.9 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 94.69 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 94.68 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 94.56 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.52 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.49 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 94.4 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 94.39 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 94.12 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.11 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.08 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 94.0 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 93.97 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 93.92 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 93.88 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 93.84 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 93.71 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 93.69 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 93.67 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.67 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 93.66 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 93.66 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 93.64 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.62 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.48 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 93.36 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 93.32 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.32 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 93.22 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.01 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.01 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 92.77 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 92.75 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.59 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 92.57 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 92.46 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 92.46 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.38 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 92.36 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.9 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 91.85 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 91.84 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 91.66 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 91.6 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 91.33 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 91.31 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 91.13 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 91.07 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 91.07 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 90.9 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 90.67 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 90.63 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 90.6 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 90.55 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.3 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 90.18 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 89.89 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 89.74 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 89.59 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 89.51 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 89.33 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 88.96 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 88.89 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 88.69 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 88.69 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.54 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 88.12 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 87.9 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 87.9 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 87.62 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 87.36 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 87.34 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 86.53 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 85.96 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 85.89 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 85.86 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 85.84 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 85.79 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 85.74 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 85.58 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.18 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 85.13 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 84.85 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 84.83 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 84.58 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 84.11 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 83.43 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 83.05 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 82.97 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 82.9 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 82.8 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 82.73 | |
| PF08784 | 102 | RPA_C: Replication protein A C terminal; InterPro: | 82.57 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 82.3 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 82.09 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 81.82 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 81.58 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 81.38 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 81.31 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 81.28 | |
| PRK05638 | 442 | threonine synthase; Validated | 81.06 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 81.02 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 80.87 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 80.83 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 80.69 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 80.11 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=323.27 Aligned_cols=338 Identities=54% Similarity=0.903 Sum_probs=301.3
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCC-CCCCCcchHHHHHHHHhcccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPT-KNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.++..+++++++++...+++++|+||||||.|.+.+ + ..|||..+.. ++|.++.+++|+||.|++.++++..
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~ 76 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCR 76 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceee
Confidence 34566678999999999999999999999999999953 3 8899999885 5777999999999999999999974
Q ss_pred cccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHH
Q 017777 95 LRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFN 174 (366)
Q Consensus 95 ~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 174 (366)
. ..+ + .|.+++.++.++++.+..++..++...+....++.|.++.++++.+..++..++|..+++|...+....
T Consensus 77 ~---~~~--~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~ 150 (342)
T KOG3178|consen 77 L---VGG--E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFS 150 (342)
T ss_pred e---ecc--e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccH
Confidence 1 111 3 899999999888666666888888888888899999999999999999999999988899999888888
Q ss_pred HHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-CCceEEEccC
Q 017777 175 KIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-PGVEHVGGDM 253 (366)
Q Consensus 175 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~D~ 253 (366)
..++++|........+.+++.+.++++....||||+|.|..+..++..+|+++++.+|+|.+++.+... ++|+.+.+|+
T Consensus 151 ~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm 230 (342)
T KOG3178|consen 151 KDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM 230 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc
Confidence 999999999998888889998887888999999999999999999999999999999999999999887 8999999999
Q ss_pred CCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC-CCCCchhhhhhhhcchhhHhhCCCCccCC
Q 017777 254 FVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV-TPDTSLASKVVIHVDCIMLAHNPGGKERT 332 (366)
Q Consensus 254 ~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 332 (366)
|++.|.+|+|++.++||||+|++++++|++++..|+|||.|++.|.+.++ .............+|+.|+.+..+|++|+
T Consensus 231 fq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert 310 (342)
T KOG3178|consen 231 FQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERT 310 (342)
T ss_pred cccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceecc
Confidence 99999999999999999999999999999999999999999999998775 32222224455678888988877799999
Q ss_pred HHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 333 EQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 333 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.+|+..++.++||.+..+.-.+..+++||++|
T Consensus 311 ~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 311 LKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999999986
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=291.85 Aligned_cols=290 Identities=17% Similarity=0.275 Sum_probs=212.5
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
.+++|++|++|||||.|.+ +|.|++|||+++++ +++.++|||++|+++|+|++. +++|++|+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~---------~~~y~~t~~ 65 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE---------DGKWSLTEF 65 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec---------CCcEecchh
Confidence 4679999999999999988 59999999999999 999999999999999999963 589999999
Q ss_pred chhhhcCCCCC---ChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhh-hcchhh
Q 017777 113 CKFLTKNEDGV---TLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMS-SHSTIT 188 (366)
Q Consensus 113 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~ 188 (366)
+..++.+.++. ++.++..+. .......|.+|.+++|+ .++|...+ .+....++. ..|...|. ......
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~ 137 (306)
T TIGR02716 66 ADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFA 137 (306)
T ss_pred HHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-Cccccccc-----CCCCCCHHH-HHhHHHHHHhcchhH
Confidence 99777655432 122333332 11223578999999984 44443222 221222222 23334443 333334
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~ 260 (366)
.+.+.+.+. +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +|++++++|+++ ++|.+
T Consensus 138 ~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~ 216 (306)
T TIGR02716 138 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA 216 (306)
T ss_pred HHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCC
Confidence 555666666 778899999999999999999999999999999998888776542 579999999987 66667
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhh-hcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVI-HVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++.... ....... .....+... -...++.++|.++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~l 293 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYILGAGMPFS--VLGFKEQARYKEI 293 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHHHcccccc--cccCCCHHHHHHH
Confidence 99999999999999888999999999999999999999877654321 1111110 011111100 1123457999999
Q ss_pred HHHcCCceeEEE
Q 017777 340 AKAAGFQGFQVV 351 (366)
Q Consensus 340 l~~aGf~~~~~~ 351 (366)
|+++||+.++++
T Consensus 294 l~~aGf~~v~~~ 305 (306)
T TIGR02716 294 LESLGYKDVTMV 305 (306)
T ss_pred HHHcCCCeeEec
Confidence 999999988753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=285.43 Aligned_cols=236 Identities=36% Similarity=0.636 Sum_probs=206.7
Q ss_pred ccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhhh
Q 017777 104 ERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSS 183 (366)
Q Consensus 104 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 183 (366)
+++|++|+.++.|+.+.+..++..++.+...+.++.+|.+|.+++++|.++|+..+|.++|+++.++++..+.|+.+|..
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 69999999999999887756788888876788899999999999999999999999988999999999999999999999
Q ss_pred cchhhH-HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCCCCCE
Q 017777 184 HSTITM-KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDA 262 (366)
Q Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~ 262 (366)
.+.... +.+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.+|+
T Consensus 83 ~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~ 161 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADV 161 (241)
T ss_dssp HHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESE
T ss_pred hhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccc
Confidence 887776 77788787 9999999999999999999999999999999999999998888789999999999998888999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCC--cEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVN--GKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pg--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+++++||+|+++++..+|++++++|+|| |+|+|+|.+.++....+........+|+.|+.++ +|++||.+||++||
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll 240 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEALL 240 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHHH
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHHh
Confidence 99999999999999999999999999999 9999999999887666543323357899999886 79999999999998
Q ss_pred H
Q 017777 341 K 341 (366)
Q Consensus 341 ~ 341 (366)
+
T Consensus 241 ~ 241 (241)
T PF00891_consen 241 K 241 (241)
T ss_dssp H
T ss_pred C
Confidence 5
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=145.09 Aligned_cols=163 Identities=21% Similarity=0.265 Sum_probs=122.0
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--D 261 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D 261 (366)
+..... ..++.+|||||||||..+..+++..+..+++++|. +.|++.+++. ..++|+.+|..+ |+|+. |
T Consensus 43 ~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 43 LISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred HHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 344333 44689999999999999999999999999999998 9999988764 238999999998 99975 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc-hhhH-h-hCC------------
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD-CIML-A-HNP------------ 326 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~------------ 326 (366)
+|.+++.|+++++.+ ++|++++|+|||||++++.|...+..+....... ...+. +.-. . ...
T Consensus 122 ~vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~-~~~~~~v~P~~g~~~~~~~~~y~yL~eS 198 (238)
T COG2226 122 AVTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI-LYYFKYVLPLIGKLVAKDAEAYEYLAES 198 (238)
T ss_pred EEEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHH-HHHHHhHhhhhceeeecChHHHHHHHHH
Confidence 999999999998765 7899999999999999999998776533211100 01111 0000 0 000
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEECCCcee
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSSAFNTY 358 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 358 (366)
.....+.+++.++++++||+.+.......+..
T Consensus 199 i~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 199 IRRFPDQEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred HHhCCCHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 11234889999999999999988777655443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-17 Score=145.65 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=114.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCC-CCCCC--CEEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFV-SVPKG--DAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~--D~i~ 264 (366)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.|++.+++. ++++++++|+.+ |++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999888875 5679999998 8888877532 478999999987 77754 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh---hHhhCCC-----------Ccc
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI---MLAHNPG-----------GKE 330 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------~~~ 330 (366)
+.+++|++++. ..+|++++++|||||++++.|...++.+..... ....+... ....... ...
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999865 478999999999999999999876553211100 00000000 0000000 124
Q ss_pred CCHHHHHHHHHHcCCceeEEEECCCcee
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSAFNTY 358 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 358 (366)
++.+++.++++++||+.++.....++..
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 6899999999999999999888765544
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-18 Score=153.84 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=116.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhC--CCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKY--PSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~~ 268 (366)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++. .+++++++|+.+ +.+..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 356799999999999999999874 7899999998 8888877542 468999999987 6666699999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh-----------------hCCCCccC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA-----------------HNPGGKER 331 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 331 (366)
+|++++++...+|++++++|+|||.+++.|.+..++..... . ...+++.. ....-...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH--L---LIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH--H---HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99998888889999999999999999999987655422111 0 11111000 00012356
Q ss_pred CHHHHHHHHHHcCCceeEEEECCCceeEEE
Q 017777 332 TEQEFRALAKAAGFQGFQVVSSAFNTYIME 361 (366)
Q Consensus 332 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie 361 (366)
|.+++.++++++||+.++.......+.++.
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 236 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNFGSLV 236 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhHhHHh
Confidence 999999999999999776544433333333
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-18 Score=152.74 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=112.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHh--CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISK--YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~~ 268 (366)
.+..+|||||||+|..+..+++. .|+.+++++|+ +.+++.+++. .+++++++|+.+ +.+..|+|+++.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45689999999999999988884 58999999998 8998887642 379999999887 6666699999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh-----------h-H-hhCCCCccCCHHH
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI-----------M-L-AHNPGGKERTEQE 335 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~-----------~-~-~~~~~~~~~t~~e 335 (366)
+|++++++...++++++++|+|||.+++.|.+..++...... ......++. . . .....-...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999988777899999999999999999999766544222110 000000000 0 0 0000112348999
Q ss_pred HHHHHHHcCCceeEEEEC
Q 017777 336 FRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~ 353 (366)
..++|++|||+.+..+-.
T Consensus 214 ~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHcCchhHHHHHH
Confidence 999999999997665443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-18 Score=150.58 Aligned_cols=156 Identities=21% Similarity=0.304 Sum_probs=80.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~ 267 (366)
..++.+|||+|||+|..+..+++.. |+.+++++|+ +.|++.+++. .+|+++++|..+ |+++. |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999998875 6789999998 9999888642 589999999988 88865 9999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhH--------hhCCC-----------C
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIML--------AHNPG-----------G 328 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----------~ 328 (366)
.||++++.+ +.|++++|+|||||+++|+|...+..+. .. ..+.+++. ....+ .
T Consensus 125 glrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~---~~---~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~ 196 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPL---LR---ALYKFYFKYILPLIGRLLSGDREAYRYLPESIR 196 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHH---HH---HHHHH----------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCch---hh---ceeeeeecccccccccccccccccccccccccc
Confidence 999998764 6899999999999999999998776411 11 11111110 00000 1
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEECCCce-eEEEE
Q 017777 329 KERTEQEFRALAKAAGFQGFQVVSSAFNT-YIMEF 362 (366)
Q Consensus 329 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-~vie~ 362 (366)
...+.+++.++++++||+.++..+...+. .+..+
T Consensus 197 ~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g 231 (233)
T PF01209_consen 197 RFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVG 231 (233)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 22378999999999999999988875443 34433
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=143.95 Aligned_cols=156 Identities=20% Similarity=0.285 Sum_probs=118.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKG-- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~-- 260 (366)
...++..+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..++.++++|+.+ +++..
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 345676676 7788999999999999999888765 679999998 777776654 2579999999887 67643
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..+++|++.++...+|++++++|||||++++.+......... ... ... ... .......+.+++.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~--~~~---~~~-~~~--~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW--DEE---FKA-YIK--KRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc--HHH---HHH-HHH--hcCCCCCCHHHHHHHH
Confidence 99999999988886677899999999999999999999866442111 010 000 011 0122345889999999
Q ss_pred HHcCCceeEEEECC
Q 017777 341 KAAGFQGFQVVSSA 354 (366)
Q Consensus 341 ~~aGf~~~~~~~~~ 354 (366)
+++||+.+++....
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999987754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-16 Score=139.61 Aligned_cols=168 Identities=18% Similarity=0.220 Sum_probs=120.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~~- 260 (366)
.++..+. .....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|..+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 4455555 5667899999999999999999886 6789999998 777766653 2578999999877 55543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhh-hhcchhhHh---------------
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVV-IHVDCIMLA--------------- 323 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~-~~~~~~~~~--------------- 323 (366)
|+|++.+++|++++. .++|+++.++|+|||++++.+...+... ...... ..+...+-.
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 999999999998765 4789999999999999999887544321 000000 000000000
Q ss_pred hCCCCccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEEe
Q 017777 324 HNPGGKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFLK 364 (366)
Q Consensus 324 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 364 (366)
.......++.+++.++|+++||+++++.... +..+++.++|
T Consensus 190 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 QESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0001123578999999999999999988886 6667777765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-16 Score=138.90 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=109.1
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC--CCCEEEec
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP--KGDAIFIK 266 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~--~~D~i~~~ 266 (366)
..++..++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++++|+.+..+ ..|+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 45666666 66779999999999999999999999999999998 888888865 478999999875323 23999999
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh-----hCCCCccCCHHHHHHHHH
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA-----HNPGGKERTEQEFRALAK 341 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~t~~e~~~ll~ 341 (366)
.++|++++. ..++++++++|||||++++................. .....+... ...+....+.+++.++|+
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRAL-ARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHH-hccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999998865 478999999999999999864321111000000000 000000000 001223468999999999
Q ss_pred HcCCcee
Q 017777 342 AAGFQGF 348 (366)
Q Consensus 342 ~aGf~~~ 348 (366)
++||++.
T Consensus 174 ~aGf~v~ 180 (255)
T PRK14103 174 DAGCKVD 180 (255)
T ss_pred hCCCeEE
Confidence 9999854
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=143.03 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=108.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCC--CEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKG--DAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~--D~i~~~~~ 268 (366)
....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999987 679999998 7777665431 479999999987 66644 99999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCC--chhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDT--SLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+||+++. ..++++++++|||||+++|.+......... .........++-...... .-...+.++|.++++++||.
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 9999875 478999999999999999988654321111 000011111111111100 11234799999999999999
Q ss_pred eeEEEECC
Q 017777 347 GFQVVSSA 354 (366)
Q Consensus 347 ~~~~~~~~ 354 (366)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=140.15 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=108.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CEEEeccccccCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWS 273 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~ 273 (366)
...+|||||||+|.++..+++.++..+++++|. +.+++.+++. .+++++.+|+.+ +++.. |+|++++++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 467999999999999999999888889999998 7888777653 578999999887 66543 9999999999998
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 274 DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
+.+ .+|++++++|+|||++++.+...+... ... ...+.++ ...+.+|+.++|+++||+.+++...
T Consensus 193 d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred CHH--HHHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 775 689999999999999999876543210 000 0111111 1257899999999999999988776
Q ss_pred C
Q 017777 354 A 354 (366)
Q Consensus 354 ~ 354 (366)
.
T Consensus 258 ~ 258 (340)
T PLN02490 258 G 258 (340)
T ss_pred C
Confidence 4
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=129.93 Aligned_cols=168 Identities=19% Similarity=0.183 Sum_probs=120.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK- 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~- 259 (366)
.++..+. ..+..+|||||||+|.++..++..+| +.+++++|+ +.+++.+++. .++.++.+|+.+ +.+.
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4455454 44568999999999999999999987 689999998 6666665442 468899999877 4443
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc--ch---hhHhhCCC------
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV--DC---IMLAHNPG------ 327 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~------ 327 (366)
.|+|++.+++|++++. ..+|+++.++|+|||++++.+...+..... ....... .. ...... +
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 194 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLIS-KNAEAYS 194 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHc-CCcHHHH
Confidence 3999999999998765 478999999999999999998765543110 0000000 00 000000 1
Q ss_pred ------CccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEEec
Q 017777 328 ------GKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFLKS 365 (366)
Q Consensus 328 ------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k~ 365 (366)
...++.++|.++|+++||+.+++.... +...++.++|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 195 YLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 123578999999999999999988864 67788888874
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=126.90 Aligned_cols=151 Identities=22% Similarity=0.237 Sum_probs=113.2
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC------CeEEEecc-hhHHhhCCCC---------CCceEEEccCCC
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS------IKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFV 255 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~ 255 (366)
++..+. .....++|||+||||..+..+++..+. .++++.|+ |++++.+++. .++.++++|..+
T Consensus 92 ~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 92 FVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred hhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 344444 445689999999999999999999877 78999998 9998876542 359999999998
Q ss_pred -CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhh--hhcch-----------
Q 017777 256 -SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVV--IHVDC----------- 319 (366)
Q Consensus 256 -~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~--~~~~~----------- 319 (366)
|+|.+ |.+++.+-+.++++.+ +.|++++|+|||||++.+.|+..-+.+. ..++. .+++.
T Consensus 171 LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd 245 (296)
T KOG1540|consen 171 LPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGD 245 (296)
T ss_pred CCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhh
Confidence 99875 9999999999999876 7799999999999999999986544211 11111 11111
Q ss_pred ----hhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 320 ----IMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 320 ----~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
..+... =.+-.+.+++..+.++|||+.+.
T Consensus 246 ~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 246 RKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 001100 11334889999999999999887
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=145.01 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=114.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-- 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-- 260 (366)
+.+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++. .+++++.+|+.. ++|..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 44666665 6667899999999999999888876 679999998 7777766432 478999999987 66643
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..+++|+++.. .+|++++++|+|||++++.+........... ..... . ..+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------~~~~~-~--~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSPE------FAEYI-K--QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcHH------HHHHH-H--hcCCCCCCHHHHHHHH
Confidence 9999999999988754 7899999999999999999876543221111 11111 1 1234567899999999
Q ss_pred HHcCCceeEEEEC
Q 017777 341 KAAGFQGFQVVSS 353 (366)
Q Consensus 341 ~~aGf~~~~~~~~ 353 (366)
+++||+++.+...
T Consensus 403 ~~aGF~~i~~~d~ 415 (475)
T PLN02336 403 KDAGFDDVIAEDR 415 (475)
T ss_pred HHCCCeeeeeecc
Confidence 9999999877654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-15 Score=131.82 Aligned_cols=157 Identities=22% Similarity=0.199 Sum_probs=126.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~ 260 (366)
.+.+.+.+. +.++.+|||||||.|.++..+++.+ +++++++++ ++..+.+++. .++++...|+.+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 556778887 9999999999999999999999998 889999998 6666655541 47999999987633346
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|-|++..+++|+..+....+++++++.|+|||++++.....+..+.. ...++...-.+|+|..++.+++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999888999999999999999999999877664321 11112222224899999999999999
Q ss_pred HHcCCceeEEEECC
Q 017777 341 KAAGFQGFQVVSSA 354 (366)
Q Consensus 341 ~~aGf~~~~~~~~~ 354 (366)
+++||++......+
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999988766543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=132.38 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=106.4
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC-------CCCCCceEEEccCCC-CCC-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA-------PAFPGVEHVGGDMFV-SVP-K 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~-~~~-~ 259 (366)
..++..+. ...+.+|||||||+|.++..++...+. .++++|. +.++..+ ....++.+...++.+ +.. .
T Consensus 111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 34555554 344689999999999999999887654 7899997 5554332 123578888888765 333 3
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.|+|++..+|||+++. ..+|++++++|+|||.|++.+...+.+......+. .....|. ..-..++..++.++
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~---~ry~k~~---nv~flpS~~~L~~~ 260 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK---DRYAKMK---NVYFIPSVSALKNW 260 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCch---HHHHhcc---ccccCCCHHHHHHH
Confidence 4999999999998766 47899999999999999998766543321110000 0000010 01123589999999
Q ss_pred HHHcCCceeEEEEC
Q 017777 340 AKAAGFQGFQVVSS 353 (366)
Q Consensus 340 l~~aGf~~~~~~~~ 353 (366)
|+++||+.+++...
T Consensus 261 L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 261 LEKVGFENFRILDV 274 (314)
T ss_pred HHHCCCeEEEEEec
Confidence 99999999987764
|
Known examples to date are restricted to the proteobacteria. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-15 Score=123.37 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=96.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCC--CCEEEeccccccCCh
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPK--GDAIFIKWICHDWSD 274 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~--~D~i~~~~~lh~~~~ 274 (366)
.....+|||||||.|.++..+.+... +++++|+ +.+++. ..+.....+... +.+. .|+|+++++|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 35678999999999999999966533 8999998 777766 233333332223 2332 399999999999986
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
...+|+++++.|||||++++.++..... ...... ........ ......++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFL-KWRYDRPY-GGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHH-HCCGTCHH-TTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHH-hcCCcCcc-CceeccCCHHHHHHHHHHCCCEEEE
Confidence 4589999999999999999999865431 000011 11111110 0134567999999999999999875
|
... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=134.25 Aligned_cols=161 Identities=18% Similarity=0.126 Sum_probs=110.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~~ 260 (366)
++.+++.+. +.++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 456777776 8889999999999999999999998 789999987 555544432 257999999987522355
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|.|++..++.|++.+....+++++.++|+|||++++........... .......++...-.+|+|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998888899999999999999999987766543110 000000122222224789999999999999
Q ss_pred HHcCCceeEEEECC
Q 017777 341 KAAGFQGFQVVSSA 354 (366)
Q Consensus 341 ~~aGf~~~~~~~~~ 354 (366)
+++||++..+...+
T Consensus 206 ~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 206 EDAGLEVEDVENLG 219 (273)
T ss_dssp HHTT-EEEEEEE-H
T ss_pred hcCCEEEEEEEEcC
Confidence 99999998887653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=129.97 Aligned_cols=136 Identities=17% Similarity=0.225 Sum_probs=105.5
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCC-CCEEEeccccccC
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPK-GDAIFIKWICHDW 272 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~ 272 (366)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+. .|+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999998 767666553 2578999999866 4544 3999999999998
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
++. ..+|++++++|+|||++++.+...+..... . .. .......+.++|.++++++||++++...
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~-------~~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSAI-E-------HE------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEcccccCccc-c-------cc------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 764 589999999999999999998754321000 0 00 0012245789999999999999998877
Q ss_pred CC
Q 017777 353 SA 354 (366)
Q Consensus 353 ~~ 354 (366)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 64
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=125.41 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK-G 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~-~ 260 (366)
+.+++.++ .....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++. .++++...|+.+ +++. .
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34555555 445689999999999999999985 568999998 7777766532 458888899876 4444 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..++|++++++...++++++++|+|||++++.+....++.... .. -...++.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------VG--------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CC--------CCCccCHHHHHHHh
Confidence 999999999998888888999999999999999877765443321000 00 01225788999999
Q ss_pred HHcCCceeEEE
Q 017777 341 KAAGFQGFQVV 351 (366)
Q Consensus 341 ~~aGf~~~~~~ 351 (366)
+ ||+++...
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 7 89987763
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=134.51 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=106.8
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC-------CCCCCceEEEccCCC-CCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA-------PAFPGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~-~~~~~- 260 (366)
.+...++ .-.+.+|||||||+|.++..++...+. .++++|. +.++..+ ....+++++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3444454 234589999999999999999998765 5999997 4444321 113579999999876 55443
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..++||..+. ..+|+++++.|+|||.+++.+...+.+......+.. . + ..| ...-..+|.+++.++|
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~-~-y-~~~---~~~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGD-R-Y-AKM---RNVYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchh-H-H-hcC---ccceeCCCHHHHHHHH
Confidence 999999999998765 478999999999999999876655443221110000 0 0 000 0011246899999999
Q ss_pred HHcCCceeEEEEC
Q 017777 341 KAAGFQGFQVVSS 353 (366)
Q Consensus 341 ~~aGf~~~~~~~~ 353 (366)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999988765
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-15 Score=137.61 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=103.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC--CCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK--GDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~--~D~i~~~~~l 269 (366)
...+|||||||+|.++..+++ ++.+++++|. +++++.++++ .+++++++|+.+ +.+. .|+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 5678999998 8888877632 378899999766 4443 3999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC----CccCCHHHHHHHHHHcCC
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG----GKERTEQEFRALAKAAGF 345 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~e~~~ll~~aGf 345 (366)
||+++.+ .+|++++++|||||.+++.+...... ....... ...........+ .+.++.+|+.++|+++||
T Consensus 209 eHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~-~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIV-GAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhh-hHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 9998765 78999999999999999987532210 0000000 000001000011 235799999999999999
Q ss_pred ceeEEEE
Q 017777 346 QGFQVVS 352 (366)
Q Consensus 346 ~~~~~~~ 352 (366)
+++++.-
T Consensus 283 ~i~~~~G 289 (322)
T PLN02396 283 DVKEMAG 289 (322)
T ss_pred eEEEEee
Confidence 9988743
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-14 Score=124.00 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=117.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC--CC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--GD 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--~D 261 (366)
.++..+. ..+..+|||+|||+|..+..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. .|
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444444 446789999999999999999999986 78999998 677666543 2578999999887 5543 39
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC----------CC----
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN----------PG---- 327 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---- 327 (366)
+|++++++|++++. ..+|+++++.|+|||++++.+...+..... ....+..+..+. .+
T Consensus 109 ~i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 109 AVTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANALL------KKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCchhh------HHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 99999999987764 578999999999999999988765432110 001111110000 00
Q ss_pred -----CccCCHHHHHHHHHHcCCceeEEEECCCce-eEEEEEe
Q 017777 328 -----GKERTEQEFRALAKAAGFQGFQVVSSAFNT-YIMEFLK 364 (366)
Q Consensus 328 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-~vie~~k 364 (366)
....+.++|.++|+++||+.+.+.+...+. .+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 123478899999999999999988887664 4555543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=124.28 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=107.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCCCCC--CCCEEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFVSVP--KGDAIF 264 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~--~~D~i~ 264 (366)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+..+ ..|+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 445666666 66788999999999999999999999999999998 8888888754 679999999876222 339999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhh--hhhcchhhHhhC-C---CCccCCHHHHHH
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKV--VIHVDCIMLAHN-P---GGKERTEQEFRA 338 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~---~~~~~t~~e~~~ 338 (366)
++.++|++++. ..+|++++++|+|||.+++.-. +....+..... .....-+..... . .....+..++.+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQMP---DNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEECC---CCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 99999998765 4789999999999999988632 11110000000 000000010000 0 123457889999
Q ss_pred HHHHcCCce
Q 017777 339 LAKAAGFQG 347 (366)
Q Consensus 339 ll~~aGf~~ 347 (366)
++.++|+.+
T Consensus 174 ~l~~~g~~v 182 (258)
T PRK01683 174 ALAPAACRV 182 (258)
T ss_pred HHHhCCCce
Confidence 999999874
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-15 Score=116.24 Aligned_cols=97 Identities=19% Similarity=0.284 Sum_probs=81.3
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccC-CC-CCCC-CCEEEecc-cc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDM-FV-SVPK-GDAIFIKW-IC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~-~~-~~~~-~D~i~~~~-~l 269 (366)
+.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .++++++++|+ .. +.++ .|+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999998 888876654 27999999999 33 3333 49999999 66
Q ss_pred ccCCh-HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSD-EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~-~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|++.+ ++...+|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 64443 577899999999999999999865
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-14 Score=127.17 Aligned_cols=145 Identities=21% Similarity=0.327 Sum_probs=108.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~ 267 (366)
+....+|||||||+|..+..+++.. +..+++++|. +.+++.+++. ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5567899999999999888777654 5668999998 8888877642 588999999877 66543 9999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCce
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQG 347 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 347 (366)
++|++++. ..+++++.++|||||++++.+....... . ... ..+..+.. ...+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~---~~~--~~~~~~~~-~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL-P---EEI--RNDAELYA-GCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC-C---HHH--HHhHHHHh-ccccCCCCHHHHHHHHHHCCCCc
Confidence 99988765 4789999999999999999987654321 1 011 11122221 11344568899999999999998
Q ss_pred eEEEE
Q 017777 348 FQVVS 352 (366)
Q Consensus 348 ~~~~~ 352 (366)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87644
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=123.34 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=109.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCC-CCCC--C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFV-SVPK--G 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~~~--~ 260 (366)
.+.+.+. +.+..+|||+|||+|.++..++..+ |..+++++|+ +.+++.+++ ..++++...|+.. +++. .
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3455555 6678899999999999999999988 7889999998 666665543 2578899999876 5543 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCc-hhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTS-LASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++.+++|++++. ..++++++++|+|||++++.+.......... ...........+.. ......+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD---HFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 999999999998875 4789999999999999999885322110000 00011111111111 12233456789999
Q ss_pred HHHcCCceeEEEE
Q 017777 340 AKAAGFQGFQVVS 352 (366)
Q Consensus 340 l~~aGf~~~~~~~ 352 (366)
|+++||+.+++..
T Consensus 164 l~~aGf~~~~~~~ 176 (241)
T PRK08317 164 FREAGLTDIEVEP 176 (241)
T ss_pred HHHcCCCceeEEE
Confidence 9999999876544
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=127.56 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=105.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--CCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--SVPK- 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~- 259 (366)
.++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++++|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555543 45679999999999999999985 568999998 8888877642 468899998865 3332
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-hhhhhhh-cchhh---HhhCCCCccCCH
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-ASKVVIH-VDCIM---LAHNPGGKERTE 333 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~t~ 333 (366)
.|+|++..++|+++++. .+|+++.++|||||++++............. ....... ..+.. .... -....+.
T Consensus 112 ~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 112 PVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCH
Confidence 39999999999987664 7899999999999999987543211000000 0000000 00000 0000 1123578
Q ss_pred HHHHHHHHHcCCceeEEEECC
Q 017777 334 QEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 334 ~e~~~ll~~aGf~~~~~~~~~ 354 (366)
+++.++|+++||+++...-+.
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeEE
Confidence 999999999999988665543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=138.38 Aligned_cols=141 Identities=24% Similarity=0.310 Sum_probs=104.8
Q ss_pred CchhhcccCchHHHHHHHHhhhcchh--hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHh
Q 017777 162 NAFDYHGKDLRFNKIFNNGMSSHSTI--TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQ 238 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 238 (366)
.+|+++..+++....|...|...... ........++ +.++.+|||||||+|..+..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 56777777777777676555432111 1111122233 55678999999999999999999999999999998 77787
Q ss_pred hCCCC-----CCceEEEccCCC-C--CCCC--CEEEeccccccC-----------ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 239 DAPAF-----PGVEHVGGDMFV-S--VPKG--DAIFIKWICHDW-----------SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 239 ~a~~~-----~~v~~~~~D~~~-~--~~~~--D~i~~~~~lh~~-----------~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.+++. .+++++++|..+ + +++. |+|+++.++|+| ++++..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 76542 457888899876 3 4433 999999999976 2456789999999999999999999
Q ss_pred ccccCC
Q 017777 298 ESILPV 303 (366)
Q Consensus 298 e~~~~~ 303 (366)
|...++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 876544
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=116.92 Aligned_cols=184 Identities=15% Similarity=0.166 Sum_probs=127.6
Q ss_pred HHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCC
Q 017777 177 FNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMF 254 (366)
Q Consensus 177 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~ 254 (366)
|.++-...+++.. .++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.|+.. ++++|..+|+.
T Consensus 8 Yl~F~~eRtRPa~-dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~ 85 (257)
T COG4106 8 YLQFEDERTRPAR-DLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLR 85 (257)
T ss_pred HHHHHHhccCcHH-HHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence 4444445555443 5666777 78889999999999999999999999999999997 9999888654 89999999998
Q ss_pred CCCC--CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC---CCCc
Q 017777 255 VSVP--KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN---PGGK 329 (366)
Q Consensus 255 ~~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 329 (366)
+-.| +.|+++.+-+||.++|. ..+|.++-..|.|||.|.+.=+-.-+.+............-+...... ....
T Consensus 86 ~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~ 163 (257)
T COG4106 86 TWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAP 163 (257)
T ss_pred hcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCC
Confidence 7333 45999999999998875 588999999999999999864422222111111100000011111100 0234
Q ss_pred cCCHHHHHHHHHHcCCceeEEEE------CCCceeEEEEEec
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVS------SAFNTYIMEFLKS 365 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~------~~~~~~vie~~k~ 365 (366)
..+...|-++|...+=++ .++. +.+...|+|..|.
T Consensus 164 v~s~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWvkg 204 (257)
T COG4106 164 LPSPAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWVKG 204 (257)
T ss_pred CCCHHHHHHHhCccccee-eeeeeeccccCCCccchhhheec
Confidence 568899999999887543 3332 3466677777764
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=118.36 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=101.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC-CCE
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK-GDA 262 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~D~ 262 (366)
.+.+.+. ...+.+|||+|||+|..+..++++ +.+++++|+ +.+++.+++. -++++...|+.. +.+. .|+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 3444444 445689999999999999999984 568999998 7777765432 236677777754 4443 499
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
|+++.++|+++.++...++++++++|+|||++++++....+.... .. +.....+.+|+.++|+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~--------~~--------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC--------HM--------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC--------CC--------CcCccCCHHHHHHHhC-
Confidence 999999999988788899999999999999988876543322100 00 0122367899999997
Q ss_pred cCCceeEEE
Q 017777 343 AGFQGFQVV 351 (366)
Q Consensus 343 aGf~~~~~~ 351 (366)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58877665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-15 Score=121.28 Aligned_cols=136 Identities=22% Similarity=0.300 Sum_probs=98.8
Q ss_pred CCCeEEEEeCCccHHHHHHH-HhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-C--CC-CCCEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMII-SKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-S--VP-KGDAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~~-~~D~i~~~~~ 268 (366)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ .++++|.++|+.+ + ++ ..|+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56899999999999999999 5578899999998 888888765 2689999999998 5 33 3499999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcch--hhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDC--IMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+|++++.+ .+|+++.++|+|+|.+++.+......-. ........+ ........+. ..++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDELP----EQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHHH----HHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHHH----HHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99988764 7899999999999999998876221100 000111111 1111111111 6789999999998
|
... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-13 Score=120.20 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=82.1
Q ss_pred CCCCCeEEEEeCCccH----HHHHHHHhCC-----CCeEEEecc-hhHHhhCCCC-------------------------
Q 017777 199 FEGLNSVVDVGGGIGA----TLNMIISKYP-----SIKGINFDL-PHVIQDAPAF------------------------- 243 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~------------------------- 243 (366)
..+..+|+|+|||+|. ++..+.+..+ +.++++.|+ +.+++.|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999997 4555555554 578999998 8888877652
Q ss_pred --------CCceEEEccCCC-CCCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 244 --------PGVEHVGGDMFV-SVPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 244 --------~~v~~~~~D~~~-~~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+|+|..+|+.+ +.+. .|+|++.++||+++++...+++++++++|+|||+|++-..
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999988 4433 3999999999999988888999999999999999999553
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-14 Score=107.40 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=74.4
Q ss_pred EEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CEEEeccccccCChHHHH
Q 017777 206 VDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCV 278 (366)
Q Consensus 206 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~ 278 (366)
||+|||+|..+..+.+. +..+++++|. +.+++.+++. .++.+..+|+.+ ++++. |+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999998 8889999998 7777766542 567799999988 77755 999999999998 4456
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 017777 279 KFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 279 ~~L~~~~~~L~pgG~lli 296 (366)
.++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=118.11 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=104.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC--CEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG--DAI 263 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i 263 (366)
...+++.++ .....+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++. ..+.++++|+.. ++++. |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445556555 345689999999999999888763 578999998 8888888754 456788999877 66543 999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHc
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAA 343 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 343 (366)
+++.++|+.++. ..+|+++.++|+|||.+++.......-. .........+. ........+.++|.+++...
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---el~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~ 178 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLP---ELHQAWQAVDE----RPHANRFLPPDAIEQALNGW 178 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchH---HHHHHHHHhcc----CCccccCCCHHHHHHHHHhC
Confidence 999999987665 4789999999999999999876543210 00000000000 00123345889999999988
Q ss_pred CCce
Q 017777 344 GFQG 347 (366)
Q Consensus 344 Gf~~ 347 (366)
|++.
T Consensus 179 ~~~~ 182 (251)
T PRK10258 179 RYQH 182 (251)
T ss_pred Ccee
Confidence 8764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=115.97 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=105.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
...+|||||||+|..+..+++.+ +.+++++|. ++|++.+++. ..++++|+.+ |+++. |+|++.+++|++++.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 36799999999999999999887 568999998 9999988753 3567888877 77654 9999999999988764
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhh-hhcc----hhhHhhCCCC-----------ccCCHHHHHHHH
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVV-IHVD----CIMLAHNPGG-----------KERTEQEFRALA 340 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~-----------~~~t~~e~~~ll 340 (366)
++|++++++|||. +.+++...++... ..... ..+. ......+... ...+.+++.+++
T Consensus 128 --~~l~e~~RvLkp~--~~ile~~~p~~~~---~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 128 --KVIAEFTRVSRKQ--VGFIAMGKPDNVI---KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred --HHHHHHHHHhcCc--eEEEEeCCCCcHH---HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7899999999993 4455554443211 01000 0000 0111111011 124889999999
Q ss_pred HHcCCceeEEEECCCce-eEEEEEe
Q 017777 341 KAAGFQGFQVVSSAFNT-YIMEFLK 364 (366)
Q Consensus 341 ~~aGf~~~~~~~~~~~~-~vie~~k 364 (366)
+++| ..++......+. .+..++|
T Consensus 201 ~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 201 EKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHh-CceEEEEccccEEEEEEEee
Confidence 9984 768888876544 4555555
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=116.12 Aligned_cols=144 Identities=17% Similarity=0.118 Sum_probs=101.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCC--CCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPK--GDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~--~D~i~~~~~ 268 (366)
.+..+|||||||+|.++..|++. .++.+++++|+ +.+++.+++. .++++...+... +.+. .|+|+++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45689999999999998888754 45679999998 8998887654 457776665443 3332 399999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh-----CCC-----CccCCHHHHHH
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH-----NPG-----GKERTEQEFRA 338 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~t~~e~~~ 338 (366)
|||+++++...+|++++++++ |.+++.+...+.. . +........... ..+ .+.++.+|+.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~--~-----~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL--A-----YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH--H-----HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 999998888899999999998 6777766554321 0 000000000000 001 23569999999
Q ss_pred HHHHcCCceeEEEEC
Q 017777 339 LAKAAGFQGFQVVSS 353 (366)
Q Consensus 339 ll~~aGf~~~~~~~~ 353 (366)
++++ ||++...++.
T Consensus 210 ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 210 LAPQ-GWRVERQWPF 223 (232)
T ss_pred HhhC-CCeEEeccce
Confidence 9999 9998777664
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.1e-13 Score=116.49 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=101.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~~lh~ 271 (366)
....+|||||||+|.++..++.. +.+++++|+ +.+++.+++. .++.+..+|+.+..+..|+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45789999999999999999875 458999998 8888777542 3789999998763344599999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh--hCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA--HNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
++.++...+++++.+.+++++.+.+... . .... ....+.-.... ....-..++.+++.++++++||+++.
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~~----~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAPK----T---AWLA-FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCC----c---hHHH-HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 9887778999999999987655554211 1 0000 00010000000 00112345899999999999999988
Q ss_pred EEECCC
Q 017777 350 VVSSAF 355 (366)
Q Consensus 350 ~~~~~~ 355 (366)
......
T Consensus 204 ~~~~~~ 209 (219)
T TIGR02021 204 EGLVST 209 (219)
T ss_pred eecccc
Confidence 776543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=116.78 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=102.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCCC--CEEEeccccccCCh
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSD 274 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~ 274 (366)
.+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++. +++.++.+|+.+ +++.. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357899999999999999999999999999998 7777665543 578999999887 55433 99999999998766
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
. ..+|++++++|+|||.+++.+...... . ........ ......+.++|.++++++ |+.+...
T Consensus 114 ~--~~~l~~~~~~L~~~G~l~~~~~~~~~~------~---~~~~~~~~---~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKPGGLLAFSTFGPGTL------H---ELRQSFGQ---HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCCCcEEEEEeCCccCH------H---HHHHHHHH---hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 478999999999999999986543221 0 00111100 133446789999999998 8765543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-12 Score=111.69 Aligned_cols=145 Identities=16% Similarity=0.116 Sum_probs=99.1
Q ss_pred hccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHh----hCCCCCCceEEEccCCCC-----CCCC-CEE
Q 017777 195 NYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQ----DAPAFPGVEHVGGDMFVS-----VPKG-DAI 263 (366)
Q Consensus 195 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~~~~-D~i 263 (366)
.++ +.+..+|||+|||+|.++..+++..+..+++++|+ +.+++ .+++..++.++.+|...+ .++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 355 66788999999999999999999887668999998 76555 445457899999998653 1233 888
Q ss_pred EeccccccCChH-HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 264 FIKWICHDWSDE-HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 264 ~~~~~lh~~~~~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
++ +++++ ....+|+++++.|||||+++|.=...+-+... ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-------------------~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-------------------DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-------------------CHH-HHHHHHHHHHHH
Confidence 74 33333 33457899999999999999942111111000 000 112344599999
Q ss_pred cCCceeEEEECCCc---eeEEEEEec
Q 017777 343 AGFQGFQVVSSAFN---TYIMEFLKS 365 (366)
Q Consensus 343 aGf~~~~~~~~~~~---~~vie~~k~ 365 (366)
+||+.++....... +..+.++++
T Consensus 201 aGF~~i~~~~l~p~~~~h~~~v~~~~ 226 (226)
T PRK04266 201 GGFEILEVVDLEPYHKDHAAVVARKK 226 (226)
T ss_pred cCCeEEEEEcCCCCcCCeEEEEEEcC
Confidence 99999998887533 566666553
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=124.10 Aligned_cols=155 Identities=12% Similarity=0.050 Sum_probs=113.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCCCCCCCCEEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFVSVPKGDAIF 264 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~~~~D~i~ 264 (366)
...+++.+. +.+..+|||||||+|.++..+++.+ +++++++|+ +++++.+++. ..+++...|+.+.....|+|+
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 334556665 6677899999999999999998765 679999998 8888776643 347777888754322349999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+..++++.++.....++++++++|||||++++.+...+...... . ...+-. . ++++...+.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~--~---~~i~~y--i-fp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV--D---PWINKY--I-FPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC--C---CCceee--e-cCCCcCCCHHHHHHHHH-CC
Confidence 99999998877778999999999999999999876554321110 0 011111 1 25778889999888866 58
Q ss_pred CceeEEEECC
Q 017777 345 FQGFQVVSSA 354 (366)
Q Consensus 345 f~~~~~~~~~ 354 (366)
|.+..+...+
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9988776654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-13 Score=119.02 Aligned_cols=141 Identities=18% Similarity=0.139 Sum_probs=101.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------C----CceEEEccCCCCCCCCCEEEeccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------P----GVEHVGGDMFVSVPKGDAIFIKWI 268 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~D~~~~~~~~D~i~~~~~ 268 (366)
+.+|||||||+|.++..|++.. ..++++|. +.+++.|+++ . ++++.+.|.....+.+|+|+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3779999999999999999954 68999998 8888888764 1 467777777665556799999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC----CccCCHHHHHHHHHHcC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG----GKERTEQEFRALAKAAG 344 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~e~~~ll~~aG 344 (366)
++|..++ ..+++.+.+.|||+|+|+|.+....-..... -....+........| .+-.+++|...++..+|
T Consensus 168 leHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~----~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAG----TIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhc----cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 9998665 4889999999999999999876443211100 000111111111111 23458999999999999
Q ss_pred CceeEE
Q 017777 345 FQGFQV 350 (366)
Q Consensus 345 f~~~~~ 350 (366)
+.+..+
T Consensus 242 ~~v~~v 247 (282)
T KOG1270|consen 242 AQVNDV 247 (282)
T ss_pred cchhhh
Confidence 886554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=129.18 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=108.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC---CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV---SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~---~~~~~ 260 (366)
.+.+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++++|+.+ +++..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 345666665 4456799999999999999999875 37899997 777766542 2578999999864 44533
Q ss_pred --CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 261 --DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
|+|++..++|++++++...+|++++++|+|||++++.|......... .... .....++..+|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------~~~~--------~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------KRKN--------NPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------cccC--------CCCeecChHHHHH
Confidence 99999999999998888899999999999999999998765432100 0000 1122356789999
Q ss_pred HHHHcCCceeE
Q 017777 339 LAKAAGFQGFQ 349 (366)
Q Consensus 339 ll~~aGf~~~~ 349 (366)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998653
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-14 Score=109.22 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=58.6
Q ss_pred EEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CC---ceEEEccCCCCCC--CCCEEEeccccccCC
Q 017777 206 VDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PG---VEHVGGDMFVSVP--KGDAIFIKWICHDWS 273 (366)
Q Consensus 206 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~---v~~~~~D~~~~~~--~~D~i~~~~~lh~~~ 273 (366)
||||||+|.++..+++.+|..+++++|+ +.+++.+++. .. +++...|.....+ ..|+|++.++||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999998 8888777764 12 3333334333222 349999999999994
Q ss_pred hHHHHHHHHHHHHhCCCCcEE
Q 017777 274 DEHCVKFLKNCYEALPVNGKV 294 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~l 294 (366)
+...+|+++++.|+|||+|
T Consensus 81 --~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred --hHHHHHHHHHHHcCCCCCC
Confidence 4458999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=114.03 Aligned_cols=103 Identities=17% Similarity=0.334 Sum_probs=88.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCCCCCCC--CEEEeccccccCCh
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFVSVPKG--DAIFIKWICHDWSD 274 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~~~~--D~i~~~~~lh~~~~ 274 (366)
..+..+|||||||+|..+..+.+..|+.+++++|+ +.+++.+++ .+++.+..+|+.++++.. |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34567899999999999999999888899999998 889998876 477899999988766543 99999999999987
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
++..++++++.+++ +++++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 78889999999997 5788888875544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-13 Score=109.75 Aligned_cols=178 Identities=19% Similarity=0.109 Sum_probs=117.7
Q ss_pred HHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCc
Q 017777 174 NKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGV 246 (366)
Q Consensus 174 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v 246 (366)
...|+..|.++.+.....+..-+. .+....||+||||+|..-.. ..--|..+++.+|. +.|-+.+.+ ..++
T Consensus 50 t~~yne~~~~ykrelFs~i~~~~g-k~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYYFLG-KSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhc-ccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 445666666665544444442222 44567889999999987543 23337889999997 666554432 2566
Q ss_pred e-EEEccCCC-C-CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh
Q 017777 247 E-HVGGDMFV-S-VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM 321 (366)
Q Consensus 247 ~-~~~~D~~~-~-~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 321 (366)
. |+.++..+ + .+++ |+|++..+|+... +.++.|++++++|+|||+++++|....+... .........+-..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~--~n~i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGF--WNRILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchH--HHHHHHHHhchhh
Confidence 6 88888776 4 4544 9999999998654 4578999999999999999999998765421 1111222223211
Q ss_pred HhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeE
Q 017777 322 LAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYI 359 (366)
Q Consensus 322 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 359 (366)
... ..|...|++.| +.|++|-|+..+......+..+
T Consensus 204 ~~~-~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~ttw 239 (252)
T KOG4300|consen 204 HLE-SDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTTW 239 (252)
T ss_pred hee-ccceEEehhHH-HHhhhcccccchhhcccCCceE
Confidence 222 36777788777 5778899999887776544433
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=119.13 Aligned_cols=131 Identities=13% Similarity=0.081 Sum_probs=98.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC-CCEEEeccccccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK-GDAIFIKWICHDW 272 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~ 272 (366)
.+.+|||||||+|..+..+++. +.+++++|. +.+++.+++. .++++...|+.. +.+. .|+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 3569999999999999999884 578999998 7777765432 367888888876 3443 3999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
++++...+++++.++|+|||+++++.....+....+ .+....++.+|+.++++ +|+++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 888888999999999999999888765433321100 01122357899999997 48888764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=110.28 Aligned_cols=125 Identities=18% Similarity=0.301 Sum_probs=95.1
Q ss_pred HHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-CCEEE
Q 017777 193 LENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-GDAIF 264 (366)
Q Consensus 193 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-~D~i~ 264 (366)
+..+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|...+.+. .|+|+
T Consensus 24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~ 102 (187)
T PRK08287 24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF 102 (187)
T ss_pred HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence 34444 56778999999999999999999999999999998 7777766542 4688998887554444 49999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+....++ ...+++.+.+.|+|||++++..... .+.+++.+++++.|
T Consensus 103 ~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g 148 (187)
T PRK08287 103 IGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCG 148 (187)
T ss_pred ECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCC
Confidence 8776543 2467999999999999998853211 12456778999999
Q ss_pred CceeEEEE
Q 017777 345 FQGFQVVS 352 (366)
Q Consensus 345 f~~~~~~~ 352 (366)
|+.++++.
T Consensus 149 ~~~~~~~~ 156 (187)
T PRK08287 149 VSELDCVQ 156 (187)
T ss_pred CCcceEEE
Confidence 98766533
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-12 Score=108.17 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=104.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCC-CCCEEEeccccccCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVP-KGDAIFIKWICHDWS 273 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~-~~D~i~~~~~lh~~~ 273 (366)
+..+|||+|||+|.++..+.+..+ +++++|+ +.+++.++++ .+++++.+|..+..+ ..|+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 357899999999999999998776 8999997 8887766542 357888999876333 349999998887664
Q ss_pred hH-------------------HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHH
Q 017777 274 DE-------------------HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 274 ~~-------------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
+. -...+|+.+.++|+|||++++++.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999764221 146
Q ss_pred HHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 335 EFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
++.+++++.||....+..-+.++--++++|.
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~ 178 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIKA 178 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEEe
Confidence 7788999999999888888778878888873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-13 Score=112.75 Aligned_cols=145 Identities=21% Similarity=0.248 Sum_probs=106.6
Q ss_pred eEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-----CCCCC--CEEEeccc
Q 017777 204 SVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-----SVPKG--DAIFIKWI 268 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-----~~~~~--D~i~~~~~ 268 (366)
+||+||||.|....-+++..|+ +++...|. |.+++..+++ .++...+.|+.. +.+.+ |+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999988 89999997 8888877764 456666667654 22334 99999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCC--ccCCHHHHHHHHHHcCCc
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGG--KERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~e~~~ll~~aGf~ 346 (366)
|.-.+.+....++++++++|||||.|++-|....+-...... ....++........|- --++.+++.+++.+|||.
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~--~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK--KGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc--CCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 999998988999999999999999999998755432111000 0111222222222222 235999999999999998
Q ss_pred eeEE
Q 017777 347 GFQV 350 (366)
Q Consensus 347 ~~~~ 350 (366)
.++.
T Consensus 232 ~~~~ 235 (264)
T KOG2361|consen 232 EVQL 235 (264)
T ss_pred hhcc
Confidence 7653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-13 Score=105.19 Aligned_cols=88 Identities=24% Similarity=0.354 Sum_probs=72.6
Q ss_pred EEEEeCCccHHHHHHHHhC---CCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC--CCEEEec-ccccc
Q 017777 205 VVDVGGGIGATLNMIISKY---PSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK--GDAIFIK-WICHD 271 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~--~D~i~~~-~~lh~ 271 (366)
|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++. .++++++.|+.+ ++.. .|+|+++ .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5679999998 8888877643 489999999987 5443 3999995 55999
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q 017777 272 WSDEHCVKFLKNCYEALPVNG 292 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG 292 (366)
+++++...+|+++.+.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-12 Score=112.22 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=102.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHH------hhCC-CCCCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVI------QDAP-AFPGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~------~~a~-~~~~v~~~~~D~~~-~~~~ 259 (366)
+..+...++.+ .+++|||||||.|.++.+++.+.+. .++++|. +... +..- ....+..+..-+.+ +...
T Consensus 104 W~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 104 WDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34455555323 3689999999999999999998765 6899994 2221 1111 11233333333333 3323
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh--hhhhhcchhhHhhCCCCccCCHHHH
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS--KVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
.|+|++..||||..++ ...|+.+++.|+|||.|++-..+.+.+......+ ++..+-+. -...|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv--------~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV--------WFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce--------EEeCCHHHH
Confidence 3999999999998766 5789999999999999999777766553332111 11111111 234689999
Q ss_pred HHHHHHcCCceeEEEEC
Q 017777 337 RALAKAAGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~~ 353 (366)
..|++++||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.7e-12 Score=106.65 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=115.6
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH----HhhCCC--CCCce-EEEccCCCC---CC-------CC-CEEE
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV----IQDAPA--FPGVE-HVGGDMFVS---VP-------KG-DAIF 264 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~--~~~v~-~~~~D~~~~---~~-------~~-D~i~ 264 (366)
+|||||+|+|..+..+++.+|++...--|. +.. .....+ .+++. -+..|+.++ .+ .. |+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999998865564 222 111111 23322 344565542 11 12 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+.+++|-.+-+....+++.+.++|+|||.|++.-+...+..-.+. ....+|-.....-+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999987766432221 12234433333224567789999999999999
Q ss_pred CceeEEEECCCceeEEEEEe
Q 017777 345 FQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 345 f~~~~~~~~~~~~~vie~~k 364 (366)
|+.++.+..+...-+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998777777776
|
The function of this family is unknown. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-13 Score=115.88 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=101.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CC--ceEEEccCCC-CC--CCCCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PG--VEHVGGDMFV-SV--PKGDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~--v~~~~~D~~~-~~--~~~D~i~~~~~lh~ 271 (366)
...+|||||||.|.++..+++. +.+++++|+ ++.++.|+.+ .. +++.+....+ .. ..+|+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 3589999999999999999995 488999998 8889888854 22 4466666554 22 24499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc--hhhHhhCCCC-----ccCCHHHHHHHHHHcC
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD--CIMLAHNPGG-----KERTEQEFRALAKAAG 344 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~t~~e~~~ll~~aG 344 (366)
.++++ .+++.+.+.+||||.+++........ ........ .... +.+.| +...++|+..++.++|
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99886 58999999999999999987753221 11111111 1111 11232 3457899999999999
Q ss_pred CceeEEEE
Q 017777 345 FQGFQVVS 352 (366)
Q Consensus 345 f~~~~~~~ 352 (366)
+.+.....
T Consensus 208 ~~~~~~~g 215 (243)
T COG2227 208 LKIIDRKG 215 (243)
T ss_pred ceEEeecc
Confidence 98876544
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-12 Score=110.85 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=98.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~~lh~ 271 (366)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++.+..+|+.......|+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999998864 46899997 7777766542 3789999994323233499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh-HhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM-LAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
+++++...+++++.+.+++++. +.... .. ............+. ..........+.++|.++++++||++.+.
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP---YT---PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC---cc---HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 9988888999999998754443 33221 10 00000000000000 00001233458899999999999999988
Q ss_pred EECCC
Q 017777 351 VSSAF 355 (366)
Q Consensus 351 ~~~~~ 355 (366)
.+...
T Consensus 213 ~~~~~ 217 (230)
T PRK07580 213 ERISS 217 (230)
T ss_pred eeccc
Confidence 77653
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-12 Score=116.37 Aligned_cols=96 Identities=17% Similarity=0.336 Sum_probs=77.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-----CC--ceEEEccCCCC--CCC-----C-CEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-----PG--VEHVGGDMFVS--VPK-----G-DAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~--v~~~~~D~~~~--~~~-----~-D~i 263 (366)
...+|||+|||+|..+..|++..+ ..+++++|+ +++++.+++. ++ +.++++|+.+. .+. . .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 457899999999999999999987 578999998 7777666432 33 56689999762 221 2 345
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
++..+++++++++...+|++++++|+|||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 556789999999999999999999999999987
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-11 Score=104.10 Aligned_cols=132 Identities=13% Similarity=0.080 Sum_probs=98.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------------------CCCCceEEEccCCC-CC--
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------------------AFPGVEHVGGDMFV-SV-- 257 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~~v~~~~~D~~~-~~-- 257 (366)
....+|||+|||.|..+..|++ .+.+++++|+ +.+++.+. +..+|++.++|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4567999999999999999998 5778999998 77777531 12468999999987 32
Q ss_pred -CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 258 -PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 258 -~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
+..|+|+-..++|+++.+.....++.+.++|+|||++++.....++.... . --...+.+|+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 22499999999999999888899999999999999988876654321100 0 0123578899
Q ss_pred HHHHHHcCCceeEEEE
Q 017777 337 RALAKAAGFQGFQVVS 352 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~ 352 (366)
.++|.. +|.+.....
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 998874 455544433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=114.80 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=84.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCCCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~~~- 259 (366)
-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++++ .+++++..|.++..+.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 3555555 33346999999999999999999999999999998 6777766542 2678899998875443
Q ss_pred -CCEEEecccccc---CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 260 -GDAIFIKWICHD---WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 260 -~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+|+++-.+|. +++....++++.++++|+|||.++++-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 499999866654 455556789999999999999999973
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-12 Score=108.91 Aligned_cols=138 Identities=25% Similarity=0.333 Sum_probs=94.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCC-ceEEEccCCC--CCC-CCCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPG-VEHVGGDMFV--SVP-KGDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-v~~~~~D~~~--~~~-~~D~i~~~~~lh 270 (366)
+..+.||+|+|.|+.+..++..+-+ ++-.+|. +..++.|++ ..+ .++.+.-+.+ |.+ .+|+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4679999999999999987663311 3444454 666666652 234 3445444433 333 239999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
|++|++.+.+|++++.+|+|+|.|+|-|.+...+. ..+|- ..+...|+.+.|+++|++||++++..
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876531 02221 13566799999999999999999876
Q ss_pred EEC
Q 017777 351 VSS 353 (366)
Q Consensus 351 ~~~ 353 (366)
...
T Consensus 200 ~~Q 202 (218)
T PF05891_consen 200 EKQ 202 (218)
T ss_dssp EE-
T ss_pred ccc
Confidence 554
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-11 Score=101.37 Aligned_cols=129 Identities=21% Similarity=0.171 Sum_probs=95.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC-CCCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP-KGDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~-~~D~i~~~~~lh~ 271 (366)
.+.+|||||||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.. ..|+|++... .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~- 122 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A- 122 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c-
Confidence 468999999999999999999999999999998 7777766542 459999999876 333 2399998652 2
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
....+++.+++.|+|||++++.+... ...++.++.+..|+.+.+++
T Consensus 123 ----~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 123 ----SLSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ----CHHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 23578999999999999999875311 13445666777799877665
Q ss_pred EC-----CCceeEEEEEec
Q 017777 352 SS-----AFNTYIMEFLKS 365 (366)
Q Consensus 352 ~~-----~~~~~vie~~k~ 365 (366)
.. .+.......||+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 169 ELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred EEecCCCCCcEEEEEEecC
Confidence 43 245556666664
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=113.40 Aligned_cols=147 Identities=12% Similarity=0.026 Sum_probs=94.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCCCCCCCCEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFVSVPKGDAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~~~~~D~i~~~~~ 268 (366)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++++...|+.+.....|+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999985 568999998 8888766542 2467888887532223499999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh-CCCCccCCHHHHHHHHHHcCCce
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH-NPGGKERTEQEFRALAKAAGFQG 347 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~~ 347 (366)
+||++++....+++.+.+. .+||. +|... +.. ............+.... ......++.++++++|+++||++
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~~g~l-iIs~~--p~~---~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-AEKRL-IISFA--PKT---LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-cCCEE-EEEeC--Ccc---hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 9999887777788888764 55544 44221 111 00000000000000000 00012347999999999999998
Q ss_pred eEEEECCCc
Q 017777 348 FQVVSSAFN 356 (366)
Q Consensus 348 ~~~~~~~~~ 356 (366)
.........
T Consensus 295 ~~~~~~~~~ 303 (315)
T PLN02585 295 ARREMTATQ 303 (315)
T ss_pred EEEEEeecc
Confidence 866554433
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=102.68 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=72.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CCC-CCCEEEeccccccC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SVP-KGDAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~-~~D~i~~~~~lh~~ 272 (366)
+.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++++|+.+ +.. ..|+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999999999998889999999998 666655432 2579999999876 322 349998865 5442
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..+++.+++.|+|||++++..
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEEc
Confidence 357888999999999999863
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.7e-11 Score=109.73 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=82.9
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCC-CCEEE
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPK-GDAIF 264 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~-~D~i~ 264 (366)
++..++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. -..+++..|.+.+.+. .|+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 344444 23346899999999999999999999999999998 7777776542 2356778888764443 39999
Q ss_pred eccccccC---ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IKWICHDW---SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~lh~~---~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++..+|.. .......+++++.+.|+|||.++|+-.
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999863 234567999999999999999998653
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=111.29 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=79.4
Q ss_pred CCCCeEEEEeCCccHHHHH--HHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCCC---CCCCEEEe
Q 017777 200 EGLNSVVDVGGGIGATLNM--IISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVSV---PKGDAIFI 265 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~---~~~D~i~~ 265 (366)
.++.+|+|||||.|.++.- +...+|+.+++++|. +++++.|++. ++++|+.+|..+.. .+.|+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999998855444 334679999999998 7777766542 57999999998732 23499999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
. ++|+|+.++..++|+++.+.|+|||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999977777899999999999999999954
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=107.37 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=96.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-C-CC-C-CCEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-S-VP-K-GDAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~-~~-~-~D~i~~~~~l 269 (366)
.+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. .++.++..|+.+ + .+ . .|+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35689999999999999988875 467899997 6666655431 356777777654 2 12 2 3999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh----CCCCccCCHHHHHHHHHHcCC
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH----NPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~e~~~ll~~aGf 345 (366)
++.++.. .+|+.+.+.|+|||++++........ . ...... ......... .......+.++|.++++++||
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~~~~~--~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKPGGLVFFSTLNRNLK--S-YLLAIV-GAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCCHH--HHHHHHHHHcCCCcEEEEEecCCChH--H-HHHHHh-hHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 9987654 78999999999999999875421110 0 000000 000000000 001234588999999999999
Q ss_pred ceeEEEE
Q 017777 346 QGFQVVS 352 (366)
Q Consensus 346 ~~~~~~~ 352 (366)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9887753
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-12 Score=105.63 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=94.7
Q ss_pred hccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCCCCCCC--CEEEecc
Q 017777 195 NYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFVSVPKG--DAIFIKW 267 (366)
Q Consensus 195 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~~~~--D~i~~~~ 267 (366)
.++ -....+++|+|||.|.++..|+.++. +++++|. +..++.+++ .++|+++..|+-+..|.+ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 45668999999999999999999874 6888897 777777753 478999999998765654 9999999
Q ss_pred ccccCCh-HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 268 ICHDWSD-EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 268 ~lh~~~~-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
++|++++ ++...+++++..+|+|||.|++..... -... .-|.....+.+.++|++. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-----------------~~c~---~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-----------------ANCR---RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-----------------HHHH---HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-----------------Cccc---ccCcccchHHHHHHHHHH-hh
Confidence 9999986 678899999999999999999976520 0011 123344678888999886 44
Q ss_pred eeEEEE
Q 017777 347 GFQVVS 352 (366)
Q Consensus 347 ~~~~~~ 352 (366)
.++...
T Consensus 174 ~~~~~~ 179 (201)
T PF05401_consen 174 EVERVE 179 (201)
T ss_dssp EEEEEE
T ss_pred heeEEE
Confidence 444433
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=100.26 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=97.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------------------CCCceEEEccCCCCCC-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------------------FPGVEHVGGDMFVSVP- 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~~~~- 258 (366)
..+..+|||+|||.|..+..|++ .+.+++++|+ +..++.+.. ..+|++.++|+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 34567999999999999999998 5789999998 676665311 2468899999997322
Q ss_pred ---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHH
Q 017777 259 ---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 259 ---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
..|+|+-..++|+++.+....+++.+.++|+|||+++++....++.... ++ -...+.+|
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------gP-p~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------GP-PFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------CC-CCCCCHHH
Confidence 2399999999999999999999999999999999766654443322100 00 11357899
Q ss_pred HHHHHHHcCCceeEEEE
Q 017777 336 FRALAKAAGFQGFQVVS 352 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~ 352 (366)
+.+++.. +|.+.....
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9999963 366655443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=102.65 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=95.0
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCC-CCCCC-CE
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFV-SVPKG-DA 262 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~~~~-D~ 262 (366)
.+...++ .-++.++||+|||.|+.+..|++ -+..++.+|. +..++.+++ .-.|+....|+.+ .++.. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 3555555 55678999999999999999999 5778999997 555544322 2358889999887 55544 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
|++..++++++.+....+++++.+.++|||++++...+..++.. .-.+ ....+...|+.+.+.
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p--------~~~~--------~~f~~~~~EL~~~y~- 160 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP--------CPSP--------FPFLLKPGELREYYA- 160 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----------SS----------S--B-TTHHHHHTT-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC--------CCCC--------CCcccCHHHHHHHhC-
Confidence 99999999999998899999999999999999997665432210 0011 112245678888887
Q ss_pred cCCceeEEE
Q 017777 343 AGFQGFQVV 351 (366)
Q Consensus 343 aGf~~~~~~ 351 (366)
|++++...
T Consensus 161 -dW~il~y~ 168 (192)
T PF03848_consen 161 -DWEILKYN 168 (192)
T ss_dssp -TSEEEEEE
T ss_pred -CCeEEEEE
Confidence 68876653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=97.13 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=102.8
Q ss_pred hcccCchHHH----HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCC
Q 017777 166 YHGKDLRFNK----IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAP 241 (366)
Q Consensus 166 ~~~~~~~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 241 (366)
.+.++|+... .|+..+..+....+..+++.+...++...|.|+|||.+.++..+. ...++.-+|+-..
T Consensus 33 lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~----- 104 (219)
T PF05148_consen 33 LFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP----- 104 (219)
T ss_dssp HHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S-----
T ss_pred HHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC-----
Confidence 3445555444 455555666666677788877645566899999999999997654 2357888997322
Q ss_pred CCCCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc
Q 017777 242 AFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD 318 (366)
Q Consensus 242 ~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~ 318 (366)
+-.+...|+.. |.+.. |+++++-.|.. .+...+|+++.|+|||||.|+|.|....-
T Consensus 105 ---n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf--------------- 163 (219)
T PF05148_consen 105 ---NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSRF--------------- 163 (219)
T ss_dssp ---STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG----------------
T ss_pred ---CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEecccC---------------
Confidence 22467789976 87765 99999888865 34678999999999999999999864311
Q ss_pred hhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 319 CIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 319 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
-..+++.+.++..||+..........+.++++.|.
T Consensus 164 ------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 164 ------------ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKI 198 (219)
T ss_dssp ------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred ------------cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence 13567888999999999887777788899999875
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-11 Score=104.19 Aligned_cols=142 Identities=18% Similarity=0.086 Sum_probs=96.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC--C-CCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP--K-GDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~--~-~D~i~~~~~l 269 (366)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. .++++...|+.+ +.+ . .|+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888754 45889997 6666655431 257888888765 222 2 3999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh-hCC-----CCccCCHHHHHHHHHHc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA-HNP-----GGKERTEQEFRALAKAA 343 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~t~~e~~~ll~~a 343 (366)
|+..+.+ .+|+.++++|+|||.+++.....+.. . ......+..+.. ..+ .....+.++|.++++++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 9987664 78999999999999999876422110 0 000000000000 000 11234788999999999
Q ss_pred CCceeEEEE
Q 017777 344 GFQGFQVVS 352 (366)
Q Consensus 344 Gf~~~~~~~ 352 (366)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999987764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=92.61 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=77.2
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC--C-CC-CC
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV--S-VP-KG 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~--~-~~-~~ 260 (366)
+...+. .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|... + .+ ..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444454 55567999999999999999999999999999997 777766543 2578888888653 1 22 33
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
|+|++....+ ....+++.+++.|+|||++++.
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9999876543 2348899999999999999884
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=102.73 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=93.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--CCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK--GDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~D~i~~~~~lh~ 271 (366)
...+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. ++++++.+|++++.+. .|+|+++..++.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999997 7777766532 4689999999875543 399998543322
Q ss_pred ------CChH------------------HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 272 ------WSDE------------------HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 272 ------~~~~------------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
+..+ ....+++++.+.|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 2211 124789999999999999987321
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
....+++.++|+++||+.+++...-
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0124678899999999988876653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-10 Score=98.40 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=91.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC---CCCC--CCEEEeccccccCCh
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV---SVPK--GDAIFIKWICHDWSD 274 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~--~D~i~~~~~lh~~~~ 274 (366)
...+|||||||+|.++..+++. ....++++|+ +++++.++. .+++++.+|+.+ +++. .|+|++++++|++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 4579999999999999888765 4567899998 777776653 468888888865 2433 399999999999876
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-h-h-hhh--hhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-A-S-KVV--IHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~-~-~~~--~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
.. .+|+++.+.++ .+++.-+.......... . . ... ..+...... .+....++.+++.++++++||+++.
T Consensus 91 ~~--~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 91 PE--EILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred HH--HHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCCCEEEE
Confidence 54 67888887655 33332111000000000 0 0 000 000000000 0123456899999999999999987
Q ss_pred EEEC
Q 017777 350 VVSS 353 (366)
Q Consensus 350 ~~~~ 353 (366)
....
T Consensus 165 ~~~~ 168 (194)
T TIGR02081 165 RAAF 168 (194)
T ss_pred EEEe
Confidence 6554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=98.30 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=91.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hh----HHhhCCCCCCceEEEccCCCCC------CCCCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PH----VIQDAPAFPGVEHVGGDMFVSV------PKGDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~~------~~~D~i~~~ 266 (366)
+.+..+|||+|||+|.++..++.... .-+++.+|+ +. +++.+++.++|.++..|+..+. +..|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 56778999999999999999999873 457999997 43 5566665688999999986532 223999887
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
... ++ +...++.++.+.|||||+++|......-+... .-..+-.+|. ++|+++||+
T Consensus 210 va~---pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---PD-QARIVALNAQYFLKNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CCC---cc-hHHHHHHHHHHhccCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HHHHHcCCc
Confidence 641 22 44566778999999999999942211111000 0000002445 889999999
Q ss_pred eeEEEECC
Q 017777 347 GFQVVSSA 354 (366)
Q Consensus 347 ~~~~~~~~ 354 (366)
.++...+.
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99888775
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.5e-10 Score=99.19 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=103.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-CC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-GD 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-~D 261 (366)
+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ...++.++++ .+..+...|.+++... .|
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 34566666 44445999999999999999999999999999997 6677777764 2335677788875544 59
Q ss_pred EEEeccccccCC---hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 262 AIFIKWICHDWS---DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 262 ~i~~~~~lh~~~---~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
.|+++--+|.=- ..-..++++...+.|++||.|.|+-. +.......+++
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan----------------------------~~l~y~~~L~~ 278 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN----------------------------RHLPYEKKLKE 278 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc----------------------------CCCChHHHHHH
Confidence 999999998622 22234899999999999999998754 11111233333
Q ss_pred HHHHcCCceeEEEECCCceeEEEEEec
Q 017777 339 LAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 339 ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+ |..+++....+++.|+.++|.
T Consensus 279 ~-----Fg~v~~la~~~gf~Vl~a~k~ 300 (300)
T COG2813 279 L-----FGNVEVLAKNGGFKVLRAKKA 300 (300)
T ss_pred h-----cCCEEEEEeCCCEEEEEEecC
Confidence 3 455677777889999988874
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-11 Score=100.97 Aligned_cols=98 Identities=23% Similarity=0.310 Sum_probs=78.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-CC-CEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-KG-DAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~-D~i~~~~~lh~ 271 (366)
...+|||+|||+|.++..+++..|+.+++.+|+ +.+++.++++ .+++++..|.++..+ .. |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 468999999999999999999999999999998 7777776542 338899999998665 33 99999988876
Q ss_pred CCh---HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 272 WSD---EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 272 ~~~---~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
-.+ .-..++++.+.+.|+|||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 543 235689999999999999997754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=97.95 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=80.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCCC---------CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS---------VP 258 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~ 258 (366)
+.++.+.+.-+.+..+|||||||+|.++..+++.. +..+++++|+.++ ...++++++++|+.++ .+
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhC
Confidence 44555555534567899999999999999999986 4568999998553 2236799999998873 33
Q ss_pred C--CCEEEeccccccCChHH---------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 K--GDAIFIKWICHDWSDEH---------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~--~D~i~~~~~lh~~~~~~---------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. .|+|++..+.|...... ...+|+.+.++|+|||++++...
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 29999987776654321 24689999999999999999653
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.9e-11 Score=103.10 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccC-CC-C--CCCC--CEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDM-FV-S--VPKG--DAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~-~~-~--~~~~--D~i~~~~ 267 (366)
...+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ .++++++++|+ .. + ++.+ |+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999998 778776653 25799999998 33 3 4433 9998865
Q ss_pred ccccCCh------HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 268 ICHDWSD------EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 268 ~lh~~~~------~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
....... .....+|++++++|+|||++++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5432211 113578999999999999999864
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-10 Score=100.24 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CC----ceEEEccCCCCCCCCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PG----VEHVGGDMFVSVPKGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~----v~~~~~D~~~~~~~~D~i~~~~~lh~ 271 (366)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.++++ .+ +.+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 3568999999999999987766544 36999998 7888777643 22 22222221 34999875332
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+....+++++.+.|+|||++++...... ..+++.+.+++.||+++++.
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 3346789999999999999999754211 24577889999999999888
Q ss_pred ECCCceeEE
Q 017777 352 SSAFNTYIM 360 (366)
Q Consensus 352 ~~~~~~~vi 360 (366)
..+...+++
T Consensus 238 ~~~~W~~~~ 246 (250)
T PRK00517 238 ERGEWVALV 246 (250)
T ss_pred EeCCEEEEE
Confidence 876665553
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=98.95 Aligned_cols=135 Identities=21% Similarity=0.231 Sum_probs=96.6
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--CCEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK--GDAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~D~i~~~~~l 269 (366)
..+..+|||+|||+|..+..++...|+.+++++|+ +.+++.++++ .++.++.+|++++.+. .|+|+++.-.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999998 7777665532 5799999999875542 3999885322
Q ss_pred cc------CCh------------------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC
Q 017777 270 HD------WSD------------------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN 325 (366)
Q Consensus 270 h~------~~~------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (366)
.. +.+ +....+++++.+.|+|||++++.-. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---Y---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---c----------------------
Confidence 11 111 1235789999999999999988210 0
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEEEC-CCceeEEEEE
Q 017777 326 PGGKERTEQEFRALAKAAGFQGFQVVSS-AFNTYIMEFL 363 (366)
Q Consensus 326 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~ 363 (366)
...+++.+++.+.||..+++... .+.-.++.++
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 11356889999999997776543 3444454443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=92.50 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=89.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CC-ceEEEccCCCCCCC--CCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PG-VEHVGGDMFVSVPK--GDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~~~~~--~D~i~~~~~ 268 (366)
.+..+|||+|||+|.++..++.. +.+++++|+ +.+++.+++. .+ +.++.+|+.++.++ .|+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 35678999999999999999887 578999998 7777766432 12 88899998875543 399988654
Q ss_pred cccCC-------------------hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 269 CHDWS-------------------DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 269 lh~~~-------------------~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
++..+ ......+++++.++|+|||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43211 1224578999999999999988754210
Q ss_pred cCCHHHHHHHHHHcCCceeEEEEC
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
...+++.+++.++||++......
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeec
Confidence 12356788999999998776544
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-10 Score=95.99 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=84.8
Q ss_pred EEecc-hhHHhhCCCC---------CCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 017777 229 INFDL-PHVIQDAPAF---------PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 229 ~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
+++|. +.|++.+++. .+++++++|..+ |++.. |+|++.+++|++++. ..+|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEE
Confidence 36787 8888776421 368999999987 77653 999999999999765 488999999999999999
Q ss_pred EEccccCCCCCCchhhhhhhhcc-hhhHhhCCC-----------CccCCHHHHHHHHHHcCCceeEEEECCCce
Q 017777 296 VAESILPVTPDTSLASKVVIHVD-CIMLAHNPG-----------GKERTEQEFRALAKAAGFQGFQVVSSAFNT 357 (366)
Q Consensus 296 i~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 357 (366)
|.|...++.........+..... ......... ....+.+++.++|+++||+.++......+.
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 99987644311100000000000 000000000 123489999999999999999888775443
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=94.03 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=112.6
Q ss_pred hhhcccCchHHHHHHHHhh----hcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhh
Q 017777 164 FDYHGKDLRFNKIFNNGMS----SHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~m~----~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 239 (366)
+..+..+|.....|+...+ .|....+..+++.+...++...|.|+|||.+.++.. -...++.+|+..+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a~--- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVAV--- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccceeeeeeecC---
Confidence 3345566665555555544 333445666777665455778999999999998861 2236788886433
Q ss_pred CCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 240 APAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 240 a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
+-+++..|+.. |.++. |+++++..|.. .+...++++++|+|+|||.++|.|....-
T Consensus 211 -----~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SRf------------- 269 (325)
T KOG3045|consen 211 -----NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSRF------------- 269 (325)
T ss_pred -----CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhhc-------------
Confidence 34567789887 77654 99998877765 34678999999999999999998863211
Q ss_pred cchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 317 VDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 317 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
.+...+.+.|...||.+.........+.++++.|.
T Consensus 270 --------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~ 304 (325)
T KOG3045|consen 270 --------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKT 304 (325)
T ss_pred --------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecC
Confidence 12345788899999998887777788888888763
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=95.62 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=110.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhCCC------CCCc-eEEEccCCCC--C----CCCCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDAPA------FPGV-EHVGGDMFVS--V----PKGDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~v-~~~~~D~~~~--~----~~~D~i 263 (366)
..+.+||||.||.|.+....+..+|. .++...|. +..++..++ ...+ +|.++|.|+. . |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 67888886 555555443 2444 9999999972 2 233999
Q ss_pred EeccccccCChHHHH-HHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 264 FIKWICHDWSDEHCV-KFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~-~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
+.+.++..|+|.+.+ ..|+.+.+++.|||+||....-.... .+.....+.-+.....=-.+.||..|+.+|+++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----le~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----LEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEA 288 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----hHHHHHHHhcccCCCceEEEecCHHHHHHHHHH
Confidence 999999999998744 57999999999999999876433221 111111111100000001256899999999999
Q ss_pred cCCceeEEEEC-CCceeEEEEEe
Q 017777 343 AGFQGFQVVSS-AFNTYIMEFLK 364 (366)
Q Consensus 343 aGf~~~~~~~~-~~~~~vie~~k 364 (366)
|||+-+...-. .+=++|..++|
T Consensus 289 aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 289 AGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred cCCchhhheeccCCceEEEeecC
Confidence 99986654433 35556665553
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-10 Score=96.49 Aligned_cols=138 Identities=13% Similarity=0.137 Sum_probs=106.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCC--CCCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVP--KGDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~--~~D~i~~ 265 (366)
.....+|||+|||+|..+..++++.+.++++++++ +.+.+.|++. +||++++.|+.. ..+ ..|+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44589999999999999999999999999999998 7777777653 799999999876 222 2399999
Q ss_pred ccccccCChH----------------HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 266 KWICHDWSDE----------------HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 266 ~~~lh~~~~~----------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
+--++.-+.. ...++++.+++.|||||++.++-..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-----------------------------
Confidence 8766644332 1368899999999999999987431
Q ss_pred cCCHHHHHHHHHHcCCceeEEEECC------CceeEEEEEecC
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVSSA------FNTYIMEFLKSA 366 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~k~~ 366 (366)
-...||.+++.+.+|...++..+. ...-+++++|++
T Consensus 173 -erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 173 -ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred -HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 014578889999999887765542 455677887763
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-10 Score=99.83 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=75.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-C---CCCC--CEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-S---VPKG--DAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~---~~~~--D~i~~~~ 267 (366)
...+|||||||+|.++..+++++|+..++++|+ +.+++.+++ ..+++++.+|+.+ + .+.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999999999999999998 777766543 2589999999865 2 3432 8887765
Q ss_pred ccccCChHH------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 268 ICHDWSDEH------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 268 ~lh~~~~~~------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+++.... ...+++.+.++|||||.|++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 433222110 14689999999999999988653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-09 Score=97.09 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=94.8
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEec------
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIK------ 266 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~------ 266 (366)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++.+|++++.+. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 7787766642 3599999999886654 4999885
Q ss_pred -------cccccCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 267 -------WICHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 267 -------~~lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
.++++-|. .....+++.+.+.|+|||++++ |...
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~---------------------------- 246 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGN---------------------------- 246 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECc----------------------------
Confidence 22332221 1356889999999999998876 2210
Q ss_pred cCCHHHHHHHHH-HcCCceeEEEECC-CceeEEEEEe
Q 017777 330 ERTEQEFRALAK-AAGFQGFQVVSSA-FNTYIMEFLK 364 (366)
Q Consensus 330 ~~t~~e~~~ll~-~aGf~~~~~~~~~-~~~~vie~~k 364 (366)
...+.+.+++. +.||..+++...- +...++.+++
T Consensus 247 -~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 247 -WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred -cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 01345666777 4689877776653 4445555554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=99.15 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=91.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc--
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI-- 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~-- 268 (366)
+..+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++.+|++++.+. .|+|+++--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999998 8888776642 4689999999875553 399998511
Q ss_pred -----------cccCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 269 -----------CHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 269 -----------lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
+++.|. +....+++.+.+.|+|||++++ |.-
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~-e~g--------------------------- 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVG--------------------------- 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE-EEC---------------------------
Confidence 111111 1236789999999999999876 210
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECCCce
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSAFNT 357 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 357 (366)
.+.+++.+++.+.||.-........++
T Consensus 253 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~ 279 (284)
T TIGR03533 253 ---NSMEALEEAYPDVPFTWLEFENGGDGV 279 (284)
T ss_pred ---cCHHHHHHHHHhCCCceeeecCCCcEE
Confidence 013457778888888776655554443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.3e-10 Score=100.92 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=72.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC---CeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC--CEEEeccccccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS---IKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG--DAIFIKWICHDW 272 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~ 272 (366)
...+|||||||+|.++..+++.++. ..++++|+ +.+++.+++ .+++.+..+|..+ |++.+ |+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 4578999999999999999988774 36899998 888887764 3789999999887 76653 999875431
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+++++++|+|||+++++.+
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeC
Confidence 236789999999999999754
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-09 Score=89.67 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=97.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC---CCCCC--CEEEeccccccCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV---SVPKG--DAIFIKWICHDWS 273 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i~~~~~lh~~~ 273 (366)
+++.+|||+|||.|.++..|.+. .++++.++++ ++.+..+. ..++.++++|+.+ .+|+. |.|+++.+|..+.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999888875 6889999987 44343332 2578899999877 46654 9999999998876
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEccccCC----------CCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHc
Q 017777 274 DEHCVKFLKNCYEALPVNGKVIVAESILPV----------TPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAA 343 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~lli~e~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 343 (366)
.++ .+|+++.|+ |.+.+|.=+-... .+.+........+++ +|+=+..|..+++++.++.
T Consensus 90 ~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 RPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHC
Confidence 654 678887665 5555553221100 000000000011111 3555667999999999999
Q ss_pred CCceeEEEECCC
Q 017777 344 GFQGFQVVSSAF 355 (366)
Q Consensus 344 Gf~~~~~~~~~~ 355 (366)
|+++.+...+.+
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999998877643
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=88.58 Aligned_cols=101 Identities=22% Similarity=0.255 Sum_probs=81.3
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC---CCCCCC
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV---SVPKGD 261 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~D 261 (366)
.+..+. ..+..+++|||||+|..+.+++...|..+++.+|. +++++..++ .++++++.+|.-+ +.+..|
T Consensus 26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 344555 77889999999999999999999899999999996 666665543 2899999999766 334459
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.||+...-. ...+|+.+...|||||+|++.-.
T Consensus 105 aiFIGGg~~------i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 105 AIFIGGGGN------IEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred EEEECCCCC------HHHHHHHHHHHcCcCCeEEEEee
Confidence 999987732 34889999999999999998543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=95.55 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=75.1
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP-- 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~-- 258 (366)
..+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ .+++++.+|..+..+
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 34555554 55678999999999999998888764 558999998 7777666532 358899999877333
Q ss_pred -CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 -KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
..|+|++...+++++ +++.+.|+|||+|++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 239999998887654 3567899999999884
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-09 Score=98.45 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=96.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCC-C--CCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVP-K--GDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~-~--~D~i~~~~~lh 270 (366)
+..+|||+|||+|.++..++...|+.+++++|+ +.+++.++++ .+++++.+|+++ ..+ . .|+|+++--..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999998 8888877653 478999999976 333 2 39999864321
Q ss_pred cCCh-----------------------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 271 DWSD-----------------------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 271 ~~~~-----------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
.-.+ +-...+++.+.+.|+|||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 1000 1134778888899999998765 3211
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEEe
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFLK 364 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k 364 (366)
...+.+.+++++.||..+++...- +...++.+++
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 114578889999999988877654 4455555554
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-09 Score=95.70 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=91.8
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCC-CCEEEeccccccCChHHH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPK-GDAIFIKWICHDWSDEHC 277 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~~~~~~ 277 (366)
..+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++. ++++++.+|+.+ ..+. .|+|+++..+++.+..+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46899999999999999988887789999998 8888877753 689999999987 3233 499999888877654322
Q ss_pred ------------------HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 278 ------------------VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 278 ------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
..+++.....|+|+|.++++=. .. + .+ ....+.++++.+
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys---s~------~----~y----------~~sl~~~~y~~~ 201 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS---GR------P----YY----------DGTMKSNKYLKW 201 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe---cc------c----cc----------cccCCHHHHHHH
Confidence 3566777888889987766511 10 0 00 112368899999
Q ss_pred HHHcCCce
Q 017777 340 AKAAGFQG 347 (366)
Q Consensus 340 l~~aGf~~ 347 (366)
|+++||..
T Consensus 202 l~~~g~~~ 209 (279)
T PHA03411 202 SKQTGLVT 209 (279)
T ss_pred HHhcCcEe
Confidence 99999974
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=101.16 Aligned_cols=107 Identities=17% Similarity=0.311 Sum_probs=79.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC---CCCCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV---SVPKG 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~ 260 (366)
.+...+. -.....+||||||+|.++..++..+|+..++++|+ +.+++.+.+ ..++.++.+|... .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4555554 33456899999999999999999999999999997 666655432 2689999999743 45544
Q ss_pred --CEEEeccccccCChH-H----HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 --DAIFIKWICHDWSDE-H----CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~-~----~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|.|++.+... |+.. . ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 8888754332 3221 1 14789999999999999999653
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-09 Score=95.78 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=74.3
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc----
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI---- 268 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~---- 268 (366)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++++|+++..+. .|+|+++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 8888777543 4699999998875543 399998621
Q ss_pred ---------cccCCh----------HHHHHHHHHHHHhCCCCcEEEE
Q 017777 269 ---------CHDWSD----------EHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 269 ---------lh~~~~----------~~~~~~L~~~~~~L~pgG~lli 296 (366)
+++.|. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 121121 2246889999999999999887
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-09 Score=93.42 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=76.0
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCC-C--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSV-P-- 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-~-- 258 (366)
..++..+. +.+..+|||||||+|..+..+++.. ++.+++++|. +++++.+++. .+++++.+|..... +
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34555565 6778999999999999998888875 4568999997 7887776542 57999999987632 2
Q ss_pred CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|+|++....+..+ +.+.+.|+|||+|++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 239999887765433 35667899999998853
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-09 Score=90.69 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=73.7
Q ss_pred HhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C-CCC
Q 017777 194 ENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V-PKG 260 (366)
Q Consensus 194 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~-~~~ 260 (366)
..+. .....+|||+|||+|.++..++... +..+++++|. +.+++.++++ +++.++.+|..+ + . +..
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 3444 6677899999999999999988764 5678999998 7787765432 478888888865 2 2 223
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
|+|++... ..+...+|+.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99987532 23345789999999999999986
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=88.19 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=90.8
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------C-CCceEEEccCCCC-CCC--CCEEEecccccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------F-PGVEHVGGDMFVS-VPK--GDAIFIKWICHD 271 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~D~~~~-~~~--~D~i~~~~~lh~ 271 (366)
.+|||+|||.|.++..|++.-=.-..+++|. +.+++.|+. . +.|+|.+.|+.+| +-. .|+|+=..++.-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999998754445788887 777666543 2 3499999999984 322 288766554432
Q ss_pred C------ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCC
Q 017777 272 W------SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 272 ~------~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 345 (366)
+ +.......+..+.+.|+|||.++|..- .+|.+|+.+.++.-||
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFNF 198 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCCe
Confidence 2 222235788999999999999999531 2578999999999999
Q ss_pred ceeEEEECC
Q 017777 346 QGFQVVSSA 354 (366)
Q Consensus 346 ~~~~~~~~~ 354 (366)
+....+|.+
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 998888765
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=89.65 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=72.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCC--CCEEEeccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPK--GDAIFIKWICH 270 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~--~D~i~~~~~lh 270 (366)
..+..+|||+|||+|.++..++.. +..+++++|+ +.+++.++++ .++.++.+|+.+..+. .|+|+++.-.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999988875 3348899998 7777655432 3578888998764443 39999874332
Q ss_pred cCCh-------------------HHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 271 DWSD-------------------EHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 271 ~~~~-------------------~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.-+. .....+++++.+.|+|||+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1111 11346889999999999999986543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-09 Score=92.88 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=75.2
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC---
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP--- 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~--- 258 (366)
..++..+. ..+..+|||||||+|.++..+++..+ +.+++++|. +.+++.++++ ++++++.+|..+..+
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 66788999999999999999998864 467899997 7777766542 579999999876322
Q ss_pred CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
..|+|++.....+. .+.+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 24999987665443 45577899999999885
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-09 Score=95.00 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=82.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC-CCCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP-KGDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~-~~D~i~~~~~lh~ 271 (366)
+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .++.+...+.....+ ..|+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999887764 4458999998 7777776542 345566655333222 33999986543
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+....++.++.+.|+|||++++...... ..+++.+.+++. |+++++.
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi~~~-----------------------------~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGILET-----------------------------QAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeCcHh-----------------------------HHHHHHHHHHcc-CceeeEe
Confidence 2346789999999999999999754211 145666777765 8877765
Q ss_pred ECC
Q 017777 352 SSA 354 (366)
Q Consensus 352 ~~~ 354 (366)
..+
T Consensus 283 ~~~ 285 (288)
T TIGR00406 283 QRE 285 (288)
T ss_pred ccC
Confidence 543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-09 Score=90.42 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=76.2
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC---CCC-CC
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV---SVP-KG 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~-~~ 260 (366)
++..+. .....+|||+|||+|.++..++...|+.+++++|. +.+++.++++ .+++++.+|..+ ... ..
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 444454 56678999999999999999998888889999998 8887766542 578999998754 122 23
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|.+++.. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6655421 12345889999999999999999754
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.6e-09 Score=101.46 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=91.1
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc---
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI--- 268 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~--- 268 (366)
..+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ ++++++.+|+++..+. .|+|+++--
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999998 7788777642 4789999998875443 399998421
Q ss_pred -----------cccCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 269 -----------CHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 269 -----------lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
..+.|. +....+++.+.+.|+|||.+++ |.-.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------------------------
Confidence 111110 1235688899999999999876 3210
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
...+.+.+++.+.||..+++...-
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYKDL 295 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEecC
Confidence 014567888899999988777654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=91.68 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=88.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCce----EEEccCCC-CCC-CCCEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVE----HVGGDMFV-SVP-KGDAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~----~~~~D~~~-~~~-~~D~i~~~~~l 269 (366)
.++.+|||+|||+|.+++..++... .+++++|+ |..++.++++ .++. ....+..+ +.. ..|+|+++= |
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 4789999999999999998877543 37899998 7777777653 3333 22233322 222 349998753 4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
.+-...+...+++.++|||++++.-.+.. ..+...+.+.++||++++
T Consensus 239 ----A~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 239 ----AEVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred ----HHHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEeE
Confidence 23456899999999999999999754321 145677889999999999
Q ss_pred EEECCCceeE
Q 017777 350 VVSSAFNTYI 359 (366)
Q Consensus 350 ~~~~~~~~~v 359 (366)
+.......++
T Consensus 286 ~~~~~eW~~i 295 (300)
T COG2264 286 VLEREEWVAI 295 (300)
T ss_pred EEecCCEEEE
Confidence 8887555444
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-08 Score=88.94 Aligned_cols=121 Identities=19% Similarity=0.118 Sum_probs=87.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCCCCC----C-CCEEEeccccc--
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFVSVP----K-GDAIFIKWICH-- 270 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~~----~-~D~i~~~~~lh-- 270 (366)
..+|||+|||+|.++..+++..|+.+++++|+ +.+++.++++ .+++++.+|+++..+ . .|+|+++--..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999998 8888877653 346889999876332 2 39998864321
Q ss_pred ----cCChH------------------HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCC
Q 017777 271 ----DWSDE------------------HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGG 328 (366)
Q Consensus 271 ----~~~~~------------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
..+++ -...+++.+.+.|+|||++++.-.. +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~--~------------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE--R------------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--c-------------------------
Confidence 11111 1347888899999999999874210 0
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEE
Q 017777 329 KERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 329 ~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
...++.+++++.||+..-...
T Consensus 220 ---~~~~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 220 ---QAPLAVEAFARAGLIARVASS 240 (251)
T ss_pred ---hHHHHHHHHHHCCCCceeeEc
Confidence 134677888999998654443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=87.25 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=83.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------------------CCCceEEEccCCC-CC-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------------------FPGVEHVGGDMFV-SV- 257 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~-~~- 257 (366)
..+..+||+.|||.|.-+..|+. -+.+++++|+ +..++.+.+ ..++++.++|+++ +.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 34568999999999999999988 5678999998 666766411 1479999999998 32
Q ss_pred C----CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 258 P----KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 258 ~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
+ ..|+|+=..+|+.++++...+..+.+.++|+|||.++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 1 2399999999999999999999999999999999999987643
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-09 Score=94.98 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=85.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC--CCCEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP--KGDAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~~D~i~~~~~l 269 (366)
.+..+|||||||+|.+++..++... -+++++|+ |.+++.++++ .++.+. . ..+.+ .+|+|+.+-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 3557999999999999998777543 37899998 7777766653 344332 1 12222 33998865332
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
+-...++..+.+.|+|||++++.-.... ..+++.+.+++ ||++++
T Consensus 236 -----~vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKPGGYLILSGILEE-----------------------------QEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp -----HHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHT-TEEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHHHHHHHHHC-CCEEEE
Confidence 3456888899999999999999655321 14567788877 999998
Q ss_pred EEECCCceeEEEEEe
Q 017777 350 VVSSAFNTYIMEFLK 364 (366)
Q Consensus 350 ~~~~~~~~~vie~~k 364 (366)
....++..++ .++|
T Consensus 281 ~~~~~~W~~l-~~~K 294 (295)
T PF06325_consen 281 EREEGEWVAL-VFKK 294 (295)
T ss_dssp EEEETTEEEE-EEEE
T ss_pred EEEECCEEEE-EEEe
Confidence 8887666555 4444
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-09 Score=95.48 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=75.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCCC-CCEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVPK-GDAIFIKW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~~-~D~i~~~~ 267 (366)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.++++ ++++++.+|..+ ..+. .|+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999998 8888877642 679999999865 2333 49998752
Q ss_pred cccc--CChH-HHHHHHHHHHHhCCCCcEEEEE
Q 017777 268 ICHD--WSDE-HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 268 ~lh~--~~~~-~~~~~L~~~~~~L~pgG~lli~ 297 (366)
++. .+.. ....+++++++.|+|||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 221 1211 1258999999999999999985
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-09 Score=89.13 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=99.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceE-EE---ccCCCCC-C-CCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEH-VG---GDMFVSV-P-KGD 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~-~~---~D~~~~~-~-~~D 261 (366)
+.+++...+ .....++||+|||||..+..|..... +.+++|+ ..|++.+.++.-... .+ .+|.... + ..|
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 334444444 44589999999999999988877544 5678898 889988876532211 11 1233322 2 339
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+|+...||-++.+-+ .++-.+...|+|||.+.+.-...+.+... ...- ......+..-+.+++.
T Consensus 191 Li~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--------~l~p------s~RyAH~~~YVr~~l~ 254 (287)
T COG4976 191 LIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGGF--------VLGP------SQRYAHSESYVRALLA 254 (287)
T ss_pred chhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCCe--------ecch------hhhhccchHHHHHHHH
Confidence 999999999887654 77999999999999999976655543211 0000 0111235677889999
Q ss_pred HcCCceeEEEEC
Q 017777 342 AAGFQGFQVVSS 353 (366)
Q Consensus 342 ~aGf~~~~~~~~ 353 (366)
..||+++++.++
T Consensus 255 ~~Gl~~i~~~~t 266 (287)
T COG4976 255 ASGLEVIAIEDT 266 (287)
T ss_pred hcCceEEEeecc
Confidence 999999988765
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=88.04 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=74.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCCC---------CCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS---------VPK- 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~~- 259 (366)
.+...+....+..+|||+|||+|.++..+++.+ +..+++++|+.+.. ..++++++++|+.++ .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445545678899999999999999998887 56789999984432 246788999998752 232
Q ss_pred -CCEEEeccccc---cCCh------HHHHHHHHHHHHhCCCCcEEEEE
Q 017777 260 -GDAIFIKWICH---DWSD------EHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 -~D~i~~~~~lh---~~~~------~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|+|++....| .|.. +....+|+.+.+.|+|||++++.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 39999854322 1111 12357899999999999999985
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=77.57 Aligned_cols=92 Identities=25% Similarity=0.303 Sum_probs=73.6
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------CCCCceEEEccCCCCC---CCC-CEEEeccccccC
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------AFPGVEHVGGDMFVSV---PKG-DAIFIKWICHDW 272 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~D~~~~~---~~~-D~i~~~~~lh~~ 272 (366)
+|+|+|||.|..+..+++ .+..+++++|. +..++.++ ...++++...|+.+.. +.. |++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67778999997 55555443 1267899999988732 233 999999999875
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 455678999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-09 Score=83.83 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=73.9
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-C--CCCC--CEEEecccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-S--VPKG--DAIFIKWIC 269 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~--~~~~--D~i~~~~~l 269 (366)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+++ . .+.. |+|+++--+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999998 777766553 2579999999977 3 4433 999998776
Q ss_pred ccCCh------HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSD------EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~------~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.... +....+++++.+.|+|||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 54321 124588999999999999998864
|
... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-08 Score=92.45 Aligned_cols=105 Identities=18% Similarity=0.053 Sum_probs=75.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC--C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK--G 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~--~ 260 (366)
.+++... +.+..+|||+|||+|.++..++. .+.+++++|+ +.+++.++.+ .++.+..+|+.+ +.+. .
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 3344333 66778999999999999888665 4678999998 7777655432 457889999987 5543 2
Q ss_pred CEEEecccccc-------CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 DAIFIKWICHD-------WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 D~i~~~~~lh~-------~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|+|++..-+.. ...+-..++|+.+.+.|+|||++++.-
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99998532211 111224689999999999999998864
|
This family is found exclusively in the Archaea. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=87.46 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=73.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------C----------------------
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------P---------------------- 244 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~---------------------- 244 (366)
|-.+..+|||||..|.++..+++.+....++++|+ +..+..|+++ .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55778999999999999999999998888999998 6667766542 0
Q ss_pred --------C-------ceEEEccCCC-CCCCCCEEEeccc----cccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 245 --------G-------VEHVGGDMFV-SVPKGDAIFIKWI----CHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 245 --------~-------v~~~~~D~~~-~~~~~D~i~~~~~----lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
+ ..+...|+.+ ..++.|+|+|-.+ -=+|.|+-...+++++++.|.|||+|++
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 1 1122223333 3345588876433 2367899999999999999999999987
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.2e-08 Score=85.28 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=99.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC--C----------------CCCceEEEc
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP--A----------------FPGVEHVGG 251 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~----------------~~~v~~~~~ 251 (366)
.+.+.+. .....+||..|||.|.-+..|++. +.+++++|+ +.+++.+. . ..+|++.++
T Consensus 28 ~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 28 EYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 3444443 556789999999999999999984 679999998 77776651 1 146899999
Q ss_pred cCCC-CCCC---CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCC-CCchhhhhhhhcchhhHhhCC
Q 017777 252 DMFV-SVPK---GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTP-DTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 252 D~~~-~~~~---~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 326 (366)
|+|+ +... .|+|+=..+|+-++++.+.+..+.+.++|+|||+++++....+... .+++
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP----------------- 167 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP----------------- 167 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC-----------------
Confidence 9998 3222 3999999999999999999999999999999999655554333221 0110
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
...+.+|+.++|. .+|++.....
T Consensus 168 --f~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 168 --FSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ------HHHHHHHHT-TTEEEEEEEE
T ss_pred --CCCCHHHHHHHhc-CCcEEEEEec
Confidence 1136889999999 7888766543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=88.25 Aligned_cols=153 Identities=17% Similarity=0.260 Sum_probs=86.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCcc--HHHHHH-HHhCCCCeEEEecc-hhHHhhCCC----CCC--ceEEEccCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIG--ATLNMI-ISKYPSIKGINFDL-PHVIQDAPA----FPG--VEHVGGDMFVS-- 256 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G--~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~----~~~--v~~~~~D~~~~-- 256 (366)
+...++.+..-.+..++||||||.- ....++ .+..|+.+++-+|. |-++..++. .++ ..++.+|+.+|
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA 135 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence 3344554442237899999999943 234444 44479999999998 777776653 345 88999999873
Q ss_pred ---CCC-------C--CEEEeccccccCCh-HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh
Q 017777 257 ---VPK-------G--DAIFIKWICHDWSD-EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA 323 (366)
Q Consensus 257 ---~~~-------~--D~i~~~~~lh~~~~-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
.|+ . =.+++..+||+.+| ++...+++.++++|.||++|.|.....+..+.. .......+...
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~-----~~~~~~~~~~~ 210 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER-----AEALEAVYAQA 210 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH-----HHHHHHHHHHC
T ss_pred HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH-----HHHHHHHHHcC
Confidence 111 1 46788999999987 577899999999999999999998876432111 11122222221
Q ss_pred hCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 324 HNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 324 ~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
......||.+|+.++|. ||+.++
T Consensus 211 -~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 211 -GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp -CS----B-HHHHHHCCT--TSEE-T
T ss_pred -CCCceecCHHHHHHHcC--CCccCC
Confidence 23567899999999998 888653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=84.77 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=75.4
Q ss_pred CCCeEEEEeCCccHHHHH----HHHhCC----CCeEEEecc-hhHHhhCCCC----------------------------
Q 017777 201 GLNSVVDVGGGIGATLNM----IISKYP----SIKGINFDL-PHVIQDAPAF---------------------------- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~----l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 243 (366)
+..+|.-.||++|.-... +.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999973333 333222 467899998 7777665431
Q ss_pred ---------CCceEEEccCCC-CCC--CC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 244 ---------PGVEHVGGDMFV-SVP--KG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 244 ---------~~v~~~~~D~~~-~~~--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.+|+|..+|..+ ++| .. |+|+|.++|.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347899999987 444 23 99999999999999988999999999999999988854
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.4e-09 Score=88.54 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCeEEEEeCCccHHHHH----HHHh---CC--CCeEEEecc-hhHHhhCCCC---------------------------
Q 017777 201 GLNSVVDVGGGIGATLNM----IISK---YP--SIKGINFDL-PHVIQDAPAF--------------------------- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~----l~~~---~p--~~~~~~~D~-~~~~~~a~~~--------------------------- 243 (366)
+..+|.-+||++|.-... +.+. .. ++++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 568999999999973333 2331 12 467888898 7778776541
Q ss_pred -------CCceEEEccCCC-CCCC-C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 244 -------PGVEHVGGDMFV-SVPK-G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 244 -------~~v~~~~~D~~~-~~~~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+|.|...|..+ +.+. . |+|+|.|||-+|+++...++++++++.|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 469999999998 3332 3 999999999999999899999999999999999999553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.6e-09 Score=67.46 Aligned_cols=51 Identities=51% Similarity=0.774 Sum_probs=43.1
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
++|++|++|||||.|.+.+ ++|+|..||+.++...+|..+..++|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5899999999999999874 47999999999999446667889999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=91.10 Aligned_cols=98 Identities=24% Similarity=0.269 Sum_probs=73.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCC--CCC--CCCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFV--SVP--KGDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~~~--~~D~i 263 (366)
+++.+||+||||.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ ..+ ..|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999987645557899998 888877654 2579999999876 222 23999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhCCCCcEEEEE
Q 017777 264 FIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 264 ~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~ 297 (366)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854333222221 257899999999999998874
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-08 Score=85.67 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=72.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC---CC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP---KG 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---~~ 260 (366)
.++..+. ..+..+|||||||+|..+..+++... +++++|. +.+++.+++. .+++++.+|..+..+ ..
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4444454 66778999999999999987777643 7888887 7777666532 468999999876433 24
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998766543 3456789999999988543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-07 Score=83.71 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=92.2
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-CCEEEeccc--ccc--
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-GDAIFIKWI--CHD-- 271 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-~D~i~~~~~--lh~-- 271 (366)
+|||+|||+|..+..++.++|+++++++|+ |.+++.|+++ .++.++.+|.+++.+. .|+|+++-- -..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999998 8888777653 4566777788886553 499988521 111
Q ss_pred -C-C-----------------hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCC
Q 017777 272 -W-S-----------------DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERT 332 (366)
Q Consensus 272 -~-~-----------------~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 332 (366)
. + -+-...+++.+.+.|+|||.+++-.. . -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~-----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-L-----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-C-----------------------------Cc
Confidence 0 0 01246788899999999887776211 0 01
Q ss_pred HHHHHHHHHHcC-CceeEEEECC-CceeEEEEE
Q 017777 333 EQEFRALAKAAG-FQGFQVVSSA-FNTYIMEFL 363 (366)
Q Consensus 333 ~~e~~~ll~~aG-f~~~~~~~~~-~~~~vie~~ 363 (366)
.+.+.+++.+.| |..+.+.... +...++.+.
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 567889999999 6766666654 333444433
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.3e-08 Score=83.73 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=83.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC-CCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS-VPK 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-~~~ 259 (366)
..++...+ +.+..+|+|.|.|+|.++..|+.. .|.-+++.+|. ++..+.|+++ +++.+..+|+.+. .++
T Consensus 84 ~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 84 GYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 35666666 888999999999999999999974 57789999997 7777776653 5699999999873 333
Q ss_pred C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 260 G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 260 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
. |+|++ ++|++. ++|.+++++|+|||.+++.-+..+
T Consensus 163 ~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 163 DVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 4 99987 566665 779999999999999999876554
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-08 Score=83.85 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=67.1
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEc--cCCC----CC---CCC-CEEEecccccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGG--DMFV----SV---PKG-DAIFIKWICHD 271 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~--D~~~----~~---~~~-D~i~~~~~lh~ 271 (366)
..++|||||+|..+..++..+. ++++.|. +.+++.++++++++.... .|.+ ++ ++. |+|++..++|.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 4899999999976666666543 6889997 999999998765544321 1221 11 233 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCc-EEEEEcc
Q 017777 272 WSDEHCVKFLKNCYEALPVNG-KVIVAES 299 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG-~lli~e~ 299 (366)
|+-+ .+.+.++++||+.| .+.+...
T Consensus 113 Fdle---~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 113 FDLE---RFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence 8754 78999999998766 6665443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-07 Score=80.32 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=90.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCC-CCCEEEeccccccCChHHHHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVP-KGDAIFIKWICHDWSDEHCVK 279 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~-~~D~i~~~~~lh~~~~~~~~~ 279 (366)
+..++||||+|.|..+..++..+.++.++-.. +.|..+.++ .+++++..|-+...+ ..|+|.|.|+|....++ ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--HH
Confidence 45789999999999999999988874444444 556554443 456666554443333 34999999999665554 58
Q ss_pred HHHHHHHhCCCCcEEEEEcccc--C---CCC--CCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 280 FLKNCYEALPVNGKVIVAESIL--P---VTP--DTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 280 ~L~~~~~~L~pgG~lli~e~~~--~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
+|+.++++|+|+|++++.-... + ..+ ...+.+ .+++ ....-+-..+.+.+.|+.+||++++...
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~~-----~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLPV-----KGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcCC-----CCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999999999854321 1 111 111111 1111 0111112234455899999999998877
Q ss_pred CC
Q 017777 353 SA 354 (366)
Q Consensus 353 ~~ 354 (366)
.+
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 64
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-07 Score=92.18 Aligned_cols=98 Identities=24% Similarity=0.322 Sum_probs=73.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC-------------CCceEEEccCCC---CCCC-C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF-------------PGVEHVGGDMFV---SVPK-G 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~---~~~~-~ 260 (366)
+++.+|||||||+|..+..+++ +|. .+++.+|+ +++++.++++ +|++++.+|..+ ..++ .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999986 455 68999998 8888887761 589999999876 2233 4
Q ss_pred CEEEeccccccCChH---HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 DAIFIKWICHDWSDE---HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 D~i~~~~~lh~~~~~---~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|+|++...-...+.. -..++++.+++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987433221111 12468999999999999988853
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.7e-08 Score=88.47 Aligned_cols=99 Identities=19% Similarity=0.091 Sum_probs=73.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------------CCCceEEEccCCC--CC-C-CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------------FPGVEHVGGDMFV--SV-P-KG 260 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~--~~-~-~~ 260 (366)
..++.+||+||||+|..+..+++..+..+++.+|+ +.+++.|++ .+|++++.+|..+ .. + ..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34678999999999999988887655568999998 888887774 2689999999876 22 2 24
Q ss_pred CEEEeccccc---cCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 261 DAIFIKWICH---DWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 261 D~i~~~~~lh---~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
|+|++...-. ....-....+++.+++.|+|||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999863210 011122357899999999999999886
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=78.29 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=79.2
Q ss_pred CCCeEEEEeCCccH----HHHHHHHhCC-----CCeEEEecc-hhHHhhCCCC---------------------------
Q 017777 201 GLNSVVDVGGGIGA----TLNMIISKYP-----SIKGINFDL-PHVIQDAPAF--------------------------- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 243 (366)
+..+|.-+||++|. +++.+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999996 4455566665 467888887 7777766541
Q ss_pred --------CCceEEEccCCC-C-CCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 244 --------PGVEHVGGDMFV-S-VPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 244 --------~~v~~~~~D~~~-~-~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|.|..+|.++ + .+.. |+|+|.|||-+|+.+...+++++.+..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 248999999988 3 4444 99999999999998888899999999999999999954
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=86.41 Aligned_cols=97 Identities=26% Similarity=0.236 Sum_probs=71.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC----------CCceEEEccCCC---CCC--CCCE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV---SVP--KGDA 262 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~--~~D~ 262 (366)
+++.+||+||||.|..+..+++. |. .+++.+|+ +.+++.++++ +|++++.+|... ..+ ..|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46789999999999999999865 54 46888887 7777776542 589999999754 232 3499
Q ss_pred EEeccccccCChH--HHHHHHHHHHHhCCCCcEEEEE
Q 017777 263 IFIKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 263 i~~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~ 297 (366)
|++-..-+..+.. -...+++.+++.|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9985433222221 1357899999999999998764
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=87.12 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=72.8
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCC---C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVP---K 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~---~ 259 (366)
.+++.++ ..+..+|||||||+|.++..+++..+. ..++++|. +.+++.+++ .+++.++.+|..+..+ .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4555554 566789999999999999999988763 46889997 777766553 2578899999766322 2
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 4999987665442 234667899999988854
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-07 Score=78.32 Aligned_cols=100 Identities=14% Similarity=0.267 Sum_probs=76.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVPK-- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~~-- 259 (366)
...++..+. +++..+|||||||+|..+.-|++... +++.+++ ++..+.|++ +.+|.++++|-..-+++
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345666666 78889999999999999998888665 7888886 776776665 26799999999885443
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|.|+..-..-..|+ .+.+-|+|||++++..-
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 499998777655543 24558999999999665
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=85.91 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=72.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--C-CC-CCCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--S-VP-KGDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~-~~-~~D~i~ 264 (366)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|.++ . .+ ..|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999988765667888887 777766554 2578888888765 1 12 349999
Q ss_pred eccccccCChHH--HHHHHHHHHHhCCCCcEEEEE
Q 017777 265 IKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 265 ~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~ 297 (366)
+......-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865532222222 358899999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=80.36 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC--CCCCC--CEEEecccccc---
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV--SVPKG--DAIFIKWICHD--- 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~--~~~~~--D~i~~~~~lh~--- 271 (366)
...-|||||||+|..+..|.. ++...+++|+ |.|++.+.+. -.-.++.+|+-+ |++.+ |.+++...+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 378899999999999988877 6688999998 9999988752 124577888877 56555 88776555432
Q ss_pred ------CChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 272 ------WSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 272 ------~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|......++..++..|++|++-++.
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 23344567899999999999998874
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.3e-07 Score=80.06 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC------C---CCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS------V---PKG 260 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~---~~~ 260 (366)
..+..+|||||||+|..+..++...+ +.+++.+|. ++.++.++++ ++++++.+|..+. . +..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999988765 678999997 7777766542 5799999998752 1 134
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+|++- -..+....++..+.+.|+|||.+++-+...
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 999873 223455688999999999999877755443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-07 Score=78.23 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=68.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC--CC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--GD 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--~D 261 (366)
..+++.++ +.+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+. .|
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 35566665 667789999999999999999987 457888887 666665543 3589999999987 5554 38
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+.+- .++...+....+++.. .+.++|.+++..
T Consensus 80 ~vi~n~-Py~~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 80 KVVGNL-PYNISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EEEECC-CcccHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 777654 4444433333333321 133666666644
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=80.94 Aligned_cols=95 Identities=24% Similarity=0.442 Sum_probs=66.3
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------CCCCceEEEccCCC----CCCCC--CEEEecccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------AFPGVEHVGGDMFV----SVPKG--DAIFIKWIC 269 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~D~~~----~~~~~--D~i~~~~~l 269 (366)
..+||||||.|.++..++..+|+..++|+|. ...+..+. ...++.++++|... -++++ |-|++.+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP- 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP- 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-
Confidence 4899999999999999999999999999997 44444332 24899999999876 13323 55544211
Q ss_pred ccCChH-H------HHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSDE-H------CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~-~------~~~~L~~~~~~L~pgG~lli~e 298 (366)
.-|+.. + ...+|+.+.+.|+|||.|.+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 112211 1 2589999999999999998865
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.3e-07 Score=78.73 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=70.8
Q ss_pred CCeEEEEeCCccHHHHHHHHhC---CCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCC-CCEEEeccccccCCh
Q 017777 202 LNSVVDVGGGIGATLNMIISKY---PSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPK-GDAIFIKWICHDWSD 274 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~~~ 274 (366)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++. .++.++..|+.. +... .|+|+++--++....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998875 3568999998 8888888754 679999999976 4433 499999866653321
Q ss_pred ----------HHHHHHHHHHHHhCCCCcEEEE
Q 017777 275 ----------EHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 275 ----------~~~~~~L~~~~~~L~pgG~lli 296 (366)
.-...+++++.++++||+. |+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1134688999997776664 44
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=92.27 Aligned_cols=122 Identities=20% Similarity=0.147 Sum_probs=86.9
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------------------CCceEEEccCCCCCC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------------------PGVEHVGGDMFVSVP 258 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~D~~~~~~ 258 (366)
..+|||+|||+|..+..+++.+|..+++++|+ +.+++.++++ +|++++++|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 36899999999999999999999889999998 7777666321 369999999988543
Q ss_pred ----CCCEEEeccc--cc----cCC--------------------------hH----HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 ----KGDAIFIKWI--CH----DWS--------------------------DE----HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 ----~~D~i~~~~~--lh----~~~--------------------------~~----~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|+|+++-- .. .++ ++ -.+.++..+.+.|+|||.+++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2388887522 10 000 01 125778888889999998775 3
Q ss_pred cccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH-HHHHHcCCceeEEEEC
Q 017777 299 SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR-ALAKAAGFQGFQVVSS 353 (366)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~ 353 (366)
.-. ...+.+. +++++.||+.++++..
T Consensus 278 iG~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG-----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc-----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 211 1134566 5888899998877764
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-06 Score=71.90 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=89.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCC-CCCC-----CCEEEeccccccCChH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-SVPK-----GDAIFIKWICHDWSDE 275 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~-----~D~i~~~~~lh~~~~~ 275 (366)
..++|||||=+...... .++-+.++-+|+... .-.+...||++ |.|. .|+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999986654332 345567888887431 22345679988 7762 2999999999999866
Q ss_pred -HHHHHHHHHHHhCCCCcE-----EEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 276 -HCVKFLKNCYEALPVNGK-----VIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 276 -~~~~~L~~~~~~L~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
++-+.|+++.+.|+|+|. |+|+-+.. + . .+.+-.+.+.|.++++..||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------------C--------v-~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-------------C--------V-TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch-------------H--------h-hcccccCHHHHHHHHHhCCcEEEE
Confidence 455999999999999999 77764321 1 1 266667889999999999999998
Q ss_pred EEECC
Q 017777 350 VVSSA 354 (366)
Q Consensus 350 ~~~~~ 354 (366)
.+...
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 87653
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=85.33 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=77.3
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCC---CC-C-C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVS---VP-K-G 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~~-~-~ 260 (366)
+...++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ .+++++++|..+. .+ . .
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 333444 55678999999999999999999988788999998 7777766542 2478899998762 22 2 3
Q ss_pred CEEEecc------cccc-------CChHH-------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 261 DAIFIKW------ICHD-------WSDEH-------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 261 D~i~~~~------~lh~-------~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
|.|++.- ++.. ...++ ..++|+++.+.|+|||++++....
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9998421 1211 11121 247899999999999999987743
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-07 Score=81.39 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=72.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~- 259 (366)
...+++.+. +.+..+|||||||+|..+.-++..... .+++.+|. +...+.+++. .+|.++++|.....+.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 446777776 888899999999999999988887643 46788886 7777777642 5899999998774442
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|.|++.......|. .+.+.|++||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 399999887765432 25557899999999543
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-07 Score=79.44 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=88.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC--
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP-- 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-- 258 (366)
.++-.++ +.++.+|||.|.|+|.++..|+.. .|.-+++.+|. ++..+.|+++ +++++...|+.+ .++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4555565 888999999999999999999975 47889999997 6666665542 579999999964 342
Q ss_pred --CC-CEEEeccccccCChHHHHHHHHHHHHhC-CCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHH
Q 017777 259 --KG-DAIFIKWICHDWSDEHCVKFLKNCYEAL-PVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 259 --~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L-~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
.. |.|++ ++|++. ..+..+.++| +|||++.+.-+..++ ..
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~ 153 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQ 153 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HH
Confidence 22 98887 556664 6699999999 899999997654322 12
Q ss_pred HHHHHHHHcCCceeEEEEC
Q 017777 335 EFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~~ 353 (366)
...+.|++.||..+++..+
T Consensus 154 ~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEE
Confidence 3346678889988877664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.9e-07 Score=85.50 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=78.0
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C-CceEEEccCCC-CC--C-C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P-GVEHVGGDMFV-SV--P-K 259 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~-~~--~-~ 259 (366)
+...++ ..++.+|||+|||+|..+..+++..++.+++++|. +++++.++++ . ++.+..+|... +. + .
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 344444 55678999999999999999999888778999997 7777665432 1 23336667654 22 2 2
Q ss_pred -CCEEEe------ccccccCChH-------H-------HHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 260 -GDAIFI------KWICHDWSDE-------H-------CVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 260 -~D~i~~------~~~lh~~~~~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
.|.|++ ..+++..|+- + ..++|+.+.+.|||||+|+..+-...
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 399985 2456654431 1 25899999999999999999876553
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=85.64 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=75.6
Q ss_pred HhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC---CCC-CC
Q 017777 194 ENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS---VPK-GD 261 (366)
Q Consensus 194 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~~-~D 261 (366)
..+. ..+..+|||+|||+|..+..+++.. ++.+++++|+ +.+++.++++ .+++++.+|+.+. ++. .|
T Consensus 244 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 244 PALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 3443 5567899999999999999999886 6678999998 7776665432 4589999998762 333 49
Q ss_pred EEEecc------ccccCC-------hHH-------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 262 AIFIKW------ICHDWS-------DEH-------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 262 ~i~~~~------~lh~~~-------~~~-------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+|++.- ++.+.| ..+ ...+|+.+.+.|||||+|+.....
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 998732 121111 111 246899999999999999976543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-06 Score=75.05 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=75.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C------CCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V------PKG 260 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------~~~ 260 (366)
..+..+|||||+++|..+..++...| +.+++.+|. ++..+.|+++ ++|+++.+|..+. . +..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999998875 557888887 7666666542 6899999998651 1 123
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|+|++- -+..+...+++.+.+.|+|||.|++-+....
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 988863 2345667899999999999999888655443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=83.68 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=77.6
Q ss_pred HhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C----CCC-
Q 017777 194 ENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S----VPK- 259 (366)
Q Consensus 194 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~----~~~- 259 (366)
..+. ..++.+|||+|||+|..+..+++... ..+++++|. +.+++.++++ .+|+++++|..+ + ...
T Consensus 246 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 246 PLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred HHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccc
Confidence 3344 55678999999999999999998764 458999997 7777665432 468999999875 3 212
Q ss_pred -CCEEEec------cccccCCh-------HH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 260 -GDAIFIK------WICHDWSD-------EH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 260 -~D~i~~~------~~lh~~~~-------~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.|.|++. .+++..++ ++ ..++|+++.+.|||||+|+..+-..
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3999862 35554443 11 2588999999999999999876443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-06 Score=83.60 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=74.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-C-CCEEEec--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-K-GDAIFIK-- 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~-~D~i~~~-- 266 (366)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++++|..+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44568999999999999988887654 458999998 7777666542 468899999876223 2 3999861
Q ss_pred ----cccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 ----WICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ----~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.++. .++.++ ...+|+++.+.|+|||+|+......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1221 222222 2368999999999999999987554
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-07 Score=84.40 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=68.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------------CCceEEEccCCCC-----CC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------------PGVEHVGGDMFVS-----VP 258 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~D~~~~-----~~ 258 (366)
+..+|||+|||-|+-+..-..... ..++++|+ +..++.|++. -...++.+|.+.. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999998886666665433 26899997 5556555321 1245677877641 22
Q ss_pred -C--C-CEEEeccccccC--ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 -K--G-DAIFIKWICHDW--SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 -~--~-D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. . |+|-+.+.||+. +.+.+..+|+++.+.|+|||++|..-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2 2 999999999985 555677899999999999999998654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-06 Score=74.36 Aligned_cols=95 Identities=24% Similarity=0.418 Sum_probs=68.4
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC----CC--CCCceEEEccCCC---C-CCCC--CEEEecccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA----PA--FPGVEHVGGDMFV---S-VPKG--DAIFIKWIC 269 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~--~~~v~~~~~D~~~---~-~~~~--D~i~~~~~l 269 (366)
..+||||||.|.++..+++.+|+..++|+++ ...+..+ .+ .+++.++++|... . .+.+ |-|++++-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 5899999999999999999999999999996 4443332 22 2489999999765 2 3342 55554321
Q ss_pred ccCChH-H------HHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSDE-H------CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~-~------~~~~L~~~~~~L~pgG~lli~e 298 (366)
.-|+.. + ...+|+.+.+.|+|||.|.+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 122211 1 2479999999999999999865
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.8e-06 Score=80.62 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=74.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C-C-CC-CCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S-V-PK-GDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~-~-~~-~D~i~~~ 266 (366)
..++.+|||+|||+|..+..++... ++.+++.+|+ +.+++.++++ .+++++.+|... + . +. .|.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5567899999999999999999876 4568999998 7777666542 457889999865 2 2 22 3999861
Q ss_pred ------ccccc-------CChH-------HHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 267 ------WICHD-------WSDE-------HCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 267 ------~~lh~-------~~~~-------~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
.++.. ++.+ ...++|.++.+.|||||+|+...-...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22322 1211 125789999999999999888765543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.1e-06 Score=74.76 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=72.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CC--CCCCEEEec-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SV--PKGDAIFIK- 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~--~~~D~i~~~- 266 (366)
..++.+|||+|||+|..+..+++... ...++++|+ +..++.++++ .+++++..|... +. +..|+|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45668999999999999999988774 357899997 7776655432 468888888654 22 234999862
Q ss_pred -----cccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 -----WICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 -----~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.++. .|..++ ..++|+.+.+.|||||+|+...-..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1222 122222 2469999999999999998876544
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.8e-06 Score=72.84 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=78.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEE-ccCCC--C-C--CCCCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVG-GDMFV--S-V--PKGDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~-~D~~~--~-~--~~~D~i 263 (366)
..+..+||+||.+.|..+..++...| +.+++.+|. ++..+.|+++ ++|+.+. +|..+ . . +..|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 888999998 8888877763 5688887 57665 2 1 233999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|+- ....+...+|..+.+.|+|||.+++-+...+
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 863 2344567899999999999999988666554
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-06 Score=73.48 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=67.7
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------------CCCceEEEccC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------------FPGVEHVGGDM 253 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D~ 253 (366)
..+++.+. +.+...++|||||.|......+..++--+.+|+++ +...+.++. ..++++..+|+
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 34566665 77788999999999999888777665444888886 444333221 25688899999
Q ss_pred CC-CC-----CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC
Q 017777 254 FV-SV-----PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT 304 (366)
Q Consensus 254 ~~-~~-----~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 304 (366)
.+ +. .++|+|++++... + ++...-|.+....||||.+++-.....+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 87 32 3469999998864 3 455666788888999999998877666554
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-06 Score=75.35 Aligned_cols=144 Identities=16% Similarity=0.136 Sum_probs=89.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEE----ccCCCCC--CC--CCEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVG----GDMFVSV--PK--GDAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~----~D~~~~~--~~--~D~i 263 (366)
...++||||||+|.....++.+.++.+++++|+ +.+++.|++. .+|++.. .+++... +. .|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 467999999999988888888889999999998 7777776542 3566653 2333322 22 3999
Q ss_pred EeccccccCChHH---HHHHHHHHH----------------HhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh
Q 017777 264 FIKWICHDWSDEH---CVKFLKNCY----------------EALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH 324 (366)
Q Consensus 264 ~~~~~lh~~~~~~---~~~~L~~~~----------------~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (366)
+++--+|.-..+. ...-.+++. +.+.+||.+-++..+..+. ..+.... .++..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~-gwftsm 266 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQV-LWFTSL 266 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhC-cEEEEE
Confidence 9998887633321 111222222 2334666665555544332 0011111 111111
Q ss_pred CCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 325 NPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 325 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
-++.-+...+.+.|++.|.+.+.+...
T Consensus 267 --v~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 267 --VSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred --eeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 255568999999999999987777665
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-06 Score=71.57 Aligned_cols=101 Identities=19% Similarity=0.115 Sum_probs=65.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------CCCceEEEccCCCCC------C-CCCE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------FPGVEHVGGDMFVSV------P-KGDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~------~-~~D~ 262 (366)
..++.+|||+|||+|..+..++...+..+++.-|.+++++..+. ..++.+...|..++. + ..|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999888867778888897556553322 256788887764421 2 2399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+.+.++|+ ++....+++.+.++|+|+|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999996 4566799999999999999977776554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.19 E-value=9e-06 Score=73.92 Aligned_cols=112 Identities=15% Similarity=0.303 Sum_probs=77.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC----CCceEE--EccCC---CCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF----PGVEHV--GGDMF---VSV 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~v~~~--~~D~~---~~~ 257 (366)
+.++...++ --.+.+|||+|+|.|..+-++.+.++.. +++.+|. +.+.+.++.. ...... ..++. .++
T Consensus 22 l~El~~r~p-~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLP-DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCc-CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 444555555 2346799999999999888888888744 4688896 7776655431 111110 11111 133
Q ss_pred CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 258 PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 258 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
+..|+|+++++|..+++.....+++++-+.+.+ .|+|+|+-.+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 445999999999999887788999999887765 99999975544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.8e-06 Score=73.63 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=61.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKGD- 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~D- 261 (366)
...+++.++ ..+..+|||||||+|.++..++++.+. ++++|. +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 445666665 667789999999999999999998865 777775 666655543 3689999999987 555334
Q ss_pred -EEEeccccccCChHHHHHHHHHHHH
Q 017777 262 -AIFIKWICHDWSDEHCVKFLKNCYE 286 (366)
Q Consensus 262 -~i~~~~~lh~~~~~~~~~~L~~~~~ 286 (366)
.+++++.-++++. .++.++..
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHhc
Confidence 3444444444443 44444443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-06 Score=75.15 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-----C--CCCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-----V--PKGD 261 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-----~--~~~D 261 (366)
.++.+||+||+++|..+..+++..| +.+++.+|. ++..+.|++. ++|+++.+|..+ + . ...|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4679999999999999999999987 578999997 7676666542 689999999865 1 1 1239
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
+|++-. ...+....+..+.+.|+|||.|++-+...
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 998743 23456788999999999999999876654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=73.01 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=60.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCCCE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKGDA 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~D~ 262 (366)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++++|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 445666555 5667899999999999999999984 47888887 666665543 3679999999987 6665587
Q ss_pred EEeccccccCCh
Q 017777 263 IFIKWICHDWSD 274 (366)
Q Consensus 263 i~~~~~lh~~~~ 274 (366)
|+++-- |+.+.
T Consensus 95 Vv~NlP-y~i~s 105 (258)
T PRK14896 95 VVSNLP-YQISS 105 (258)
T ss_pred EEEcCC-cccCc
Confidence 776544 44443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.9e-06 Score=74.94 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=68.9
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC-CEEEeccccccC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-DAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~ 272 (366)
.+.|||||||+|.++...+++.. .++..++..+|.+.|++. +||.++.|.+.+ +.|+. |+|+.--.=+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 57899999999999987777543 378888888887777642 799999999998 88876 999875333322
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
-.+...+---..++.|+|.|.++=
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCcccC
Confidence 233333333346799999998753
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-05 Score=63.48 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=87.3
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhh-CCCCCCceEEEccCCC-C-----CC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQD-APAFPGVEHVGGDMFV-S-----VP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~-a~~~~~v~~~~~D~~~-~-----~~ 258 (366)
.++.+...++ +..+.-||++|.|+|.++.+++.+. +.-..+.++. ++.... -+.++.++++.+|.+. . ++
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 3455666666 7788899999999999999988864 4555666664 544443 3456889999999886 2 22
Q ss_pred --CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 259 --KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 259 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..|.|++.--+-++|.....++|+.+...|++||.++.....
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 239999998888889888899999999999999999987764
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.4e-06 Score=74.55 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~ 262 (366)
..+++.+. .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 45565555 56678999999999999999999876 6788887 7777776543 689999999987 55432 55
Q ss_pred EEeccccccCCh
Q 017777 263 IFIKWICHDWSD 274 (366)
Q Consensus 263 i~~~~~lh~~~~ 274 (366)
|+. +.-++.+.
T Consensus 109 vv~-NlPY~iss 119 (272)
T PRK00274 109 VVA-NLPYNITT 119 (272)
T ss_pred EEE-eCCccchH
Confidence 554 44455443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.7e-06 Score=81.32 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=76.1
Q ss_pred chhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCC---CCCCeEEEEeCCccHHHHHHHHhC----CCCeEEEecc-h
Q 017777 163 AFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGF---EGLNSVVDVGGGIGATLNMIISKY----PSIKGINFDL-P 234 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~ 234 (366)
.|+.+++|+-....|.+++.. .+.+..... .+...|+|||||+|-++...+++. ...+++.++- +
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 466677887777777776532 233322211 135789999999999988776654 3568888885 4
Q ss_pred hHHhhC----CC---CCCceEEEccCCC-CCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 017777 235 HVIQDA----PA---FPGVEHVGGDMFV-SVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 235 ~~~~~a----~~---~~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
.++... ++ .++|+++.+|+.+ ..|+. |+|++-..=.....+-....|....+.|||||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 333221 11 2789999999998 66655 99987432211112233456888889999997654
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.2e-06 Score=76.00 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=70.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-C-CCCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-P-KGDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~-~~D~i~ 264 (366)
.++.+||.||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|.+. .. + ..|+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999988666667888888 888887764 2689999999876 22 2 249999
Q ss_pred eccccccC---ChH--HHHHHHH-HHHHhCCCCcEEEEE
Q 017777 265 IKWICHDW---SDE--HCVKFLK-NCYEALPVNGKVIVA 297 (366)
Q Consensus 265 ~~~~lh~~---~~~--~~~~~L~-~~~~~L~pgG~lli~ 297 (366)
+-.. ..+ +.. -..++++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 7521 111 000 0246787 899999999998764
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-05 Score=76.58 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=68.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC-----
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS----- 256 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~----- 256 (366)
...+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++++|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344455444 4556899999999999999999875 57899997 8888776642 4799999998652
Q ss_pred CCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 257 VPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 257 ~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
++. .|+|++.--- .....+++.+.+ ++|++.+++.
T Consensus 363 ~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLDPPR-----AGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhcCCCCEEEECcCC-----cChHHHHHHHHh-cCCCeEEEEE
Confidence 222 3998874222 112344555555 6888877774
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=69.64 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCC--C--CCCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSV--P--KGDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~--~--~~D~i~~~~~l 269 (366)
...+|||+|||+|.++..++.+.. .+++++|. +.+++.++++ .+++++++|+++.. . ..|+|++.--+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666553 58899987 6666655432 47899999987622 2 24999987664
Q ss_pred ccCChHHHHHHHHHHHH--hCCCCcEEEEEc
Q 017777 270 HDWSDEHCVKFLKNCYE--ALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~--~L~pgG~lli~e 298 (366)
+. . -...+++.+.. +|+|++.+++-.
T Consensus 132 ~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 132 RK-G--LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CC-C--hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 32 1 12344555554 378887666643
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=72.53 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=74.0
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhH-HhhCCCC--------C----CceEEEccCCC--
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHV-IQDAPAF--------P----GVEHVGGDMFV-- 255 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~~a~~~--------~----~v~~~~~D~~~-- 255 (366)
.++..+. ++...++|+|||-|+-+..--++.-+ .++++|++++ ++.+++. . .+.|+++|-+.
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 3455553 56678999999999877665553222 5799998444 6666532 1 36788888654
Q ss_pred -----CC--CCCCEEEecccccc-C-ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 256 -----SV--PKGDAIFIKWICHD-W-SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 256 -----~~--~~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+. |..|+|-|.+++|+ | +.+.++.+|+++.+.|+|||++|-.
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 11 22499999999997 4 4456789999999999999999864
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.1e-05 Score=61.32 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=86.4
Q ss_pred CCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC----C-CCceEEEccCCCCC-CCC-CEEEeccccccC
Q 017777 202 LNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA----F-PGVEHVGGDMFVSV-PKG-DAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~D~~~~~-~~~-D~i~~~~~lh~~ 272 (366)
+.-++|||||+|..+..|++.. |+......|+ |++++...+ + -++..+..|+.+.. ++. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999888875 6777788898 777765332 1 45778888988733 233 888876433221
Q ss_pred ChHH-------------------HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCH
Q 017777 273 SDEH-------------------CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTE 333 (366)
Q Consensus 273 ~~~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 333 (366)
++++ ..++|..+-..|.|.|.+++.-...+ .+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-----------------------------~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-----------------------------KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------------------------CH
Confidence 2211 23555556666677777766433211 25
Q ss_pred HHHHHHHHHcCCceeEEEEC---CCceeEEEEEe
Q 017777 334 QEFRALAKAAGFQGFQVVSS---AFNTYIMEFLK 364 (366)
Q Consensus 334 ~e~~~ll~~aGf~~~~~~~~---~~~~~vie~~k 364 (366)
+|+..++++-||.......- +...+++.+.|
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEEe
Confidence 67778889999986554432 24556666554
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.5e-06 Score=72.26 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=73.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
....++|+|||.|.++. .+|.+-.++.|+ ...+.-+++.........|+.. |+++. |.++...++|||....
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 47889999999998764 238888999998 5555555554444677788887 66643 9999999999997654
Q ss_pred -HHHHHHHHHHhCCCCcEEEEEc
Q 017777 277 -CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 277 -~~~~L~~~~~~L~pgG~lli~e 298 (366)
...+++++.+.++|||..+|.-
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEE
Confidence 4599999999999999977744
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.7e-05 Score=67.69 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=68.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEc----cCCCCCC--CC--CE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGG----DMFVSVP--KG--DA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~----D~~~~~~--~~--D~ 262 (366)
+.....|||+|||+|..+..+++..|+++++.+|. +.++..+.++ +++.++.. |.+.+.+ .+ |+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 44566899999999999999999999999999997 6666555442 67777744 4444333 33 88
Q ss_pred EEec--ccccc-C---------------------ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 263 IFIK--WICHD-W---------------------SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 263 i~~~--~~lh~-~---------------------~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
++++ ++.+. + .-+....++.-+.+.|+|||.+.+-
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 8775 22221 0 0012356777788999998888774
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=71.88 Aligned_cols=97 Identities=25% Similarity=0.353 Sum_probs=76.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCC---CCCC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV---SVPK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~-~D~i~ 264 (366)
+++++||-||+|.|..+..+++..+--+++.+|+ +.+++.++++ +|++++..|..+ ..+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4457999999999999999999887778999998 9999888763 789999999876 3443 49998
Q ss_pred eccccccCCh-H--HHHHHHHHHHHhCCCCcEEEEE
Q 017777 265 IKWICHDWSD-E--HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 265 ~~~~lh~~~~-~--~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+-..=.. .. + --..+++.++++|+|+|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8544321 11 0 0248999999999999999987
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.5e-05 Score=71.55 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=63.5
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~ 259 (366)
...+++... .....+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 445666555 66778999999999999999998753 5777776 666665543 3679999999987 5555
Q ss_pred CCEEEeccccccCChHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L 281 (366)
.|+|+. +.-++++.+....+|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 587664 555666655544444
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00015 Score=63.87 Aligned_cols=146 Identities=15% Similarity=0.106 Sum_probs=82.2
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHh-hCCCCCCceE-EEccCCC----CCC--
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQ-DAPAFPGVEH-VGGDMFV----SVP-- 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~~-~~~D~~~----~~~-- 258 (366)
.+..+++.++......++||+|||+|.++..+++. +-.+++++|. +.++. ..++.+++.. ...|+.. +.+
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 35566666652235678999999999999999986 3457999998 43444 4555566542 3334432 111
Q ss_pred --CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE-EccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHH
Q 017777 259 --KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV-AESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 259 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
..|+.+++.. .+|..+.++|+| |.+++ +.+-..-.+... ...-...|-. .......+
T Consensus 141 ~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~--~~~giv~~~~-------~~~~~~~~ 200 (228)
T TIGR00478 141 FATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKK--NKKGVVRDKE-------AIALALHK 200 (228)
T ss_pred ceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhc--CcCCeecCHH-------HHHHHHHH
Confidence 1266655433 358889999999 65554 332221111000 0000000100 01123566
Q ss_pred HHHHHHHcCCceeEEEECC
Q 017777 336 FRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~~ 354 (366)
+...+.+.||++....+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHcCCCeEeeEEECC
Confidence 7778888899988776643
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.1e-05 Score=70.10 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=73.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC--CC--------CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV--SV--------PK 259 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~--------~~ 259 (366)
..+..+||+||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.+|..+ +. ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34578999999999999999998874 678899987 666666543 2789999998765 21 12
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.|+|++-. ........++.+.+.|+|||.|++-+...
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 39998742 23456788999999999999977744443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.4e-05 Score=69.09 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCCCC-CCCCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFVSV-PKGDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~-~~~D~i~~~ 266 (366)
.+++.+||=||||.|..+.++++. |. +++.+|+ +++++.++++ +|++++. .+.+.. ...|+|+.-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEEc
Confidence 457899999999999999999985 54 8888887 8888877762 6777775 222222 234999976
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.. ++ ..+.+.++++|+|||.++..-
T Consensus 147 s~----~~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CC---hHHHHHHHHhcCCCcEEEECC
Confidence 43 12 367899999999999998853
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.6e-05 Score=70.37 Aligned_cols=104 Identities=16% Similarity=0.259 Sum_probs=74.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC----CCCeEEEecc-hhHHhhC----C--CCCCceE--EEccCCCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY----PSIKGINFDL-PHVIQDA----P--AFPGVEH--VGGDMFVS 256 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a----~--~~~~v~~--~~~D~~~~ 256 (366)
..+...++ ....|+|+|||.|.=+..|++.+ ..++++.+|+ .+.++.+ + .++.+.+ +++|+.++
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34555443 45689999999998777666665 3467899997 4454433 2 2356665 78888652
Q ss_pred ---CC-----C-CCEE-EeccccccCChHHHHHHHHHHHH-hCCCCcEEEE
Q 017777 257 ---VP-----K-GDAI-FIKWICHDWSDEHCVKFLKNCYE-ALPVNGKVIV 296 (366)
Q Consensus 257 ---~~-----~-~D~i-~~~~~lh~~~~~~~~~~L~~~~~-~L~pgG~lli 296 (366)
.+ . ..++ ++-+++.+++++++..+|+++++ .|+||+.|+|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 11 1 2555 44579999999999999999999 9999999888
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.8e-05 Score=73.34 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=68.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCC---C---C-CCCEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS---V---P-KGDAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~---~-~~D~i~ 264 (366)
+..+|||+|||+|.++...+.. +..+++.+|+ +.+++.++++ .+++++.+|+++. . . ..|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876643 3448999997 7777766542 2688999998862 1 2 249999
Q ss_pred eccccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.--...-+. .....+++.+.+.|+|||.|+.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8633211111 123456677889999999999865
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3e-05 Score=66.38 Aligned_cols=141 Identities=21% Similarity=0.197 Sum_probs=92.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCc--eEEEccCCC-CCCCC--CEEEeccccccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGV--EHVGGDMFV-SVPKG--DAIFIKWICHDW 272 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v--~~~~~D~~~-~~~~~--D~i~~~~~lh~~ 272 (366)
.+..++|||||.|.....+....-+ +.+..|. -.|++.++.. +.+ ....+|-.. ++.+. |+|+.+..+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve-kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE-KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh-heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 4568999999999999999886522 5778886 7777777654 443 445666544 66655 999999999986
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccC------CHHHHHHHHHHcCCc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKER------TEQEFRALAKAAGFQ 346 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------t~~e~~~ll~~aGf~ 346 (366)
++ ...-+.+++.+|||+|.++-.=. ..+. ....-+...+.-+-. .+|... ...++-.+|..|||.
T Consensus 151 Nd--LPg~m~~ck~~lKPDg~Fiasml-ggdT-----LyELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 ND--LPGSMIQCKLALKPDGLFIASML-GGDT-----LYELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred cc--CchHHHHHHHhcCCCccchhHHh-cccc-----HHHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 54 45778999999999998765322 1111 011112222222211 233222 346788999999998
Q ss_pred eeEEE
Q 017777 347 GFQVV 351 (366)
Q Consensus 347 ~~~~~ 351 (366)
...+.
T Consensus 222 m~tvD 226 (325)
T KOG2940|consen 222 MLTVD 226 (325)
T ss_pred cceec
Confidence 76553
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.2e-05 Score=79.60 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=70.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCC---CC-CCCEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS---VP-KGDAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~~-~~D~i~~~~ 267 (366)
++.+|||+|||+|.++..++.. ...+++.+|+ +.+++.++++ .+++++.+|+++. .+ ..|+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4689999999999999999985 3336999998 7777776642 3789999998762 22 349999842
Q ss_pred ccc--------cC-ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 268 ICH--------DW-SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 268 ~lh--------~~-~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
--. .+ .......+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 110 00 0123457889999999999988775
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=57.67 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=69.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccH-HHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC---C-CCEEE
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGA-TLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP---K-GDAIF 264 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~---~-~D~i~ 264 (366)
.+.+.++ -.+..+|||||||.|. ++..|.+ .+.+++++|+ +..++.+++ ..++++..|++++-+ . .|+|.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 4555555 3345789999999996 7777775 4679999998 777777754 368999999998543 2 39988
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
... |.++...-+-++.+.+ |.-++|.....
T Consensus 83 sir-----pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 754 3456666666677654 46666655433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-05 Score=76.89 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh----CC--CCCCceEEEccCCC---CCCCC--CEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD----AP--AFPGVEHVGGDMFV---SVPKG--DAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~--~~~~v~~~~~D~~~---~~~~~--D~i~~~~~ 268 (366)
....+||||||.|.++..++..+|+..++++|. ...+.. +. ...++.+++.|+.. .++.+ |.|++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999996 332222 11 13678888887632 35544 66665322
Q ss_pred cccCChH-------HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 269 CHDWSDE-------HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 269 lh~~~~~-------~~~~~L~~~~~~L~pgG~lli~e 298 (366)
= -|+.. -...+|+.+.+.|+|||.|.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 1 22211 12489999999999999998864
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.7e-05 Score=75.83 Aligned_cols=98 Identities=18% Similarity=0.290 Sum_probs=67.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEe---cc-hhHHhhCCCCCCceEEEccC---CCCCCCC--CEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINF---DL-PHVIQDAPAFPGVEHVGGDM---FVSVPKG--DAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~D~---~~~~~~~--D~i~~~~~lh~ 271 (366)
....+||||||+|.++..|+++ ++..+.+ |. +..++.|.+. +|..+-+-+ .-|+|.. |+|.|+.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 4578899999999999999985 3333222 22 2333333322 233222222 1278865 99999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|...+ ..+|-++.|+|+|||++++..+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 87665 3689999999999999999776444
|
; GO: 0008168 methyltransferase activity |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.2e-05 Score=71.79 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=66.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCCC-CCC-CC-CEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMFV-SVP-KG-DAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~-~~-D~i~~~~~lh 270 (366)
+...|||||||+|.++...+++. -.+++++|..++.+.+.+ .+.|+++.+.+.+ ..| +. |+|++-+.=|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999888776 458899997666655543 1458899998887 666 44 9998855443
Q ss_pred cCChH-HHHHHHHHHHHhCCCCcEEE
Q 017777 271 DWSDE-HCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 271 ~~~~~-~~~~~L~~~~~~L~pgG~ll 295 (366)
.+--+ =...+|-.=-++|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 32212 12244555567899999865
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.9e-05 Score=63.58 Aligned_cols=86 Identities=22% Similarity=0.141 Sum_probs=59.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCCCEEEeccccccCCh
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKGDAIFIKWICHDWSD 274 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~ 274 (366)
...+|+|+|||||.++...+-..+. +++++|+ |++++.++++ .++.|++.|+.+.....|.++++--+--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 4578999999999999987776554 8889988 8888877754 5799999998764444477777655433211
Q ss_pred HHHHHHHHHHHHh
Q 017777 275 EHCVKFLKNCYEA 287 (366)
Q Consensus 275 ~~~~~~L~~~~~~ 287 (366)
..-..+|.+..+.
T Consensus 124 haDr~Fl~~Ale~ 136 (198)
T COG2263 124 HADRPFLLKALEI 136 (198)
T ss_pred cCCHHHHHHHHHh
Confidence 1113455555544
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00022 Score=61.07 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=80.2
Q ss_pred hhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecchhHHhhCCCCCCceEEEccCCCC-C--
Q 017777 182 SSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS-V-- 257 (366)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~-- 257 (366)
.+.+.+-+.++.+.+.-+.+..+|+|+|+..|.++..+.+... +.+++++|+.++- ..++|.++++|+..+ .
T Consensus 26 RSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 26 RSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred cchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccCccHHH
Confidence 3444445667888876567889999999999999998888764 4468999985552 246799999999873 1
Q ss_pred ------CC-C-CEEEecccc---ccCC------hHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 258 ------PK-G-DAIFIKWIC---HDWS------DEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 258 ------~~-~-D~i~~~~~l---h~~~------~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+. . |+|++-..- -++. -.-+..++.-+...|+|||.+++-.+-
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 2 888752221 1111 122456778888899999999997653
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.2e-05 Score=69.61 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=50.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CC-CCCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VP-KGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~-~~D~i~~~ 266 (366)
.+.+|||+|||+|.++..++. +..+++++|. +.+++.+++. .+++++++|+.+ . .. ..|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 357999999999999999998 4468999998 8888776542 579999999865 2 11 23998876
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00094 Score=59.98 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=88.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecch------hHHhhCC---C-----------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLP------HVIQDAP---A----------------------------- 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~------~~~~~a~---~----------------------------- 242 (366)
...+||-=|||.|+++..++...-.+.+.-++.- -++.... .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 4689999999999999999997433333322210 1111100 0
Q ss_pred -------CCCceEEEccCCC--CCC---CC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch
Q 017777 243 -------FPGVEHVGGDMFV--SVP---KG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL 309 (366)
Q Consensus 243 -------~~~v~~~~~D~~~--~~~---~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~ 309 (366)
..++....||+.+ +.+ .. |+|+.++.+. +.+...+.|+.|.++|||||..|=.-+..-...
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~---- 209 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLLYHFE---- 209 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCccccCC----
Confidence 0257788899887 222 12 9999887775 356688999999999999996655544432210
Q ss_pred hhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 310 ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
+.. .......+.+.+|+.++.++.||+++....
T Consensus 210 --------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 --------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 000124677999999999999999876544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=70.07 Aligned_cols=99 Identities=21% Similarity=0.318 Sum_probs=72.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCC---CCCC--CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV---SVPK--GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~--~D~i 263 (366)
+++.+||-||+|.|..+..+++..+-.+++.+|+ |.+++.++++ +|++++.+|... ...+ .|+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999987655667888888 8888877652 689999999765 3334 4999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.-..--..+... ...+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8732211111111 2478999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.1e-05 Score=64.29 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=66.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC--CCCeEEEecc-hhHHhhCCCC----------------CCceEEEccCCCCCC-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY--PSIKGINFDL-PHVIQDAPAF----------------PGVEHVGGDMFVSVP- 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~D~~~~~~- 258 (366)
+.+..+.||||.|+|.++..++... ++...+++|. |+.++.++++ .++.++.+|-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4567899999999999998877443 3444488886 8888776542 468889999887332
Q ss_pred --CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 --KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.+|.|.+-- .+.++.+++-+-|+|||+|+|-
T Consensus 160 ~a~YDaIhvGA--------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGA--------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCcceEEEcc--------CccccHHHHHHhhccCCeEEEe
Confidence 349998752 2236677888899999999983
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00051 Score=59.26 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=89.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC---CCCCC--CEEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV---SVPKG--DAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~~~~--D~i~ 264 (366)
.++..+|||.-.|-|..++..+++.. ..++.++- |.+++.++-+ .+++++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999888643 25655554 8888877654 358999999876 45543 8875
Q ss_pred eccccccCC------hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 265 IKWICHDWS------DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 265 ~~~~lh~~~------~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
|+-| .--...+-++++++|+|||+++-..-..... . .|+. -.....+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------y------------rG~d-~~~gVa~ 263 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------Y------------RGLD-LPKGVAE 263 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------c------------ccCC-hhHHHHH
Confidence 3322 1124578999999999999998654321110 1 1111 2456788
Q ss_pred HHHHcCCceeEEEECCC
Q 017777 339 LAKAAGFQGFQVVSSAF 355 (366)
Q Consensus 339 ll~~aGf~~~~~~~~~~ 355 (366)
.|+++||.+++......
T Consensus 264 RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 264 RLRRVGFEVVKKVREAL 280 (287)
T ss_pred HHHhcCceeeeeehhcc
Confidence 99999999888766543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00038 Score=60.24 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=86.0
Q ss_pred EEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCC---CCEEEeccccccCC
Q 017777 205 VVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPK---GDAIFIKWICHDWS 273 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~---~D~i~~~~~lh~~~ 273 (366)
|.||||-.|.+...|++...--+++..|+ +..++.|++ .+++++..+|-++..+. .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999887778999997 666665543 26899999998885543 378887654 4
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 274 DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
-.-..++|.+....++...++++.-. .....++++|.+.||.++.-.-+
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 45677888888877766666666321 12567899999999998764333
Q ss_pred ---CCceeEEEEEec
Q 017777 354 ---AFNTYIMEFLKS 365 (366)
Q Consensus 354 ---~~~~~vie~~k~ 365 (366)
+-.+-||.+.+.
T Consensus 126 ~e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 126 EENGRFYEIIVAERG 140 (205)
T ss_dssp EETTEEEEEEEEEES
T ss_pred eECCEEEEEEEEEeC
Confidence 345566666553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00034 Score=62.28 Aligned_cols=93 Identities=18% Similarity=0.341 Sum_probs=64.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc--hhHHh-hCCCCCCceEEEccCCC-CCCC--CCE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL--PHVIQ-DAPAFPGVEHVGGDMFV-SVPK--GDA 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~-~a~~~~~v~~~~~D~~~-~~~~--~D~ 262 (366)
...+++... ..+...|||||+|.|.++..|+++...+.++-+|. .+.+. .....++++++.+|+.+ +++. .-.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 556777666 56688999999999999999999988777777772 22222 22235889999999998 7774 323
Q ss_pred EEeccccccCChHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLK 282 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~ 282 (366)
.+..|.-|+.+.+-..++|+
T Consensus 98 ~vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 98 KVVANLPYNISSPILFKLLE 117 (259)
T ss_pred EEEEcCCCcccHHHHHHHHh
Confidence 34456667766654334433
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00025 Score=69.06 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=65.9
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC-----CC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS-----VP 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-----~~ 258 (366)
.+...+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+. ..
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444443 4566899999999999999998864 37899997 8888777642 5799999998641 11
Q ss_pred -C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 259 -K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 259 -~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
. .|+|++.--=-.+ ...+++.+.+ ++|++.+++
T Consensus 360 ~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 2 3888863221110 1355665554 788876666
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=61.10 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=59.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C--C-C-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V--P-K-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~--~-~-~D~i~~ 265 (366)
...+|||++||+|.++..++.+... +++.+|. +.+++.++++ .+++++.+|+++ . . . . .|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3578999999999999999998654 7888887 6666555432 468899999855 1 1 1 2 266666
Q ss_pred ccccccCChHHHHHHHHHHH--HhCCCCcEEEEEcc
Q 017777 266 KWICHDWSDEHCVKFLKNCY--EALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~--~~L~pgG~lli~e~ 299 (366)
---+.. .....++..+. .+|+++|.++ +|.
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv-~E~ 159 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIV-VEE 159 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEE-EEe
Confidence 433322 11223444443 3577777554 444
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.8e-05 Score=62.44 Aligned_cols=100 Identities=15% Similarity=0.251 Sum_probs=65.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------------CCCceEEEccCCCCCCCC-CEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------------FPGVEHVGGDMFVSVPKG-DAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~~~~-D~i~~ 265 (366)
....+.|||||-|.++..|...+|+.-+.|.++ ..+.+..++ ..++.+...+.+.-.|.. .--.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346689999999999999999999999999886 445443321 245666666655433321 11112
Q ss_pred ccccccCChHH-----------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 KWICHDWSDEH-----------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ~~~lh~~~~~~-----------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+-.++.+||+. ...++.+..-+|++||.++.+.-+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 22222333332 246788888999999999987654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=61.75 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=65.4
Q ss_pred hHHHHHHhccCCC--CCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCCC--------
Q 017777 188 TMKKILENYKGFE--GLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS-------- 256 (366)
Q Consensus 188 ~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-------- 256 (366)
-+.++.+.++-++ +..++||+||++|.++..++++. +..+++++|+.... ....+.++.+|+.++
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~ 83 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRK 83 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGG
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhh
Confidence 3556777776333 45899999999999999999987 66789999984441 113445555555431
Q ss_pred -CC---CC-CEEEeccccccCC---------hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 -VP---KG-DAIFIKWICHDWS---------DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 -~~---~~-D~i~~~~~lh~~~---------~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+ .. |+|++-.....-. .+-+...|.-+...|+|||.+++--.
T Consensus 84 ~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 84 LLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11 23 8888755222111 11233455566677899999888544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0073 Score=55.82 Aligned_cols=92 Identities=16% Similarity=0.101 Sum_probs=68.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCC--CC-CEEEeccccccCChHH
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVP--KG-DAIFIKWICHDWSDEH 276 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~--~~-D~i~~~~~lh~~~~~~ 276 (366)
..+.++|||||++|.++..++++ +.+++.+|...+.......++|.+...|.+...| .. |.+++-.+-+ +
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P- 282 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P- 282 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H-
Confidence 46789999999999999999996 4599999986666666667999999999887333 23 9998876643 2
Q ss_pred HHHHHHHHHHhCCCC-cEEEEEcc
Q 017777 277 CVKFLKNCYEALPVN-GKVIVAES 299 (366)
Q Consensus 277 ~~~~L~~~~~~L~pg-G~lli~e~ 299 (366)
..+++-+.++|..| -+-.|...
T Consensus 283 -~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 283 -ARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred -HHHHHHHHHHHhcCcccEEEEEE
Confidence 35677788888776 23444443
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00028 Score=62.20 Aligned_cols=75 Identities=17% Similarity=0.374 Sum_probs=55.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhC----CCC---CCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA----PAF---PGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a----~~~---~~v~~~~~D~~~-~~~~~ 260 (366)
..+++..-+ ......||+||.|||.++..|++.-..+-.+-.| |.++... +.. ..++++.+|++. +.|..
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 556777776 7888999999999999999999976544444445 5554433 322 579999999998 77877
Q ss_pred CEEEe
Q 017777 261 DAIFI 265 (366)
Q Consensus 261 D~i~~ 265 (366)
|.++.
T Consensus 125 d~cVs 129 (315)
T KOG0820|consen 125 DGCVS 129 (315)
T ss_pred ceeec
Confidence 77765
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00041 Score=66.11 Aligned_cols=90 Identities=7% Similarity=-0.044 Sum_probs=61.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC---C-CCCCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS---V-PKGDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~-~~~D~i~~~~~l 269 (366)
...+|||+|||+|.++..++.. ..+++++|. +.+++.++++ ++++++.+|+.+. . ...|+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3478999999999999999864 468999997 7777766542 4789999998651 1 224988875332
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
-.+ ...+++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 111 124455554 36888777664
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=54.78 Aligned_cols=139 Identities=19% Similarity=0.167 Sum_probs=84.6
Q ss_pred CCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHh-----------hCCC--CCCceEEEccCCC-CCCCC-C
Q 017777 198 GFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQ-----------DAPA--FPGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 198 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~-----------~a~~--~~~v~~~~~D~~~-~~~~~-D 261 (366)
+++...+|+|+=.|.|.++.-+.... |.-.++.+--.+... .+++ +.+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37788999999999999998776654 333333332111111 1111 1455555555544 43444 7
Q ss_pred EEEeccccccC-----ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 262 AIFIKWICHDW-----SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 262 ~i~~~~~lh~~-----~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
+++....-|.+ ....+.++-+.++++|||||.+++.|............. + .++ ....-.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~-------------~-~~r-i~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI-------------T-LHR-IDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhh-------------h-hcc-cChHHH
Confidence 77775444433 234566889999999999999999998765432221100 0 111 345667
Q ss_pred HHHHHHcCCceeEEE
Q 017777 337 RALAKAAGFQGFQVV 351 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~ 351 (366)
.+..+++||+...-.
T Consensus 190 ~a~veaaGFkl~aeS 204 (238)
T COG4798 190 IAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHhhcceeeeee
Confidence 788899999976443
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0019 Score=56.08 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=83.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hh---HHhhCCC---CCCceEEEccCCC--CCCC-CCEEEecccccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PH---VIQDAPA---FPGVEHVGGDMFV--SVPK-GDAIFIKWICHD 271 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~~v~~~~~D~~~--~~~~-~D~i~~~~~lh~ 271 (366)
..+++|||.|.|.-+.-++-.+|+.+++.+|. .. .++.+.. .++++++++-+.+ +.+. +|+|++.-+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998899999999994 22 2333322 3679999888766 2234 79998875532
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
...++.-+...+++||.++..-... ++. -..+.+......|+.+..+.
T Consensus 147 -----L~~l~e~~~pllk~~g~~~~~k~~~--------------------------~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 147 -----LNVLLELCLPLLKVGGGFLAYKGLA--------------------------GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred -----hHHHHHHHHHhcccCCcchhhhHHh--------------------------hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 2466778888999999886532211 000 13455666777788888776
Q ss_pred EC
Q 017777 352 SS 353 (366)
Q Consensus 352 ~~ 353 (366)
..
T Consensus 195 ~~ 196 (215)
T COG0357 195 SL 196 (215)
T ss_pred Ee
Confidence 65
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0046 Score=55.79 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=88.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc------hhHHhhCCC--------------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL------PHVIQDAPA-------------------------------- 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~~-------------------------------- 242 (366)
...+||-=|||.|+++..|+...+.+.+--+.. .-++...+.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 467899999999999999998877766532220 111111100
Q ss_pred -------CCCceEEEccCCC--CCCC----CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch
Q 017777 243 -------FPGVEHVGGDMFV--SVPK----GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL 309 (366)
Q Consensus 243 -------~~~v~~~~~D~~~--~~~~----~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~ 309 (366)
......-.||+.+ +.+. .|+|+.++.+. +.....+.|+.|+..|+|||..+=.-+..-.-.....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 0123445588877 3333 29998886664 3456779999999999999998876654322110000
Q ss_pred hhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 310 ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
. . ...+.+.+.+++..+.+.-||++++-..+
T Consensus 308 ------~-~------~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 308 ------V-E------NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred ------C-c------ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 0 0 01255678999999999999998765443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00045 Score=63.11 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=54.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC----CCceEEEccCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV 255 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~ 255 (366)
+.++++.+. ..+...+||.+||.|..+..+++.+| +.+++++|. |.+++.+++. .+++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 556777776 55667999999999999999999986 789999998 8888877642 478888888765
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00014 Score=61.77 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=66.4
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH---HhhCCC---CCCceEEEccCCC-CCCC-CCEEEeccccccCCh
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV---IQDAPA---FPGVEHVGGDMFV-SVPK-GDAIFIKWICHDWSD 274 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~~~~ 274 (366)
+++|||+|.|.-+.-++-.+|+.+++.+|. ..- ++.+.. .++++++++.+.+ ..+. .|+|++.-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999995 222 222221 3689999988876 3333 39999876642
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
...++.-+...++|||+++..-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 3477888999999999999864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00013 Score=61.69 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=78.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC-CCCEEEeccccccCChHHHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP-KGDAIFIKWICHDWSDEHCV 278 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~-~~D~i~~~~~lh~~~~~~~~ 278 (366)
.+.++||+|+|.|..+..+...+.. +..-++ ..|+.+.++ .+.+++...-+.... +.|+|.|.++|....++ -
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~ 186 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--F 186 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--H
Confidence 4689999999999999988765543 222233 444444432 233332221111111 23999999999554443 4
Q ss_pred HHHHHHHHhCCC-CcEEEEEcccc-----CCCCCCchhhhhhhhcchhhHhhCCCCccC--CHHHHHHHHHHcCCceeEE
Q 017777 279 KFLKNCYEALPV-NGKVIVAESIL-----PVTPDTSLASKVVIHVDCIMLAHNPGGKER--TEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 279 ~~L~~~~~~L~p-gG~lli~e~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~~ 350 (366)
++|+.+..+|+| .|++++.=... .-+..+.+.. ....++ -+|+.+ ....+.++|+++||++...
T Consensus 187 kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~r-Pdn~Le-------~~Gr~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLR-PDNLLE-------NNGRSFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCC-chHHHH-------hcCccHHHHHHHHHHHHHhcCchhhhh
Confidence 899999999999 78877742211 1011111100 001111 134433 2345678999999998765
Q ss_pred EEC
Q 017777 351 VSS 353 (366)
Q Consensus 351 ~~~ 353 (366)
...
T Consensus 259 Trl 261 (288)
T KOG3987|consen 259 TRL 261 (288)
T ss_pred hcC
Confidence 554
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00032 Score=63.93 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=68.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCe-EEEecchhH----HhhCCCC---CCceEEEccCCC---CCCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIK-GINFDLPHV----IQDAPAF---PGVEHVGGDMFV---SVPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~----~~~a~~~---~~v~~~~~D~~~---~~~~ 259 (366)
.+....+++. +.+|||||.|.|.-+-++-..+|+++ ++++..... +....++ ........|+.. ++|.
T Consensus 104 ~L~~~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 104 ELQKRVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHhCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 3333334333 46799999999999988888899885 455554222 2222211 122222333332 5666
Q ss_pred CCEEEeccccccCC----hHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 260 GDAIFIKWICHDWS----DEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 260 ~D~i~~~~~lh~~~----~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.|.|.+..++|.+- ..+....++.+-..+.|||.|+|+|.-.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 67776666665442 2234458999999999999999999743
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0061 Score=55.00 Aligned_cols=148 Identities=12% Similarity=0.075 Sum_probs=94.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------CCCceEEEccCCCC---------C-CCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------FPGVEHVGGDMFVS---------V-PKG 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~---------~-~~~ 260 (366)
.+...|+.+|||--....++... ++++++-+|.|++++.-++ ..+.+++..|+... + +..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999998888877432 3688899999988764322 25788899998631 1 111
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh-HhhCCCCccCCHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM-LAHNPGGKERTEQEFRA 338 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ 338 (366)
-++++-.++++++.++..++|+.+.+...||+.|++ |.+.+-..... ............ ....+--...+.+++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWR-AGMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHH-HHHHHHHHHhhhcccccccccCCChhhHHH
Confidence 577788999999999999999999999888887775 44333111000 000000000000 00000011246899999
Q ss_pred HHHHcCCceeEE
Q 017777 339 LAKAAGFQGFQV 350 (366)
Q Consensus 339 ll~~aGf~~~~~ 350 (366)
+|.+.||+....
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999998665
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0028 Score=52.89 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=68.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEc-cCCCC---------CCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGG-DMFVS---------VPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-D~~~~---------~~~ 259 (366)
++-++|.-+.+..+|||+||..|.++.-..++. |+-.+.++|+.+.. .-.++.++++ |+.+| .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 455666656778999999999999999988887 99899999974432 1245666666 66553 232
Q ss_pred C--CEEEeccccccC----------ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 G--DAIFIKWICHDW----------SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~--D~i~~~~~lh~~----------~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. |+|++-+. ++- .-+-|..+|.-....++|+|.+++--.
T Consensus 135 r~VdvVlSDMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 135 RPVDVVLSDMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred CcccEEEeccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 2 77765332 221 112244455555666789999888543
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=62.47 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=67.4
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC--C-CCCCCEEEecccccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV--S-VPKGDAIFIKWICHD 271 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~-~~~~D~i~~~~~lh~ 271 (366)
..+|||++||+|..+..++...+..+++++|+ +..++.++++ .++++..+|... . .+..|+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998877567899998 7777766542 456688888755 2 22349998843 1
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
... ..+|..+.+.++|||.+.+.
T Consensus 135 -Gs~--~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcCCCEEEEE
Confidence 222 36788877788999999997
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0027 Score=55.29 Aligned_cols=97 Identities=18% Similarity=0.442 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC----CeEEEecc-hhHHhh-----CCCCCCc--eEEEccCCC---CCCCC--C-E
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS----IKGINFDL-PHVIQD-----APAFPGV--EHVGGDMFV---SVPKG--D-A 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~-----a~~~~~v--~~~~~D~~~---~~~~~--D-~ 262 (366)
+...++|+|.|+..=+..|+..+.. ++.+-+|+ ..+++. .++++.+ .-+++|+.. ..|.+ . .
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4688999999999888887777755 67888887 333322 2335554 456788765 23433 3 4
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+++-..|-+++++++..+|..++.+|+||-++++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 46678999999999999999999999999988883
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00035 Score=56.71 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=66.2
Q ss_pred CCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------CCCceEEEccCCCC--C-CC--CCEEEe
Q 017777 202 LNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------FPGVEHVGGDMFVS--V-PK--GDAIFI 265 (366)
Q Consensus 202 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~--~-~~--~D~i~~ 265 (366)
..+||++|+| +|..+..++...|...+..-|- .+.++..++ ..++.++..+.... + .+ .|+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4789999999 5666666666677777877784 444443332 14455555555442 1 12 399999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..++.. ++....+.+.|+..|+|.|+-++..+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 988865 56677899999999999999777544
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0067 Score=49.26 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=62.4
Q ss_pred EEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC---CC---ceEEEccCCC---CCCC--C-CEEEeccccc
Q 017777 205 VVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF---PG---VEHVGGDMFV---SVPK--G-DAIFIKWICH 270 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~~---v~~~~~D~~~---~~~~--~-D~i~~~~~lh 270 (366)
++|+|||+|... .+....+. ..++++|. +.++...+.. .. +.+...|... ++.. . |++.....+|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 33333333 36777886 5555443221 11 5777777653 4443 3 8884444444
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
+.. ....++.+.+.++|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 468899999999999999998876543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.049 Score=46.31 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=96.2
Q ss_pred ccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-----hhHHhhCCCCCCceEEEccCCCCCC-----CC-CEEE
Q 017777 196 YKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-----PHVIQDAPAFPGVEHVGGDMFVSVP-----KG-DAIF 264 (366)
Q Consensus 196 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~~-----~~-D~i~ 264 (366)
++ ++++.+||=+|..+|.....+..-.++-.+.++.. .+.+..+++.+++--+-+|...|.. +. |+|+
T Consensus 72 ~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 72 FP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEE
Confidence 44 67899999999999999999998888666677764 3445667777899889999877643 23 8876
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
.- +- -+.++.-+..++..-||+||++++.=-...-+.+.++.. . + .+|. +-|++.|
T Consensus 151 ~D-VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~----v--------f-------~~ev-~kL~~~~ 206 (231)
T COG1889 151 QD-VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE----V--------F-------KDEV-EKLEEGG 206 (231)
T ss_pred Ee-cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH----H--------H-------HHHH-HHHHhcC
Confidence 52 21 134566788899999999998777544333222111100 0 0 2233 4567889
Q ss_pred CceeEEEECC---CceeEEEEEe
Q 017777 345 FQGFQVVSSA---FNTYIMEFLK 364 (366)
Q Consensus 345 f~~~~~~~~~---~~~~vie~~k 364 (366)
|++.++..+. ..+.++.+.+
T Consensus 207 f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred ceeeEEeccCCcccceEEEEEee
Confidence 9999888774 3445555443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.03 Score=48.26 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=84.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC----CCC---CCceEEEccCCCCCC-C-C-CEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA----PAF---PGVEHVGGDMFVSVP-K-G-DAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~---~~v~~~~~D~~~~~~-~-~-D~i~~~~~l 269 (366)
...++.||||-.|.+...|++.++...++..|. +..++.+ +++ ++++...+|.+.++. + . |+++...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 344599999999999999999999989998886 4333333 322 789999999987543 3 2 88876543
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
.-.-...+|..-.+-|+.--++++. |+. ...++++||.+.+|.++.
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlILQ----------------------------Pn~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLILQ----------------------------PNI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEEC----------------------------CCC---CHHHHHHHHHhCCceeee
Confidence 4456678888888877644455552 111 246788899999999875
Q ss_pred EEECC
Q 017777 350 VVSSA 354 (366)
Q Consensus 350 ~~~~~ 354 (366)
-.-+.
T Consensus 141 E~ile 145 (226)
T COG2384 141 ETILE 145 (226)
T ss_pred eeeec
Confidence 44443
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0034 Score=53.35 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=67.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCe---------EEEecc-hhHHhhCCCC-------CCceEEEccC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIK---------GINFDL-PHVIQDAPAF-------PGVEHVGGDM 253 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~~v~~~~~D~ 253 (366)
.++.... +.+...|+|-=||+|.+..+.+...+++. +++.|+ +.+++.++++ ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444333 77788999999999999999887777766 889997 7777666542 4588999999
Q ss_pred CC-CCCC-C-CEEEecccccc-CChH-H----HHHHHHHHHHhCCCCcEEEE
Q 017777 254 FV-SVPK-G-DAIFIKWICHD-WSDE-H----CVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 254 ~~-~~~~-~-D~i~~~~~lh~-~~~~-~----~~~~L~~~~~~L~pgG~lli 296 (366)
.+ +.+. . |+|++.--.-. .+.. + ...+++.++++|+|...+++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 87 6433 3 99998654432 1221 1 24678999999998444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0016 Score=58.12 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=65.1
Q ss_pred EEEccCCC--CC------CC-CCEEEeccccccC--ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 248 HVGGDMFV--SV------PK-GDAIFIKWICHDW--SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 248 ~~~~D~~~--~~------~~-~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
++..|+.+ |. |+ .|++++..+|... +.++-...++++.++|||||.|++........ +.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 66788887 22 23 4999999998654 34567899999999999999999988754321 00
Q ss_pred cchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC-----CceeEEEEEe
Q 017777 317 VDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA-----FNTYIMEFLK 364 (366)
Q Consensus 317 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-----~~~~vie~~k 364 (366)
..-.. ......+.+.+++.|+++||.+.+..... .++-.+.++|
T Consensus 208 vG~~~----F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 208 VGGHK----FPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ETTEE----EE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ECCEe----cccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 00000 01123478999999999999988876411 3444555554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0032 Score=56.95 Aligned_cols=96 Identities=18% Similarity=0.321 Sum_probs=63.6
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC----CCCCCceEEEccCCC-CCCC--
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA----PAFPGVEHVGGDMFV-SVPK-- 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~-~~~~-- 259 (366)
....+++.+. ..+...|||||+|.|.++..|++.. .++++++. +..++.. ...++++++.+|+++ +.+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 3556777776 6678999999999999999999988 45666654 4444333 335899999999998 5444
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCC
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPV 290 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 290 (366)
..+.+..+.-++.+. .++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is~----~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISS----PILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGHH----HHHHHHHHHGGG
T ss_pred cCCceEEEEEecccchH----HHHHHHhhcccc
Confidence 344455555555443 456666554344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.005 Score=56.67 Aligned_cols=94 Identities=30% Similarity=0.467 Sum_probs=70.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC-------------CCceEEEccCCCC-C--CCC-
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF-------------PGVEHVGGDMFVS-V--PKG- 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~~-~--~~~- 260 (366)
++..++|-+|||.|..+.++++ +|+. +++.+|+ |.|++.++.. +|++++..|.++- . .+.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999998876 6865 5778888 9999988731 7899999998872 1 222
Q ss_pred CEEEeccccccCChHH--------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 DAIFIKWICHDWSDEH--------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~--------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|+++. +++|+. ..++-.-+++.|+++|.+++.-.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 77765 223221 24677888899999999998653
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.001 Score=53.03 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=49.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCC---CEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKG---DAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~---D~i~~~~~l 269 (366)
.+.+++|+|||.|.++.+... +..-.++|+|+ |+.++.+.++ -++.+++.|+.++.+.+ |..+.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 368899999999999944333 23335799999 9999888765 36788999998854432 777776554
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00031 Score=46.53 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=39.1
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+.|++.|.+.+ ++.|+.|||+++|+ +..-+.|+|..|+..||+++
T Consensus 6 l~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 45778888764 57899999999999 99999999999999999996
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.021 Score=50.69 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=76.2
Q ss_pred HHHHhhhcchh----hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-----hhHHhhCCCC---
Q 017777 177 FNNGMSSHSTI----TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-----PHVIQDAPAF--- 243 (366)
Q Consensus 177 ~~~~m~~~~~~----~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~--- 243 (366)
|...|...+.. ....++..+. .....+|++-|.|+|.++..+++.. |.-+++.+|. ..+.+..+++
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~ 156 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG 156 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC
Confidence 33445444432 2345666666 7888999999999999999999886 6667888885 3344444443
Q ss_pred CCceEEEccCCC-CCC--C--CCEEEeccccccCChHHHHHHHHHHHHhCCCCc-EEEEEccc
Q 017777 244 PGVEHVGGDMFV-SVP--K--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNG-KVIVAESI 300 (366)
Q Consensus 244 ~~v~~~~~D~~~-~~~--~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG-~lli~e~~ 300 (366)
+++++...|+-. -+. + +|+|++ ++|.+. ..+--+.++||.+| +++...++
T Consensus 157 ~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 157 DNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHH
Confidence 678898888876 343 2 288887 344443 33555555777665 66665544
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.048 Score=51.68 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCccHHHHHHH--------Hh-------CCCCeEEEecchhH--HhhCCC------------------CCC
Q 017777 201 GLNSVVDVGGGIGATLNMII--------SK-------YPSIKGINFDLPHV--IQDAPA------------------FPG 245 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~~--~~~a~~------------------~~~ 245 (366)
+..+|+|+|||+|..+..+. ++ .|.+.+..-|+|.- -..++. ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46789999999997654432 22 24566766676411 111110 011
Q ss_pred ---ceEEEccCCC-CCCCC--CEEEeccccccCCh--H----------------------------------HHHHHHHH
Q 017777 246 ---VEHVGGDMFV-SVPKG--DAIFIKWICHDWSD--E----------------------------------HCVKFLKN 283 (366)
Q Consensus 246 ---v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~--~----------------------------------~~~~~L~~ 283 (366)
+.-+++.+.. -+|.. +++++++.||+++. + +...+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2234577777 57765 99999999998762 0 12234555
Q ss_pred HHHhCCCCcEEEEEccccC
Q 017777 284 CYEALPVNGKVIVAESILP 302 (366)
Q Consensus 284 ~~~~L~pgG~lli~e~~~~ 302 (366)
=++=|.|||++++.-.-++
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhccCcEEEEEEecCC
Confidence 5567899999999876554
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0049 Score=50.15 Aligned_cols=94 Identities=20% Similarity=0.272 Sum_probs=58.6
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCC-CCCCC-CE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFV-SVPKG-DA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~-D~ 262 (366)
..+..+|+|+|||.|.++..|+.. .++++++++|. +..++.+.+. .++++..+++.. ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999998882 28889999996 5554444321 356666665544 22222 66
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++--|.--.++ ..+|+...+ |+-..++.-+
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEEEcC
Confidence 66544443333 245555544 5655555433
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.01 Score=50.81 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-----CCCceEEEc---cCCCCCCCC--CEEEeccc-
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-----FPGVEHVGG---DMFVSVPKG--DAIFIKWI- 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~---D~~~~~~~~--D~i~~~~~- 268 (366)
.+..+||.||-|-|.....+-++-|..+.++---|.+.+..+. ..+|....+ |.....+++ |-|+.--.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5689999999999999988888877755554434777776654 356776665 444445543 77765322
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
=|+ ++...+-+.+.++|||+|++=......-+
T Consensus 180 e~y---Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY---EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hHH---HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 222 67788999999999999998877665433
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.005 Score=56.52 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=96.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC----CC-----CceEEEccCCC-CCC---------C-C
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA----FP-----GVEHVGGDMFV-SVP---------K-G 260 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~-----~v~~~~~D~~~-~~~---------~-~ 260 (366)
+...|+-+|||--.-+.++-.. +++++..+|.|++++.-++ .. ++++++.|+++ +.+ . .
T Consensus 92 g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred cccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 3689999999977766666442 2578899999999875443 22 78999999995 432 1 1
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-hhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-ASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
-++++-.++.+++.++..++|..|.....||..++.............. ..................-......++..
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 5778889999999999999999999999999888886541111100000 00000000000000000011234789999
Q ss_pred HHHHcCCceeEE
Q 017777 339 LAKAAGFQGFQV 350 (366)
Q Consensus 339 ll~~aGf~~~~~ 350 (366)
++.+.||.....
T Consensus 251 ~l~~~g~~~~~~ 262 (297)
T COG3315 251 WLAERGWRSTLN 262 (297)
T ss_pred HHHhcCEEEEec
Confidence 999999997765
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0021 Score=53.62 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=70.6
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCCCEEEeccccccCCh
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKGDAIFIKWICHDWSD 274 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~D~i~~~~~lh~~~~ 274 (366)
..+.|+|.|+|.++.-.+++ .-+++.+.. |...+.+.++ .+++++.+|..+ ++..+|+|+|-..=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999999876665 336777776 7777666654 579999999988 7866699987543222234
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++.+.+++.+..-||-++.++=.+.
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHH
Confidence 5567889999999999988876554
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0015 Score=61.41 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=75.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCCC--CEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPKG--DAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~--D~i~~~~~l 269 (366)
....++|+|||.|.....+. .+.....+++|. +.-+.+... .....++.+|+.. |+++. |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~-~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIA-VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHH-HhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 34578999999999987554 466778888886 333332222 1445568889888 77764 999999888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
.|.++.. .++++++++++|||+.++.+.+...
T Consensus 189 ~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 189 CHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred ccCCcHH--HHHHHHhcccCCCceEEeHHHHHhh
Confidence 8877664 7799999999999999998886643
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0066 Score=55.19 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCeEEEEeCCccHHHHHHHHhC--------------------CCCeEEEecc---hhHHhhCCC----C-----------
Q 017777 202 LNSVVDVGGGIGATLNMIISKY--------------------PSIKGINFDL---PHVIQDAPA----F----------- 243 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 243 (366)
..+||-||||.|.-..+++..+ +.+.++.+|+ ..+++.... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3799999999998777766665 2357888886 444433211 0
Q ss_pred --------CCceEEEccCCC-CCC---------CCCEEEeccccccC---ChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 244 --------PGVEHVGGDMFV-SVP---------KGDAIFIKWICHDW---SDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 244 --------~~v~~~~~D~~~-~~~---------~~D~i~~~~~lh~~---~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
-++.|.+.|++. ..+ ..++|.+.++++.+ +-.+-.++|.++...++||..|+|+|...
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 247899999987 221 12888887777653 34456799999999999999999999643
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0089 Score=58.42 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCC------CCCceEEEccCCC---CCCCC-CEEEe-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV---SVPKG-DAIFI- 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~-D~i~~- 265 (366)
...+.+|||+++|.|.=+..++....+ -.++..|+ +.-++..++ ..++.+...|... .++.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999988754 46788886 444433322 2567777777653 23333 88874
Q ss_pred ---c--cccc-------cCChHHH-------HHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 ---K--WICH-------DWSDEHC-------VKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ---~--~~lh-------~~~~~~~-------~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+ .++. .|+.++. .++|..+.+.|||||+|+-..-.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 3 2222 3333222 68999999999999999765543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.088 Score=46.04 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=90.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc--hhHHhhCCCCCCceEEEc-cCCC----CCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL--PHVIQDAPAFPGVEHVGG-DMFV----SVPKG- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-D~~~----~~~~~- 260 (366)
+...++.+.-..++..+||||..||.++.-++++-.. .++++|. .+.....+..+|+..+.. |+.. .+.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk-~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAK-HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCc-EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 4556666662236789999999999999999986433 6788884 344444455577666554 4432 12222
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE-ccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA-ESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|++++--.+ .....+|-.+...++|++-++.. -+-....+.... .--...+ +.....-..++.++
T Consensus 146 d~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~--kkGvv~d-------~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG--KKGVVRD-------PKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC--cCceecC-------cchHHHHHHHHHHH
Confidence 777764333 23458899999999999866653 222211110000 0000001 11223346788999
Q ss_pred HHHcCCceeEEEEC
Q 017777 340 AKAAGFQGFQVVSS 353 (366)
Q Consensus 340 l~~aGf~~~~~~~~ 353 (366)
+.+.||.+..+...
T Consensus 212 ~~~~g~~~~gl~~S 225 (245)
T COG1189 212 AKELGFQVKGLIKS 225 (245)
T ss_pred HhhcCcEEeeeEcc
Confidence 99999999877664
|
|
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0018 Score=50.57 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 31 SVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 31 ~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
.-.+.+|.-..++.|+..|.+. ++.++.||++.+++ .++.+.+.|+.|...|+|+.. ..|+ .-.|+++
T Consensus 7 ~~~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~----r~Gr-~~~Y~l~ 74 (117)
T PRK10141 7 LQLFKILSDETRLGIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDR----KQGK-WVHYRLS 74 (117)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE----EEcC-EEEEEEC
Confidence 4567788888999999999864 48999999999999 999999999999999999864 3332 3457776
Q ss_pred h
Q 017777 111 P 111 (366)
Q Consensus 111 ~ 111 (366)
+
T Consensus 75 ~ 75 (117)
T PRK10141 75 P 75 (117)
T ss_pred c
Confidence 4
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.019 Score=49.71 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=88.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-h----hHHhhCCCCCCceEEEccCCCCCC-----CC-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-P----HVIQDAPAFPGVEHVGGDMFVSVP-----KG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~~-----~~-D~i~~~ 266 (366)
+.++.+||-+|.++|.....+..-.. +-.+..++. | +.+..+++.++|--+-.|...|.. +. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 66789999999999999998887764 667777775 3 446667777899989999877532 22 877764
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
-. + + ++..-++.++..-||+||.+++.=-...-+...++.. ...+=.+.|++.||+
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~--------------------vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKPGGHLIISIKARSIDSTADPEE--------------------VFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHH--------------------HHHHHHHHHHCTTCE
T ss_pred CC-C--h-HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHH--------------------HHHHHHHHHHHcCCC
Confidence 22 2 2 4567788999999999999988643211111100000 012223566888999
Q ss_pred eeEEEECC---CceeEEEEE
Q 017777 347 GFQVVSSA---FNTYIMEFL 363 (366)
Q Consensus 347 ~~~~~~~~---~~~~vie~~ 363 (366)
+.+...+. ..+.++.++
T Consensus 207 ~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEEEEE-TTTSTTEEEEEEE
T ss_pred hheEeccCCCCCCcEEEEEE
Confidence 99888874 344444443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0019 Score=44.25 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+.+|.--.++.|+..|... +|.|+.|||+.+++ ++.-+.+.|+.|...|+|+..
T Consensus 3 i~~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 3 IFKALSDPTRLRILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 34566677888999999443 59999999999999 999999999999999999964
|
... |
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0052 Score=43.12 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=47.6
Q ss_pred HHhhChHHHHhhcCCCCC--CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 40 AIELDLLEIIAKAGPDAF--MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~--~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
..+-.|+..|.+.+ + +|+.|||+.+|+ +...+++.|..|...|+|.... .. ...|.++.
T Consensus 6 ~~~~~IL~~L~~~g---~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~---~~---~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSG---DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG---GT---PPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCC---CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC---CC---CCceEeec
Confidence 45567888898864 5 999999999999 9999999999999999999641 10 36777664
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0046 Score=46.02 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=47.6
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
-+.|++.|.+.+ ++.|+.|||+.+++ +..-+.|.|+.|+..|++..+ +. ++.|++++..
T Consensus 7 ~~~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~---~~----~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD---GQ----NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec---CC----CCceeecHHH
Confidence 356788887752 48999999999999 999999999999999999963 11 4678887643
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.011 Score=53.44 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=56.0
Q ss_pred CCCeEEEEeCCccHHH-HHHHHh-CCCCeEEEecc-hhHHhhCCC--------CCCceEEEccCCC-C--CCCCCEEEec
Q 017777 201 GLNSVVDVGGGIGATL-NMIISK-YPSIKGINFDL-PHVIQDAPA--------FPGVEHVGGDMFV-S--VPKGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~-~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~--~~~~D~i~~~ 266 (366)
.+.+|+=||+|.==++ ..+++. .++..++++|+ |+.++.+++ ..++.|+++|..+ + ..+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3579999999965444 445444 36778899997 777766643 2689999999876 2 3345999887
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
-..-. +.++..++|+++.+.|+||..|++-
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 66542 3445579999999999999998885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0021 Score=41.47 Aligned_cols=43 Identities=14% Similarity=0.355 Sum_probs=38.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
++.|...|.+ +|.++.||++.+++ ++..+.+.|+.|...|+++
T Consensus 4 R~~Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5677888888 59999999999999 9999999999999999986
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0049 Score=53.11 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=61.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCC--CCEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPK--GDAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~--~D~i~~~~~ 268 (366)
..++..|+|.-||.|.++..+++..+...++.+|+ |..++..++ ..++....+|..+-.+. .|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 34678999999999999999998777778999998 777765543 26788999998763223 27766643
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEE
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKV 294 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~l 294 (366)
|. ....+|..+.+.+++||.+
T Consensus 178 ----p~-~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 ----PE-SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ----TS-SGGGGHHHHHHHEEEEEEE
T ss_pred ----hH-HHHHHHHHHHHHhcCCcEE
Confidence 21 2246788899999988876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.034 Score=47.03 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=66.8
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCCCEEEe
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKGDAIFI 265 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~ 265 (366)
.+..-++.=..++|||+|.|+|..++..++... ..++..|+ |.....++-+ -.|.+...|..-+-+..|+++.
T Consensus 70 ~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~La 148 (218)
T COG3897 70 YIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLA 148 (218)
T ss_pred HHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEe
Confidence 333344344679999999999999887666432 24555555 4444443322 3467777776653334499999
Q ss_pred ccccccCChHHHHHHHHHHHHhCC-CCcEEEEEccccC
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALP-VNGKVIVAESILP 302 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~-pgG~lli~e~~~~ 302 (366)
..++++.+ ....++. +.+.|+ .|-.+++-++-++
T Consensus 149 gDlfy~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 149 GDLFYNHT--EADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred eceecCch--HHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 99998754 3446677 555554 5556666665443
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0063 Score=49.37 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=40.7
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV 255 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 255 (366)
.++|||||.|.++..+++.+|+.+++.+|. |.+.+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999989999997 6666655432 457777666553
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.011 Score=54.84 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHh-------CCCCeEEEecc-hhHHhhCCC--------CCCceEEEccCCC-C-CC--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISK-------YPSIKGINFDL-PHVIQDAPA--------FPGVEHVGGDMFV-S-VP-- 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~-~~-- 258 (366)
.....+|+|-.||+|.++.++.+. .+...++++|+ +.++..++- .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 455678999999999999988874 37778999997 555544331 1335688889876 2 22
Q ss_pred -CCCEEEecccc--ccCCh-----------------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 -KGDAIFIKWIC--HDWSD-----------------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 -~~D~i~~~~~l--h~~~~-----------------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..|+|+++--+ ..|.+ ..-..++..+.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 23999886333 21111 0112588999999999999877543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.002 Score=49.55 Aligned_cols=90 Identities=23% Similarity=0.253 Sum_probs=38.6
Q ss_pred EEEeCCccHHHHHHHHhCCCC---eEEEecc-h---hHHhhCCC---CCCceEEEccCCCC---CC-CC-CEEEeccccc
Q 017777 206 VDVGGGIGATLNMIISKYPSI---KGINFDL-P---HVIQDAPA---FPGVEHVGGDMFVS---VP-KG-DAIFIKWICH 270 (366)
Q Consensus 206 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~~---~~-~~-D~i~~~~~lh 270 (366)
||||+..|..+..+++..+.. +++.+|. + ...+..++ ..+++++.++..+- .+ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877654 5799997 4 23333332 26799999998652 22 22 8887643 23
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
. .+....-++.+.+.|+|||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 2455678999999999999998865
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.019 Score=57.37 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=44.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC--------CeEEEecc-hhHHhhCCCC----C--CceEEEccCCCC-------C-
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS--------IKGINFDL-PHVIQDAPAF----P--GVEHVGGDMFVS-------V- 257 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--~v~~~~~D~~~~-------~- 257 (366)
...+|||.+||+|.++..++...+. ..++++|+ +..+..++.. . .+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 45688887 6666554321 2 345555554431 1
Q ss_pred CCCCEEEecc
Q 017777 258 PKGDAIFIKW 267 (366)
Q Consensus 258 ~~~D~i~~~~ 267 (366)
+..|+|+.+-
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 1239998863
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0077 Score=56.95 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=41.5
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV 255 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 255 (366)
.+|||++||+|.++..+++... +++++|. +++++.++++ .+++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999998888763 7899997 7787777653 468899988765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0065 Score=46.01 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=50.1
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
..++.|++.|... ++.++.+|++.+++ .++.+.+.|++|...|+|... +.|+ .-.|++++.
T Consensus 12 ptRr~IL~lL~~~---e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~sr----K~Gr-~vyY~Ln~~ 72 (108)
T PHA00738 12 ILRRKILELIAEN---YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELY----KEGR-TLYAKIREN 72 (108)
T ss_pred HHHHHHHHHHHHc---CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEE----EECC-EEEEEECCC
Confidence 4678899999884 37999999999999 999999999999999999974 4443 456777643
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0028 Score=52.56 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=42.8
Q ss_pred eEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---CC--C-CCEEEecc
Q 017777 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---VP--K-GDAIFIKW 267 (366)
Q Consensus 204 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~--~-~D~i~~~~ 267 (366)
.|+|+-||.|..+..+++.+. +++.+|+ |..++.++.+ ++|.++++|+++. .. . .|+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 689999999999999999875 4777776 6666665542 5899999999872 22 2 38888753
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.045 Score=56.63 Aligned_cols=111 Identities=15% Similarity=0.022 Sum_probs=71.3
Q ss_pred hHHHHHHhccCC-CCCCeEEEEeCCccHHHHHHHHhC------------------------------------------C
Q 017777 188 TMKKILENYKGF-EGLNSVVDVGGGIGATLNMIISKY------------------------------------------P 224 (366)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p 224 (366)
.+..++.... | .+...++|-.||+|.++++.+... .
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 4455565444 6 557899999999999998876531 1
Q ss_pred CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC-C---CCEEEeccccc-cCCh-HHHHHHHHHHHHhCC
Q 017777 225 SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP-K---GDAIFIKWICH-DWSD-EHCVKFLKNCYEALP 289 (366)
Q Consensus 225 ~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~---~D~i~~~~~lh-~~~~-~~~~~~L~~~~~~L~ 289 (366)
..+++++|+ +.+++.++++ +++.+..+|+.+ +.+ . .|+|+++--.- .+.+ .+...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899998 8888777653 468899999877 333 1 39998874431 2222 333344444444443
Q ss_pred ---CCcEEEEEcc
Q 017777 290 ---VNGKVIVAES 299 (366)
Q Consensus 290 ---pgG~lli~e~ 299 (366)
||+++.++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888777554
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0066 Score=44.48 Aligned_cols=48 Identities=29% Similarity=0.348 Sum_probs=38.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
++.|.++||+.+++ ++..++++++.|...|+++.. .|+ ++.|.++...
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~-----~G~-~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESS-----RGR-GGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE-----TST-TSEEEESS-C
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEec-----CCC-CCceeecCCH
Confidence 57999999999999 999999999999999999863 232 4778887543
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.095 Score=48.61 Aligned_cols=106 Identities=19% Similarity=0.116 Sum_probs=73.9
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEc-cCCC-CCCCC--
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGG-DMFV-SVPKG-- 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~-D~~~-~~~~~-- 260 (366)
++-++.+..++..|||==||||.++.+..- -+++++|.|+ ..+++-++.+ ....+... |+.. |+++.
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~v 265 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSV 265 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCcc
Confidence 333344456678999999999999988765 6788999998 7777766653 23434444 8777 77764
Q ss_pred CEEEeccc------cccCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 DAIFIKWI------CHDWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 D~i~~~~~------lh~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|.|++-.- ..-.. ++=..++|+.+.++|++||++++.-+
T Consensus 266 daIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 266 DAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 88877321 11111 23356899999999999999998654
|
|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0078 Score=38.93 Aligned_cols=45 Identities=16% Similarity=0.363 Sum_probs=38.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
.+..|+..|.+. ++.|..|||+.+|+ +...+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 456788999986 47999999999999 9999999999999999974
|
... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.027 Score=53.51 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=72.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC--------CCceEEEccCCCC----CC---CCCEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS----VP---KGDAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~----~~---~~D~i 263 (366)
.+.+|||+=|=||.++...+. .+. +++.+|+ ..+++.++++ .++.++++|.|+- .. ..|+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 478999999999999988877 455 8999997 7777777653 5689999999872 12 23999
Q ss_pred Eec-ccc-----ccCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 264 FIK-WIC-----HDWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 264 ~~~-~~l-----h~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++- -.+ .-|+ ..+...++..+.+.|+|||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 872 111 1121 12456889999999999999999765
|
|
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0095 Score=53.30 Aligned_cols=60 Identities=22% Similarity=0.387 Sum_probs=48.9
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
+.|++.|...+ .++++.|||+++|+ +..-+.|+|..|+..||++++ .+ +++|++++..-.
T Consensus 7 l~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d----~~---~g~Y~Lg~~~~~ 66 (246)
T COG1414 7 LAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD----PE---DGRYRLGPRLLE 66 (246)
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc----CC---CCcEeehHHHHH
Confidence 56788888743 34679999999999 999999999999999999975 11 468999986543
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.13 Score=46.66 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=98.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC--CCCeEEEecchhHHhhCC---CC-------------------------CCceE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY--PSIKGINFDLPHVIQDAP---AF-------------------------PGVEH 248 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~---~~-------------------------~~v~~ 248 (366)
.++...|+.+|||.-.+..+|...+ +.+.++-+|.|++++.-- .. ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4577899999999999999999988 778889999877764311 00 34555
Q ss_pred EEccCCC--CC----CC----C---CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhh
Q 017777 249 VGGDMFV--SV----PK----G---DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVI 315 (366)
Q Consensus 249 ~~~D~~~--~~----~~----~---D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 315 (366)
...|..+ .. .. . -+++.-.+|-++++++...+++-+.+.. |.+.+++.|.+.+.++-+.-......
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~vM~~nlk 243 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGKVMLANLK 243 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHHHHHHHHH
Confidence 6666653 11 00 1 3445567888899999889999988877 57788889998876632211000000
Q ss_pred hcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 316 HVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 316 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
..+..+. .-....|.+..++.+.++||+-+.+..
T Consensus 244 ~r~~~L~---gle~y~s~Esq~~Rf~~~Gw~~v~a~D 277 (335)
T KOG2918|consen 244 RRGCPLH---GLETYNSIESQRSRFLKAGWEYVIAVD 277 (335)
T ss_pred hcCCCCc---hhhhcccHHHHHHHHHhcCCceeehhh
Confidence 0000000 001234888899999999999887654
|
|
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0093 Score=53.49 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=48.9
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFL 116 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l 116 (366)
+.|++.|...+ .|+|+.|||+.+|+ +..-+.|+|..|+..|||+++ ++.|++.+....+
T Consensus 12 l~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~~~~l 70 (248)
T TIGR02431 12 LAVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD---------GRLFWLTPRVLRL 70 (248)
T ss_pred HHHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEecHHHHHH
Confidence 56778887643 58999999999999 999999999999999999962 4789998765433
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.063 Score=46.63 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=71.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhh-------CCCCCCceEEEccCCCCC----C---C--CC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQD-------APAFPGVEHVGGDMFVSV----P---K--GD 261 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~-------a~~~~~v~~~~~D~~~~~----~---~--~D 261 (366)
-+++++||||.=+|..+...+.+.|. -+++.+|. +...+. +.-...|+++.++..+.. + . .|
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 35799999999999999999998875 46788886 333333 333478999998876521 1 1 28
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
.+|. .+|.+. ......++-+.+|+||.|++-....+.
T Consensus 152 faFv----DadK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFV----DADKDN-YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEE----ccchHH-HHHHHHHHHhhcccccEEEEeccccCC
Confidence 7774 444443 458999999999999999987655544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.073 Score=51.53 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=81.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeE-EEe--cchhHHhhCCCCCCceEEEccCCCC---CCCC-CEEEecccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKG-INF--DLPHVIQDAPAFPGVEHVGGDMFVS---VPKG-DAIFIKWICHD 271 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~-~~~--D~~~~~~~a~~~~~v~~~~~D~~~~---~~~~-D~i~~~~~lh~ 271 (366)
....+.|+|..+|.|.++.+|.+. | +-+ .++ +-+..+...-+. ++--+-+|.-++ +|.. |+|...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhhhh
Confidence 456789999999999999999763 3 222 111 112222211111 112222344333 4543 99999998877
Q ss_pred CChH-HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 272 WSDE-HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 272 ~~~~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
+.+. +...+|-++-|.|+|||.++|-|... ...+++.++..-.++....
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------------------vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------------------VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccHH------------------------------HHHHHHHHHHhCcceEEEE
Confidence 6543 56689999999999999999966421 1345667777777775443
Q ss_pred EECC---CceeEEEEEe
Q 017777 351 VSSA---FNTYIMEFLK 364 (366)
Q Consensus 351 ~~~~---~~~~vie~~k 364 (366)
.... ....++.++|
T Consensus 490 d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 490 DTEDGPDGPEKILICQK 506 (506)
T ss_pred ecCCCCCCCceEEEEEC
Confidence 3333 2456777776
|
; GO: 0008168 methyltransferase activity |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0042 Score=50.20 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=54.3
Q ss_pred EEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHH
Q 017777 205 VVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 205 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L 281 (366)
.+-||||.=.+ +|+...+-+. +.+.+.+++.-.++ ++... |+|.+.+++.|+.-++-..++
T Consensus 6 kv~ig~G~~r~-------npgWi~~d~e---------d~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~al 69 (185)
T COG4627 6 KVKIGAGGKRV-------NPGWIITDVE---------DRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSAL 69 (185)
T ss_pred EEEEecccccc-------CCCceeeehh---------cccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 46788886433 3555443321 01223334433333 55543 999999999999989999999
Q ss_pred HHHHHhCCCCcEEEEEcc
Q 017777 282 KNCYEALPVNGKVIVAES 299 (366)
Q Consensus 282 ~~~~~~L~pgG~lli~e~ 299 (366)
+.+++.|||||+|-|.-+
T Consensus 70 kechr~Lrp~G~LriAvP 87 (185)
T COG4627 70 KECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHhCcCcEEEEEcC
Confidence 999999999999988654
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.014 Score=55.40 Aligned_cols=51 Identities=8% Similarity=0.067 Sum_probs=41.0
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV 255 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 255 (366)
.+|||++||+|.++..+++... +++++|. +.+++.++++ .+++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999998888754 7889987 7777766542 478899988754
|
|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.014 Score=53.21 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=47.8
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
+.|++.|.+.+ .|+|+.|||+.+|+ +..-+.|+|..|+..|||+++ .+ .+.|++.+....
T Consensus 31 l~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~----~~---~~~Y~lG~~l~~ 90 (274)
T PRK11569 31 LKLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV----GE---LGHWAIGAHAFI 90 (274)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc----CC---CCeEecCHHHHH
Confidence 34566666532 58999999999999 999999999999999999864 11 578999876543
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.069 Score=45.95 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCeEEEEeCCccHHHHH---HHHhC-CCCeEEEecc--hhHHhhCCCC----CCceEEEccCCCC-----CC----CC-C
Q 017777 202 LNSVVDVGGGIGATLNM---IISKY-PSIKGINFDL--PHVIQDAPAF----PGVEHVGGDMFVS-----VP----KG-D 261 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~~----~~v~~~~~D~~~~-----~~----~~-D 261 (366)
+..|+++|.-.|+.+.- +++.+ ++.+++++|+ ...-..+.+. +||+++.||-.++ .. .. -
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 78999999888876654 44555 7789999997 2222222222 7999999997652 10 12 3
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
++++-..=|.+ +...+.|+.....++||++++|-|...
T Consensus 113 vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 113 VLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp EEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred eEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 44444444443 345678999999999999999987754
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.019 Score=52.19 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=47.5
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+.|++.|.+.+ .++|+.|||+.+|+ +..-+.|+|..|+..|||.++ .. .+.|+++....
T Consensus 28 l~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~----~~---~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD----SQ---LGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc----CC---CCeEEecHHHH
Confidence 45666776543 47999999999999 999999999999999999874 11 57899887554
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.018 Score=51.97 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=47.8
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
+.|++.|... +++|+.|||+.+|+ +..-+.|+|+.|+..|||+++ ++ .++|++.+....
T Consensus 17 l~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~---~~----~~~Y~lG~~~~~ 75 (257)
T PRK15090 17 FGILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE---GE----SEKYSLTLKLFE 75 (257)
T ss_pred HHHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc---CC----CCcEEecHHHHH
Confidence 4566666654 48999999999999 999999999999999999974 11 578999976543
|
|
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.017 Score=41.64 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=43.4
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
|+..+.. ++.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|.+|+.+..++.
T Consensus 11 IL~~l~~----~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK----GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T----T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHHH
Confidence 4555544 58999999999999 999999999999999999752 689999999987663
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.012 Score=50.11 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC------CCCC-CEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS------VPKG-DAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~~~~-D~i~~ 265 (366)
.+.++||+=||+|.++.+.+.+... +++.+|. +..+...+++ .+++++..|.+.. .... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 4689999999999999998887543 6888886 6665555432 4688889887641 1223 99988
Q ss_pred ccccccCChHHHHHHHHHHH--HhCCCCcEEEEE
Q 017777 266 KWICHDWSDEHCVKFLKNCY--EALPVNGKVIVA 297 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~--~~L~pgG~lli~ 297 (366)
---... .. ....+|..+. .+|+++|.+++-
T Consensus 121 DPPY~~-~~-~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 121 DPPYAK-GL-YYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp --STTS-CH-HHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred CCCccc-ch-HHHHHHHHHHHCCCCCCCEEEEEE
Confidence 644433 21 1356777776 788888766653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.019 Score=40.02 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=41.4
Q ss_pred hhChHHHHh-hcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 42 ELDLLEIIA-KAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 42 ~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
++-++..|. .. ++.+..+||+.+++ +...+.+.++-|...|+|++.. .+.|+. ...|++|+.
T Consensus 5 q~~vL~~l~~~~---~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~-~~~d~R-~~~~~LT~~ 67 (68)
T PF13463_consen 5 QWQVLRALAHSD---GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKER-DPHDKR-SKRYRLTPA 67 (68)
T ss_dssp HHHHHHHHT--T---S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEE-ESSCTT-SEEEEE-HH
T ss_pred HHHHHHHHHccC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCcCC-eeEEEeCCC
Confidence 334455555 32 59999999999999 9999999999999999997642 122321 245777765
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.061 Score=45.79 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=60.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC---------CCceEEEccCCC-C---------C-CCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF---------PGVEHVGGDMFV-S---------V-PKG 260 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~~v~~~~~D~~~-~---------~-~~~ 260 (366)
+...|+.+|||--....++....++++++.+|+|++++.-++. .+.+++..|+.+ . + +..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4459999999999999999998788999999999987654431 236789999986 2 1 112
Q ss_pred -CEEEeccccccCChHHHHHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNC 284 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~ 284 (366)
-++++-.++++++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 577778899999999988888875
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.21 Score=46.75 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=59.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHh--------C--------CCCeEEEecchhH--HhhCCC----------CCC--ceE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISK--------Y--------PSIKGINFDLPHV--IQDAPA----------FPG--VEH 248 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~~--~~~a~~----------~~~--v~~ 248 (366)
..+.-+|+|+||.+|..+..+... + |.+.++.-|+|.- -...+. ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456789999999999877764433 1 2345566676321 111111 123 344
Q ss_pred EEccCCC-CCCCC--CEEEeccccccCCh-------------------------------------HHHHHHHHHHHHhC
Q 017777 249 VGGDMFV-SVPKG--DAIFIKWICHDWSD-------------------------------------EHCVKFLKNCYEAL 288 (366)
Q Consensus 249 ~~~D~~~-~~~~~--D~i~~~~~lh~~~~-------------------------------------~~~~~~L~~~~~~L 288 (366)
+++.+.. -+|.. |++++++.||+++. .+...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6788887 57766 99999999997742 11223444445567
Q ss_pred CCCcEEEEEccccCC
Q 017777 289 PVNGKVIVAESILPV 303 (366)
Q Consensus 289 ~pgG~lli~e~~~~~ 303 (366)
+|||++++.-...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999998876655
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.023 Score=50.21 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=62.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCCCCCC--CCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFVSVPK--GDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~~~--~D~i~~~~~lh~ 271 (366)
..+.+|+|||||.-=++.-.....|+..++++|+ ...++.... ..+.++...|.....|. .|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3589999999999999888788888899999998 656555443 25777888899885443 399999999987
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+..+.. ..--++-+.++ .-.++|..++
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPt 210 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPT 210 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEeccc
Confidence 654432 33233344443 2355555544
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.062 Score=51.05 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=67.9
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC------CCceEEEccCCCC--C--CCCCEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS--V--PKGDAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~--~--~~~D~i~~~~~l 269 (366)
..+|||.-||+|..+.+++.+.++. +++..|+ |..++.++++ .++++...|...- . ...|+|.+-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3589999999999999999986544 6888897 7777766542 3577888887752 1 2249998754 3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..+ ..+|..+.+.+++||.|.+.-
T Consensus 124 -Gs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCc----HHHHHHHHHhcccCCEEEEEe
Confidence 212 267889999999999999973
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.024 Score=51.33 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=50.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
-+.|++.|...+ .++|..|||+.+++ +..-+.|+|+.|+..|||+++ .+ ++.|++++....+.
T Consensus 13 al~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~----~~---~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 13 GLMVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRS----AS---DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe----cC---CCcEEEcHHHHHHH
Confidence 355677776643 46999999999999 999999999999999999974 11 47899997665444
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.031 Score=42.44 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL 233 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 233 (366)
......+|||||.|.+..-|.+ .+.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS--EGYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh--CCCCcccccc
Confidence 4567899999999999988877 5678899994
|
; GO: 0008168 methyltransferase activity |
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.022 Score=40.07 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=36.5
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|.+.|.+. +..|..|||..+++ ++..++.+|+.|+..|+|.+.
T Consensus 5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 56777776 58999999999999 999999999999999999974
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.022 Score=36.53 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=31.7
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
|.|..+||+.+++ +...+.+.|+.|...|+++.
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~ 40 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR 40 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 7899999999999 99999999999999999986
|
|
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.014 Score=42.33 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=49.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++++|...|... +..+..+|.+.+++ +...+...|+.|...|+|+...+. .++.-...|++|+.++...
T Consensus 1 vRl~Il~~L~~~---~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~-~~~~p~t~~~lT~~Gr~~~ 69 (80)
T PF13601_consen 1 VRLAILALLYAN---EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEF-EGRRPRTWYSLTDKGREAF 69 (80)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE--SSS--EEEEEE-HHHHHHH
T ss_pred CHHHHHHHHhhc---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEec-cCCCCeEEEEECHHHHHHH
Confidence 467888888875 48999999999999 999999999999999999875221 1110023588888877443
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.01 Score=41.52 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=41.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..++..|-.. ++.|+.|||+.+++ +...+.+.|+-|...|++++.
T Consensus 9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677777654 59999999999999 999999999999999999974
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.045 Score=44.97 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=44.5
Q ss_pred HHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 48 IIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 48 ~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
.|+..+.+++.|+++||+..++ ++..+++++..|...|+|+-. -|+ +|.|++.+..+
T Consensus 16 ~LA~~~~~~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~-----rG~-~GGy~Lar~~~ 72 (150)
T COG1959 16 YLALLPGGGPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSV-----RGK-GGGYRLARPPE 72 (150)
T ss_pred HHHhCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEee-----cCC-CCCccCCCChH
Confidence 3444332348999999999999 999999999999999999853 343 58898885443
|
|
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.044 Score=43.06 Aligned_cols=47 Identities=11% Similarity=0.214 Sum_probs=39.8
Q ss_pred hhChHHHHh-hcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 42 ELDLLEIIA-KAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 42 ~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
+..+|-.|- .+ +|.|+++||+.++. +..-+.+-|+-|...|++.+.+
T Consensus 29 Dv~v~~~LL~~~---~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 29 DVEVYKALLEEN---GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHhhc---CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence 445566665 33 69999999999999 9999999999999999999853
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.037 Score=38.29 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=33.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++|..+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~ 58 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR 58 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 58999999999999 999999999999999999963
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.078 Score=47.73 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=67.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCe-EEEecc-hhHHhhCCCC----------CCceEEEccCCC---CCCC--CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIK-GINFDL-PHVIQDAPAF----------PGVEHVGGDMFV---SVPK--GD 261 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~--~D 261 (366)
..++.++|-||+|.|.+....++. +.+. +..+|+ ..+++..+++ ++|..+.||-+. ..++ .|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999887765 5553 455565 5555554442 689999998765 3333 38
Q ss_pred EEEeccccccCChHH--HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 262 AIFIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|+.-..=-..|... ...+...+.++|||||++++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 887632211111111 23677788999999999998763
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.14 Score=49.64 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=65.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC--CCC---
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV--SVP--- 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~--- 258 (366)
...+.+. ..+..+++|+=||.|.++..++++ ..+++++++ +++++.|+++ .+++|+.+|..+ +..
T Consensus 284 ~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 284 TALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence 4444443 456789999999999999999964 346888887 7777776643 579999999876 222
Q ss_pred CC-CEEEeccccccCChHHHH-HHHHHHHHhCCCCcEEEEE
Q 017777 259 KG-DAIFIKWICHDWSDEHCV-KFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 ~~-D~i~~~~~lh~~~~~~~~-~~L~~~~~~L~pgG~lli~ 297 (366)
.. |+|+.- -|..-+. .+++.+.+ ++|...++|.
T Consensus 361 ~~~d~VvvD-----PPR~G~~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 361 YKPDVVVVD-----PPRAGADREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred CCCCEEEEC-----CCCCCCCHHHHHHHHh-cCCCcEEEEe
Confidence 12 888862 2222222 44555444 5677777774
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.031 Score=38.26 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=37.0
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|.+.|.... +|.+..|||+.+|+ +....+++|..|+..|.++..
T Consensus 4 ~Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4666777621 59999999999999 999999999999999999864
|
|
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.054 Score=44.11 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=48.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.+..++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.. .+.|+. .-...+|+.+..+.
T Consensus 41 ~q~~vL~~l~~~---~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~-~~~DrR-~~~l~LT~~G~~~~ 108 (144)
T PRK11512 41 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CcccCC-eeEeEEChhHHHHH
Confidence 344557777654 48999999999999 9999999999999999999752 112211 12356666665544
|
|
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.03 Score=38.17 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=39.4
Q ss_pred HhhChHHHHhhcCCCCC--CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAF--MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~--~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++.++..|...+ + .|..|||+.+++ ++..+.+.++.|+..|+|++.
T Consensus 6 ~q~~vL~~l~~~~---~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 6 SQFRVLMALARHP---GEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHHHHHHHHHST---TSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3556677777753 4 899999999999 999999999999999999975
|
... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.13 Score=47.29 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV 255 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~ 255 (366)
++++++.+. ..++..++|.=+|.|..+..+++..|+.+++++|. |.+++.+++. .|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777765 55667999999999999999999988789999998 8887776542 467777777653
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.32 Score=45.33 Aligned_cols=96 Identities=22% Similarity=0.156 Sum_probs=73.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--CC-CCCCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--SV-PKGDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~-~~~D~i~~~~~l 269 (366)
.+.+|||.=+|.|.++..++....- +++.+|+ |..++..+++ .++..+.+|..+ +. +.+|-|++...-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4789999999999999998886433 4999998 8887766542 458899999887 23 345888876543
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
...+++..+.+.+++||.+...+....+
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 1236788888889999999998887654
|
|
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.058 Score=46.75 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCC--ccccccccchhchh
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDG--KVERLYGLAPVCKF 115 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g--~~~~~y~~t~~~~~ 115 (366)
.|...|.+. +|+|+.|||+++|+ ++..+++.|+.|++.|+++.. ....| .-.-.|++|..+..
T Consensus 15 ~il~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~--~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVE--RQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeee--eccCCCCCCceeeeecccchh
Confidence 466677766 69999999999999 999999999999999999864 11211 11235888877665
|
|
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.089 Score=41.20 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=53.7
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
+..+..++..|... ++.|..+||+.+++ +...+.+.++-|+..|+|++.. .+.|.. .-.+.+|+.+..+..
T Consensus 27 t~~q~~iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~-~~~D~R-~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 27 TEQQWRILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLK-ASNDQR-RVYISLTPKGQALYA 97 (118)
T ss_pred CHHHHHHHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHHHHH
Confidence 34455688888775 48999999999999 9999999999999999999742 112211 136888888876664
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.077 Score=39.81 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=49.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|+... ...++ ....|.+|+.+..+.
T Consensus 11 ~~~~il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~-~~~~~-r~~~~~lT~~g~~~~ 78 (101)
T smart00347 11 TQFLVLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLP-SPEDR-RSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecC-CCCCC-CeEEEEECHhHHHHH
Confidence 356677888765 47999999999999 9999999999999999998641 00111 123566676665444
|
|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.084 Score=42.22 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=39.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+|.|.++||+.+++ ++..++++|+.|...|+|... .|. ++.|.++...
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~-----~g~-~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESV-----RGP-GGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEec-----cCC-CCCccCCCCH
Confidence 48999999999999 999999999999999999852 121 3567776443
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.1 Score=45.04 Aligned_cols=56 Identities=13% Similarity=0.274 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 31 SVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 31 ~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+-+..++...++..|++.|... +|+.+.|||+++++ ++.-+..-+..|+..|++..
T Consensus 14 ~dv~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT 69 (308)
T COG4189 14 LDVLKALASKVRVAILQLLHRK---GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRT 69 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceee
Confidence 3456788899999999999987 59999999999999 99999999999999999975
|
|
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.088 Score=45.63 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..|+..|... ++.|..+||+.+++ ++..+++.|+.|...|+|+........|.-.-.|.+|+.+....
T Consensus 4 ~~IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 4 EDILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 4577777765 58999999999999 99999999999999999986410011121123478887776544
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.11 Score=43.39 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
+|.|+++||+++++ ++..++++|..|...|+|... -|. ++.|.+..-
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~-----rG~-~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSV-----RGP-GGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCC-CCCeeccCC
Confidence 48999999999999 999999999999999999952 122 467888743
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.079 Score=48.31 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCCC------CCCCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVSV------PKGDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------~~~D~i~~ 265 (366)
...+|||+=|=+|.++...+.. .-.+++.+|. ..+++.++++ .++++++.|+++.. ...|+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999977653 3337899997 6667666542 57899999998621 22399987
Q ss_pred c---cccccCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 K---WICHDWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~---~~lh~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
- +.=..+. ..+...+++.+.++|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 1111121 12456889999999999999887653
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.43 Score=42.41 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC------------CCceEEEccCCCC------CCC-CC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF------------PGVEHVGGDMFVS------VPK-GD 261 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------~~v~~~~~D~~~~------~~~-~D 261 (366)
...+||++|+|+|..+... ......+++.-|.+..++..+.. ..+.+...+-..+ .+. .|
T Consensus 86 ~~~~vlELGsGtglvG~~a-a~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILA-ALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHH-HHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4678999999999665544 34466788888876665443221 1344433332221 233 59
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
+|+.+.+++.-. ....+++.++..|..++.+++.-...+
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999999998633 234678888888988886666555444
|
|
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.072 Score=35.17 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHH
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLL 85 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 85 (366)
.-.+|.+|++.|-||.=. ..|..|||+.+|+ ++..+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~PR------~~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDVPR------RITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCCCC------cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 346899999999999843 5799999999999 777777766643
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.098 Score=40.97 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 30 ASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 30 ~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++-..+.+-+--.+.|++.|... +|.|+.|+|+..|- +...+.|-|+.|+-.|++...
T Consensus 54 Sye~la~vLsp~nleLl~~Ia~~---~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 54 SYEDLARVLSPRNLELLELIAQE---EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred cHHHHHHHhChhHHHHHHHHHhc---CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 34445566677788899999987 59999999999999 999999999999999999973
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.08 Score=42.65 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
++.|+++||+.+++ ++..++++|+.|...|+|... .|+ .|.|.++...
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~-----~G~-~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSV-----RGP-GGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE-----eCC-CCCEeccCCH
Confidence 48999999999999 999999999999999999842 122 4668877543
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.39 Score=40.69 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=62.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC--CC----CCCCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV--SV----PKGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~----~~~D~i~~~ 266 (366)
.+.++||+=+|+|.++.+.+.+... +++.+|. ..++...++ ..+++++..|... .. +..|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 4689999999999999999987654 6777775 444433332 3678888888763 11 124999987
Q ss_pred ccccc-CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 267 WICHD-WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 267 ~~lh~-~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
--++. +-+.+...++-.-..+|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 66652 111122222222457799999887743
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.43 Score=46.48 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=82.1
Q ss_pred CchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCC--CCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-h
Q 017777 162 NAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEG--LNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-P 234 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 234 (366)
..|+.+++|+-....|.++. ...+.+..++.+. ...|+-+|+|.|-+..+.++. ...++++.++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 34666777876666666644 3356666553333 568899999999877665544 34567777774 6
Q ss_pred hHHhhCCC------CCCceEEEccCCC-CCC--CCCEEEeccccccCChHH-HHHHHHHHHHhCCCCcEEEE
Q 017777 235 HVIQDAPA------FPGVEHVGGDMFV-SVP--KGDAIFIKWICHDWSDEH-CVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 235 ~~~~~a~~------~~~v~~~~~D~~~-~~~--~~D~i~~~~~lh~~~~~~-~~~~L~~~~~~L~pgG~lli 296 (366)
.++-..+. ..+|+++..||.+ ..| +.|++++ ..|--|.|.+ ..+-|..+-+.|||+|.-|=
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 55443332 1689999999988 444 2387764 3444444433 23558888899999976554
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.043 Score=37.03 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=39.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.++..|.+. ++.+..+||+.+++ ++..+.++++-|+..|++++.
T Consensus 5 q~~iL~~l~~~---~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 5 QFRILRILYEN---GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 45566667776 48999999999999 999999999999999999974
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.64 Score=43.84 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=73.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCC---------------------------------------eEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSI---------------------------------------KGI 229 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 229 (366)
+..++. +.+|.+...++|==||+|.++++.+...+++ .++
T Consensus 180 AaAil~-lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILL-LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHH-HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 334444 3347777899999999999999988777532 166
Q ss_pred Eecc-hhHHhhCCCC-------CCceEEEccCCC-CCC--CCCEEEeccccc-cCChHHH-----HHHHHHHHHhCCCCc
Q 017777 230 NFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP--KGDAIFIKWICH-DWSDEHC-----VKFLKNCYEALPVNG 292 (366)
Q Consensus 230 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~--~~D~i~~~~~lh-~~~~~~~-----~~~L~~~~~~L~pgG 292 (366)
++|+ +.+++.|+.+ +.|+|.++|+.. ..+ +.|+|+++--.- -+.++.. ..+.+.+++.++--+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 8998 8888877653 569999999876 333 448888864331 1222221 245566667777666
Q ss_pred EEEEEc
Q 017777 293 KVIVAE 298 (366)
Q Consensus 293 ~lli~e 298 (366)
+.+++.
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 777654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.35 Score=46.77 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=71.8
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh-----CCCCCCceEEEccCCC-CCCC--CCEEEeccccccCC
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD-----APAFPGVEHVGGDMFV-SVPK--GDAIFIKWICHDWS 273 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~v~~~~~D~~~-~~~~--~D~i~~~~~lh~~~ 273 (366)
-+++-+|||.-.+...+-+.. --.++-+|. +.+++. ++..+...+...|+.. .++. .|+++....++.+-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 389999999999888877653 224566665 333332 2334678888999887 6764 39999999998752
Q ss_pred -hH-------HHHHHHHHHHHhCCCCcEEEEEccc--cCCC
Q 017777 274 -DE-------HCVKFLKNCYEALPVNGKVIVAESI--LPVT 304 (366)
Q Consensus 274 -~~-------~~~~~L~~~~~~L~pgG~lli~e~~--~~~~ 304 (366)
++ .....+..+.++|+|||+.+.+... .+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 22 2335689999999999998888773 4444
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.071 Score=45.93 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=56.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---CCCC-CEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---VPKG-DAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~~~-D~i~~~~~ 268 (366)
....|+|.-||.|+.+..++..+|. ++.+|+ |.-+..|+.+ +||.|++||+++- +.-. |.+.+...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4678999999999999999998875 566665 6666666653 6999999999872 2111 33333222
Q ss_pred cccCC-hHHHHHHHHHHHHhCCCCc
Q 017777 269 CHDWS-DEHCVKFLKNCYEALPVNG 292 (366)
Q Consensus 269 lh~~~-~~~~~~~L~~~~~~L~pgG 292 (366)
--.|+ +...+.-+-.+...+.|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 22232 2233344455555566654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.19 Score=46.17 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMF 254 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 254 (366)
+.++++.+. ..+...++|.=-|.|+.+..+++.+|+.+++++|. |.+++.+++. +|+.++..+|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 556777776 66778999999999999999999999999999998 8888766542 56777666654
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.04 Score=42.12 Aligned_cols=85 Identities=16% Similarity=0.301 Sum_probs=42.9
Q ss_pred CEEEecccc---c-cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 261 DAIFIKWIC---H-DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 261 D~i~~~~~l---h-~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
|+|+|..|- | +|.|+-...+++++++.|+|||.+++=-.-........ .......-.+ ......++++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~F 74 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQF 74 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTT---TS-HHHHHHH-----HH----GGGH
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHHH
Confidence 788776554 2 45788889999999999999999988321111100000 0000000001 1112335567
Q ss_pred HHHHHH--cCCceeEEEEC
Q 017777 337 RALAKA--AGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~--aGf~~~~~~~~ 353 (366)
.+.|.+ .||+.++....
T Consensus 75 ~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 75 EDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHTSTTT---EEEEE--
T ss_pred HHHHHhcccceEEEEEccc
Confidence 887777 69998875554
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.27 Score=46.13 Aligned_cols=109 Identities=16% Similarity=0.319 Sum_probs=73.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc---hhHHhhCC-------------CCCCceEEEccCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL---PHVIQDAP-------------AFPGVEHVGGDMF 254 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~-------------~~~~v~~~~~D~~ 254 (366)
.+.+.+. ........|+|+|.|.+...++.....-.-+|+.+ |.-+.... +...++++.+++.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 3444444 56778899999999999887766544434455553 32222211 1245888899988
Q ss_pred CC------CCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 255 VS------VPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 255 ~~------~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
.+ .+++++|+.+++... ++...=++++..-+++|-+++-.+++.+.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred CHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEecccccccc
Confidence 73 245699999988864 33333455888889999999999987763
|
|
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.16 Score=45.30 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=58.5
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
++....+.+|+=.|.+ ||.|.+||-..+++ ++..+..-++-|...|++.++ ++.|++|.++..
T Consensus 9 if~SekRk~lLllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~---------~~~Y~LS~~G~i 71 (260)
T COG4742 9 LFLSEKRKDLLLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE---------GDRYSLSSLGKI 71 (260)
T ss_pred HHccHHHHHHHHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec---------CCEEEecchHHH
Confidence 4556778889999998 59999999999999 999999999999999999973 699999999887
Q ss_pred hhc
Q 017777 116 LTK 118 (366)
Q Consensus 116 l~~ 118 (366)
++.
T Consensus 72 iv~ 74 (260)
T COG4742 72 IVE 74 (260)
T ss_pred HHH
Confidence 774
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.31 Score=39.31 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=67.4
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~ 260 (366)
++++..+. -.+..+.+|+|.|.|....+.++.. -...+++++ |..+..++- ..+.+|...|+++ +..++
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34555444 3445799999999999887666543 345677877 555544432 1678899999998 77665
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
..++.+.+=.. ...+-.+++.-|+.+.+++-.-+-.|.
T Consensus 140 ~~vviFgaes~-----m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGAESV-----MPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeehHHH-----HhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 22222222111 124456677778888888887665544
|
|
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.18 Score=40.99 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=43.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++.+||+.+++ +++.+.+.++.|...|+|... . ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~----~----~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE----K----YRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe----c----CceEEECHHHHHHH
Confidence 58899999999999 999999999999999999853 1 36789998887544
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.26 Score=41.67 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
...|++.|... |++|.++||..+|+ +...+++.|..|...|++..
T Consensus 24 ~~~Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 24 GFEVLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred HhHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 34589999886 59999999999999 99999999999999999985
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.15 Score=34.31 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=39.4
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|++.|.+. +..|++|||+.+++ ++.-++|=|..|+..|++.+.
T Consensus 4 ~Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 367778876 59999999999999 999999999999999999874
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.28 Score=42.64 Aligned_cols=101 Identities=26% Similarity=0.337 Sum_probs=69.4
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhC----C-C-C---eEEEecchhHHhhCCCCCCceEEEccCCCC------
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKY----P-S-I---KGINFDLPHVIQDAPAFPGVEHVGGDMFVS------ 256 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p-~-~---~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~------ 256 (366)
+-+.+.-+.+..+++|+-...|.++.-|.++. + . - .++.+|+..|.. .++|..+++|+..+
T Consensus 32 ideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 32 IDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHH
Confidence 33344435567899999999999988877764 2 1 1 278889866532 46788889998762
Q ss_pred ---CC--CCCEEEec-----cccccCCh----HHHHHHHHHHHHhCCCCcEEEE
Q 017777 257 ---VP--KGDAIFIK-----WICHDWSD----EHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 257 ---~~--~~D~i~~~-----~~lh~~~~----~~~~~~L~~~~~~L~pgG~lli 296 (366)
+. .+|+|++- --+|.++. +-....|.-...+|+|||.++-
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 22 23999984 45677642 1234567777889999999875
|
|
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.2 Score=32.48 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=36.9
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+++.|.+. ++.+..+||+.+++ ++.-+.+.|..|...|++..
T Consensus 5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 55666654 48999999999999 99999999999999999986
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.73 Score=43.93 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=30.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------CCCeEEEecc
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------PSIKGINFDL 233 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 233 (366)
..|++.+. -.+..+|+|+|.|.|.--..|.+.+ |.+++|+++.
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 35677666 4467899999999997444444442 7788999986
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.2 Score=38.44 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=41.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|... ++.|..+||+.+|+ ++..+++.++.|...|++..
T Consensus 4 ~D~~il~~L~~~---~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD---ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 467788888886 58999999999999 99999999999999999984
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.15 Score=41.36 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=38.7
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+.+.++||+.+++ ++..+++.|..|...|+|+.. .|+ ++.|.+..
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~-----~G~-~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAV-----RGK-NGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEe-----cCC-CCCeeecC
Confidence 47899999999999 999999999999999999863 332 46777764
|
|
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.94 Score=37.24 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 19 EANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
+.++.+...-.....-.++. -|+..+... ++.+..+||+.+++ ++..+.++++.|...|+|...
T Consensus 21 ~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---- 84 (152)
T PRK11050 21 EGFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---- 84 (152)
T ss_pred HHHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----
Confidence 35555555554444333332 355566554 48999999999999 999999999999999999863
Q ss_pred CCCccccccccchhchhhh
Q 017777 99 PDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~ 117 (366)
+ ...+.+|+.+..+.
T Consensus 85 -~---~~~v~LT~~G~~l~ 99 (152)
T PRK11050 85 -P---YRGVFLTPEGEKLA 99 (152)
T ss_pred -c---CCceEECchHHHHH
Confidence 1 24567777665544
|
|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.18 Score=40.18 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
++.++.|||+.+++ ++..+.+.|+.|...|++... .|. .+.|.+.+
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~-----~g~-~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSK-----RGV-EGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEec-----CCC-CCChhhcC
Confidence 58999999999999 999999999999999999852 121 35677754
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.19 Score=37.25 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=47.0
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
|+..|.. ||.+..||.+.+ ++ ++..|.+-|+.|...|+|++... +. ....-.|++|+.+..+..
T Consensus 10 IL~~l~~----g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~-~~-~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ----GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVY-PE-VPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT----SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEE-SS-SSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh----CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccc-cC-CCCCCccCCCcCHHHHHH
Confidence 4555666 599999999999 89 99999999999999999987521 11 001246999998887663
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.31 Score=33.87 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=43.4
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNP-DAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
|++.|.+.+ +|++..+|++.+..+-- ..+..+++.|++|...|++.+. | ...+.+|..+.
T Consensus 3 IL~~L~~~~--~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~------g--~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESD--KPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKV------G--RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcccc------C--CcccccCHHHH
Confidence 566777654 79999999999987321 1468899999999999977742 1 23456776554
|
|
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.32 Score=40.06 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++.+..+||+.+++ .++-+..+++-|...|+++.. . .+.+.+|+.+...+.
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~----~----y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE----P----YGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe----c----CCCeEEChhhHHHHH
Confidence 69999999999999 999999999999999999984 1 477999988876553
|
|
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.23 Score=40.93 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=40.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
.+.|+++||+..++ ++..++++|..|...|+|+-. -|+ .|.|.++...
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~-----rG~-~GGy~La~~p 70 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETV-----RGR-NGGVRLGRPA 70 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeeecCCH
Confidence 47899999999999 999999999999999999853 243 5788887543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.28 Score=47.64 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=43.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV 255 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 255 (366)
++....+||+=||||.++..+++.. .+++++.+ |+.++.|+.+ .+.+|+++-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 6677999999999999999999854 46777765 7777777653 678999984333
|
|
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.32 Score=41.19 Aligned_cols=75 Identities=12% Similarity=0.246 Sum_probs=54.2
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
..+|.-..++.|++.|...+ .+.|+.+|++.+ ++ +..-+.|.|+.|+..|+|....+...-|..+..|+++..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~ 78 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNK--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEE 78 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccc
Confidence 34666678889999998753 249999999999 67 788899999999999999975211001111346777775
Q ss_pred ch
Q 017777 113 CK 114 (366)
Q Consensus 113 ~~ 114 (366)
+-
T Consensus 79 ~~ 80 (178)
T PRK06474 79 DA 80 (178)
T ss_pred ee
Confidence 53
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.21 Score=47.19 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=42.1
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDM 253 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~ 253 (366)
.++.+.+.++ ..+. .|||+=||.|.++..|+.... ++++++. +++++.|+++ .+++|+.++.
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 3445555555 3433 799999999999999988654 6888886 7777777642 6789987654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.63 E-value=2.1 Score=39.96 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEcc---CCCCCCC-CCEEEeccccccC
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGD---MFVSVPK-GDAIFIKWICHDW 272 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~~~~~-~D~i~~~~~lh~~ 272 (366)
..+..+|+=+|+| .|..+.++++... .+++.+|. ++-.+.+++...-.++... ..+...+ .|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4457788888876 6678888999876 89999998 6667777766555555533 2222222 477765433 1
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
..+....+.|++||+++++-...
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCCC
Confidence 34777788999999999988763
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.60 E-value=2.3 Score=40.23 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhC----CCC--CCceEEEccCCC---CCCC---CCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDA----PAF--PGVEHVGGDMFV---SVPK---GDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a----~~~--~~v~~~~~D~~~---~~~~---~D~i 263 (366)
...+.+|||.-++.|.=+..+++..++ ..++.+|. +.-++.. ++. .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 566799999999999999999998876 44578886 3333332 221 446677766542 1221 3777
Q ss_pred Ee------ccccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 264 FI------KWICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 264 ~~------~~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
++ ..+++ .++..+ -.++|+.+.+.|||||.|+-..-..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 65 34443 333222 2589999999999999999877544
|
|
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.4 Score=36.97 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHhhChHHHHh--hcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIA--KAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~--~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..++.++..|. .. ..++.|..+||+.+++ ++..+.+.++.|+..|+|.+.
T Consensus 25 ~~q~~vL~~l~~~~~-~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~ 76 (109)
T TIGR01889 25 LEELLILYYLGKLEN-NEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKE 76 (109)
T ss_pred HHHHHHHHHHHhhhc-cCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecc
Confidence 44556666666 21 1158999999999999 999999999999999999975
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.5 Score=44.98 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=51.8
Q ss_pred CCceEEEccCCC---CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 244 PGVEHVGGDMFV---SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 244 ~~v~~~~~D~~~---~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
++|+++.+++.+ ..|.+ |.+++...+.++++++..+.++.+.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999998876 34443 9999999999999999999999999999999999998776543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.18 Score=29.39 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVL 91 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 91 (366)
|+|-+|||+.+|+ .+.-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 6789999999999 999999999999998875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=2.1 Score=34.64 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=46.9
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
-++..|...+ ++.|..+||+.+++ ++..+.+.++-|+..|+|++.. .+.|.. .-...+|+.+..+.
T Consensus 35 ~vL~~l~~~~--~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~ 100 (144)
T PRK03573 35 VTLHNIHQLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQT-CASDRR-AKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeec-CCCCcC-eeeeEEChHHHHHH
Confidence 3566666532 36899999999999 9999999999999999999752 112211 12466776666555
|
|
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.39 Score=41.60 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=46.7
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
.++.++..|.+. ++.+..+||+.+++ ++.-+.+.|+.|...|++.+.. . . ...|.+|+.
T Consensus 144 ~~~~IL~~l~~~---g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~---~--r-~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAE---GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG---R--K-GKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc---C--C-ccEEEeCCC
Confidence 355677788775 48899999999999 9999999999999999999741 0 0 356777654
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.47 Score=33.84 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=38.1
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|=|.|... |..+..+||..+++ +++.++.+|..++..|-+++.
T Consensus 7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 34667765 59999999999999 999999999999999999974
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.33 Score=32.97 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.+..+||+.+++ .++-+..+++-|...|+++..
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 69999999999999 999999999999999999963
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.41 Score=38.61 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=46.2
Q ss_pred eEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCCC-C-CEEEeccccccCC---------hHHHHHHHHHH
Q 017777 227 KGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVPK-G-DAIFIKWICHDWS---------DEHCVKFLKNC 284 (366)
Q Consensus 227 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~~-~-D~i~~~~~lh~~~---------~~~~~~~L~~~ 284 (366)
++++||+ +++++..++. .+++++..+-.. -.++ . |+++++ |-++| .+.-...|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 4788998 7777766542 578888765443 2444 3 888776 33333 12346889999
Q ss_pred HHhCCCCcEEEEEccc
Q 017777 285 YEALPVNGKVIVAESI 300 (366)
Q Consensus 285 ~~~L~pgG~lli~e~~ 300 (366)
.+.|+|||.+.|+-..
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999997553
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=88.96 E-value=8.3 Score=34.11 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=49.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCCCCCC---C--CEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFVSVPK---G--DAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~~~---~--D~i~~~~~l 269 (366)
.+++||=||=. -..+.+++...+..+++++|+ ...++..++ .-.|+.+..|+..++|+ + |+++.--.
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 35889999844 334444555556668999987 555554432 13489999999998774 2 99987432
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
++.+-..-++.+...+||.-|....
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEE
Confidence 2335567899999999986663333
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.5 Score=32.98 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=38.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++.++..|.+ ++.+..+||+.+++ +...+++-++.|.+.|+...
T Consensus 2 ~~~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~ 45 (69)
T TIGR00122 2 PLRLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVL 45 (69)
T ss_pred hHHHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 4567788887 48999999999999 99999999999999999654
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.64 Score=31.26 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=36.1
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|+..|.. ++.|..+|++.+++ +..-+.+.|+.|...|++...
T Consensus 2 il~~l~~----~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 2 ILKLLAE----GELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred HHHHhhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 4555553 48999999999999 999999999999999999963
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.44 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-|-|+.|||+.+|++ ++..+.+.|+.|+..|+|++.
T Consensus 24 ~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 24 YPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp S---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 477999999999992 388999999999999999973
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.54 E-value=3.3 Score=39.57 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=62.2
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEcc----CCC---CC-CC-C-CEEEec
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGD----MFV---SV-PK-G-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D----~~~---~~-~~-~-D~i~~~ 266 (366)
.....+||.+|||. |..+..+++...-.++++++. ++..+.+++...+.++... +.+ .. +. + |+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678899999987 889999999876445777775 6666666544233332211 111 11 11 3 777553
Q ss_pred c---------------ccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 267 W---------------ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 267 ~---------------~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
- +|+..++. ...++.+.+.|+|+|++++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcCC
Confidence 1 11222222 35688899999999999998643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.61 Score=38.63 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=39.7
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..|++.|... +.+|-+|||..+|+ +..-+++.|..|...|++...
T Consensus 17 v~Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 4578888755 59999999999999 999999999999999999753
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.82 Score=35.74 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=44.3
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+..+...|.+.+.+. |.+|..+++..+|+ +...++++++.|++.|-|..
T Consensus 10 r~eLk~rIvElVRe~---GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~ 58 (127)
T PF06163_consen 10 REELKARIVELVREH---GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYR 58 (127)
T ss_pred HHHHHHHHHHHHHHc---CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEe
Confidence 456677888999987 69999999999999 99999999999999999985
|
|
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.69 Score=30.54 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=33.0
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYS 89 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g 89 (366)
.|+..|.+.+ +++|.++||+.+++ +.+-+++-+..|...|
T Consensus 4 ~il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 4566674432 57999999999999 9999999999999999
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.62 E-value=0.68 Score=37.41 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=37.9
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+++.|.. |..|..|||+++|+ +....+-.|..|+..|.+.+.
T Consensus 15 eILE~Lk~----G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLLAD----GCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHHhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 46677744 68999999999999 999999999999999999975
|
|
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=87.36 E-value=0.79 Score=31.89 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=38.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..|+..+... +.+..||++.+++ +..-+.+.|+.|...|++...
T Consensus 9 ~~~il~~l~~~----~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~ 53 (78)
T cd00090 9 RLRILRLLLEG----PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESR 53 (78)
T ss_pred HHHHHHHHHHC----CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEE
Confidence 44567777763 5999999999999 999999999999999999864
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.34 E-value=1.5 Score=40.02 Aligned_cols=66 Identities=23% Similarity=0.239 Sum_probs=52.8
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCe-EEEecc-hhHHhhCCCC-----CCceEEEccCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIK-GINFDL-PHVIQDAPAF-----PGVEHVGGDMF 254 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 254 (366)
.+.++++.+. ..+...++|.-=|.|+.+..+++.+|... ++++|. |.+++.+++. +|+.++..+|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 3556777776 66779999999999999999999998665 999997 8888877652 47777776654
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=86.53 E-value=0.7 Score=34.65 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=37.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
.++|..|||+.+++ ++.-+.|.|+.|+..|+|... .| .+.|..+
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~-----~~--~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ-----GM--MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee-----cC--CceeecC
Confidence 48999999999999 999999999999999999963 22 4777776
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=85.96 E-value=1.3 Score=45.73 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=55.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhC-------C-----CCeEEEecc-h---hHHhhCC----------------------C
Q 017777 201 GLNSVVDVGGGIGATLNMIISKY-------P-----SIKGINFDL-P---HVIQDAP----------------------A 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~ 242 (366)
..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34799999999999777766544 3 356677763 2 1111110 0
Q ss_pred C-------C--CceEEEccCCCC---CCC-CCEEEecc-ccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 243 F-------P--GVEHVGGDMFVS---VPK-GDAIFIKW-ICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 243 ~-------~--~v~~~~~D~~~~---~~~-~D~i~~~~-~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
. . ++++..+|+.+- ... .|++++-. .-..-|+--...+|+.+++.++|||++.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0 1 233455676541 222 38887632 111112222347899999999999988753
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=85.89 E-value=15 Score=30.61 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=70.5
Q ss_pred EeCCccHHHHHHHHhCC---CCeEEEecc-hhHHhhCCC---------CCCceEE-EccCCC--C-C--CC--CCEEEec
Q 017777 208 VGGGIGATLNMIISKYP---SIKGINFDL-PHVIQDAPA---------FPGVEHV-GGDMFV--S-V--PK--GDAIFIK 266 (366)
Q Consensus 208 vG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~~-~~D~~~--~-~--~~--~D~i~~~ 266 (366)
||=|.=.++..|++.++ ++.++.+|. .+..+.... ..++.++ ..|..+ . . .. .|.|+++
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56666678888888877 344566675 333322221 1344433 335544 1 2 11 2999886
Q ss_pred cccccCC----h-------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHH
Q 017777 267 WICHDWS----D-------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 267 ~~lh~~~----~-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
+-.-... . +=...+++.++..|+++|.+.|.-.... .++.=.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCcccc
Confidence 5433210 1 1235788999999999999998543211 112223
Q ss_pred HHHHHHHcCCceeEEEECC
Q 017777 336 FRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~~ 354 (366)
+.++.+++||..++..+..
T Consensus 136 i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHhcCCEEEEEecCC
Confidence 5578888999998887764
|
|
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=85.86 E-value=0.94 Score=35.13 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=39.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNP-DAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+.-|++.|...+ .+.|++||.+.+.-..+ .+..-+-|.|+.|+..|++.+.
T Consensus 3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 455788887643 68999999999843211 2777889999999999999974
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.92 Score=39.59 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=42.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..+|..+||+.+++ ++..+.+.|+.|...|++++.. ++ ....+.+|+.+..++
T Consensus 20 ~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~----~~-r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTI----VP-RGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEE----cC-CceEEEECHHHHHHH
Confidence 46899999999999 9999999999999999998741 11 146688887776555
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=85.79 E-value=0.92 Score=30.14 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=31.0
Q ss_pred CC-CHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 57 FM-SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 57 ~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+ |..+||+.+++ +...+++.|+.|...|++..
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 45 89999999999 99999999999999999985
|
|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=0.97 Score=37.17 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=42.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
..+..|++.|..+ +..+..+||+++|+ ++..+.+=++-|...|++..
T Consensus 9 ~~D~~Il~~Lq~d---~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMEN---ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 3577889999886 69999999999999 99999999999999999984
|
|
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=0.84 Score=38.02 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=42.8
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
..+..|+..|.+. +..|..+||+++|+ ++..+.+=++-|...|++..
T Consensus 14 ~~D~~IL~~Lq~d---~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 14 RIDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHhccC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4678899999886 69999999999999 99999999999999999984
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.18 E-value=5.1 Score=37.85 Aligned_cols=93 Identities=24% Similarity=0.172 Sum_probs=64.0
Q ss_pred CeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCC--------C-CCCCC-CEEEeccccc
Q 017777 203 NSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMF--------V-SVPKG-DAIFIKWICH 270 (366)
Q Consensus 203 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~--------~-~~~~~-D~i~~~~~lh 270 (366)
.+|+=+||| .|.++..+++.+.-.++++.|. +.-++.|++........-.-. + ....+ |+++=..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 389999999 5777788888888888999997 888888876322222211111 1 11223 88875544
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
....+..+.++++|||++.+.-....+
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 124688899999999999998776544
|
|
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=85.13 E-value=0.96 Score=33.68 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=38.4
Q ss_pred HHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 60 PKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 60 ~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.+||+.+++ ++..+.+.++.|...|+|.+. + +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~-----~---~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE-----P---YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc-----C---CCceEechhHHHHH
Confidence 5789999999 999999999999999999974 1 34688887776554
|
iron dependent repressor |
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.85 E-value=0.68 Score=34.48 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=43.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++....-|.-.+++ +-...+..++.|+..|++... ++|. ...|.+|+.+..|+.
T Consensus 30 ~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~----~~~~-~~~y~lT~KG~~fle 83 (95)
T COG3432 30 GGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQ----DNGR-RKVYELTEKGKRFLE 83 (95)
T ss_pred CCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEec----cCCc-cceEEEChhHHHHHH
Confidence 58888899999999 999999999999999966652 2221 247999999987764
|
|
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=1.1 Score=37.71 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=49.1
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++.++-.|... ..++.|..|||+.+++ +...+.++++-|+..|+|++.. .++|+. .-...+|+.+..++.
T Consensus 57 q~~iL~~L~~~-~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~-~~~DrR-~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQ-ENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE-SDNDRR-CLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcC-CCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHHH
Confidence 34556666532 1257899999999999 9999999999999999999752 122211 124667777766553
|
|
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=84.58 E-value=1.5 Score=32.46 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=51.0
Q ss_pred HHHhhChHHHHhhc-CCCCCCCHHHHHhhCCCCCCCCcchHHHHHH----------HHhccccc-ccccccCCCCccccc
Q 017777 39 SAIELDLLEIIAKA-GPDAFMSPKDIASQLPTKNPDAHTVLDRILR----------LLASYSVL-NCSLRNLPDGKVERL 106 (366)
Q Consensus 39 ~a~~lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~----------~L~~~g~l-~~~~~~~~~g~~~~~ 106 (366)
.=++..||..|... | .+.++.|||..+++ ++..+..-|+ .|+.+|++ .+. ...| ...
T Consensus 8 S~~R~~vl~~L~~~yp--~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~---~~~g--~k~ 76 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYP--EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEE---EKGG--FKY 76 (90)
T ss_pred HHHHHHHHHHHHHcCC--CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEee---ecCC--eeE
Confidence 45677888888886 4 68999999999999 8888777765 48899999 332 1233 458
Q ss_pred cccchhchhhh
Q 017777 107 YGLAPVCKFLT 117 (366)
Q Consensus 107 y~~t~~~~~l~ 117 (366)
|++|+.+..++
T Consensus 77 Y~lT~~G~~~~ 87 (90)
T PF07381_consen 77 YRLTEKGKRIA 87 (90)
T ss_pred EEeChhhhhHH
Confidence 99998776544
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=84.11 E-value=1.2 Score=36.32 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..+..|+..|.+. ++.+..+||+++|+ ++..+.+-++-|...|++...
T Consensus 8 ~~D~~IL~~L~~d---~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 8 DIDRRILRLLQED---ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 3567788999986 69999999999999 999999999999999999853
|
|
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=83.43 E-value=0.98 Score=34.49 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=33.3
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.|++.|... |.++-++||+.+++ ++.-++++|..|...|++..
T Consensus 17 ~Il~~L~~~---~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~ 59 (105)
T PF02002_consen 17 RILDALLRK---GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY 59 (105)
T ss_dssp HHHHHHHHH-----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred HHHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence 467888865 58999999999999 99999999999999999975
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.05 E-value=1.1 Score=44.46 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=55.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcCC
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~ 120 (366)
.+..|+..|... ++.|..+||+.+++ ++..+.+.++-|.+.|+|+... . ....|.+|+.++.++...
T Consensus 7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~---~---~~~~i~LTeeG~~~~~~g 73 (489)
T PRK04172 7 NEKKVLKALKEL---KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE---R---VEEVYVLTEEGKKYAEEG 73 (489)
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe---e---eEEEEEECHHHHHHHHhc
Confidence 456677777765 48999999999999 9999999999999999999741 1 136799999999777654
Q ss_pred C
Q 017777 121 D 121 (366)
Q Consensus 121 ~ 121 (366)
.
T Consensus 74 ~ 74 (489)
T PRK04172 74 L 74 (489)
T ss_pred C
Confidence 4
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=82.97 E-value=2 Score=29.13 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 58 MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 58 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.|..+||+.+++ +...+++.|..|...|+|+.
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 359999999999 99999999999999999985
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=82.90 E-value=2.6 Score=38.49 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=66.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCC----CC--CCceEEEccCCCC----CCC-CCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAP----AF--PGVEHVGGDMFVS----VPK-GDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~----~~--~~v~~~~~D~~~~----~~~-~D~i~~ 265 (366)
..+..+|||..++.|.=+..+++... ...++..|. +.-+...+ +. ..+.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999887 557888886 44433332 22 4566666665432 122 377765
Q ss_pred ------ccccccCChH-------H-------HHHHHHHHHHhC----CCCcEEEEEcc
Q 017777 266 ------KWICHDWSDE-------H-------CVKFLKNCYEAL----PVNGKVIVAES 299 (366)
Q Consensus 266 ------~~~lh~~~~~-------~-------~~~~L~~~~~~L----~pgG~lli~e~ 299 (366)
..++..-++- + -.++|+++.+.+ ||||+|+-..-
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 2233322221 1 258999999999 99999988664
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=82.80 E-value=1.9 Score=38.59 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=49.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
..|..++-.|-.. |+.|+.||++..|+ +.+.+-.+|+-|..-|+++.. +|+ ...|+.-+...
T Consensus 16 ~yEa~vY~aLl~~---g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~-----~g~-P~~y~av~p~~ 77 (247)
T COG1378 16 EYEAKVYLALLCL---GEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVI-----EGR-PKKYRAVPPEE 77 (247)
T ss_pred HHHHHHHHHHHHh---CCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEee-----CCC-CceEEeCCHHH
Confidence 4566667777775 59999999999999 999999999999999999963 332 56777765554
|
|
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=82.73 E-value=2.1 Score=33.58 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 20 ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP-TKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 20 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
.+...++.+.+-|..-+|+... . |+....||.+.++ + ++.-|.+-|+.|+..|++++.. .+
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~---------~----g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~-~~ 73 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLF---------D----GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVV-YP 73 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHh---------c----CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeee-cC
Confidence 3666777777777777665443 3 3889999999998 9 9999999999999999999751 11
Q ss_pred CCCccccccccchhchhhh
Q 017777 99 PDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~ 117 (366)
.- +..-.|++|+.+..+.
T Consensus 74 ~~-PprveY~LT~~G~~L~ 91 (120)
T COG1733 74 EE-PPRVEYRLTEKGRDLL 91 (120)
T ss_pred CC-CceeEEEEhhhHHHHH
Confidence 10 0135688888776555
|
|
| >PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) | Back alignment and domain information |
|---|
Probab=82.57 E-value=1.1 Score=33.90 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=38.8
Q ss_pred HHhhChHHHHhh-cCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 40 AIELDLLEIIAK-AGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 40 a~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+.-.||+.|.. ...+-.+++++|++++++ ++.-++..|+.|...|++--
T Consensus 47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEec
Confidence 445567777776 223457999999999999 99999999999999999864
|
RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A. |
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=82.30 E-value=1.7 Score=35.01 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
|++|++|||-..|+ ..+.+...|.++.+-|-|.+. ..+| +=+|+++.
T Consensus 5 Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv---~q~g--kfRy~iPg 51 (155)
T PF07789_consen 5 GAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRV---NQNG--KFRYCIPG 51 (155)
T ss_pred CcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEe---cCCC--ceEEeCCC
Confidence 79999999999999 999999999999999999975 3444 45777763
|
The region in question is approximately 150 amino acid residues long. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=82.09 E-value=1.6 Score=40.10 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=37.1
Q ss_pred CCeEEEEeCCccH-HHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEc----cCCCCC--C-CC-CEE
Q 017777 202 LNSVVDVGGGIGA-TLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGG----DMFVSV--P-KG-DAI 263 (366)
Q Consensus 202 ~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----D~~~~~--~-~~-D~i 263 (366)
..++||||+|... +..--++ ..+.++++.|+ +..++.|++. .+|+++.. +++... + +. |+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~-~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAK-LYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHH-HH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhh-hcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 5789999999764 4443333 34899999997 7777766542 56777654 344422 1 22 888
Q ss_pred Eecccccc
Q 017777 264 FIKWICHD 271 (366)
Q Consensus 264 ~~~~~lh~ 271 (366)
+|+--+|.
T Consensus 182 mCNPPFy~ 189 (299)
T PF05971_consen 182 MCNPPFYS 189 (299)
T ss_dssp EE-----S
T ss_pred ecCCcccc
Confidence 99888886
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=81.82 E-value=2.3 Score=36.14 Aligned_cols=66 Identities=17% Similarity=-0.017 Sum_probs=48.4
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++..|... ++.|..+||+.+.+ +..-+.++++-|+..|+|.+.. .+.|.. .-...+|+.+..+.
T Consensus 48 ~~iL~~L~~~---~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~-~~~DrR-~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHL---KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK-KEDDKR-NTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhC---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 4567777765 48999999999999 8889999999999999999742 122211 12356776666555
|
|
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=81.58 E-value=1.9 Score=33.25 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=51.0
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
-+..++.++..|...+ +.+..+||+.+++ ++..+.++++-|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 20 lt~~q~~~L~~l~~~~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~-~~~DrR-~~~l~lT~~G~~~~ 90 (126)
T COG1846 20 LTPPQYQVLLALYEAG---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLR-DPEDRR-AVLVRLTEKGRELL 90 (126)
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Cccccc-eeeEEECccHHHHH
Confidence 3456677777777752 4444999999999 9999999999999999999752 111111 12567777776555
Q ss_pred c
Q 017777 118 K 118 (366)
Q Consensus 118 ~ 118 (366)
.
T Consensus 91 ~ 91 (126)
T COG1846 91 E 91 (126)
T ss_pred H
Confidence 3
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.38 E-value=1.4 Score=37.98 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+.|++|+|+++|+ +..-.||.|.+|++.|+++..
T Consensus 172 ~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 172 QELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred CccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 59999999999999 999999999999999999864
|
|
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=81.31 E-value=3.4 Score=29.58 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.|+..++||+.++. ++--++.-|..|.++|+|+.
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~ 55 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVES 55 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccC
Confidence 59999999999999 88899999999999999984
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.28 E-value=17 Score=30.96 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=71.3
Q ss_pred CCCeEEEEeCCccHHHHHHH----HhCCCCeEEEecc--hhHHhhCCCCCCceEEEccCCCCC--------CC-C-CEEE
Q 017777 201 GLNSVVDVGGGIGATLNMII----SKYPSIKGINFDL--PHVIQDAPAFPGVEHVGGDMFVSV--------PK-G-DAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~----~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~D~~~~~--------~~-~-D~i~ 264 (366)
++..|.++|.-.|..+...+ ......+++++|+ -..-..+++.++|.|+.++-.+|. .. . -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 47899999988887555433 3334467777775 211123444689999999977631 11 2 5666
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPD 306 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~ 306 (366)
+-..-|++ +.....|+-...+|.-|-++++-|...++-+.
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG 188 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCCC
Confidence 66666653 45567788888999999999999988876543
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=81.06 E-value=1.9 Score=42.18 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=49.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCC--CCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLP--TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|+..|.+ ++++..||++.++ + ++..+.+.|+.|...|+|+... +.|+ .-.|++|+.+..++
T Consensus 373 r~~IL~~L~~----~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~---~~g~-~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 373 KLEILKILSE----REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAY---RKGR-RVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHHhh----CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEee---cCCC-cEEEEECcHHHHHH
Confidence 4557777876 4899999999998 7 8889999999999999998521 2232 34688988776544
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=81.02 E-value=2.9 Score=33.07 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCce
Q 017777 278 VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNT 357 (366)
Q Consensus 278 ~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 357 (366)
..+++++++.++|||.+..... ...+++.|.++||.+.+....+...
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys~---------------------------------a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYSS---------------------------------AGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES-----------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhCCCcEEEEeec---------------------------------hHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 3689999999999998865211 2346788999999988777777777
Q ss_pred eEEEEEec
Q 017777 358 YIMEFLKS 365 (366)
Q Consensus 358 ~vie~~k~ 365 (366)
-++.+.|+
T Consensus 117 ~~~~a~~~ 124 (124)
T PF05430_consen 117 EMLRAVKP 124 (124)
T ss_dssp EEEEEEC-
T ss_pred hheEEEcC
Confidence 77777764
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=80.87 E-value=1.8 Score=33.74 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++|++|||+.+.+ +++.++.+|+-|...|+|+..
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~ 52 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQ 52 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeee
Confidence 57899999999999 999999999999999999984
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.7 Score=42.50 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=57.7
Q ss_pred HHhhChHHHHhhcCCCCC-CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 40 AIELDLLEIIAKAGPDAF-MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
+.+..|+..|... ++ .+.++||+.+|+ ++..+-+.+..|.+.|+++...+ +...|.+|..+..++.
T Consensus 3 ~~e~~iL~~l~~~---~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~------~~~~~~LT~eG~~~l~ 69 (492)
T PLN02853 3 MAEEALLGALSNN---EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI------KRETWVLTEEGKKYAA 69 (492)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE------EEEEEEECHHHHHHHH
Confidence 4677788888874 34 799999999999 99999999999999999986421 1588999999998887
Q ss_pred CCCC
Q 017777 119 NEDG 122 (366)
Q Consensus 119 ~~~~ 122 (366)
..+|
T Consensus 70 ~G~P 73 (492)
T PLN02853 70 EGSP 73 (492)
T ss_pred cCCH
Confidence 6554
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.69 E-value=8 Score=34.16 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-----hhHHhhCCCCCCceEEEccCCCCCCC----C--CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-----PHVIQDAPAFPGVEHVGGDMFVSVPK----G--DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~~~----~--D~i~~~ 266 (366)
+....+||-+|+++|.....+.... |.--++.++. -+.+..|++.++|.-+.-|..-|..- + |+||.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 5678999999999999877765543 4444455542 34566777778888777787655431 2 66654
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+-+ | ++.+-+.-++..-||+||.++|.-.
T Consensus 233 Dvaq--p-dq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 233 DVAQ--P-DQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred cCCC--c-hhhhhhhhhhhhhhccCCeEEEEEe
Confidence 2222 2 3445555678889999999888543
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.11 E-value=5.1 Score=35.80 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=60.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCC--CC-CEEEeccccccCChHH
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVP--KG-DAIFIKWICHDWSDEH 276 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~--~~-D~i~~~~~lh~~~~~~ 276 (366)
.++..-+|+|...|+++-.|.+ .+..++.+|...|.+..-..++|+....|-|+-.| .. |-.+|-.|= +
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVk--r~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE------k 281 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVK--RNMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE------K 281 (358)
T ss_pred cCCceeeecccCCCccchhhhh--cceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc------C
Confidence 4567889999999999999998 56789999987776666667899999999988444 33 666665442 2
Q ss_pred HHHHHHHHHHhCCCC
Q 017777 277 CVKFLKNCYEALPVN 291 (366)
Q Consensus 277 ~~~~L~~~~~~L~pg 291 (366)
...+-..+..+|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 234455556666544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 366 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-170 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-163 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 1e-133 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 7e-95 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 1e-83 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 2e-36 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 3e-36 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 6e-33 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 2e-29 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 2e-29 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-29 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 5e-18 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 3e-17 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 2e-14 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 3e-13 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 5e-10 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 1e-06 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 2e-05 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 3e-05 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 3e-04 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 493 bits (1272), Expect = e-176
Identities = 270/368 (73%), Positives = 313/368 (85%), Gaps = 2/368 (0%)
Query: 1 MGSTSS-ETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAG-PDAFM 58
MGST + E QI P SDEEANL AMQL SA+VLPM LK+AIELD+LEI+AK+ P ++
Sbjct: 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYI 60
Query: 59 SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118
SP +IA+QLPT NP+A +LDR+LRLLASYSV+ +LR LP GKVERLYGLAPVCKFLTK
Sbjct: 61 SPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTK 120
Query: 119 NEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFN 178
NEDGV+L+ L+ DKVL+E W+YLKDA+LEGGIPFNKAYGMN FDYHG D R NK+FN
Sbjct: 121 NEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFN 180
Query: 179 NGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ 238
GMSS+STITMKKILE Y GFEGL ++VDVGGG GA +MI++KYPSI INFDLPHVIQ
Sbjct: 181 KGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240
Query: 239 DAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298
DAPAF GVEH+GGDMF VPKGDAIFIKWICHDWSDEHC+K LKNCY ALP +GKVIVAE
Sbjct: 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE 300
Query: 299 SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTY 358
ILP +PD S+A+KVVIH D +MLA+NPGGKERTE+EF+ALA A+GF+GF+V S AFNTY
Sbjct: 301 YILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTY 360
Query: 359 IMEFLKSA 366
+MEFLK+A
Sbjct: 361 VMEFLKTA 368
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 477 bits (1229), Expect = e-170
Identities = 221/365 (60%), Positives = 283/365 (77%), Gaps = 6/365 (1%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
MGST+++ A +DE+A + A+QL S+SVLPM LK+AIEL LLEI+ AG + ++P
Sbjct: 5 MGSTAAD----MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKS-LTP 59
Query: 61 KDIASQLPT-KNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119
++A++LP+ NP+A ++DRILRLLASY+V+ C + DG++ R YG APVCKFLT N
Sbjct: 60 TEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPN 119
Query: 120 EDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNN 179
EDGV+++ L LMNQDKVLMESWYYLKDAVL+GGIPFNKAYGM+AF+YHG D RFN++FN
Sbjct: 120 EDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNE 179
Query: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239
GM +HS I KK+LE Y GFEGL ++VDVGGG+GAT+ I + YP+IKG+NFDLPHVI +
Sbjct: 180 GMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239
Query: 240 APAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299
AP FPGV HVGGDMF VP GD I +KWI HDWSD+HC LKNCY+ALP +GKV++ +
Sbjct: 240 APQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299
Query: 300 ILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYI 359
ILPV P+ + +S+ V HVD IMLAHNPGG+ER E+EF+ALA+ AGF G + N +
Sbjct: 300 ILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWA 359
Query: 360 MEFLK 364
+EF K
Sbjct: 360 IEFTK 364
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 459 bits (1182), Expect = e-163
Identities = 179/373 (47%), Positives = 248/373 (66%), Gaps = 10/373 (2%)
Query: 1 MGSTSSETQI----SPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAG-PD 55
MG++ + + ++ +++ A L AM LT+ V P VL +AI+L+L EIIAKA P
Sbjct: 1 MGNSYITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPG 60
Query: 56 AFMSPKDIASQLP--TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113
AFMSP +IAS+LP T++ D LDR+LRLLASYSVL + R + DG ER+YGL+ V
Sbjct: 61 AFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG 120
Query: 114 KFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGI-PFNKAYGMNAFDYHGKDLR 172
K+L +E L+ L++ W K+AV++ I F +G+ +++ GKD +
Sbjct: 121 KYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKK 180
Query: 173 FNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFD 232
N+IFN M MK++LE Y GFEG++++VDVGGG G L +IISKYP IKGINFD
Sbjct: 181 MNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFD 240
Query: 233 LPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNG 292
LP VI++AP G+EHVGGDMF SVP+GDA+ +K +CH+WSDE C++FL NC++AL NG
Sbjct: 241 LPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNG 300
Query: 293 KVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352
KVI+ E ILP P+TS SK+V +D +M GG+ERTE+++ L+K +GF FQV
Sbjct: 301 KVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVAC 359
Query: 353 SAFNTY-IMEFLK 364
AFN+ +MEF K
Sbjct: 360 RAFNSLGVMEFYK 372
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 417 bits (1074), Expect = e-146
Identities = 103/366 (28%), Positives = 177/366 (48%), Gaps = 20/366 (5%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
M S+ + + P++ +A L + A + M LK A+E+++ II G S
Sbjct: 1 MASSINGRK--PSE--IFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPI--SL 54
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
++ S L + R++R LA + E Y L + L +
Sbjct: 55 SNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIITKE------EESYALTVASELLVRGS 107
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGI-PFNKAYGMNAFDYHGKDLRFNKIFNN 179
D L+ + D L S++ LK + E + F G +D+ K+ +N FN+
Sbjct: 108 DL-CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239
M+S S + + + F+GL S+VDVGGG G T +I +P +K I FD P V+++
Sbjct: 167 AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 226
Query: 240 APAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVN---GKVIV 296
+ +VGGDMF S+P DA+ +K+I H+W+D+ C++ LK C EA+ + GKV +
Sbjct: 227 LSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI 286
Query: 297 AESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFN 356
+ ++ D + +++ + +D M N GKER E+E++ L AGFQ +++
Sbjct: 287 IDMVIDKKKDENQVTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGF 344
Query: 357 TYIMEF 362
++E
Sbjct: 345 LSLIEI 350
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 406 bits (1044), Expect = e-142
Identities = 112/361 (31%), Positives = 171/361 (47%), Gaps = 18/361 (4%)
Query: 15 GSDEE----ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTK 70
GS+E A + + V M LKSA+EL + + I G M+ ++AS L
Sbjct: 1 GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGK--PMTLSELASSLKL- 57
Query: 71 NPDAHTVLDRILRLLASYSVLNCSLRNLPDGKV--ERLYGLAPVCKFLTKNEDGVTLSDL 128
+P +L R LRLL ++ +G E Y L P K L + LS +
Sbjct: 58 HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSI 116
Query: 129 CLMNQDKVLMESWYYLKDAVLEGG--IPFNKAYGMNAFDYHGKDLRFN--KIFNNGMSSH 184
++ W K E F A G + +D+ KD + +F + M+S
Sbjct: 117 VKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASD 176
Query: 185 STITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFP 244
S + + EN + FEGL S+VDVGGG G +I +P +K FD P V+ +
Sbjct: 177 SRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNE 236
Query: 245 GVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPV---NGKVIVAESIL 301
+ VGGDMF S+P DA+ +KW+ HDW+DE +K LKN EA+ +GKVI+ + +
Sbjct: 237 NLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI 296
Query: 302 PVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIME 361
T D +++ + D +ML GKERT+QE+ L AGF +++ + ++E
Sbjct: 297 DETSDDRGLTELQLDYDLVMLTMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIE 355
Query: 362 F 362
Sbjct: 356 V 356
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 398 bits (1026), Expect = e-139
Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 33/364 (9%)
Query: 7 ETQISPAQGSDEEANLLA----MQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKD 62
+ Q P++ + L + + L++A + + + + GP +P +
Sbjct: 5 QRQRPPSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV-DGP---RTPAE 60
Query: 63 IASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDG 122
+A+ T + DA L R+LRLLA V+ S + + L L +
Sbjct: 61 LAAATGT-DADA---LRRVLRLLAVRDVVRES---------DGRFALTDKGAALRSD-SP 106
Query: 123 VTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMS 182
V LM D + + + A+ F +G + Y D ++ GM
Sbjct: 107 VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGME 166
Query: 183 SHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVI----Q 238
+ S + F +V DVGGG G L ++ ++P ++G+ D V+
Sbjct: 167 TVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRL 225
Query: 239 DAPAFPG-VEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297
DAP G + V GD VP D +K I H+W DE V+ L NC +P +G+V+V
Sbjct: 226 DAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVI 285
Query: 298 ESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNT 357
++++P D + +D +MLA G+ERT E L AAG + +VV ++
Sbjct: 286 DAVVPEGNDAHQSK----EMDFMMLAA-RTGQERTAAELEPLFTAAGLRLDRVVGTSSVM 340
Query: 358 YIME 361
I
Sbjct: 341 SIAV 344
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 398 bits (1025), Expect = e-139
Identities = 83/371 (22%), Positives = 157/371 (42%), Gaps = 32/371 (8%)
Query: 4 TSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDI 63
T +T +P + A + + + A+EL + E++ + GP + +
Sbjct: 22 TVEQTPENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GP---RTATAL 77
Query: 64 ASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGV 123
A + L R+LRLLA+ V + + L+ + L +
Sbjct: 78 AEATGA-HEQT---LRRLLRLLATVGVFDDL-------GHDDLFAQNALSAVLLPD-PAS 125
Query: 124 TLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSS 183
++ +W L +V G F+ A G + + +D + ++FN M S
Sbjct: 126 PVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGS 185
Query: 184 HSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF 243
S ++ Y F G + VD+GGG G+ + ++ +P ++G + P V ++A
Sbjct: 186 VSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEAREL 244
Query: 244 -------PGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295
E + GD F ++P G D IK + HDW D+ V+ L+ A+ + +++
Sbjct: 245 LTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLL 304
Query: 296 VAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS-SA 354
V ++++ P S + VD ++L GG ER+E EF AL + +G + + + A
Sbjct: 305 VIDNLIDERPAAS-----TLFVDLLLLV-LVGGAERSESEFAALLEKSGLRVERSLPCGA 358
Query: 355 FNTYIMEFLKS 365
I+E ++
Sbjct: 359 GPVRIVEIRRA 369
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 391 bits (1007), Expect = e-136
Identities = 86/379 (22%), Positives = 144/379 (37%), Gaps = 35/379 (9%)
Query: 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSP 60
M S+S + P +D++ ++L ++ V PM L+ A L L++ + AG +
Sbjct: 1 MSSSSPGEPLEP---TDQDLDVL-LKNLGNLVTPMALRVAATLRLVDHLL-AGA---DTL 52
Query: 61 KDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
+A + T +P A L R++R L VL K R + L
Sbjct: 53 AGLADRTDT-HPQA---LSRLVRHLTVVGVLEG------GEKQGRPLRPTRLGMLLADGH 102
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
+ L L ++ L D V G + YG ++ D+ F+
Sbjct: 103 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDAL 162
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS + + + Y + + V+DVGGG G L I + P ++G +L + A
Sbjct: 163 MSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERA 221
Query: 241 PAF-------PGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNG 292
V GD F +P D + + ++ +WSDE + L+ C AL G
Sbjct: 222 RRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG 281
Query: 293 KVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV- 351
+++V + +D ML GG+ RT E LA +AG
Sbjct: 282 RLLVLDRADVEGDGAD--RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERT 338
Query: 352 ----SSAFNTYIMEFLKSA 366
+ F+ I+EF +
Sbjct: 339 SGSTTLPFDFSILEFTAVS 357
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-133
Identities = 77/358 (21%), Positives = 140/358 (39%), Gaps = 29/358 (8%)
Query: 2 GSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPK 61
GS +S + + A + L + + PMV+++A L L++ I AG + K
Sbjct: 1 GSPNSTAEPTVAARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL-AGA---RTVK 56
Query: 62 DIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNED 121
+A++ T P+A L R++R L + +L + V + L +
Sbjct: 57 ALAARTDT-RPEA---LLRLIRHLVAIGLLEED--------APGEFVPTEVGELLADDHP 104
Query: 122 GVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGM 181
+ L S+ L DA+ G + YG ++ F++ +
Sbjct: 105 AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLL 164
Query: 182 SSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAP 241
+ + Y + + V+DVGGG G I + P + ++ + A
Sbjct: 165 ACDQDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTAR 223
Query: 242 AF-------PGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGK 293
++ V+ V GD F +P+ DAI + ++ +W D V+ L C EAL G+
Sbjct: 224 SYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR 283
Query: 294 VIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351
+++ E + +D ML GG RT +++ LA +AG +V
Sbjct: 284 ILIHERDDLHENSFNEQFT---ELDLRMLV-FLGGALRTREKWDGLAASAGLVVEEVR 337
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 380 bits (978), Expect = e-132
Identities = 85/353 (24%), Positives = 140/353 (39%), Gaps = 34/353 (9%)
Query: 18 EEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTV 77
+ A + ++ + PM ++ A L + + IA AG + +IAS + D+
Sbjct: 3 KRAAHIGLRALADLATPMAVRVAATLRVADHIA-AGH---RTAAEIASAAGA-HADS--- 54
Query: 78 LDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVL 137
LDR+LR L + + DG + +YGL + L + L + +
Sbjct: 55 LDRLLRHLVAVGLFTR------DG--QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRG 106
Query: 138 MESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYK 197
+ L ++ G + YG + ++ G D + F+ MS H + I Y
Sbjct: 107 DLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD 166
Query: 198 GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVG 250
+ L VVDVGGG G L+ +++ + + G DL A + V
Sbjct: 167 -WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVV 225
Query: 251 GDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL 309
G F +P G + + HDW D V L+ C EA G V+V E++ +
Sbjct: 226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTG 285
Query: 310 ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEF 362
+D ML + GGKER+ E LA AG ++ + I+E
Sbjct: 286 -------MDLRMLTYF-GGKERSLAELGELAAQAGLAVRAAHPISYVS-IVEM 329
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 376 bits (968), Expect = e-130
Identities = 78/358 (21%), Positives = 140/358 (39%), Gaps = 35/358 (9%)
Query: 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAH 75
S+ A +Q+ + + A L L ++I G S + +A+ + + + +
Sbjct: 4 SNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GI---DSDETLAAAVGS-DAER- 57
Query: 76 TVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDK 135
+ R++RLL ++ + Y P L E + D+ L ++
Sbjct: 58 --IHRLMRLLVAFEIFQGD--------TRDGYANTPTSHLLRDVEG--SFRDMVLFYGEE 105
Query: 136 VLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILEN 195
+W +A+L G F A+G + + Y + + F M + + + +I
Sbjct: 106 -FHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKASN-LAFHEIPRL 163
Query: 196 YKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEH 248
F G S VDVGGG G I+ PS +G+ D + A V
Sbjct: 164 L-DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSL 221
Query: 249 VGGDMFVSVP-KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDT 307
VGGDM VP GD + I D + ++ L NC EA+ +G+V+V E + + +
Sbjct: 222 VGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS 281
Query: 308 SLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365
++ D + G+ RT +E L GF ++V T ++ ++
Sbjct: 282 PMSV----LWDVHLFM-ACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAARA 334
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 319 bits (819), Expect = e-108
Identities = 62/336 (18%), Positives = 114/336 (33%), Gaps = 34/336 (10%)
Query: 25 MQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRL 84
+A +K+A+EL++ I++ G S + +A + T + + +
Sbjct: 11 FNTVNAYQRSAAIKAAVELNVFTAISQ-GI---ESSQSLAQKCQT-SERG---MRMLCDY 62
Query: 85 LASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYL 144
L + K Y L + + D ++ + L
Sbjct: 63 LVIIGFMT---------KQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDL 113
Query: 145 KDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNS 204
AVL+GG + + H ++F K + M++ + + + + N E L
Sbjct: 114 TAAVLKGGTAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIAQLV--NENKIEPL-K 168
Query: 205 VVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPG-------VEHVGGDMFVSV 257
V+D+ G + P+ + D V++ A + G F
Sbjct: 169 VLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVD 228
Query: 258 --PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVI 315
D + + H + C + L+ AL V GKVIV + I T +
Sbjct: 229 YGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAA-- 286
Query: 316 HVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351
+MLA P G T E+ ++ AGF Q+
Sbjct: 287 -FSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = e-107
Identities = 61/384 (15%), Positives = 134/384 (34%), Gaps = 46/384 (11%)
Query: 1 MGSTSSETQISPAQGSDEE----------ANLLAMQL-TSASVLPMVLKSAIELDLLEII 49
MGS+ S A +L + +K+AIELDL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHM 60
Query: 50 AKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGL 109
A+ GP +A+ + P L+ +L L V+N + + L
Sbjct: 61 AE-GP---KDLATLAADTGS-VPPR---LEMLLETLRQMRVINLE---------DGKWSL 103
Query: 110 APVCK-FLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHG 168
+ L + L + +Y + G F Y
Sbjct: 104 TEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKNFK-----GQVPYPP 158
Query: 169 KDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKG 228
N F S++ ++ +LE K +G+ ++DVGGGIG ++ +P +
Sbjct: 159 VTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDS 217
Query: 229 INFDLPHVIQDAPAFPG-------VEHVGGDMFV-SVPKGDAIFIKWICHDWSDEHCVKF 280
+LP I + + D++ S P+ DA+ I + +++
Sbjct: 218 TILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIM 277
Query: 281 LKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340
K ++A+ G++++ + ++ + + + M + + ++ +
Sbjct: 278 CKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS--VLGFKEQARYKEIL 335
Query: 341 KAAGFQGFQVVSSAFNTYIMEFLK 364
++ G++ +V ++ +++ +K
Sbjct: 336 ESLGYKDVTMV-RKYDHLLVQAVK 358
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 296 bits (761), Expect = 4e-99
Identities = 56/358 (15%), Positives = 128/358 (35%), Gaps = 36/358 (10%)
Query: 9 QISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP 68
+ + Q + EA LA ++ V+ V + ++ + ++++ + ++I+ +
Sbjct: 4 RYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKRE--GYTLQEISGRTG 61
Query: 69 TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDL 128
A +L + + E Y LA FL ++ ++ +
Sbjct: 62 L-TRYA---AQVLLEASLTIGTILLE---------EDRYVLAKAGWFLLNDK----MARV 104
Query: 129 CLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGK---DLRFNKIFNNGMSSHS 185
+ V + ++L++A+L G K +G Y G + K + +S
Sbjct: 105 NMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYS 164
Query: 186 TITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPG 245
+ K LE ++D+GG G + ++ DLP ++
Sbjct: 165 DQSFGKALEIV-FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTA 223
Query: 246 -------VEHVGGDMF---VSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKV 294
+ G ++ V P G DA+++ +S+E + L +++ + KV
Sbjct: 224 GLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKV 283
Query: 295 IVAESILPVTP-DTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351
+ E++ +T+ I + +A N K + + AG + ++
Sbjct: 284 YIMETLWDRQRYETASYCLTQISLYFTAMA-NGNSKMFHSDDLIRCIENAGLEVEEIQ 340
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 4e-95
Identities = 50/359 (13%), Positives = 112/359 (31%), Gaps = 43/359 (11%)
Query: 1 MGSTSSETQISPAQGSDEEANLLA-MQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMS 59
M +++ ET + +++ ++L+ +L A+ L ++ +
Sbjct: 4 MNASAVETIYESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG-----RT 58
Query: 60 PKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC-KFLTK 118
P ++A+ +L LA+ +L K + + ++LT
Sbjct: 59 PAEVAASFGM-VEGK---AAILLHALAALGLLT---------KEGDAFRNTALTERYLTT 105
Query: 119 NEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFN 178
+ + ++W L + + K D R FN
Sbjct: 106 TSAD-YIGPIVEHQYL--QWDNWPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFN 157
Query: 179 NGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ 238
+ M S + + E F +V+D+ GG G L ++ ++P + G +DLP
Sbjct: 158 DAMVRLSQPMVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRD 216
Query: 239 DAPAFPG-------VEHVGGDMFVSVP----KGDAIFIKWICHDWSDEHCVKFLKNCYEA 287
A VE ++ + D + + H + + + +
Sbjct: 217 AARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGL 276
Query: 288 LPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346
+ G +++ + T S M+ + G+ + + AG
Sbjct: 277 VKPGGALLILTMTMNDDRVTPALSAD---FSLHMMVNTNHGELHPTPWIAGVVRDAGLA 332
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-10
Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 26/179 (14%)
Query: 178 NNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDLPHV 236
++ + S +++ L G + +D G GIG ++ + ++
Sbjct: 56 SSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT-EDF 114
Query: 237 IQDAPAFPG------VEHVGGDMFVSVPKG---DAIFIKWICHDWSDEHCVKFLKNCYEA 287
+ A + G + + P+ D I+I+W+ +D+H +FL+ C +
Sbjct: 115 LVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGS 174
Query: 288 LPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346
L NG +++ ++ + + ++L R R + +AG
Sbjct: 175 LRPNGIIVIKDN---------------MAQEGVILDDVDSSVCRDLDVVRRIICSAGLS 218
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-08
Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 21/174 (12%)
Query: 180 GMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239
I + G + +D G GIG +++K + + + H++++
Sbjct: 72 DHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEE 131
Query: 240 A----PAFPGVEHVGGDMF-VSVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNG 292
A P + + M ++P D I I+W +D VKF K+C +AL NG
Sbjct: 132 AKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNG 191
Query: 293 KVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346
+ E+ D ++ R++ ++ L +G +
Sbjct: 192 YIFFKEN--------------CSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVR 231
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 2e-07
Identities = 38/283 (13%), Positives = 93/283 (32%), Gaps = 79/283 (27%)
Query: 18 EEA---NLLAMQLTSASVLPMV-------------LKSAIE--LDLLEIIAKAGPD---- 55
E N + + + S+ + L + IE L++LE P
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------PAEYRK 373
Query: 56 AFMS----PKDIASQLPTK-------NPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVE 104
F P +PT + V+ ++ L YS++ + + +
Sbjct: 374 MFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMV-VVNKLHKYSLVE---KQPKESTI- 426
Query: 105 RLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVL--MESWYYLKDAVLEGGIPFNKAYGMN 162
+ + + K E+ L +++ + +S + L+ + + +
Sbjct: 427 SIPSIY--LELKVKLENEYALHRS-IVDHYNIPKTFDSDDLIPPY-LDQYFYSHIGHHLK 482
Query: 163 AFDYHGKDLRFNKIF-----------NNGMSSHSTITMKKIL---ENYKGF--------- 199
++ + F +F ++ + +++ ++ L + YK +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPH--VIQDA 240
+N+++D I N+I SKY + I + ++A
Sbjct: 543 RLVNAILDFLPKIEE--NLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 5e-07
Identities = 44/368 (11%), Positives = 105/368 (28%), Gaps = 102/368 (27%)
Query: 20 ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLD 79
+ L+ T+ L + ++ ++ K P+D+ ++ T NP +++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIA 334
Query: 80 RILRLLAS----YSVLNC---------SLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLS 126
+R + + +NC SL L + +++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------------------D 376
Query: 127 DLCLMNQD-----KVLMESWYYLKDAVLEGGIPFNKAYGM-------NAFDYHGKDLRFN 174
L + +L W+ + + + + Y + + L
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 175 KIFNNGMSSHSTITMKKILENY---KGFEGLNSVVDVGGG-----IG---ATLNMIISKY 223
N + H + I+++Y K F+ + + IG + +
Sbjct: 437 VKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERM 490
Query: 224 PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAI-----FIKWIC-HDWSDEHC 277
+ + D ++ + H S + + + +IC +D E
Sbjct: 491 TLFRMVFLDF-RFLEQK-----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 278 V----KFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTE 333
V FL E L + K + D + +A + E
Sbjct: 545 VNAILDFLPKIEENL-ICSK----------------------YTDLLRIALMAEDEAIFE 581
Query: 334 QEFRALAK 341
+ + + +
Sbjct: 582 EAHKQVQR 589
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 30/216 (13%)
Query: 172 RFNKI------FNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS 225
+F+ + + ++D+G G G ++ KYP
Sbjct: 9 KFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE 68
Query: 226 IKGINFDL-PHVIQDA----PAFPGVEHVGGDMFVSVPKG--DAIFIKWICHDWSDEHCV 278
D+ +++ A V+++ D + D + H DE
Sbjct: 69 ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKK 128
Query: 279 KFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKER------- 331
+ K Y L +G I A+ V +T+ + + + ++ +E
Sbjct: 129 ELYKRSYSILKESGIFINAD---LVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYER 185
Query: 332 -------TEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
+ K AGF+ + + +M
Sbjct: 186 SKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVM 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.82 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.78 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.76 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.74 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.74 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.73 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.73 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.73 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.72 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.71 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.7 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.7 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.69 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.69 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.69 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.69 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.68 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.68 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.68 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.68 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.68 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.67 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.67 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.67 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.66 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.66 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.66 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.65 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.65 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.65 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.64 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.64 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.64 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.63 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.63 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.62 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.62 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.61 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.61 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.61 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.61 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.6 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.6 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.59 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.59 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.59 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.57 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.54 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.53 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.51 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.51 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.51 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.51 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.5 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.5 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.49 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.49 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.48 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.48 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.47 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.46 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.45 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.44 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.44 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.44 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.43 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.43 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.43 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.43 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.43 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.41 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.39 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.38 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.36 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.36 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.34 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.34 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.34 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.34 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.33 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.33 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.32 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.31 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.31 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.31 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.3 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.3 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.3 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.3 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.3 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.29 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.28 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.28 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.27 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.27 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.27 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.26 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.26 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.26 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.25 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.24 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.24 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.23 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.22 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.22 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.22 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.22 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.21 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.21 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.2 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.2 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.2 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.2 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.19 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.19 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.18 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.17 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.17 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.17 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.16 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.15 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.14 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.14 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.13 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.12 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.12 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.12 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.11 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.11 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.11 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.11 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.11 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.07 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.07 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.05 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.05 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.05 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.05 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.04 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.04 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.04 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.04 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.04 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.04 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.03 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.03 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.03 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.02 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.01 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.01 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.0 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.0 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.0 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.0 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.99 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.99 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.99 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.97 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.97 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.96 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.95 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.95 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.94 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.94 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.93 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.93 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.92 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.91 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.9 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.89 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.88 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.88 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.87 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.87 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.87 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.86 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.86 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.85 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.85 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.84 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.84 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.84 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.83 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.83 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.81 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.81 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.8 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.8 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.79 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.79 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.76 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.76 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.74 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.74 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.73 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.72 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.71 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.7 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.69 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.67 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.67 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.67 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.65 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.64 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.59 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.58 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.49 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.49 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.47 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.37 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.37 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.37 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.36 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.36 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.36 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.33 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.33 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.33 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.33 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.31 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.28 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.28 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.28 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.26 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.26 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.24 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.24 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.21 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.18 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.17 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.16 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.15 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.14 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.13 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.11 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.1 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.06 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.95 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.91 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.84 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.82 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.79 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.76 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.73 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.72 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.7 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.65 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.61 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.54 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.53 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.44 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.43 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.39 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.34 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.29 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.23 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.17 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.17 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.16 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.11 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 96.99 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.93 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.89 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 96.79 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 96.74 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.65 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.56 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.51 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 96.49 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 96.48 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.36 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.3 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 96.18 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.17 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.14 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 95.92 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 95.89 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 95.81 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 95.77 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.75 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 95.67 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 95.62 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 95.58 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 95.57 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 95.55 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 95.55 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 95.49 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 95.47 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 95.46 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 95.37 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.32 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 95.31 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.25 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.24 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.12 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.08 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 95.06 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 95.01 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 94.9 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 94.89 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 94.83 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 94.69 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 94.63 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 94.58 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 94.57 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 94.5 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 94.47 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.44 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 94.44 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 94.41 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 94.4 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 94.39 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 94.37 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.33 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 94.3 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 94.24 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 94.21 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.17 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 94.1 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 94.1 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 94.06 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 94.04 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 93.89 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 93.83 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 93.83 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 93.77 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 93.7 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 93.61 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 93.6 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 93.59 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 93.57 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 93.53 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.53 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 93.47 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 93.46 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 93.34 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 93.34 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 93.2 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 93.14 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 93.03 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 93.02 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 93.02 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 92.97 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 92.94 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 92.93 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 92.88 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 92.82 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 92.73 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 92.7 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 92.7 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 92.63 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 92.62 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 92.6 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 92.6 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 92.55 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 92.46 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 92.44 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 92.37 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 92.33 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 92.32 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 92.24 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 92.21 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 92.14 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 92.13 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 92.01 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 91.96 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 91.89 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 91.77 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 91.74 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 91.7 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 91.55 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 91.54 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 91.44 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 91.38 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 91.25 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 91.06 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 91.0 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 90.95 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 90.58 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 90.55 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 90.32 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 90.22 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 90.22 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 90.21 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 89.97 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 89.87 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 89.86 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 89.81 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 89.75 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 89.67 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 89.63 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 89.53 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 89.37 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 89.33 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 89.17 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 89.09 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 88.64 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 88.56 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 88.5 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 88.48 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 88.3 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 87.83 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 87.76 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 87.74 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 86.82 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 86.81 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 86.73 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 86.7 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 86.61 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 86.49 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 86.44 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 86.35 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 85.31 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 85.06 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 84.8 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 84.39 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.3 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 84.17 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 84.12 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 83.68 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 83.66 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 83.52 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 83.33 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 82.59 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 82.07 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 82.03 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 81.28 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 80.71 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 80.61 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 80.28 |
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-55 Score=415.26 Aligned_cols=366 Identities=73% Similarity=1.208 Sum_probs=306.1
Q ss_pred CCCCCCccc-cCCCCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhc-CCCCCCCHHHHHhhCCCCCCCCcchH
Q 017777 1 MGSTSSETQ-ISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKA-GPDAFMSPKDIASQLPTKNPDAHTVL 78 (366)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l 78 (366)
|||++.+.. ..|...++++.+..+++++.+++.+++|++|++||||+.|.+. ++++|+|++|||++++..+|.+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l 80 (368)
T 3reo_A 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVML 80 (368)
T ss_dssp ----------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHH
T ss_pred CCCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhH
Confidence 788765532 2346668889999999999999999999999999999999984 33467999999999983233234599
Q ss_pred HHHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhh
Q 017777 79 DRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKA 158 (366)
Q Consensus 79 ~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~ 158 (366)
+||||+|++.|+++++....++|..+++|++|+.++.|+.+.++.++++++.+...+.++..|.+|.+++++|.++|+..
T Consensus 81 ~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~ 160 (368)
T 3reo_A 81 DRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKA 160 (368)
T ss_dssp HHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHH
Confidence 99999999999999731000122113789999999999887777889999888777788899999999999999999999
Q ss_pred hCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHh
Q 017777 159 YGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ 238 (366)
Q Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 238 (366)
+|.++|+|+.++++..+.|.++|........+.+++.++++.+..+|||||||+|.++..+++++|+++++++|+|.+++
T Consensus 161 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 240 (368)
T 3reo_A 161 YGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240 (368)
T ss_dssp SSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT
T ss_pred hCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHH
Confidence 99999999999999999999999998887778888888657788999999999999999999999999999999999999
Q ss_pred hCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc
Q 017777 239 DAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD 318 (366)
Q Consensus 239 ~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~ 318 (366)
.+++.++++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............++
T Consensus 241 ~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d 320 (368)
T 3reo_A 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTD 320 (368)
T ss_dssp TCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHH
T ss_pred hhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhh
Confidence 99988999999999998888779999999999999999999999999999999999999998876544333333445677
Q ss_pred hhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEecC
Q 017777 319 CIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKSA 366 (366)
Q Consensus 319 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~~ 366 (366)
+.|+....+++.||.++|.++|+++||+.+++.+..+..++||++|+|
T Consensus 321 ~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k~~ 368 (368)
T 3reo_A 321 ALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLKTA 368 (368)
T ss_dssp HHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEECCC
T ss_pred HHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEeCC
Confidence 777764358999999999999999999999999999999999999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-55 Score=412.10 Aligned_cols=359 Identities=62% Similarity=1.093 Sum_probs=305.4
Q ss_pred CCCCCCccccCCCCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCC-CCCCCcchHH
Q 017777 1 MGSTSSETQISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPT-KNPDAHTVLD 79 (366)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~ 79 (366)
|||+... |.+.++++++..+++++++++.+++|++|++||||+.|.+.+ ++|+|++|||+++++ ++|..+..++
T Consensus 5 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~ 79 (364)
T 3p9c_A 5 MGSTAAD----MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVD 79 (364)
T ss_dssp ------------CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHH
T ss_pred CCCCCCC----ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHH
Confidence 5664433 577788899999999999999999999999999999999842 249999999999995 3222344999
Q ss_pred HHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhh
Q 017777 80 RILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAY 159 (366)
Q Consensus 80 ~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~ 159 (366)
||||+|++.|+|+++.+...+|..+++|++|+.++.|+.+.++.++++++.+...+.++..|.+|.+++++|.++|+..+
T Consensus 80 rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~ 159 (364)
T 3p9c_A 80 RILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY 159 (364)
T ss_dssp HHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhc
Confidence 99999999999997410001221137899999999988877677899998877777788999999999999999999999
Q ss_pred CCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhh
Q 017777 160 GMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD 239 (366)
Q Consensus 160 g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 239 (366)
|.++|+|+.++|+..+.|.++|........+.+++.++++.+..+|||||||+|.++..+++++|+++++++|+|.+++.
T Consensus 160 g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 239 (364)
T 3p9c_A 160 GMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239 (364)
T ss_dssp SSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHh
Confidence 99999999999999999999999988877888888887677889999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcch
Q 017777 240 APAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDC 319 (366)
Q Consensus 240 a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~ 319 (366)
+++.++++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++
T Consensus 240 a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~ 319 (364)
T 3p9c_A 240 APQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDM 319 (364)
T ss_dssp CCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHH
T ss_pred hhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHH
Confidence 99889999999999988877799999999999999999999999999999999999999988765443322233456788
Q ss_pred hhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 320 IMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 320 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.|+....+++.||.++|.++|+++||+.+++.+..+..++||++|
T Consensus 320 ~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 320 IMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 777543589999999999999999999999999999999999997
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-55 Score=410.25 Aligned_cols=332 Identities=21% Similarity=0.338 Sum_probs=295.2
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccc
Q 017777 17 DEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLR 96 (366)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 96 (366)
+++.++.|.+++.||+.+++|++|++|||||.|.+.+ +|+|++|||+++++ +++.++|||++|++.|++++..
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~- 77 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVET- 77 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEec-
Confidence 3478889999999999999999999999999998854 69999999999999 9999999999999999998642
Q ss_pred cCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhC---CCchhhcccCchH
Q 017777 97 NLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYG---MNAFDYHGKDLRF 173 (366)
Q Consensus 97 ~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g---~~~~~~~~~~~~~ 173 (366)
++| .++|++|+.++.++...++.+++.++.+. .+..+..|.+|.++++++.+++...+| ..+|+++.++++.
T Consensus 78 --~~~--~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (353)
T 4a6d_A 78 --RGG--KAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGE 152 (353)
T ss_dssp --ETT--EEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHH
T ss_pred --cCc--cceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHH
Confidence 122 56899999999877777778899888775 355678999999999999999998887 3578888999999
Q ss_pred HHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC------CCCce
Q 017777 174 NKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA------FPGVE 247 (366)
Q Consensus 174 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~v~ 247 (366)
...|.++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+
T Consensus 153 ~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~ 231 (353)
T 4a6d_A 153 RLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQID 231 (353)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCcee
Confidence 999999999988888888999888 88899999999999999999999999999999999999887653 27899
Q ss_pred EEEccCCC-CCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC
Q 017777 248 HVGGDMFV-SVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 248 ~~~~D~~~-~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
++.+|+++ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+|+|+|.+.+++...+ .....+++.|+...
T Consensus 232 ~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~- 307 (353)
T 4a6d_A 232 FQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT- 307 (353)
T ss_dssp EEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-
T ss_pred eecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-
Confidence 99999998 55666999999999999999999999999999999999999999987764443 23456788888875
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+|++||.+||+++|++|||+.+++++.++..++|+++|.
T Consensus 308 ~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 308 EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARKG 346 (353)
T ss_dssp SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEECC
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEec
Confidence 899999999999999999999999999999999999996
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=367.28 Aligned_cols=325 Identities=25% Similarity=0.362 Sum_probs=287.2
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
...++...+++++.+++.+++|++++++|||+.|.+ +|+|++|||+++++ +++.++|||++|++.|+|++.
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec-
Confidence 345778889999999999999999999999999987 59999999999999 999999999999999999962
Q ss_pred ccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHH
Q 017777 96 RNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNK 175 (366)
Q Consensus 96 ~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 175 (366)
+++|++|+.++.|..+ ++.++++++.+...+..++.|.+|.+.+++|.++|+..+|.++|+|+.++|+...
T Consensus 89 --------~~~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~ 159 (348)
T 3lst_A 89 --------DGRFALTDKGAALRSD-SPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEA 159 (348)
T ss_dssp --------TTEEEECTTTGGGSTT-SSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHH
T ss_pred --------CCEEecCHHHHHHhcC-CCccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHH
Confidence 5899999999988654 3467888887766776789999999999999999999999889999999999999
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-----CCCceEEE
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-----FPGVEHVG 250 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~ 250 (366)
.|.++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .++++++.
T Consensus 160 ~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~ 238 (348)
T 3lst_A 160 LYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVE 238 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEE
T ss_pred HHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEe
Confidence 9999999988878888999888 88899999999999999999999999999999999888763221 15799999
Q ss_pred ccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 251 GDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 251 ~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
+|+++++|..|+|++.++||+|+++++..+|++++++|||||+|+|.|...++.... .....+++.|+.. .+++.
T Consensus 239 ~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~ 313 (348)
T 3lst_A 239 GDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQE 313 (348)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCC
T ss_pred cCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcC
Confidence 999887775599999999999999999999999999999999999999987765322 2234567777765 48999
Q ss_pred CCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
+|.++|.++|+++||+++++++..+..++||++|
T Consensus 314 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 314 RTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred CCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999999999999778899999987
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=368.51 Aligned_cols=323 Identities=23% Similarity=0.421 Sum_probs=287.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 19 EANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
....++++++.+++.+++|++++++|||+.|.+ +|+|++|||+++++ +++.++|||++|++.|+++++
T Consensus 37 ~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~---- 104 (369)
T 3gwz_A 37 AAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL---- 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe----
Confidence 667789999999999999999999999999986 59999999999999 999999999999999999963
Q ss_pred CCCccccc-cccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHH
Q 017777 99 PDGKVERL-YGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIF 177 (366)
Q Consensus 99 ~~g~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 177 (366)
. +++ |++|+.++.|..+ ++.++.+++.+...+..+..|.+|.+.++++.++|...+|.++|+|+.++++....|
T Consensus 105 ~----~~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f 179 (369)
T 3gwz_A 105 G----HDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELF 179 (369)
T ss_dssp S----STTEEECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred C----CCceEecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHH
Confidence 2 577 9999999987544 446788888877666677899999999999999999999988999999999999999
Q ss_pred HHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEE
Q 017777 178 NNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVG 250 (366)
Q Consensus 178 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~ 250 (366)
..+|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++ .++|+++.
T Consensus 180 ~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~ 258 (369)
T 3gwz_A 180 NRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILP 258 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEec
Confidence 99999888877888888887 88889999999999999999999999999999999888887764 26899999
Q ss_pred ccCCCCCCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 251 GDMFVSVPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 251 ~D~~~~~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
+|+++++|. .|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.... . ...+++.|+.. .+++
T Consensus 259 ~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~-~~g~ 332 (369)
T 3gwz_A 259 GDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVL-VGGA 332 (369)
T ss_dssp CCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHH-HSCC
T ss_pred cCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhh-cCCc
Confidence 999987774 499999999999999999999999999999999999999988765322 1 34667777765 4899
Q ss_pred cCCHHHHHHHHHHcCCceeEEEE-CCCceeEEEEEec
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVS-SAFNTYIMEFLKS 365 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~k~ 365 (366)
.+|.++|.++|+++||+++++++ ..+..++||++|.
T Consensus 333 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~a 369 (369)
T 3gwz_A 333 ERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRRA 369 (369)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEEC
T ss_pred cCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEeC
Confidence 99999999999999999999999 6788999999974
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=361.88 Aligned_cols=343 Identities=32% Similarity=0.490 Sum_probs=288.6
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
+-.++...+++++.+++.+++|++++++|||+.|.+.+ +|+|++|||+++++ +|.+++.++|||++|++.|+|++..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence 34466678899999999999999999999999999742 49999999999999 3445889999999999999998630
Q ss_pred c-cCC-CCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcC--CchhHhhhCCCchhhcccCc
Q 017777 96 R-NLP-DGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEG--GIPFNKAYGMNAFDYHGKDL 171 (366)
Q Consensus 96 ~-~~~-~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~~~~~~g~~~~~~~~~~~ 171 (366)
. ... +|..+++|++|+.++.|+.+. +.++++++.+...+.++..|.+|.+.++++ .++|+..+|.++|+++.++|
T Consensus 83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp ECCSSSSCCCEEEEEECHHHHTTCTTS-TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGG
T ss_pred ccccccCCCCCCEEeCCHHHHHHhCCC-CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcCh
Confidence 0 001 111137899999999777554 367899988876777788999999999998 68899889989999999999
Q ss_pred hHHH--HHHHHhhhcchhhHHHHHHhcc-CCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceE
Q 017777 172 RFNK--IFNNGMSSHSTITMKKILENYK-GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEH 248 (366)
Q Consensus 172 ~~~~--~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 248 (366)
+... .|...|........ .+++.++ .+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++.+++++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999988776555 6777772 266778999999999999999999999999999999999998887788999
Q ss_pred EEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCC---CcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC
Q 017777 249 VGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPV---NGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN 325 (366)
Q Consensus 249 ~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (366)
+.+|+++++|.+|+|+++++||+|+++++..+|++++++|+| ||+|+|.|...++....+........+++.|+..
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~- 319 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM- 319 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhcc-
Confidence 999999877767999999999999999999999999999999 9999999998766543211122345667777664
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 326 PGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 326 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.+++.++.++|.++|+++||+++++++.++..++||++|
T Consensus 320 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 320 FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 378999999999999999999999999888889999986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=362.78 Aligned_cols=357 Identities=48% Similarity=0.797 Sum_probs=276.1
Q ss_pred CCCccccCCCCCccHHHHHHHH--HHHhhhHHHHHHHHHHhhChHHHHhhcCCCCC---CCHHHHHhhCCCC--CCCCcc
Q 017777 4 TSSETQISPAQGSDEEANLLAM--QLTSASVLPMVLKSAIELDLLEIIAKAGPDAF---MSPKDIASQLPTK--NPDAHT 76 (366)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~---~t~~ela~~~~~~--~~~~~~ 76 (366)
|++..+++..+ +..++...++ +++.+++.+++|++|+++|||+.|.+.+ +| +|++|||++++++ +|.+++
T Consensus 7 ~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g--~pg~~~t~~eLA~~~~~~~~~~~~~~ 83 (372)
T 1fp1_D 7 TKEDNQISATS-EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKAT--PPGAFMSPSEIASKLPASTQHSDLPN 83 (372)
T ss_dssp -------------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCS--STTCCBCHHHHHTTSCGGGCCTTHHH
T ss_pred cccccccCchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcC--CCCCCcCHHHHHHhcCCCCCCCcChH
Confidence 34444454443 4557777788 9999999999999999999999999741 15 9999999999982 454788
Q ss_pred hHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcC-Cchh
Q 017777 77 VLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEG-GIPF 155 (366)
Q Consensus 77 ~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~ 155 (366)
.++|||++|++.|+|++..+..++|..+++|++|+.++.|+.+.+..++++++.+...+.++..|.+|.+.++++ .++|
T Consensus 84 ~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~ 163 (372)
T 1fp1_D 84 RLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLF 163 (372)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC----
T ss_pred HHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChh
Confidence 999999999999999863000011111268999999997775533257888888876777888999999999998 8899
Q ss_pred HhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchh
Q 017777 156 NKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPH 235 (366)
Q Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 235 (366)
+..+|.++|+++.++|+....|...|........+.+++.++.+.+..+|||||||+|.++..+++++|+++++++|+|.
T Consensus 164 ~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~ 243 (372)
T 1fp1_D 164 KNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ 243 (372)
T ss_dssp ----------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHH
Confidence 98889889999999999999999999988777777888888657788999999999999999999999999999999999
Q ss_pred HHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhh
Q 017777 236 VIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVI 315 (366)
Q Consensus 236 ~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 315 (366)
+++.+++.++++++.+|+++++|.+|+|++.++||+|+++++..+|++++++|+|||+++|.|...++............
T Consensus 244 ~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~ 323 (372)
T 1fp1_D 244 VIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 323 (372)
T ss_dssp HHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHH
T ss_pred HHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHH
Confidence 99999888899999999988777679999999999999999999999999999999999999988766533221111344
Q ss_pred hcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC-CCceeEEEEEe
Q 017777 316 HVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS-AFNTYIMEFLK 364 (366)
Q Consensus 316 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~k 364 (366)
.+++.|+.. .+++.++.++|.++|+++||+++++++. .+.+++||++|
T Consensus 324 ~~d~~~~~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 324 TLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHH-HSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HhhHHHHhc-cCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 566666654 3688899999999999999999999884 34269999986
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-48 Score=360.30 Aligned_cols=315 Identities=25% Similarity=0.362 Sum_probs=276.4
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCc
Q 017777 23 LAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGK 102 (366)
Q Consensus 23 ~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 102 (366)
.+++++.+++.+++|++|+++|||+.|.+ ||.|++|||+++++ +++.++|||++|++.|++++. .
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~----~--- 72 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD----G--- 72 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----T---
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec----C---
Confidence 47899999999999999999999999987 59999999999999 999999999999999999963 1
Q ss_pred cccccccchhchhhhcCCCCCChhHHHHhhcChhHH-HhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHh
Q 017777 103 VERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLM-ESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGM 181 (366)
Q Consensus 103 ~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 181 (366)
+++|.+|+.++.+..+ ++.++.+++.+...+..+ ..|.+|.++++++.++|+..+|.++|+++.++++....|..+|
T Consensus 73 -~~~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (332)
T 3i53_A 73 -QGVYGLTEFGEQLRDD-HAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLM 150 (332)
T ss_dssp -TSBEEECTTGGGGSTT-CTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred -CCeEEcCHhHHHHhcC-CchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence 5899999999988654 445788888775444445 7899999999999999999999889999999999999999999
Q ss_pred hhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCC
Q 017777 182 SSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMF 254 (366)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~ 254 (366)
........+.+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ .++++++.+|++
T Consensus 151 ~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 151 SHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp HHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 9877766667777776 77789999999999999999999999999999999888887764 268999999999
Q ss_pred CCCCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCH
Q 017777 255 VSVPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTE 333 (366)
Q Consensus 255 ~~~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 333 (366)
+++|. .|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++. .. ...+++.|+.. .+++.+|.
T Consensus 230 ~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~-~~~~~~t~ 301 (332)
T 3i53_A 230 DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTY-FGGKERSL 301 (332)
T ss_dssp SCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHH-HSCCCCCH
T ss_pred CCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhh-CCCCCCCH
Confidence 87774 599999999999999989999999999999999999999987664 11 13566767665 48999999
Q ss_pred HHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 334 QEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 334 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
++|.++|+++||+++++++.++ .++||+++
T Consensus 302 ~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 302 AELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999999888 99999987
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-47 Score=353.91 Aligned_cols=322 Identities=24% Similarity=0.383 Sum_probs=282.7
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
+++.+...+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++++ +++.++|||++|++.|++++.
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~- 74 (334)
T 2ip2_A 4 SNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD- 74 (334)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec-
Confidence 444677889999999999999999999999999986 59999999999999 999999999999999999963
Q ss_pred ccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHH
Q 017777 96 RNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNK 175 (366)
Q Consensus 96 ~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 175 (366)
+ ++.|++|+.++.++ + ++.++++++.+...+.. ..|.+|.+.++++.++|+..+|.++|+++.++++...
T Consensus 75 ---~----~~~y~~t~~s~~l~-~-~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 144 (334)
T 2ip2_A 75 ---T----RDGYANTPTSHLLR-D-VEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGR 144 (334)
T ss_dssp ---T----TTEEEECHHHHTTS-S-STTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHH
T ss_pred ---C----CCeEecCHHHHHHh-C-CCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHH
Confidence 1 47999999999777 3 44678888888766555 8999999999999999998899899999999999999
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceE
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEH 248 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~ 248 (366)
.|...| .......+.+++.++ +.+ .+|||||||+|..+..+++.+|+.+++++|++.+++.+++. +++++
T Consensus 145 ~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 221 (334)
T 2ip2_A 145 RFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSL 221 (334)
T ss_dssp HHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEE
T ss_pred HHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEE
Confidence 999999 887777788888887 777 99999999999999999999999999999998887776542 58999
Q ss_pred EEccCCCCCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 249 VGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 249 ~~~D~~~~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
+.+|+++++|.. |+|++.+++|+|+++++..+|++++++|+|||+++|.|...++.... .....+++.|+... +
T Consensus 222 ~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~ 296 (334)
T 2ip2_A 222 VGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-A 296 (334)
T ss_dssp EESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-S
T ss_pred ecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-C
Confidence 999999877754 99999999999999999999999999999999999999887654321 23345666676553 7
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
++.++.++|.++|+++||+++++++.++..++|+++|
T Consensus 297 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 297 GRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 8899999999999999999999999888899999987
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=354.60 Aligned_cols=337 Identities=29% Similarity=0.489 Sum_probs=288.0
Q ss_pred CccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 15 GSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+-.++...+++++.+++.+++|++++++|||+.|.+.+ +|.|++|||+++++ +|.+++.++|||++|++.|+|++.
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEe
Confidence 345577888999999999999999999999999999742 49999999999999 333478999999999999999963
Q ss_pred cccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHh-cCCchhHhhhCCCchhhcccCchH
Q 017777 95 LRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVL-EGGIPFNKAYGMNAFDYHGKDLRF 173 (366)
Q Consensus 95 ~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~ 173 (366)
.+| ++.|++|+.++.|+.+. +.++++++.+...+.++..|.+|.+.++ +|.++|+..+|.++|+++.++|+.
T Consensus 88 ----~~~--~~~y~~t~~s~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~ 160 (352)
T 1fp2_A 88 ----TKE--EESYALTVASELLVRGS-DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEY 160 (352)
T ss_dssp ----ESS--SEEEEECHHHHTTSTTS-SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHH
T ss_pred ----cCC--CCeEeCCHHHHHHhCCC-CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHH
Confidence 112 48999999999877554 3678899888767777889999999999 888899999999999999999999
Q ss_pred HHHHHHHhhhcchhhHHHHHHhcc-CCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEcc
Q 017777 174 NKIFNNGMSSHSTITMKKILENYK-GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGD 252 (366)
Q Consensus 174 ~~~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (366)
...|...|........+. ++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++++.+|
T Consensus 161 ~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d 239 (352)
T 1fp2_A 161 NTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGD 239 (352)
T ss_dssp HHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECC
T ss_pred HHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEecc
Confidence 999999999887766666 66671 2677899999999999999999999999999999999999999887889999999
Q ss_pred CCCCCCCCCEEEeccccccCChHHHHHHHHHHHHhCCC---CcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 253 MFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPV---NGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 253 ~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
+++++|..|+|++.++||+|+++++..+|++++++||| ||+++|.|...++....+........+++.|+. . +++
T Consensus 240 ~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~ 317 (352)
T 1fp2_A 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGK 317 (352)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCC
T ss_pred ccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCC
Confidence 98877777999999999999999989999999999999 999999999876643321111233456666665 3 588
Q ss_pred cCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.++.++|.++|+++||+++++++..+..++||++|
T Consensus 318 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 318 ERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp CEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 89999999999999999999998878889999986
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=343.74 Aligned_cols=330 Identities=23% Similarity=0.328 Sum_probs=280.5
Q ss_pred CCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccc
Q 017777 13 AQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
.+...++.+..+++++.+++.+++|++++++|||+.|.. +|.|++|||+++++ +++.++|||++|++.|+++
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~ 80 (374)
T 1qzz_A 9 PLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLE 80 (374)
T ss_dssp -CCCCHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEE
Confidence 334467889999999999999999999999999999975 59999999999999 9999999999999999999
Q ss_pred cccccCCCCcccc--ccccchhchhhhcCCCCCChhHHHHhhcChhHH-HhhhhhHHHHhcCCchhHhhhCCCchhhccc
Q 017777 93 CSLRNLPDGKVER--LYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLM-ESWYYLKDAVLEGGIPFNKAYGMNAFDYHGK 169 (366)
Q Consensus 93 ~~~~~~~~g~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~ 169 (366)
+. + ++ .|++|+.+..+..+. +.++++++.+...+..+ ..|.+|.+.++++.+++...+|.++|+++.+
T Consensus 81 ~~----~----~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 151 (374)
T 1qzz_A 81 GG----E----KQGRPLRPTRLGMLLADGH-PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSA 151 (374)
T ss_dssp CC----C----C-CCCCEECTTGGGGSTTC-TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHH
T ss_pred Ee----C----CCCeEEEEChHHHhhcCCC-cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhh
Confidence 63 2 45 899999998777554 46788888776544455 7999999999999999999999899999999
Q ss_pred CchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC------
Q 017777 170 DLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF------ 243 (366)
Q Consensus 170 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------ 243 (366)
+++....|...|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++.
T Consensus 152 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~ 230 (374)
T 1qzz_A 152 DVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL 230 (374)
T ss_dssp CHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCC
Confidence 9999999999998877777778888887 778899999999999999999999999999999998888776542
Q ss_pred -CCceEEEccCCCCCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc--ccCCCCCCchhhhhhhhcch
Q 017777 244 -PGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES--ILPVTPDTSLASKVVIHVDC 319 (366)
Q Consensus 244 -~~v~~~~~D~~~~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~--~~~~~~~~~~~~~~~~~~~~ 319 (366)
++++++.+|+++++|.. |+|++.+++|+|+++++..+|++++++|+|||+++|.|. ..++... ......+++
T Consensus 231 ~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~ 306 (374)
T 1qzz_A 231 ADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDL 306 (374)
T ss_dssp TTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHH
T ss_pred CCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcch
Confidence 48999999998877764 999999999999999888999999999999999999998 6654321 122345566
Q ss_pred hhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCce-----eEEEEEec
Q 017777 320 IMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNT-----YIMEFLKS 365 (366)
Q Consensus 320 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vie~~k~ 365 (366)
.|+... +++.++.++|.++|+++||+++++...++.. ++|+++|.
T Consensus 307 ~~~~~~-~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 307 RMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp HHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEEC
T ss_pred HHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEEC
Confidence 666543 7889999999999999999999999887777 99999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-45 Score=343.11 Aligned_cols=330 Identities=16% Similarity=0.178 Sum_probs=264.5
Q ss_pred CCCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccc
Q 017777 12 PAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVL 91 (366)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 91 (366)
+.+.+-.++...+++++.+++.+++|++++++|||+.|.+.+ +|+|++|||+++++ +++.++|||++|++.|+|
T Consensus 7 ~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l 80 (363)
T 3dp7_A 7 KEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTI 80 (363)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSE
T ss_pred cCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCe
Confidence 344556678889999999999999999999999999999832 59999999999999 999999999999999999
Q ss_pred ccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhC--CCchhhccc
Q 017777 92 NCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYG--MNAFDYHGK 169 (366)
Q Consensus 92 ~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g--~~~~~~~~~ 169 (366)
+++ +++|++|+.++.|+.+.. ...++.+. .+..+++|.+|.+++++|.+++...+| .++|+++.+
T Consensus 81 ~~~---------~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~ 147 (363)
T 3dp7_A 81 LLE---------EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQ 147 (363)
T ss_dssp EEE---------TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGG
T ss_pred Eec---------CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhh
Confidence 863 589999999988876542 22233332 345678999999999999988888888 688999999
Q ss_pred CchHHH----HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC--
Q 017777 170 DLRFNK----IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-- 243 (366)
Q Consensus 170 ~~~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-- 243 (366)
+|+... .|+..|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 148 ~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 223 (363)
T 3dp7_A 148 LPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTA 223 (363)
T ss_dssp SCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHH
Confidence 998665 36666655432 22333333 356789999999999999999999999999999998888877642
Q ss_pred -----CCceEEEccCCCC---CCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchh-hhh
Q 017777 244 -----PGVEHVGGDMFVS---VPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLA-SKV 313 (366)
Q Consensus 244 -----~~v~~~~~D~~~~---~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~-~~~ 313 (366)
++++++.+|++++ +|. .|+|++.++||+|+++++..+|++++++|+|||+|+|.|.+.++....... ...
T Consensus 224 ~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~ 303 (363)
T 3dp7_A 224 GLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLT 303 (363)
T ss_dssp TCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHH
T ss_pred hcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHH
Confidence 4799999999984 664 499999999999999999999999999999999999999887664322110 011
Q ss_pred hhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEEec
Q 017777 314 VIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFLKS 365 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~k~ 365 (366)
....++.++.. .+++.+|.++|.++|+++||+++++++.. .+.++|+++|.
T Consensus 304 ~~~~~~~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~~ 355 (363)
T 3dp7_A 304 QISLYFTAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRLK 355 (363)
T ss_dssp HHHHHHHHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEEC
T ss_pred HhhhhHHhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEeec
Confidence 12223333322 36788999999999999999999988764 56899999986
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=339.45 Aligned_cols=327 Identities=22% Similarity=0.346 Sum_probs=279.2
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccc
Q 017777 17 DEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLR 96 (366)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 96 (366)
.+....++++++.+++.+++|.+++++|||+.|.. +|.|++|||+++++ +++.++|+|++|++.|+|++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~-- 85 (360)
T 1tw3_A 16 QQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED-- 85 (360)
T ss_dssp -CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred cccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec--
Confidence 34667888999999999999999999999999976 59999999999999 999999999999999999863
Q ss_pred cCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChh-HHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHH
Q 017777 97 NLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKV-LMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNK 175 (366)
Q Consensus 97 ~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 175 (366)
+ +++|++|+.+..+..+. +.+++.++.+...+. .+..|.+|.+.+++|.++++..+|..+|+++..+++...
T Consensus 86 --~----~g~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~ 158 (360)
T 1tw3_A 86 --A----PGEFVPTEVGELLADDH-PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRA 158 (360)
T ss_dssp --E----TTEEEECTTGGGGSTTS-TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHH
T ss_pred --C----CCeEEeCHHHHHHhcCC-chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHH
Confidence 1 57899999988777553 467888877654333 457899999999999999998899899999989999999
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceE
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEH 248 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~ 248 (366)
.|...|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++. +++++
T Consensus 159 ~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 237 (360)
T 1tw3_A 159 SFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDV 237 (360)
T ss_dssp HHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEE
Confidence 9999999887777778888887 778899999999999999999999999999999988887766542 48999
Q ss_pred EEccCCCCCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc-cCCCCCCchhhhhhhhcchhhHhhCC
Q 017777 249 VGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI-LPVTPDTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 249 ~~~D~~~~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
+.+|+++++|.. |+|++.+++|+|+++++..+|++++++|+|||+++|.|.. .++.... .....+++.|+...
T Consensus 238 ~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~- 312 (360)
T 1tw3_A 238 VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL- 312 (360)
T ss_dssp EECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-
T ss_pred EeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-
Confidence 999998877764 9999999999999998889999999999999999999987 5443211 12335566665543
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEECCCc-----eeEEEEEecC
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSSAFN-----TYIMEFLKSA 366 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vie~~k~~ 366 (366)
++..++.++|.++|+++||+++++.+.++. .++|+++|.+
T Consensus 313 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (360)
T 1tw3_A 313 GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPAA 357 (360)
T ss_dssp SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC-
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEeCC
Confidence 788999999999999999999999887665 8999999864
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=328.28 Aligned_cols=317 Identities=19% Similarity=0.210 Sum_probs=271.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCC
Q 017777 22 LLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDG 101 (366)
Q Consensus 22 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g 101 (366)
..+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++++ +++.++|||++|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------- 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------- 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-------
Confidence 578999999999999999999999999997 49999999999999 999999999999999999863
Q ss_pred ccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHh
Q 017777 102 KVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGM 181 (366)
Q Consensus 102 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 181 (366)
+++|++|+.+..++...++.++++++.+...+..+..|.+|.+.++++.++++ . |+++.++++....|...|
T Consensus 73 --~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 144 (335)
T 2r3s_A 73 --AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAM 144 (335)
T ss_dssp --TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHS
T ss_pred --CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHH
Confidence 58999999995444344446788888887665678899999999999887654 3 778888899999999999
Q ss_pred hhcchhhHHHHHHhccCC--CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEcc
Q 017777 182 SSHSTITMKKILENYKGF--EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGD 252 (366)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D 252 (366)
..........+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|
T Consensus 145 ~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 223 (335)
T 2r3s_A 145 SPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGS 223 (335)
T ss_dssp GGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred HHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecc
Confidence 9888777778888887 6 77899999999999999999999999999999988777776642 479999999
Q ss_pred CCC-CCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 253 MFV-SVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 253 ~~~-~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
+++ +.+.. |+|++.+++|+|+++++..+|++++++|+|||+++|.|...++....+ .....+++.|+...++++.
T Consensus 224 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 300 (335)
T 2r3s_A 224 AFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDA 300 (335)
T ss_dssp TTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCC
T ss_pred cccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCc
Confidence 987 66664 999999999999999999999999999999999999998876543222 2234566666665447889
Q ss_pred CCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
++.++|.++|+++||+.+++.+..+..++++++++
T Consensus 301 ~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 301 YTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAYK 335 (335)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEEEC
T ss_pred CCHHHHHHHHHHCCCCeeeEEECCCCceeEEEecC
Confidence 99999999999999999999998888888888764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=328.02 Aligned_cols=312 Identities=15% Similarity=0.254 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccc
Q 017777 18 EEANLLAMQLTS-ASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLR 96 (366)
Q Consensus 18 ~~~~~~l~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 96 (366)
.+...++++++. +++.+++|++++++|||+.|.+ +|.|++|||+++++ +++.++|||++|++.|+|++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-- 97 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-- 97 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee--
Confidence 567778888886 8999999999999999999987 59999999999999 999999999999999999973
Q ss_pred cCCCCccccccccchhchhhhcCCCC---CChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCch-
Q 017777 97 NLPDGKVERLYGLAPVCKFLTKNEDG---VTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLR- 172 (366)
Q Consensus 97 ~~~~g~~~~~y~~t~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~- 172 (366)
++.|++|+.+..++.+.++ .++++++.+. ....++.|.+|.+.++++.+ |+++.++|+
T Consensus 98 -------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~ 159 (359)
T 1x19_A 98 -------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPV 159 (359)
T ss_dssp -------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCC
T ss_pred -------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchh
Confidence 4799999986655555555 6788888775 45677899999999998754 566777888
Q ss_pred --HHHHHHHHhhhcch-hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------
Q 017777 173 --FNKIFNNGMSSHST-ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA------- 242 (366)
Q Consensus 173 --~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------- 242 (366)
....|...|..... ...+.+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++
T Consensus 160 ~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~ 238 (359)
T 1x19_A 160 TREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV 238 (359)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC
Confidence 88999999998887 77788888887 88889999999999999999999999999999999888877753
Q ss_pred CCCceEEEccCCC-CCCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh
Q 017777 243 FPGVEHVGGDMFV-SVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM 321 (366)
Q Consensus 243 ~~~v~~~~~D~~~-~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 321 (366)
.++++++.+|+++ +.+.+|+|++.+++|+|+++++..+|++++++|+|||+++|.|...++. ..+.. ...+ .|
T Consensus 239 ~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~---~~~~--~~ 312 (359)
T 1x19_A 239 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPNF---DYLS--HY 312 (359)
T ss_dssp TTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCCH---HHHH--HH
T ss_pred CCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCchH---HHHH--HH
Confidence 2469999999998 6666699999999999999889999999999999999999999887654 22111 1112 22
Q ss_pred HhhCCCCcc----CCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 322 LAHNPGGKE----RTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 322 ~~~~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+....+++. ++.++|.++|+++||+++++.+.+ ..++++++|+
T Consensus 313 ~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~kp 359 (359)
T 1x19_A 313 ILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVKP 359 (359)
T ss_dssp GGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEECC
T ss_pred HHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeCC
Confidence 222234666 899999999999999999998887 8899999984
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=328.25 Aligned_cols=327 Identities=14% Similarity=0.180 Sum_probs=267.3
Q ss_pred ccccCCC-CCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHH
Q 017777 7 ETQISPA-QGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLL 85 (366)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 85 (366)
+|+.++. .....+....+++++.+++.+++|++++++|||+.|.+ |.|++|||+++++ +++.++|||++|
T Consensus 10 ~~~~~~~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L 80 (352)
T 3mcz_A 10 ETIYESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHAL 80 (352)
T ss_dssp -CTTSCCCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHH
Confidence 4555433 33445556669999999999999999999999999964 8999999999999 999999999999
Q ss_pred hcccccccccccCCCCccccccccchhchhhhcCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCch-hHhhhCCCch
Q 017777 86 ASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIP-FNKAYGMNAF 164 (366)
Q Consensus 86 ~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~g~~~~ 164 (366)
++.|++++. +++|.+|+.+..++.+.++.+++.++.+. ...++.|.+|.+.+++|.+. |+..
T Consensus 81 ~~~gll~~~---------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------ 143 (352)
T 3mcz_A 81 AALGLLTKE---------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------ 143 (352)
T ss_dssp HHTTSEEEE---------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------
T ss_pred HHCCCeEec---------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------
Confidence 999999973 47899999999777666667888877654 33567999999999998653 2221
Q ss_pred hhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCC-CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC
Q 017777 165 DYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEG-LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF 243 (366)
Q Consensus 165 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 243 (366)
.++..+++....|..+|...... +..+++.++ +.+ ..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.
T Consensus 144 ~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 221 (352)
T 3mcz_A 144 SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKT 221 (352)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 23457888899999999873332 336778887 666 899999999999999999999999999999998887766542
Q ss_pred -------CCceEEEccCCC-C--CCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhh
Q 017777 244 -------PGVEHVGGDMFV-S--VPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASK 312 (366)
Q Consensus 244 -------~~v~~~~~D~~~-~--~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 312 (366)
++++++.+|+++ + .+.. |+|++.+++|+|+++++..+|++++++|+|||+|+|.|.+.++....+ .
T Consensus 222 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~ 298 (352)
T 3mcz_A 222 IHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---A 298 (352)
T ss_dssp HHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---H
T ss_pred HHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---c
Confidence 479999999998 4 5554 999999999999999999999999999999999999999887654332 2
Q ss_pred hhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEecC
Q 017777 313 VVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKSA 366 (366)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~~ 366 (366)
....+++.|+....+++.++.++|.++|+++||++++.. .+..++++++|.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~kp~ 350 (352)
T 3mcz_A 299 LSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQRSS 350 (352)
T ss_dssp HHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEECCC
T ss_pred hHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEecCC
Confidence 334667777665457899999999999999999998844 3568899998863
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=175.82 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=124.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC--CCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCCCEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY--PSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKGDAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~ 267 (366)
..++.+|||||||+|..+..+++.+ |+++++++|+ +.+++.|+++ .+|+++++|+.+ +++..|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4567899999999999999999985 6789999998 8888877642 579999999987 666669999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC--------------CCCccCCH
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN--------------PGGKERTE 333 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~t~ 333 (366)
+||++++++...+|++++++|||||++++.|.....+.... ........-+..... .....+|.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999988888999999999999999999998776542110 000000000000000 00134688
Q ss_pred HHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 334 QEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 334 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+++.++|++|||+.++++-....+..+.++|.
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~ 257 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVALKA 257 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEEEc
Confidence 99999999999999988655555666678875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=157.34 Aligned_cols=175 Identities=17% Similarity=0.142 Sum_probs=129.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCC-CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKG-DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~-D~ 262 (366)
..+...+....+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++++|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 44555554334678999999999999999999999999999998 777776653 2489999999987 55543 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc------ch--h---h-HhhCCCCcc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV------DC--I---M-LAHNPGGKE 330 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~------~~--~---~-~~~~~~~~~ 330 (366)
|++..++|++++++...+|++++++|+|||++++.+...++........ ...+. .+ . . .........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLN-KTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHH-HHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHH-HHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 9999999999988878899999999999999999998765531110000 00000 00 0 0 000013445
Q ss_pred CCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
++.++|.++|++|||+.++++.....++++-.+|+
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~ 226 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEec
Confidence 78999999999999999998887777777776653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=149.02 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=122.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCC-CCEEEe
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPK-GDAIFI 265 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~-~D~i~~ 265 (366)
.++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+. .|+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 4454444 446789999999999999999986 678999998 7787777643 489999999987 5553 399999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh--hHhhCCCCccCCHHHHHHHHHHc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI--MLAHNPGGKERTEQEFRALAKAA 343 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~t~~e~~~ll~~a 343 (366)
.+++|++++++...+|++++++|||||++++.+...+................+. .... .....++.++|.++|+++
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a 191 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDL-QTEYYTRIPVMQTIFENN 191 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHH-HHSCCCBHHHHHHHHHHT
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhc-chhhcCCHHHHHHHHHHC
Confidence 9999999998877799999999999999999986554321000000000000000 0000 012335889999999999
Q ss_pred CCceeEEEECCCceeEEEEEec
Q 017777 344 GFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 344 Gf~~~~~~~~~~~~~vie~~k~ 365 (366)
||+++.... ....|++++.|+
T Consensus 192 Gf~v~~~~~-~~~~w~~~~~~~ 212 (220)
T 3hnr_A 192 GFHVTFTRL-NHFVWVMEATKQ 212 (220)
T ss_dssp TEEEEEEEC-SSSEEEEEEEEC
T ss_pred CCEEEEeec-cceEEEEeehhh
Confidence 998766554 588899998875
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-19 Score=154.54 Aligned_cols=169 Identities=14% Similarity=0.228 Sum_probs=119.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...++..++ ..+. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++. ++++++++|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 344555554 4444 9999999999999999998 8889999998 7787766542 479999999987 6664
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++.+++|++++. ..+|++++++|+|||++++.+...+.................+..........++.++|.
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQ 187 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHH
Confidence 3 999999999999665 478999999999999999987554321000000000000000000000123345789999
Q ss_pred HHHHHcCCceeEEEECCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVSSAFNTYIMEF 362 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~~~~~vie~ 362 (366)
++|+++||+.+++.....+.|++..
T Consensus 188 ~~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 188 NVLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHHcCCCeEEEEecCCceEEEEe
Confidence 9999999999999988777776443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=149.30 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=126.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~ 259 (366)
...++..+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 345666665 6778899999999999999999997 7889999998 8887776542 579999999987 5554
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++..++|++++. ..+|++++++|+|||++++.+.......... .....++.++|.
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 165 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVG 165 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHH
Confidence 3 999999999999765 5889999999999999999987654431110 012235799999
Q ss_pred HHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 338 ALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
++++++||+++++.........+.++|.
T Consensus 166 ~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 193 (219)
T 3dh0_A 166 LILEDAGIRVGRVVEVGKYCFGVYAMIV 193 (219)
T ss_dssp HHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred HHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence 9999999999999888888888888775
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=142.49 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=112.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCCCCCCC--CEEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFVSVPKG--DAIF 264 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~~~~~--D~i~ 264 (366)
..+...+....+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+..+.. |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 345555543556679999999999999999998 568999998 8888777653 67999999998754433 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC-------CccCCHHHHH
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG-------GKERTEQEFR 337 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~t~~e~~ 337 (366)
+.+++|++++++...+|++++++|+|||++++.+...+.......... ......... .+. ...++.++|.
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRT-LQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEE-CTTSCEEEEECCCCCHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeee-cCCcchhhHhhcCCCHHHHH
Confidence 999999999987889999999999999999999876533211000000 000000000 011 1235899999
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
++|+++||++.....
T Consensus 190 ~~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 190 ERLTALGWSCSVDEV 204 (218)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HHHHHCCCEEEeeec
Confidence 999999999554443
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-18 Score=151.33 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=120.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC-CEEEecc-ccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG-DAIFIKW-ICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~-D~i~~~~-~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++++|+.+ +.+.. |+|++.. ++|++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 356899999999999999999874 47899998 888887765 3689999999987 55444 9999998 9999865
Q ss_pred -HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh--------------------hhhhhcchhhHhhCCC------
Q 017777 275 -EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS--------------------KVVIHVDCIMLAHNPG------ 327 (366)
Q Consensus 275 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~------ 327 (366)
++...+|++++++|+|||++++.+...++.-...... .....+++.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 4667999999999999999999754333321000000 0000011111100001
Q ss_pred -----CccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEecC
Q 017777 328 -----GKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKSA 366 (366)
Q Consensus 328 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~~ 366 (366)
.+.+|.++|.++|+++||+++++.......+++.++|.|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a 250 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA 250 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence 234689999999999999999988877888889999976
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-18 Score=149.91 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=118.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~- 260 (366)
.+.+.+.++ ...+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++++|+.+ +++..
T Consensus 29 ~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (227)
T 1ve3_A 29 EPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKT 103 (227)
T ss_dssp HHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTC
T ss_pred HHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCc
Confidence 334444333 468999999999999999999876 8999998 8887776542 689999999987 55543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC--C----------
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP--G---------- 327 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------- 327 (366)
|+|++..++|++..++...+|++++++|+|||++++.+...+...... ..........++....+ .
T Consensus 104 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (227)
T 1ve3_A 104 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKS 182 (227)
T ss_dssp EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC--
T ss_pred EEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEecc
Confidence 999999998777777778999999999999999999876422110000 00000000000000000 0
Q ss_pred --------CccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 328 --------GKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 328 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
...++ .+|.++|+++||+.+++...+...++|+++|+
T Consensus 183 ~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~~ 227 (227)
T 1ve3_A 183 EQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227 (227)
T ss_dssp ---CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEEC
T ss_pred chhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCCC
Confidence 11122 48999999999999999998777889999885
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=147.36 Aligned_cols=156 Identities=19% Similarity=0.282 Sum_probs=120.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC-CCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV-SVPKG-- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~-- 260 (366)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345666665 6677899999999999999999987 679999998 7777766543 689999999987 66543
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++.+++|++++++...+|++++++|+|||++++.+...+..... .. .+.-.... .+...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~----~~~~~~~~--~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW--DD----EFKEYVKQ--RKYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC--CH----HHHHHHHH--HTCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc--hH----HHHHHHhc--CCCCCCCHHHHHHHH
Confidence 99999999999987888899999999999999999999866541100 00 11111111 134567899999999
Q ss_pred HHcCCceeEEEECC
Q 017777 341 KAAGFQGFQVVSSA 354 (366)
Q Consensus 341 ~~aGf~~~~~~~~~ 354 (366)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=148.61 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=116.4
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~ 259 (366)
.+..++..++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3556666666 66788999999999999999999875 8999998 8888776542 579999999987 6664
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh-HhhCCCCccCCHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM-LAHNPGGKERTEQEF 336 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~ 336 (366)
+ |+|++..++|++++.. .+|++++++|||||++++.+...+.. .... ..+.... .........++.++|
T Consensus 102 ~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 173 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEN---DAFD---VFYNYVEKERDYSHHRAWKKSDW 173 (260)
T ss_dssp TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSS---HHHH---HHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CCEEEEEEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEEcCCCCC---HHHH---HHHHHHHHhcCccccCCCCHHHH
Confidence 3 9999999999998764 88999999999999999998765543 1111 1111111 111113456789999
Q ss_pred HHHHHHcCCceeEEEEC
Q 017777 337 RALAKAAGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~~ 353 (366)
.++|+++||+++.+...
T Consensus 174 ~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 174 LKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEEe
Confidence 99999999998776654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-17 Score=142.50 Aligned_cols=151 Identities=17% Similarity=0.293 Sum_probs=113.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC---CCCCC--CE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV---SVPKG--DA 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~ 262 (366)
...+...++.+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++.+ |+
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSE
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeE
Confidence 3344444443456789999999999999999987 557899998 8888888754 8999998865 55543 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA 342 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 342 (366)
|++.+++|++++++...+|++++++|||||++++........ ....+.. . .......++.++|.+++++
T Consensus 105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~-~-~~~~~~~~~~~~l~~~l~~ 173 (240)
T 3dli_A 105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFY-I-DPTHKKPVHPETLKFILEY 173 (240)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHT-T-STTCCSCCCHHHHHHHHHH
T ss_pred EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHh-c-CccccccCCHHHHHHHHHH
Confidence 999999999998878899999999999999999977642210 0111111 1 1123456789999999999
Q ss_pred cCCceeEEEECC
Q 017777 343 AGFQGFQVVSSA 354 (366)
Q Consensus 343 aGf~~~~~~~~~ 354 (366)
+||+++++....
T Consensus 174 aGf~~~~~~~~~ 185 (240)
T 3dli_A 174 LGFRDVKIEFFE 185 (240)
T ss_dssp HTCEEEEEEEEC
T ss_pred CCCeEEEEEEec
Confidence 999998876643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=147.05 Aligned_cols=149 Identities=21% Similarity=0.344 Sum_probs=115.5
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC-CCCCC--C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV-SVPKG--D 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D 261 (366)
..++..+. ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++++|+.+ +++.. |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45566565 5567899999999999999998876 457999997 7777766542 579999999877 55543 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+|++.+++|++++++...+|++++++|+|||++++.+........ ..+. ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eecc-----cCCcccCCHHHHHHHHH
Confidence 999999999999888889999999999999999999875433210 1110 01234578999999999
Q ss_pred HcCCceeEEEECC
Q 017777 342 AAGFQGFQVVSSA 354 (366)
Q Consensus 342 ~aGf~~~~~~~~~ 354 (366)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999887653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=144.23 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=118.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ + ..
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~ 129 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EP 129 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC
Confidence 345666665 66778999999999999999997765 49999998 7777766532 579999999865 3 33
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCC----Cchh-hhhhhhcchhhHhhCCCCccCCHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPD----TSLA-SKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
.|+|++..++|++++++...+|++++++|||||++++.+...+.... ..+. .......+.......+++..++.+
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 49999999999997666779999999999999999999876544210 0000 000011111111123567778999
Q ss_pred HHHHHHHHcCCceeEEEEC
Q 017777 335 EFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~~ 353 (366)
+|.++++++||+++++...
T Consensus 210 ~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 210 MVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHhCCcEEEEEEeC
Confidence 9999999999999988765
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=143.86 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=119.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 445666666 6778899999999999999999887 679999998 7777766532 479999999987 6664
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
+ |+|++..++|++++. ..+|++++++|+|||++++.+........... ....+...... +....++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGAK----KEAVDAFRAGG-GVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHH----HHHHHHHHHHH-TCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChhH----HHHHHHHHhhc-CccCCCCHHHHH
Confidence 3 999999999999776 48899999999999999999986644211110 01111111111 356678999999
Q ss_pred HHHHHcCCceeEEEECC
Q 017777 338 ALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~ 354 (366)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999998887753
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=140.66 Aligned_cols=154 Identities=18% Similarity=0.283 Sum_probs=115.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~ 260 (366)
...++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 344556565 77889999999999999999998765 7899997 7787766542 579999999977 66543
Q ss_pred --CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh-hHhhCCCCccCCHHHHH
Q 017777 261 --DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI-MLAHNPGGKERTEQEFR 337 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~e~~ 337 (366)
|+|++.+++|++++. ..+|++++++|+|||++++.+...+.. .... ...... ..........++.++|.
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED---PVLD---EFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS---HHHH---HHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCC---hhHH---HHHHHHHHhccccccCCCCHHHHH
Confidence 999999999999865 478999999999999999998876543 1111 111111 11111234567899999
Q ss_pred HHHHHcCCceeEEEEC
Q 017777 338 ALAKAAGFQGFQVVSS 353 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~ 353 (366)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=148.38 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=120.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHH-HhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMII-SKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~ 267 (366)
+.+..+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++. .+++++++|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999986 6688999999998 8887766542 359999999987 55543 9999999
Q ss_pred ccccCChHH-HHHHHHHHHHhCCCCcEEEEEccccCCCCCCch--h-----hhhhhhcchhhHhhCCC--CccCCHHHHH
Q 017777 268 ICHDWSDEH-CVKFLKNCYEALPVNGKVIVAESILPVTPDTSL--A-----SKVVIHVDCIMLAHNPG--GKERTEQEFR 337 (366)
Q Consensus 268 ~lh~~~~~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~--~~~~t~~e~~ 337 (366)
++|++++.+ ...+|++++++|+|||++++.+...+....... . ..........+...... ...++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 999996554 457999999999999999998876543321110 0 00000000001110001 1347999999
Q ss_pred HHHHHcCCceeEEEECC-CceeEEEEEecC
Q 017777 338 ALAKAAGFQGFQVVSSA-FNTYIMEFLKSA 366 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~-~~~~vie~~k~~ 366 (366)
++|+++||+++++.... .....+.++|+|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~Kpa 305 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARKPA 305 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEECCC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEecCC
Confidence 99999999999988764 445577788875
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=144.07 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=121.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~- 259 (366)
...++..+. ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+. +.
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 445666665 67788999999999999999999877 79999998 8888776542 3799999998754 43
Q ss_pred CCEEEeccccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh-----hhhhhcchhhHhhCCC
Q 017777 260 GDAIFIKWICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS-----KVVIHVDCIMLAHNPG 327 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 327 (366)
.|+|++..++|++++ ++...+|++++++|||||++++.+...+......... ......++......++
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 399999999999944 5667999999999999999999988765421000000 0000012222222357
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
+..++.+++.++++++||+++++...+
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 788899999999999999999887764
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=144.54 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=116.5
Q ss_pred HHHHHHhc---cCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-C
Q 017777 189 MKKILENY---KGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-S 256 (366)
Q Consensus 189 ~~~~~~~~---~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~ 256 (366)
...++..+ ..+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 34555555 126678899999999999999999986 468999998 7777766542 579999999987 6
Q ss_pred CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHH
Q 017777 257 VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 257 ~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
++.+ |+|++..++|++++. ..+|++++++|||||++++.+.......... . ...+.... . .....+.+
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~---~~~~~~~~-~-~~~~~~~~ 215 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS---S---IQPILDRI-K-LHDMGSLG 215 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---G---GHHHHHHH-T-CSSCCCHH
T ss_pred CCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchH---H---HHHHHHHh-c-CCCCCCHH
Confidence 6643 999999999999874 6889999999999999999998765432111 0 11111111 1 22346899
Q ss_pred HHHHHHHHcCCceeEEEEC
Q 017777 335 EFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~~ 353 (366)
+|.++|+++||+++++...
T Consensus 216 ~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 216 LYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHCCCeEEEEEEC
Confidence 9999999999999988765
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=141.44 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=117.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC-CEEEe-ccccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG-DAIFI-KWICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~-~~~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999876 7899998 8888877653 689999999987 55444 99995 559988854
Q ss_pred -HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhh--------------------hhhhcchhhHhhCCCC-----
Q 017777 275 -EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASK--------------------VVIHVDCIMLAHNPGG----- 328 (366)
Q Consensus 275 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~----- 328 (366)
++...+|++++++|+|||++++.+...++......... ......+.+.....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 56789999999999999999998765443211000000 0000011111000011
Q ss_pred ------ccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 329 ------KERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 329 ------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
+.+|.++|.++|+++||+++.+....+...+++++|+
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 3469999999999999987777666677889999885
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=139.04 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=114.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+ |+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 589999999999999999987 568999998 888887765 4789999999987 55533 9999999999998777
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC-C
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA-F 355 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~ 355 (366)
...+|++++++|+|||++++.....+... .+. . . ......++.++|.++|+++||+++++...+ .
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~--~-~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE----------PMY--H-P-VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE----------EEC--C-S-SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh----------hhh--c-h-hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 78999999999999999999886543310 000 0 0 012345689999999999999999887764 3
Q ss_pred ceeEEEEE
Q 017777 356 NTYIMEFL 363 (366)
Q Consensus 356 ~~~vie~~ 363 (366)
+...+...
T Consensus 186 p~~~l~~~ 193 (203)
T 3h2b_A 186 PHAYLTAE 193 (203)
T ss_dssp SEEEEEEE
T ss_pred cchhhhhh
Confidence 44444433
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=136.29 Aligned_cols=148 Identities=17% Similarity=0.170 Sum_probs=117.4
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCCCCCC--CCEEEecc
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFVSVPK--GDAIFIKW 267 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~~~--~D~i~~~~ 267 (366)
+++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .+++++..+| .+++. .|+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 344444 56778999999999999999998874 8999998 777777765 4789999999 44443 39999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCce
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQG 347 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 347 (366)
++|++++. ..+|++++++|+|||++++.+.......... +....++.++|.++|+ ||++
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 99999765 4889999999999999999987655432111 0122368999999999 9999
Q ss_pred eEEEECCCceeEEEEEec
Q 017777 348 FQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 348 ~~~~~~~~~~~vie~~k~ 365 (366)
++..........+.++|+
T Consensus 143 ~~~~~~~~~~~~l~~~~~ 160 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLKRK 160 (170)
T ss_dssp EEEECSSTTEEEEEEEEC
T ss_pred EEccCCCCceEEEEEecC
Confidence 999998877888888765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=143.85 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=116.9
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 258 (366)
....+++.++.+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence 344566665545677899999999999999999985 578999998 8888776542 479999999987 665
Q ss_pred CC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 259 KG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 259 ~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
.+ |+|++..++|+++ ...+|+++.++|||||++++.+........... . ......... ....++.++|
T Consensus 183 ~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~----~~~~~~~~~--~~~~~s~~~~ 252 (312)
T 3vc1_A 183 KGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-K----WVSQINAHF--ECNIHSRREY 252 (312)
T ss_dssp TTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-H----HHHHHHHHH--TCCCCBHHHH
T ss_pred CCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-H----HHHHHHhhh--cCCCCCHHHH
Confidence 43 9999999999985 568999999999999999999976655321110 0 111111111 1235789999
Q ss_pred HHHHHHcCCceeEEEEC
Q 017777 337 RALAKAAGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~~ 353 (366)
.++|+++||+++++...
T Consensus 253 ~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 253 LRAMADNRLVPHTIVDL 269 (312)
T ss_dssp HHHHHTTTEEEEEEEEC
T ss_pred HHHHHHCCCEEEEEEeC
Confidence 99999999999988775
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=137.87 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=108.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC-CEEEeccccccCChH
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG-DAIFIKWICHDWSDE 275 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~~~~ 275 (366)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.. +.+.. |+|++.+++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999986 568999998 8888877765578889999876 52233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC-CceeEEEEC
Q 017777 276 HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG-FQGFQVVSS 353 (366)
Q Consensus 276 ~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~ 353 (366)
+...+|++++++|+|||++++........... .. ......++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 88899999999999999999986543221000 00 01123468999999999999 999887654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=141.03 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=115.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 445666665 6778899999999999999999987 668999998 8887776532 479999999987 4433
Q ss_pred C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 260 G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 260 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
. |+|++..++|++++. ..+|++++++|||||++++.+........... ....... ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEE------IAQACGV--SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH------HHHTTTC--SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChHH------HHHHHhc--ccccccCCHHHHHH
Confidence 3 999999999998764 58899999999999999999876544322110 0000000 01224578999999
Q ss_pred HHHHcCCceeEEEEC
Q 017777 339 LAKAAGFQGFQVVSS 353 (366)
Q Consensus 339 ll~~aGf~~~~~~~~ 353 (366)
+|+++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=135.90 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=112.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCC-CCC--CCCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFV-SVP--KGDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~--~~D~i~ 264 (366)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. .+++++.+|+.. +.+ ..|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4568999999999999999999888889999998 8888777542 289999999865 433 239999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH----HHH
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR----ALA 340 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll 340 (366)
+..++|++++++...+|++++++|+|||.+++........... ......... ......++.+++. +++
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~ 179 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG-------NLFEGNLRH-RDHRFEWTRKEFQTWAVKVA 179 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC-------CT-----GG-GCCTTSBCHHHHHHHHHHHH
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc-------ccCcccccc-cCceeeecHHHHHHHHHHHH
Confidence 9999999998888899999999999999666554321110000 000000000 1133446889999 889
Q ss_pred HHcCCceeEEEE------CCCceeEEEEEecC
Q 017777 341 KAAGFQGFQVVS------SAFNTYIMEFLKSA 366 (366)
Q Consensus 341 ~~aGf~~~~~~~------~~~~~~vie~~k~~ 366 (366)
+++||++.-.-. .+....+-.++|.|
T Consensus 180 ~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 180 EKYGYSVRFLQIGEIDDEFGSPTQMGVFTLGA 211 (219)
T ss_dssp HHHTEEEEEEEESCCCTTSCCSEEEEEEEECC
T ss_pred HHCCcEEEEEecCCccccCCCCeEEEEEeccC
Confidence 999997644311 12455677777765
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=137.89 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=106.7
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------------------CCCceEEEc
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------------------FPGVEHVGG 251 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~ 251 (366)
.++..+. .....+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3444454 566789999999999999999986 568999998 888877653 257999999
Q ss_pred cCCC-CCC---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 252 DMFV-SVP---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 252 D~~~-~~~---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
|+.+ +.+ ..|+|++..++|++++++...++++++++|||||+++++....+... . ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------~--------~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------L--------EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------S--------SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------c--------CCC
Confidence 9987 543 23999999999999988778899999999999999555543322110 0 001
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 112578999999998 9998776654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=143.90 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=119.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~ 260 (366)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+.....
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 445666665 6677899999999999999999886 569999998 7777766542 46999999986521234
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCC----chhh-hhhhhcchhhHhhCCCCccCCHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDT----SLAS-KVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
|+|++..++|++++++...+|+++.++|+|||++++.+...+..... .+.. ......+.......+++..++.++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 236 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 236 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHH
Confidence 99999999999987777899999999999999999998876542100 0000 000011111111124677789999
Q ss_pred HHHHHHHcCCceeEEEEC
Q 017777 336 FRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~ 353 (366)
+.++++++||+++++...
T Consensus 237 ~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 237 MVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHhCCCEEEEEEec
Confidence 999999999999887664
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-17 Score=145.01 Aligned_cols=152 Identities=19% Similarity=0.300 Sum_probs=112.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--CEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--DAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~~ 268 (366)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999998 7777766542 579999999987 55543 99999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcch--hhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDC--IMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+|++++.+ .+|++++++|+|||++++.+.........+........... ..... .++..++..++.++|+++||+
T Consensus 115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAY-MKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHH-TTCCTTGGGGHHHHHHHTTCE
T ss_pred hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHCCCC
Confidence 99998765 78999999999999999988543211000000001111111 11111 245667788999999999999
Q ss_pred eeEEEEC
Q 017777 347 GFQVVSS 353 (366)
Q Consensus 347 ~~~~~~~ 353 (366)
++++...
T Consensus 192 ~v~~~~~ 198 (276)
T 3mgg_A 192 KIRVEPR 198 (276)
T ss_dssp EEEEEEE
T ss_pred eEEEeeE
Confidence 9887654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-16 Score=138.04 Aligned_cols=152 Identities=12% Similarity=0.124 Sum_probs=114.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIF 264 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~ 264 (366)
.+.+...++ ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++..+++++.+|+.+ +++.. |+|+
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 445666665 56789999999999999999998 7789999998 8899988877899999999987 66543 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
+.+++|++++. ..+|++++++|| ||++++.+...+..... .. ...+...... .....++.+++. +|+++|
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~~---~~~~~~~~~~--~~~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-WL---YDYFPFLWED--ALRFLPLDEQIN-LLQENT 169 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC-GG---GGTCHHHHHH--HHTSCCHHHHHH-HHHHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH-HH---HHHHHHHhhh--hhhhCCCHHHHH-HHHHcC
Confidence 99999999765 488999999999 99999988754332111 00 0011100010 123345678898 999999
Q ss_pred CceeEEEEC
Q 017777 345 FQGFQVVSS 353 (366)
Q Consensus 345 f~~~~~~~~ 353 (366)
|+.+++...
T Consensus 170 F~~v~~~~~ 178 (261)
T 3ege_A 170 KRRVEAIPF 178 (261)
T ss_dssp CSEEEEEEC
T ss_pred CCceeEEEe
Confidence 998887665
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=140.99 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=115.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...++..+..+.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++++|+.+ +++.
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN 112 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC
Confidence 3345555544566789999999999999999999986 9999998 7777766542 459999999977 6554
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++..++|+++ ...+|++++++|+|||++++.+.......... .....+... ....++.++|.
T Consensus 113 ~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~ 180 (257)
T 3f4k_A 113 EELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCI 180 (257)
T ss_dssp TCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHH
T ss_pred CCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHH
Confidence 3 9999999999984 34789999999999999999997543322111 111222211 12356899999
Q ss_pred HHHHHcCCceeEEEECC
Q 017777 338 ALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~ 354 (366)
++|+++||+++++...+
T Consensus 181 ~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 181 DKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHTTEEEEEEEECC
T ss_pred HHHHHCCCeEEEEEECC
Confidence 99999999999987765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.5e-16 Score=135.61 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=108.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CEEEeccccccC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DAIFIKWICHDW 272 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~ 272 (366)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 45689999999999999999986 568999998 8888877654 689999999987 66543 999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
++. ..+|++++++|+|||++++.+......... . ........ ......++.+++.++++++||++++...
T Consensus 130 ~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~----~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLKSDGYACIAILGPTAKPRE---N----SYPRLYGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG---G----GGGGGGTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh---h----hhhhhccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 765 478999999999999999988644332110 0 01101100 1134457899999999999999988764
Q ss_pred C
Q 017777 353 S 353 (366)
Q Consensus 353 ~ 353 (366)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=142.63 Aligned_cols=151 Identities=17% Similarity=0.075 Sum_probs=115.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~- 260 (366)
.++..+..+.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 44554443567789999999999999999988 7889999998 7777766542 569999999987 65543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++..++|+++ ...+|++++++|+|||++++.+.......... ...+.+... ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMDA---YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 9999999999983 35789999999999999999998654332211 111222111 2245689999999
Q ss_pred HHHcCCceeEEEECC
Q 017777 340 AKAAGFQGFQVVSSA 354 (366)
Q Consensus 340 l~~aGf~~~~~~~~~ 354 (366)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999988765
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=138.23 Aligned_cols=140 Identities=17% Similarity=0.200 Sum_probs=108.4
Q ss_pred CCCeEEEEeCCc---cHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCCC------------CC--
Q 017777 201 GLNSVVDVGGGI---GATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFVS------------VP-- 258 (366)
Q Consensus 201 ~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~------------~~-- 258 (366)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++++|+.++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 458999999999 999888888899999999998 888887764 36899999999752 22
Q ss_pred CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 259 KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
..|+|++..+||++++++...+|++++++|+|||+|++.+...+. .... ....+.+.... .....++.+++.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~~---~~~~~~~~~~~-~~~~~~s~~ei~~ 229 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPAQ---QKLARITRENL-GEGWARTPEEIER 229 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHHH---HHHHHHHHHHH-SCCCCBCHHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHHH---HHHHHHHHhcC-CCCccCCHHHHHH
Confidence 349999999999999877789999999999999999999976532 1111 11222222221 2456689999999
Q ss_pred HHHHcCCceeE
Q 017777 339 LAKAAGFQGFQ 349 (366)
Q Consensus 339 ll~~aGf~~~~ 349 (366)
+| .||++++
T Consensus 230 ~l--~G~~l~~ 238 (274)
T 2qe6_A 230 QF--GDFELVE 238 (274)
T ss_dssp TT--TTCEECT
T ss_pred Hh--CCCeEcc
Confidence 99 5998764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=142.05 Aligned_cols=215 Identities=10% Similarity=-0.049 Sum_probs=138.9
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhcCCCCC
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNEDGV 123 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~~~~~~ 123 (366)
++|..| . +|.|+.|||+.+++ +++.+++||++|.+.|+++.. ++ |++|+.+..++...+..
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~~ 107 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGIG 107 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTCC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCcc
Confidence 789999 5 38999999999999 999999999999999999852 34 99999877544322211
Q ss_pred ChhHHH-Hhhc-----ChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhcc
Q 017777 124 TLSDLC-LMNQ-----DKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYK 197 (366)
Q Consensus 124 ~~~~~~-~~~~-----~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~ 197 (366)
+..+.+ .... ...+...|..+.+.++....+. ..+++. ...++. .... .. .... ..
T Consensus 108 ~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~-----~~~~~~--~~~~--------~l-~~~~-~~ 169 (373)
T 2qm3_A 108 KRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-HEFDQA-----YVTPET--TVAR--------VI-LMHT-RG 169 (373)
T ss_dssp CCCC------------CGGGHHHHHHHHHHHTTCCCCC-GGGTCC-----CBCHHH--HHHH--------HH-HHHH-TT
T ss_pred ccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-hhcCCe-----ecCHHH--HHHH--------HH-HHhh-cC
Confidence 111111 0000 0111223445555555432211 111110 001111 0001 00 0111 11
Q ss_pred CCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-----CCEEEe
Q 017777 198 GFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-----GDAIFI 265 (366)
Q Consensus 198 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-----~D~i~~ 265 (366)
..++.+|||+| |+|.++..++...++.+++++|+ +.+++.++++ .+++++.+|+.++.|. .|+|++
T Consensus 170 -~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 -DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp -CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred -CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence 22468999999 99999999999888789999998 8888877653 3799999999874432 399999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
...++.. ....+|+++.++|+|||++++.+..
T Consensus 248 ~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 248 DPPETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCCCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 8776643 2478999999999999976555543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=144.62 Aligned_cols=174 Identities=12% Similarity=0.126 Sum_probs=119.1
Q ss_pred hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCC-
Q 017777 187 ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFV- 255 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~- 255 (366)
.....++..++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+
T Consensus 70 ~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34555666664 2 3449999999999999999986 568999998 8888777642 579999999987
Q ss_pred CCCCC-CEEEe-ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchh---------hh-hhh--------
Q 017777 256 SVPKG-DAIFI-KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLA---------SK-VVI-------- 315 (366)
Q Consensus 256 ~~~~~-D~i~~-~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~---------~~-~~~-------- 315 (366)
+.+.. |+|++ ..++|++++++...+|++++++|+|||+|++.....+........ .. ...
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55544 98886 477888887778899999999999999999977543211000000 00 000
Q ss_pred -hcchhhHh----------hCCCCccCCHHHHHHHHHHcCCceeEEEECC------CceeEEEEEe
Q 017777 316 -HVDCIMLA----------HNPGGKERTEQEFRALAKAAGFQGFQVVSSA------FNTYIMEFLK 364 (366)
Q Consensus 316 -~~~~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~k 364 (366)
...+.... .....+.++.++|.++|+++||+++++.+.. ....++|+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 00000000 0001124699999999999999999998865 2356777764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-16 Score=138.78 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=105.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-C-CceEEEccCCCCCCC-C-CEEEeccccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-P-GVEHVGGDMFVSVPK-G-DAIFIKWICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~D~~~~~~~-~-D~i~~~~~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. . +++++++|+.+..+. . |+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999998766 6889997 7787776643 2 899999998774333 3 99999999999987
Q ss_pred HHHHHHHHHHH-HhCCCCcEEEEEccccCCCCCCchhhhhhhhcch--------hhHhhCCCCccCCHHHHHHHHHHcCC
Q 017777 275 EHCVKFLKNCY-EALPVNGKVIVAESILPVTPDTSLASKVVIHVDC--------IMLAHNPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 275 ~~~~~~L~~~~-~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~t~~e~~~ll~~aGf 345 (366)
. ..+|++++ ++|||||++++.++..... .......... ...........++.++|.++|+++||
T Consensus 119 ~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 P--VALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp H--HHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 6 48899999 9999999999987643221 0000000000 00001123456799999999999999
Q ss_pred ceeEEEE
Q 017777 346 QGFQVVS 352 (366)
Q Consensus 346 ~~~~~~~ 352 (366)
+++++..
T Consensus 192 ~~~~~~~ 198 (250)
T 2p7i_A 192 QVTYRSG 198 (250)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9988764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=141.05 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=113.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D 261 (366)
.+.+.+....+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 44544433567899999999999999999999984 89999998 7777766532 379999999987 55544 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc-----C---CCCCCchhhhhhhhcchhhHh-hCCCCccCC
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL-----P---VTPDTSLASKVVIHVDCIMLA-HNPGGKERT 332 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t 332 (366)
+|++..++|++++.. .+|++++++|+|||++++.++.. . ++...........+..+.... ...+....+
T Consensus 92 ~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 999999999998764 88999999999999999998651 1 111100000011111111100 012344556
Q ss_pred HHHHHHHHHHcCCceeEEEEC
Q 017777 333 EQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 333 ~~e~~~ll~~aGf~~~~~~~~ 353 (366)
..++.++|+++||+.+++...
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEc
Confidence 778999999999999877443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=140.46 Aligned_cols=138 Identities=18% Similarity=0.279 Sum_probs=109.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCC--CCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPK--GDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~--~D~i~~~~~lh 270 (366)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+. .|+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999988876 558999998 8887776542 258899999876 5544 39999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
++++++...+|++++++|+|||++++.+...... . .++. ......++.++|.++|+++||++++.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998888899999999999999999998765441 0 1110 01233458999999999999999988
Q ss_pred EECC
Q 017777 351 VSSA 354 (366)
Q Consensus 351 ~~~~ 354 (366)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-16 Score=136.67 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=106.1
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC-C-CEEEecccccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK-G-DAIFIKWICHD 271 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~-~-D~i~~~~~lh~ 271 (366)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++++|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999998876 6778999998 7777766542 3599999999883333 3 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+++++...+|++++++|+|||++++.+......... ....++.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 997778899999999999999999987654332111 1112578999999999999999887
Q ss_pred ECC
Q 017777 352 SSA 354 (366)
Q Consensus 352 ~~~ 354 (366)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 764
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=134.41 Aligned_cols=160 Identities=17% Similarity=0.125 Sum_probs=108.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---CCceEEEccCCC-CCCCC--CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---PGVEHVGGDMFV-SVPKG--DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~ 262 (366)
+.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 34555554 45678999999999999999988732 28999998 7887776543 479999999877 55433 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC--CCCCCchhh--------hhhhhc-----chhhHhhCCC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP--VTPDTSLAS--------KVVIHV-----DCIMLAHNPG 327 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~--~~~~~~~~~--------~~~~~~-----~~~~~~~~~~ 327 (366)
|++.+++|++++. ..+|++++++|+|||++++...... ......+.. .....+ ..........
T Consensus 111 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (243)
T 3bkw_A 111 AYSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVV 188 (243)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCC
T ss_pred EEEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceE
Confidence 9999999998754 5889999999999999999764211 000000000 000000 0000000012
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
...++.++|.++|+++||+++++...
T Consensus 189 ~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 189 KHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEeccHHHHHHHHHHcCCEeeeeccC
Confidence 23368999999999999999988764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=145.00 Aligned_cols=144 Identities=20% Similarity=0.294 Sum_probs=110.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC--------------CCceEEEccCCC-------C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF--------------PGVEHVGGDMFV-------S 256 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~-------~ 256 (366)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356899999999999999999987 7889999998 8888777643 689999999976 4
Q ss_pred CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHH
Q 017777 257 VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQ 334 (366)
Q Consensus 257 ~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 334 (366)
++.. |+|+++.++|++++. ..+|++++++|||||+|++.+...+..... .. ......... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~~-~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLSE-----AA-QQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCCH-----HH-HHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccCH-----hH-hhhHHHhhc-ccccCCCHH
Confidence 4443 999999999999875 588999999999999999998765432111 00 111111111 234567899
Q ss_pred HHHHHHHHcCCceeEEEE
Q 017777 335 EFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~~~ 352 (366)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999876544
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=136.09 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=112.6
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hh------HHhhCCCC-------CCceEEEcc-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PH------VIQDAPAF-------PGVEHVGGD-M 253 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~~v~~~~~D-~ 253 (366)
..+++.++ ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++. ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35566665 6678899999999999999999986 7789999998 43 66655432 579999998 4
Q ss_pred CC---CCCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC---
Q 017777 254 FV---SVPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN--- 325 (366)
Q Consensus 254 ~~---~~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 325 (366)
.. +++. .|+|++.+++|++++.+ .+++.++++++|||++++.+...+..................+....
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 3343 39999999999998875 47888888888899999999876543211100000001110010000
Q ss_pred CC--CccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 326 PG--GKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 326 ~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
.. ...++.++|.++++++||++++....
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01 24579999999999999999887665
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=127.45 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=112.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC--CEEEe
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG--DAIFI 265 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~ 265 (366)
.++..+ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455544 356789999999999999999986 568999998 7777777643 679999999987 55533 99999
Q ss_pred c-cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 266 K-WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 266 ~-~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
. .++|++++++...+|++++++|+|||++++.... ...++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~---------------------------~~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA---------------------------GRGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------------------------TSSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------------------------CCCcCHHHHHHHHHHcC
Confidence 8 8999988888889999999999999999986431 11256889999999999
Q ss_pred CceeEEEEC--------CCceeEEEEEe
Q 017777 345 FQGFQVVSS--------AFNTYIMEFLK 364 (366)
Q Consensus 345 f~~~~~~~~--------~~~~~vie~~k 364 (366)
|++++.... .....++.++|
T Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~v~~k 194 (195)
T 3cgg_A 167 LELENAFESWDLKPFVQGSEFLVAVFTK 194 (195)
T ss_dssp EEEEEEESSTTCCBCCTTCSEEEEEEEE
T ss_pred CEEeeeecccccCcCCCCCcEEEEEEec
Confidence 999887654 13445555555
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=131.74 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=103.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCC-CCC--CCCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFV-SVP--KGDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~--~~D~i 263 (366)
..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++. .+++++.+|+.. +.+ ..|+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34568999999999999999999888889999998 7787766542 279999999865 333 24999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH----HH
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR----AL 339 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~l 339 (366)
++..++|++++++...+|++++++|||||.+++....... ..+.......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKFANLPAGKLRH-KDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHTC------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhhcccccccccc-cccccccCHHHHHHHHHHH
Confidence 9999999999888889999999999999977765542100 0000000000000 1123446899999 89
Q ss_pred HHHcCCceeE
Q 017777 340 AKAAGFQGFQ 349 (366)
Q Consensus 340 l~~aGf~~~~ 349 (366)
++++||+++.
T Consensus 179 ~~~~Gf~v~~ 188 (217)
T 3jwh_A 179 TERFAYNVQF 188 (217)
T ss_dssp HHHSSEEEEE
T ss_pred HHHcCceEEE
Confidence 9999998643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=131.23 Aligned_cols=148 Identities=15% Similarity=0.069 Sum_probs=106.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCC-CCCCC--CEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFV-SVPKG--DAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~~~--D~i~ 264 (366)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.+ +++.. |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45789999999999999999987 668999998 7777665431 257999999987 55543 9999
Q ss_pred eccccccCChH-HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC--------------CCCc
Q 017777 265 IKWICHDWSDE-HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN--------------PGGK 329 (366)
Q Consensus 265 ~~~~lh~~~~~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 329 (366)
+..++|++++. +...+|++++++|+|||++++.+......... . .......+...... ....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 99999999764 46689999999999999999998765332100 0 00000000000000 0013
Q ss_pred cCCHHHHHHHHHHcCCceeEEEE
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
.++.++|.++|+++||+++++..
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEe
Confidence 57999999999999999988754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-15 Score=131.12 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=110.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-CEEEecc-cccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-DAIFIKW-ICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~-~lh~ 271 (366)
...+|||||||+|.++..+++. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 4589999999999999998876 68999998 8888776542 579999999877 55544 9999986 9988
Q ss_pred C-ChHHHHHHHHHHHHhCCCCcEEEEEcccc-------CCC-----CCCchh--h------hhhhhcchhhHhhCCCC--
Q 017777 272 W-SDEHCVKFLKNCYEALPVNGKVIVAESIL-------PVT-----PDTSLA--S------KVVIHVDCIMLAHNPGG-- 328 (366)
Q Consensus 272 ~-~~~~~~~~L~~~~~~L~pgG~lli~e~~~-------~~~-----~~~~~~--~------~~~~~~~~~~~~~~~~~-- 328 (366)
+ +.++...+|++++++|+|||++++.-... +.. ...... . .......+.+.....++
T Consensus 110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRY 189 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCE
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCce
Confidence 8 45667899999999999999998732211 000 000000 0 00000000010000011
Q ss_pred ---------ccCCHHHHHHHHHHcCCceeEEEEC--------CCceeEEEEEec
Q 017777 329 ---------KERTEQEFRALAKAAGFQGFQVVSS--------AFNTYIMEFLKS 365 (366)
Q Consensus 329 ---------~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vie~~k~ 365 (366)
+.++.+++.++|+++||+++++... .....++.++|.
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 190 DRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred EEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 3579999999999999999998764 245567888874
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=136.76 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=111.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC-CEEEec
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG-DAIFIK 266 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~ 266 (366)
.++..+. ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56678999999999999999998 7889999998 8888777643 789999999987 55444 999999
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh------hCCCCccCCHHHHHHHH
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA------HNPGGKERTEQEFRALA 340 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~t~~e~~~ll 340 (366)
+++|++++.. .+|++++++|+|||++++........ .. ............ .......++.++|.++|
T Consensus 125 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKEPE--AAIASIHQALKSGGRFVAEFGGKGNI---KY--ILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECTTTT---HH--HHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcCHH--HHHHHHHHhcCCCcEEEEEecCCcch---HH--HHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 9999988754 78999999999999999976543221 00 000011100000 00012346899999999
Q ss_pred HHcCCceeEEEEC
Q 017777 341 KAAGFQGFQVVSS 353 (366)
Q Consensus 341 ~~aGf~~~~~~~~ 353 (366)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999998876543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=138.37 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=110.4
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-C-CCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-S-VPK 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~~~ 259 (366)
..++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555554 23579999999999999999987 678999998 8788776542 579999999987 3 343
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHh-------hCCCCcc
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLA-------HNPGGKE 330 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 330 (366)
. |+|++.+++|++++. ..+|++++++|+|||++++.+....... ............... .......
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 999999999999876 4789999999999999999876432100 000000000000000 0012345
Q ss_pred CCHHHHHHHHHHcCCceeEEEECC
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
++.++|.++|+++||+++++....
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 789999999999999999887653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=128.50 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=108.9
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC-C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-D 261 (366)
.+.+.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444444 445679999999999999999986 568999998 7777776542 479999999887 55333 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+|++..++|++++++...+|++++++|+|||++++++.......... ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999877778999999999999999999887654431110 01233467889999998
Q ss_pred HcCCceeEEEEC
Q 017777 342 AAGFQGFQVVSS 353 (366)
Q Consensus 342 ~aGf~~~~~~~~ 353 (366)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 998876543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=133.05 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=112.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-CEEEecc-cccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-DAIFIKW-ICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~-~lh~ 271 (366)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+|++.+ ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999987 468999998 8888776643 279999999887 55544 9999998 9999
Q ss_pred CCh-HHHHHHHHHHHHhCCCCcEEEEEccccCC----CCCCch---hhh----h-------hhhcchhhHhhCC------
Q 017777 272 WSD-EHCVKFLKNCYEALPVNGKVIVAESILPV----TPDTSL---ASK----V-------VIHVDCIMLAHNP------ 326 (366)
Q Consensus 272 ~~~-~~~~~~L~~~~~~L~pgG~lli~e~~~~~----~~~~~~---~~~----~-------~~~~~~~~~~~~~------ 326 (366)
+++ ++...+|++++++|+|||++++....... -..... ... + .....+.+.....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 844 56789999999999999999984321100 000000 000 0 0000000000000
Q ss_pred ----CCccCCHHHHHHHHHHcCCceeEEEEC--------CCceeEEEEEec
Q 017777 327 ----GGKERTEQEFRALAKAAGFQGFQVVSS--------AFNTYIMEFLKS 365 (366)
Q Consensus 327 ----~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vie~~k~ 365 (366)
..+.++.++|.++|+++||+++++... .....++.++|+
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 124569999999999999999998764 235567888875
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-15 Score=128.68 Aligned_cols=137 Identities=20% Similarity=0.154 Sum_probs=101.5
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHHH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHC 277 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~ 277 (366)
..+|||||||+|.++..++.. +++|. +.+++.+++. +++++.+|+.+ +++.. |+|++.+++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 689999999999999988764 88897 8888877655 89999999877 55543 999999999998765
Q ss_pred HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 278 VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 278 ~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
..+|+++.++|+|||++++.+...... .......... ..........++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNKE-KSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTTT-C-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccH-----HHHHHHHHhc-CcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 478999999999999999987643221 0000000000 000001245579999999999999999887664
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=135.99 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=109.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC--CEEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG--DAIF 264 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~--D~i~ 264 (366)
..++..+. .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + +.. |+|+
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY 100 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence 35666665 56678999999999999999999999999999998 888887764 3789999999987 5 433 9999
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcc--hhhHhh----CCCCccCCHHHHHH
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD--CIMLAH----NPGGKERTEQEFRA 338 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~t~~e~~~ 338 (366)
+.+++|++++. ..+|++++++|+|||++++........ ........... .+.... ......++.++|.+
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 99999999764 478999999999999999987532211 10000000000 000000 01234578999999
Q ss_pred HHHHcCCce
Q 017777 339 LAKAAGFQG 347 (366)
Q Consensus 339 ll~~aGf~~ 347 (366)
+|+++||++
T Consensus 176 ~l~~aGf~v 184 (259)
T 2p35_A 176 ALSPKSSRV 184 (259)
T ss_dssp HHGGGEEEE
T ss_pred HHHhcCCce
Confidence 999999974
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=136.24 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=109.1
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---CCCceEEEccCCC-CCCCC--CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---FPGVEHVGGDMFV-SVPKG--DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~~~~--D~ 262 (366)
..+...++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++.. |+
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 34555444 446789999999999999999998654 8999998 778777654 3689999999977 66543 99
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC------------CCCCCchhhhhhhhcc-----hhhHhhC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP------------VTPDTSLASKVVIHVD-----CIMLAHN 325 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~------------~~~~~~~~~~~~~~~~-----~~~~~~~ 325 (366)
|++..++|++++. ..+|++++++|+|||++++...... ......... ....++ .......
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 188 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWP-VDRYFNESMRTSHFLGED 188 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEE-ECCTTCCCEEEEEETTEE
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEE-eccccccceEEEeecccc
Confidence 9999999999664 5889999999999999999743210 000000000 000000 0000000
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 326 PGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 326 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
.....+|.++|.++|+++||+++++...
T Consensus 189 ~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 189 VQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred CccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 0111249999999999999999988754
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-15 Score=127.19 Aligned_cols=133 Identities=18% Similarity=0.152 Sum_probs=103.6
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEec
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIK 266 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~ 266 (366)
..++..+....+..+|||||||+|.++..+. .+++++|+.+. +++++.+|+.+ +++.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455544434566899999999999988772 57899997332 68899999887 66543 999999
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+++|+ ++ ...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~-~~--~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-TN--IRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-SC--HHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc-cC--HHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 43 45889999999999999999874311 12688999999999999
Q ss_pred eeEEEECCCceeEEEEEec
Q 017777 347 GFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~~~~vie~~k~ 365 (366)
++........+.++.++|.
T Consensus 173 ~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp EEEEECCSTTCEEEEEEEC
T ss_pred EEEEecCCCeEEEEEEEec
Confidence 9887766677788888875
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=132.33 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=102.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCC-CCCCC--CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFV-SVPKG--DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~~~~--D~i~~~~~l 269 (366)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 556789999999999999999986 568999997 777776643 3689999999977 55543 999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC---CCccCCHHHHHHHHHHcCCc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP---GGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 346 (366)
|++++. ..+|++++++|+|||++++. ...++ .............+......+ ....++.+++.++|+++||+
T Consensus 115 ~~~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 999864 47899999999999999988 21111 011000000011111110000 11345789999999999999
Q ss_pred eeEEE
Q 017777 347 GFQVV 351 (366)
Q Consensus 347 ~~~~~ 351 (366)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 77653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-16 Score=139.96 Aligned_cols=145 Identities=16% Similarity=0.229 Sum_probs=103.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------------------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------------------------------------ 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 243 (366)
...+|||||||+|.++..+++.++..+++++|+ +.+++.+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 568999999999999999999999999999998 7777766432
Q ss_pred ----------------------------CCceEEEccCCCCC------CC--CCEEEeccccccC----ChHHHHHHHHH
Q 017777 244 ----------------------------PGVEHVGGDMFVSV------PK--GDAIFIKWICHDW----SDEHCVKFLKN 283 (366)
Q Consensus 244 ----------------------------~~v~~~~~D~~~~~------~~--~D~i~~~~~lh~~----~~~~~~~~L~~ 283 (366)
.+|+|+++|+.... +. .|+|++..+++++ +++....+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998622 22 3999999999665 66778899999
Q ss_pred HHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHH--cCCceeEEEEC
Q 017777 284 CYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKA--AGFQGFQVVSS 353 (366)
Q Consensus 284 ~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 353 (366)
++++|+|||+|++.......... ........... ........+++.++|.+ +||+.+++...
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~------~~~~~~~~~~~--~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGK------RKTLTETIYKN--YYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHT------TTTSCHHHHHH--HHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhh------hhcccHHHHhh--hhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999985432211000 00000000000 01223447899999999 99988877654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=131.99 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=107.9
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC----C-CC-C-CCE
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV----S-VP-K-GDA 262 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~----~-~~-~-~D~ 262 (366)
.++..+. ...+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+...|+.+ + .+ . .|+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 3444444 345689999999999999999987 668999998 8888888877888888888654 1 12 2 399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC-----CCCccCCHHHHH
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN-----PGGKERTEQEFR 337 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~~ 337 (366)
|++.+++| +++. ..+|++++++|+|||++++.+............. ........... .....++.++|.
T Consensus 120 v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD---GWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC---EEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCcccccc---ccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 5544 4889999999999999999887543322110000 00000000000 011345899999
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998765
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=132.28 Aligned_cols=147 Identities=13% Similarity=0.117 Sum_probs=106.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---CCCceEEEccCCC-CCCC-------CCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---FPGVEHVGGDMFV-SVPK-------GDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~~~-------~D~i~~~ 266 (366)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++++|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999887 7889997 778776654 2589999999987 3221 4999999
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh-----cchhhHh-hCCCCccCCHHHHHHHH
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH-----VDCIMLA-HNPGGKERTEQEFRALA 340 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~t~~e~~~ll 340 (366)
.++|++++++...+|++++++|||||++++.+...++.. ........ ..+.... .......++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999987788999999999999999999987544310 00000000 0000000 00112236899999999
Q ss_pred HHcCCceeEEEE
Q 017777 341 KAAGFQGFQVVS 352 (366)
Q Consensus 341 ~~aGf~~~~~~~ 352 (366)
+||++++...
T Consensus 209 --aGf~~~~~~~ 218 (245)
T 3ggd_A 209 --PDFEILSQGE 218 (245)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCEEEeccc
Confidence 9999987544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-15 Score=131.16 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=84.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
...+|||||||+|.++..|++.+ .+++++|+ +.+++.+++.++++++++|+.+ +++++ |+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence 45789999999999999999865 47899998 8999999988999999999987 77765 999999999987643
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.++++++++|||||+|+++....
T Consensus 116 --~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 116 --RFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp --HHHHHHHHHEEEEEEEEEEEECC
T ss_pred --HHHHHHHHHcCCCCEEEEEECCC
Confidence 68999999999999999987543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-15 Score=129.18 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=107.6
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC---CCCCC--CEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV---SVPKG--DAI 263 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i 263 (366)
+.+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +++.. |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555443 45689999999999999999987 4 79999998 78887776432 4788889865 33433 999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc-chhhH-----hhCCCCccCCHHHHH
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV-DCIML-----AHNPGGKERTEQEFR 337 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~t~~e~~ 337 (366)
++.+++|++++.. .+|++++++|+|||++++..+..... ....... ..+.. ........++.++|.
T Consensus 98 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (230)
T 3cc8_A 98 IFGDVLEHLFDPW--AVIEKVKPYIKQNGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEML 169 (230)
T ss_dssp EEESCGGGSSCHH--HHHHHTGGGEEEEEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHH
T ss_pred EECChhhhcCCHH--HHHHHHHHHcCCCCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCcceEEEecHHHHH
Confidence 9999999998764 88999999999999999987543211 0000000 00000 000122457999999
Q ss_pred HHHHHcCCceeEEEEC
Q 017777 338 ALAKAAGFQGFQVVSS 353 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~ 353 (366)
++|+++||+++++...
T Consensus 170 ~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 170 RMFLKAGYSISKVDRV 185 (230)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHcCCeEEEEEec
Confidence 9999999999887764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-15 Score=130.04 Aligned_cols=151 Identities=9% Similarity=-0.059 Sum_probs=105.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC--CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG--DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~~~l 269 (366)
..+..+|||||||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +++.. |+|++.+++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345689999999999985555443 5679999998 7887776542 579999999987 65543 999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
|+++.++...+|++++++|+|||++++.+...++.+...........+.............++.+++.++|.++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987788899999999999999999998765543211000000000000000000012456899999999999997654
Q ss_pred E
Q 017777 350 V 350 (366)
Q Consensus 350 ~ 350 (366)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=127.68 Aligned_cols=132 Identities=10% Similarity=-0.070 Sum_probs=101.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------------------CCCceEEEccCCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------------------FPGVEHVGGDMFV 255 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~~ 255 (366)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 45689999999999999999985 568999998 888776632 2578999999988
Q ss_pred -CCC--C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccC
Q 017777 256 -SVP--K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKER 331 (366)
Q Consensus 256 -~~~--~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (366)
+.+ . .|+|++..+||++++++...++++++++|||||+++++....+... . .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~-------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------H-------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------C-------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------C-------CCCCCCC
Confidence 443 2 3999999999999887778999999999999999987655432210 0 0011125
Q ss_pred CHHHHHHHHHHcCCceeEEEE
Q 017777 332 TEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 332 t~~e~~~ll~~aGf~~~~~~~ 352 (366)
+.+++.++|.. +|+++....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 78999999987 598876544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=130.71 Aligned_cols=163 Identities=20% Similarity=0.150 Sum_probs=108.8
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC--------CCC
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA--------FPG 245 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ 245 (366)
.|.+....+.......+.... ..+..+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++ ..+
T Consensus 13 ~y~~~rp~y~~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 344433344443444444432 3467899999999999999999887 8899999998 888877754 368
Q ss_pred ceEEEccCCC-CCCC------C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 246 VEHVGGDMFV-SVPK------G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 246 v~~~~~D~~~-~~~~------~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
++++++|+.+ +++. + |+|++..++|++ + ...+|++++++|+|||+|++.+...+........ ...
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~---~~~ 164 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEF---DDL 164 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGG---TTH
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcHHH---HHH
Confidence 9999999987 5443 3 999999999998 3 4588999999999999999955432211111100 111
Q ss_pred cchhhH---hhCCCCccCCHHHHHHHHHHcCCc
Q 017777 317 VDCIML---AHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 317 ~~~~~~---~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+.-+.. ...+--.....+.+.++++++||.
T Consensus 165 ~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 165 MIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp HHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 111110 000001113566789999999993
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-15 Score=134.31 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=84.8
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCC-C---
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV-S--- 256 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~-~--- 256 (366)
+...++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.+ +
T Consensus 49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHH-HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhc-ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 333333 345689999999999999999987 448999998 7888777431 578899999877 5
Q ss_pred CCCC--CEEEec-cccccCCh-----HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 VPKG--DAIFIK-WICHDWSD-----EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 ~~~~--D~i~~~-~~lh~~~~-----~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++.. |+|++. +++|++++ ++...+|++++++|||||++++...
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4533 999998 89999988 6778999999999999999998764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=129.45 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=108.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C------------------------------
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P------------------------------ 244 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------ 244 (366)
.+..+|||||||+|.++..++...+ .+++++|+ +.+++.+++. .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999998887655 47999998 7777766431 1
Q ss_pred -Cc-eEEEccCCC--CCCC---C--CEEEeccccccCCh--HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhh
Q 017777 245 -GV-EHVGGDMFV--SVPK---G--DAIFIKWICHDWSD--EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKV 313 (366)
Q Consensus 245 -~v-~~~~~D~~~--~~~~---~--D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 313 (366)
++ +++.+|+.+ +.+. . |+|++..++|+++. ++...+|++++++|+|||++++.+......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------- 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY--------- 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE---------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce---------
Confidence 17 899999987 2233 3 99999999994432 356789999999999999999988543210
Q ss_pred hhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC----------CceeEEEEEecC
Q 017777 314 VIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA----------FNTYIMEFLKSA 366 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~----------~~~~vie~~k~~ 366 (366)
....+.. ......+.++|.++|+++||+++++.... ....++.++|.+
T Consensus 205 ~~~~~~~-----~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 262 (265)
T 2i62_A 205 YMIGEQK-----FSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPG 262 (265)
T ss_dssp EEETTEE-----EECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC
T ss_pred EEcCCcc-----ccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccc
Confidence 0000000 01234578999999999999998877543 245567777753
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-14 Score=130.06 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=93.9
Q ss_pred CCCeEEEEeCCccHHHH----HHHHhCCCCeE--EEecc-hhHHhhCCCC-------CCceE--EEccCCC-C------C
Q 017777 201 GLNSVVDVGGGIGATLN----MIISKYPSIKG--INFDL-PHVIQDAPAF-------PGVEH--VGGDMFV-S------V 257 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~~v~~--~~~D~~~-~------~ 257 (366)
+..+|||||||+|.++. .++.++|++.+ +++|. +.|++.+++. +++.+ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45799999999997654 44556688854 99997 8887765432 34444 3444432 1 2
Q ss_pred CC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC-CCCccCCHH
Q 017777 258 PK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN-PGGKERTEQ 334 (366)
Q Consensus 258 ~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~ 334 (366)
+. .|+|++.++||++++.+ .+|++++++|||||++++.+...+. .. ... ...+...... .....++.+
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~----~~-~~~--~~~~~~~~~~~~~~~~~~~~ 202 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS----GW-DKL--WKKYGSRFPQDDLCQYITSD 202 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS----HH-HHH--HHHHGGGSCCCTTCCCCCHH
T ss_pred CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecCCc----cH-HHH--HHHHHHhccCCCcccCCCHH
Confidence 33 39999999999998764 7899999999999999998653211 11 100 0011000000 012456899
Q ss_pred HHHHHHHHcCCceeEE
Q 017777 335 EFRALAKAAGFQGFQV 350 (366)
Q Consensus 335 e~~~ll~~aGf~~~~~ 350 (366)
+|.++|+++||+++..
T Consensus 203 ~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 203 DLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHCCCceEEE
Confidence 9999999999998764
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-13 Score=119.20 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=113.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D 261 (366)
..++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |
T Consensus 31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 34454443 445689999999999999999985 568999998 8888776542 479999999987 55544 9
Q ss_pred EEEec-cccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc--CCCCCCc-hh-------------hhh---hhhcchh-
Q 017777 262 AIFIK-WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL--PVTPDTS-LA-------------SKV---VIHVDCI- 320 (366)
Q Consensus 262 ~i~~~-~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~--~~~~~~~-~~-------------~~~---~~~~~~~- 320 (366)
+|++. ..+|+++.++...+|++++++|+|||.+++.-+.. ....... +. ... .....+.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKR 187 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeecccccccceeehee
Confidence 99986 56677777788899999999999999998743321 0000000 00 000 0000000
Q ss_pred -hHhhCCCC-----------ccCCHHHHHHHHHHcCCceeEEEEC-------CCceeEEEEEec
Q 017777 321 -MLAHNPGG-----------KERTEQEFRALAKAAGFQGFQVVSS-------AFNTYIMEFLKS 365 (366)
Q Consensus 321 -~~~~~~~~-----------~~~t~~e~~~ll~~aGf~~~~~~~~-------~~~~~vie~~k~ 365 (366)
......+| +.++.+++. +|.++||++++++.. .....++.++|+
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~~~~~~~r~~~va~k~ 250 (252)
T 1wzn_A 188 LVQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAK 250 (252)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSSCCTTCCEEEEEEECC
T ss_pred eeeecccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccccCCCCceEEEEEEee
Confidence 00001122 357999997 899999999988653 145667788775
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=126.64 Aligned_cols=132 Identities=15% Similarity=0.100 Sum_probs=102.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-CEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-DAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~ 271 (366)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++++|+.+ +.+.. |+|++..++|+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMF 196 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhh
Confidence 35789999999999999999987 568999998 7777766542 279999999987 44433 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
++++....+|++++++|+|||++++......++.... ......++.+++.++++. |+++...
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC--CEEEEEE
Confidence 9988888999999999999999888776554321110 012334567889898864 8887764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=129.81 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=104.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----------------------------------
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------------------------------- 243 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 243 (366)
.+..+|||||||+|.++..++.... .+++++|+ +.+++.+++.
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4567999999999987765554321 26899998 8887765421
Q ss_pred CCce-EEEccCCC--CCC-----CCCEEEeccccccC-C-hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhh
Q 017777 244 PGVE-HVGGDMFV--SVP-----KGDAIFIKWICHDW-S-DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKV 313 (366)
Q Consensus 244 ~~v~-~~~~D~~~--~~~-----~~D~i~~~~~lh~~-~-~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 313 (366)
.++. ++.+|+.+ +++ ..|+|+++.+||+. + .++...+|++++++|||||++++.+......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~--------- 203 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS--------- 203 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE---------
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc---------
Confidence 0133 88999887 321 23999999999974 2 3566789999999999999999987543221
Q ss_pred hhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC----------CceeEEEEEec
Q 017777 314 VIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA----------FNTYIMEFLKS 365 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~----------~~~~vie~~k~ 365 (366)
....-. ......++.++|.++|+++||++++..... ..+.++.++|.
T Consensus 204 -~~~g~~----~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 204 -YMVGKR----EFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp -EEETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred -ceeCCe----EeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 000000 001223589999999999999998876532 25567778774
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=122.11 Aligned_cols=152 Identities=22% Similarity=0.261 Sum_probs=104.7
Q ss_pred HHHHHhccCCCCCCeEEEEeCCc--cHHHHHH-HHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCC--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGI--GATLNMI-ISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSV-- 257 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-- 257 (366)
...+..+..-.+..+|||||||+ +..+..+ .+..|+.+++++|. |.|++.+++. .+++++++|+.++.
T Consensus 67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI 146 (277)
T ss_dssp HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence 33444333123568999999997 3344444 44579999999998 9999888642 36899999998721
Q ss_pred ---C---C-CC-----EEEeccccccCChHH-HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh
Q 017777 258 ---P---K-GD-----AIFIKWICHDWSDEH-CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH 324 (366)
Q Consensus 258 ---~---~-~D-----~i~~~~~lh~~~~~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (366)
+ . .| +++++.+||++++++ ...+|++++++|+|||+|++.+...+..+ .......+.+...
T Consensus 147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-----~~~~~~~~~~~~~- 220 (277)
T 3giw_A 147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-----QEVGRVAREYAAR- 220 (277)
T ss_dssp HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-----HHHHHHHHHHHHT-
T ss_pred hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-----HHHHHHHHHHHhc-
Confidence 1 1 13 688999999999875 46899999999999999999987654321 0111112222211
Q ss_pred CCCCccCCHHHHHHHHHHcCCceeE
Q 017777 325 NPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 325 ~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
......||.+|+.++|. ||++++
T Consensus 221 g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 221 NMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TCCCCCCCHHHHHHTTT--TSEECT
T ss_pred CCCCccCCHHHHHHHhC--CCcccC
Confidence 11345689999999995 998653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-14 Score=134.06 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=106.9
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCC-----C-CCC-C
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMF-----V-SVP-K 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~-----~-~~~-~ 259 (366)
....++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++......+. . +++ .
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3456666666 667789999999999999999985 458999998 7888887754 3333332221 1 222 2
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
.|+|++.++|||+++. ..+|++++++|||||++++..+.... ......+.... ..+...++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~~~~~~~~~-~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGD---------IVAKTSFDQIF-DEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHH---------HHHHTCGGGCS-TTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHH---------hhhhcchhhhh-hhhhhcCCHHHHHH
Confidence 3999999999999864 58899999999999999997543211 00000010000 12445679999999
Q ss_pred HHHHcCCceeEEEECC
Q 017777 339 LAKAAGFQGFQVVSSA 354 (366)
Q Consensus 339 ll~~aGf~~~~~~~~~ 354 (366)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999887754
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-14 Score=129.66 Aligned_cols=154 Identities=18% Similarity=0.017 Sum_probs=106.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CC-CCC--CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SV-PKG--DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~-~~~--D~i~~~ 266 (366)
..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ ++ +.. |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999988775 4558999998 7777766542 368999999987 55 333 999999
Q ss_pred ccccc--CChHHHHHHHHHHHHhCCCCcEEEEEccccCCC---------CCCc---------hhhh-hhhhcchhhHhh-
Q 017777 267 WICHD--WSDEHCVKFLKNCYEALPVNGKVIVAESILPVT---------PDTS---------LASK-VVIHVDCIMLAH- 324 (366)
Q Consensus 267 ~~lh~--~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~---------~~~~---------~~~~-~~~~~~~~~~~~- 324 (366)
+++|+ .+.++...+|++++++|+|||++++........ .... ..+. ....+.+.....
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99988 566777899999999999999999987532110 0000 0000 000000000000
Q ss_pred -CCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 325 -NPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 325 -~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
......++.++|.++|+++||+++++...
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00123568999999999999999988664
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-13 Score=111.67 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=95.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCC--CCEEEeccccccCChH--
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPK--GDAIFIKWICHDWSDE-- 275 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~--~D~i~~~~~lh~~~~~-- 275 (366)
+..+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++++|+.++.+. .|+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 45699999999999999999876 8999998 888876 56899999999886553 3999999888865443
Q ss_pred -----HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 276 -----HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 276 -----~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
+...+++++.+.+ |||++++.+... ...+++.++++++||+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence 3457889999999 999999976321 13578899999999998877
Q ss_pred EECC
Q 017777 351 VSSA 354 (366)
Q Consensus 351 ~~~~ 354 (366)
....
T Consensus 147 ~~~~ 150 (170)
T 3q87_B 147 KVRK 150 (170)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 6653
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-13 Score=117.29 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=101.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh----CCCCCCceEEEccCCC-----CCCCC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD----APAFPGVEHVGGDMFV-----SVPKG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~~v~~~~~D~~~-----~~~~~-D~i~~~~ 267 (366)
+.+..+|||||||+|.++..+++.++..+++++|. +.+++. ++..+++.++.+|+.. +.+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988779999998 766654 3444789999999875 22223 9988
Q ss_pred ccccCChH-HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 268 ICHDWSDE-HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 268 ~lh~~~~~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
|++++. ....+|+++.++|+|||++++. ........... .. ....+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~---------~~---------~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD---------PK---------EIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC---------HH---------HHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC---------HH---------HhhHHHHH-HHHHCCCE
Confidence 444443 3457799999999999999997 21111100000 00 01246777 89999999
Q ss_pred eeEEEECCCc---eeEEEEEec
Q 017777 347 GFQVVSSAFN---TYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~~---~~vie~~k~ 365 (366)
.++....... ..++.++|+
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEEC
T ss_pred EEEEEccCCCccceEEEEEEeC
Confidence 9998887544 677788775
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=117.43 Aligned_cols=140 Identities=8% Similarity=0.019 Sum_probs=102.2
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC--C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK--G 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~--~ 260 (366)
..++..++ .. +|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++. .
T Consensus 22 ~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~f 95 (202)
T 2kw5_A 22 VSVANQIP---QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAW 95 (202)
T ss_dssp HHHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTC
T ss_pred HHHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCc
Confidence 34444443 34 9999999999999998885 568999998 7787777643 378999999987 5553 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++. +++++.++...+|++++++|+|||++++.+....... ...... ......++.+++.++|
T Consensus 96 D~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~l~~~l 160 (202)
T 2kw5_A 96 EGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ---------YNTGGP----KDLDLLPKLETLQSEL 160 (202)
T ss_dssp SEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG---------GTSCCS----SSGGGCCCHHHHHHHC
T ss_pred cEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc---------CCCCCC----CcceeecCHHHHHHHh
Confidence 999985 3455667788999999999999999999887543310 000000 0012357899999999
Q ss_pred HHcCCceeEEEE
Q 017777 341 KAAGFQGFQVVS 352 (366)
Q Consensus 341 ~~aGf~~~~~~~ 352 (366)
+ ||+++++..
T Consensus 161 ~--Gf~v~~~~~ 170 (202)
T 2kw5_A 161 P--SLNWLIANN 170 (202)
T ss_dssp S--SSCEEEEEE
T ss_pred c--CceEEEEEE
Confidence 9 999987654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=118.14 Aligned_cols=130 Identities=14% Similarity=0.043 Sum_probs=104.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCCC-CEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPKG-DAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-D~i~~~~~lh~ 271 (366)
.+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++. .+++++.+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999776 46679999998 7787776542 34999999998744444 99999887764
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
...+++++.++|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 35889999999999999999654321 25678899999999999988
Q ss_pred ECCCceeEEEEEe
Q 017777 352 SSAFNTYIMEFLK 364 (366)
Q Consensus 352 ~~~~~~~vie~~k 364 (366)
..+.+..++..++
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8877777777665
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-14 Score=123.88 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=82.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCCCCCC-C-CEEEecccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFVSVPK-G-DAIFIKWICHD 271 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~~~-~-D~i~~~~~lh~ 271 (366)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++++|+.+..+. . |+|++.+++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999875 47899998 777766543 35799999999873233 3 99999999999
Q ss_pred CCh-HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 272 WSD-EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 272 ~~~-~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+++ +....+|++++++|+|||++++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 986 4556899999999999999999765
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-14 Score=128.31 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=94.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C-------------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P------------------------------- 244 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------- 244 (366)
+..+|||||||+|.+. .++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5679999999999943 3444445569999998 8887755431 0
Q ss_pred -CceEEEccCCC--C-----CCC--CCEEEeccccccCChH--HHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhh
Q 017777 245 -GVEHVGGDMFV--S-----VPK--GDAIFIKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASK 312 (366)
Q Consensus 245 -~v~~~~~D~~~--~-----~~~--~D~i~~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 312 (366)
.++++.+|+.+ + ++. .|+|+++.+||+++.. +...+|++++++|||||+|++.+......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~-------- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-------- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE--------
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce--------
Confidence 13466668875 2 222 3999999999985433 56799999999999999999986432210
Q ss_pred hhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 313 VVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
....+. ......++.++|.++|+++||+++++..
T Consensus 222 -~~~~~~-----~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 222 -YLAGEA-----RLTVVPVSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp -EEETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred -EEcCCe-----eeeeccCCHHHHHHHHHHcCCeEEEeeE
Confidence 000000 0012346899999999999999887654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=112.99 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=97.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC---C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP---K 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---~ 259 (366)
..++..+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. ++++++.+|+.+..+ .
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 34555565 66788999999999999999999999999999998 8888777642 689999999876332 3
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.|+|++...++ +...+++++.++|+|||++++..... .+.+++.++
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~ 154 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEF 154 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHH
Confidence 49999988876 23588999999999999999965321 025677889
Q ss_pred HHHcCCc
Q 017777 340 AKAAGFQ 346 (366)
Q Consensus 340 l~~aGf~ 346 (366)
++++||.
T Consensus 155 l~~~g~~ 161 (204)
T 3e05_A 155 LEDHGYM 161 (204)
T ss_dssp HHHTTCE
T ss_pred HHHCCCc
Confidence 9999983
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=118.08 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=94.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh----CCC------CCCceEEEccCCC-CCCCC-CEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD----APA------FPGVEHVGGDMFV-SVPKG-DAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~D~~~-~~~~~-D~i~~ 265 (366)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++++|+.+ +++.. |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999998 765553 222 2589999999987 55533 66653
Q ss_pred cc---ccc--cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 266 KW---ICH--DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 266 ~~---~lh--~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
.. .+| ++++. ..+|++++++|||||++++......-.... . ...+ .......+..+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~---~~~~-----~~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV---P---EVGE-----HPEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC---G---GGTT-----CCCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc---c---cccc-----CCccchHHHHHHHHHHH
Confidence 22 221 33333 478999999999999999943321111000 0 0000 00011122345688899
Q ss_pred HHcCCceeEEEEC
Q 017777 341 KAAGFQGFQVVSS 353 (366)
Q Consensus 341 ~~aGf~~~~~~~~ 353 (366)
+++||++.++...
T Consensus 172 ~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 172 AEAGWKLADCRYL 184 (218)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCCceeeecc
Confidence 9999999887654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-13 Score=112.66 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=107.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C--CceEEEccCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P--GVEHVGGDMFVSVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~~~ 259 (366)
.+.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. . +++++.+|+.++.+.
T Consensus 41 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 41 TKILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 345566665 567789999999999999999887 678999998 7777766542 3 499999999875443
Q ss_pred -C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 -G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 -~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++...+|+ ..+....+++++.++|+|||++++...... ...++.
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 167 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLA 167 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHH
Confidence 3 99999888775 445667999999999999999999865321 023466
Q ss_pred HHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 338 ALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
+.+++. |..+++.....++.++.++|
T Consensus 168 ~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 168 KYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHH-hcceEEEecCCcEEEEEEee
Confidence 777777 66677777667778877776
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=125.83 Aligned_cols=113 Identities=13% Similarity=0.246 Sum_probs=90.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------------CCCceEEEcc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------------FPGVEHVGGD 252 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D 252 (366)
+..++..+. +.+..+|||||||+|..+..++...+..+++++|+ +.+++.|++ ..+|+++++|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 445666666 77889999999999999999998887667999998 666655542 2689999999
Q ss_pred CCC-CCC----CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCC
Q 017777 253 MFV-SVP----KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTP 305 (366)
Q Consensus 253 ~~~-~~~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~ 305 (366)
+++ +++ ..|+|+++++++. ++....|+++.+.|||||+|++.|.+.+.+.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAFG---PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTCC---HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEcccccC---chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 553 3599998877642 4556788999999999999999999887653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=119.58 Aligned_cols=148 Identities=14% Similarity=0.015 Sum_probs=95.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCC----
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVP---- 258 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~---- 258 (366)
...+++.+....+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++++|+.++++
T Consensus 18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 97 (215)
T 4dzr_A 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE 97 (215)
T ss_dssp HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh
Confidence 344555554225678999999999999999999999999999998 8888888754 168888888876433
Q ss_pred ---CCCEEEecccccc------CChHHH------------------HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh
Q 017777 259 ---KGDAIFIKWICHD------WSDEHC------------------VKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS 311 (366)
Q Consensus 259 ---~~D~i~~~~~lh~------~~~~~~------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~ 311 (366)
..|+|+++..+|. ++.+.. ..++++++++|+|||++++++...
T Consensus 98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------- 167 (215)
T 4dzr_A 98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---------- 167 (215)
T ss_dssp TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT----------
T ss_pred ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC----------
Confidence 2399999654433 222211 688999999999999966654311
Q ss_pred hhhhhcchhhHhhCCCCccCCHHHHHHHHH--HcCCceeEEEECC-CceeEEEEEec
Q 017777 312 KVVIHVDCIMLAHNPGGKERTEQEFRALAK--AAGFQGFQVVSSA-FNTYIMEFLKS 365 (366)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~vie~~k~ 365 (366)
...+++.++++ ++||..+++.... +...++.++|.
T Consensus 168 -------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 168 -------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp -------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred -------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 12567788888 9999988777754 45566666654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=116.39 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=97.6
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCC-eEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC--CEEEe
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSI-KGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG--DAIFI 265 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~ 265 (366)
++..+. .+..+|||||||+|.++..+ +. +++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++
T Consensus 29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence 444443 26789999999999998877 45 8999998 7888777643 689999999887 66543 99999
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcC
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAG 344 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 344 (366)
.+++|++++. ..+|++++++|+|||++++.+...... . ....................++.+++.++|+ |
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 102 FTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALSP----W-AALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp ESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTSH----H-HHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred cChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcCc----H-HHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9999999865 488999999999999999988643321 0 0000000000000001244579999999999 7
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-13 Score=115.44 Aligned_cols=146 Identities=12% Similarity=0.008 Sum_probs=91.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc--hhHHhhC---CCC------CCceEEEccCCC-CCCCCCEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL--PHVIQDA---PAF------PGVEHVGGDMFV-SVPKGDAIFIKW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~~------~~v~~~~~D~~~-~~~~~D~i~~~~ 267 (366)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.| ++. +++.++.+|+.+ +....|+|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4567999999999999999998889999999997 4454443 432 579999999875 221126555554
Q ss_pred ccccCChHH------HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 268 ICHDWSDEH------CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 268 ~lh~~~~~~------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+.+.|+... ...+|++++++|||||++++........ .. .+. ....... ........+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~--~~~--~~~~~~~----~~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EE--AEI--KKRGLPL----LSKAYFLSEQYKAELS 173 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hh--chh--hhcCCCC----CChhhcchHHHHHHHH
Confidence 444443211 1368999999999999999954433221 00 000 0000000 0000011235999999
Q ss_pred HcCCceeEEEECC
Q 017777 342 AAGFQGFQVVSSA 354 (366)
Q Consensus 342 ~aGf~~~~~~~~~ 354 (366)
++||++......+
T Consensus 174 ~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 174 NSGFRIDDVKELD 186 (225)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HcCCCeeeeeecC
Confidence 9999988776553
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=117.44 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=108.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK-- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-- 259 (366)
...+++.++ .+..+|||||||+|..+..++..+|+.+++++|+ +.+++.++++ ++++++++|++++.+.
T Consensus 99 ~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 176 (276)
T 2b3t_A 99 VEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ 176 (276)
T ss_dssp HHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred HHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCC
Confidence 344555443 3467999999999999999999999999999998 7887776542 4799999999875532
Q ss_pred CCEEEecc-------------ccccCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhh
Q 017777 260 GDAIFIKW-------------ICHDWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIH 316 (366)
Q Consensus 260 ~D~i~~~~-------------~lh~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 316 (366)
.|+|+++. ++++.|. .....+++.+.+.|+|||++++...
T Consensus 177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------- 239 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------- 239 (276)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------
T ss_pred ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------
Confidence 39999973 4433331 3457899999999999999998521
Q ss_pred cchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC-CCceeEEEEEe
Q 017777 317 VDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS-AFNTYIMEFLK 364 (366)
Q Consensus 317 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~k 364 (366)
..+.+++.++++++||+.+++... .+...++.++|
T Consensus 240 -------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 -------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp -------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred -------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 013678899999999998877765 45556666654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=109.86 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=80.8
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C-CceEEEccCCCCCC----
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P-GVEHVGGDMFVSVP---- 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~~---- 258 (366)
.++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. + ++ ++.+|..+.++
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3455555 56678999999999999999999999999999998 7777776531 3 67 88888866333
Q ss_pred CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..|+|++...+|+ ..+++++.++|+|||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 2499999999987 4689999999999999998764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.3e-14 Score=123.00 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=77.9
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC---CCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV---SVP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~ 258 (366)
.+..+..... .++.+|||||||+|..+..+++..|. +++++|+ |.+++.+++. .+++++.+|... +++
T Consensus 49 ~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 125 (236)
T 3orh_A 49 YMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP 125 (236)
T ss_dssp HHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC
T ss_pred HHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccccc
Confidence 3344444332 45689999999999999999887664 7899998 8888877642 467888887643 344
Q ss_pred CC--CEEEe-----ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 KG--DAIFI-----KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~~--D~i~~-----~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.. |.|++ ...+++++ +...++++++++|||||++++.+.
T Consensus 126 ~~~FD~i~~D~~~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~~ 171 (236)
T 3orh_A 126 DGHFDGILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccCCceEEEeeeecccchhhhc--chhhhhhhhhheeCCCCEEEEEec
Confidence 33 77754 45555544 445889999999999999998764
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=116.40 Aligned_cols=107 Identities=10% Similarity=0.069 Sum_probs=81.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CC------C-C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SV------P-K 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~------~-~ 259 (366)
...++..++ ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++...-.++..++.+ +. + .
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 445666665 677889999999999999999986 468999998 8888877643111123333322 11 2 2
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|++..++|+++.++...+++++.++| |||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 39999999999999888889999999999 9999998754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=127.93 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=87.2
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC------------CCCceEEEccCCC-C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA------------FPGVEHVGGDMFV-S 256 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~ 256 (366)
++..+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+++++++|+.+ +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 344443 3467899999999999999999988 5579999998 888877744 2579999999987 5
Q ss_pred CCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 VPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 ~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+. .|+|++..++||++++....+++++.++|+|| .++|..+
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 543 39999999999999988888999999999999 7777654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.3e-13 Score=118.33 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCeEEEEeCCccH----HHHHHHHhCC----CCeEEEecc-hhHHhhCCCC----------------------------
Q 017777 201 GLNSVVDVGGGIGA----TLNMIISKYP----SIKGINFDL-PHVIQDAPAF---------------------------- 243 (366)
Q Consensus 201 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 243 (366)
+..+|+|+|||+|. ++..|++.++ +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5555666645 468999998 8888776531
Q ss_pred ---------CCceEEEccCCC-CCC--CC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 244 ---------PGVEHVGGDMFV-SVP--KG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 244 ---------~~v~~~~~D~~~-~~~--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.+|.|.++|+.+ +++ .. |+|+|.++|++++++...+++++++++|+|||+|++-
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 258999999988 565 23 9999999999999888889999999999999999883
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=117.97 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=92.9
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC----C---CCceEEEccCCCCCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA----F---PGVEHVGGDMFVSVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~~v~~~~~D~~~~~~~~- 260 (366)
.++..+. +.+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ . ++++++.+|+.++.+..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455555 667789999999999999999998 78889999998 777765543 2 57999999998865543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++ ++++. ..+|+++.++|+|||++++...... ..+++.+.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99987 33443 3789999999999999999763210 13456677
Q ss_pred HHHcCCceeEEEE
Q 017777 340 AKAAGFQGFQVVS 352 (366)
Q Consensus 340 l~~aGf~~~~~~~ 352 (366)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 8888998877655
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-12 Score=117.23 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=79.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------------CCceEEEccCCC-C----CC--C
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------------PGVEHVGGDMFV-S----VP--K 259 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~-~----~~--~ 259 (366)
+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5689999999999999988874 5678999998 7777766532 368999999987 4 32 2
Q ss_pred -C-CEEEeccccccC--ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 -G-DAIFIKWICHDW--SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 -~-D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. |+|++.+++|+. +.++...+|++++++|+|||++++..+
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 3 999999999987 345667999999999999999999765
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=119.03 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=75.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C--------CceEEEccCCC---------CCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P--------GVEHVGGDMFV---------SVP 258 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------~v~~~~~D~~~---------~~~ 258 (366)
...+|||||||+|..+..++.. ...+++++|+ +.+++.|++. . ++++.+.|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3579999999999877666653 3458999998 8888887653 1 15677888732 234
Q ss_pred CC--CEEEeccccccC-ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 KG--DAIFIKWICHDW-SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~~--D~i~~~~~lh~~-~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+ |+|++..++|+. +.++...+|++++++|||||++++..+
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 33 999999999874 444567999999999999999998765
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-12 Score=108.06 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=93.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC--CCC-CC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV--SVP-KG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~-~~-D~i~~~~ 267 (366)
+.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. ++++++..|... +.+ .. |+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 678999998 8888877642 679999877654 133 32 9998763
Q ss_pred -ccccC------ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 268 -ICHDW------SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 268 -~lh~~------~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
.+++. ..+....+|+++.++|||||++++.......... .......+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------------~~~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGD---------------------MEKDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------C---------------------HHHHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCH---------------------HHHHHHHHHHHhC
Confidence 32220 2245568899999999999999997653221100 0001133455555
Q ss_pred HHcCCceeEEEECC---CceeEEEEEec
Q 017777 341 KAAGFQGFQVVSSA---FNTYIMEFLKS 365 (366)
Q Consensus 341 ~~aGf~~~~~~~~~---~~~~vie~~k~ 365 (366)
...+|.+....... ....++.+.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (185)
T 3mti_A 157 DQRVFTAMLYQPLNQINTPPFLVMLEKL 184 (185)
T ss_dssp CTTTEEEEEEEESSCSSCCCEEEEEEEC
T ss_pred CCceEEEEEehhhccCCCCCeEEEEEec
Confidence 66678887766653 33344444443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.4e-12 Score=108.97 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=77.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CCCC--CEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VPKG--DAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~--D~i~~~~~ 268 (366)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457899999999999999999999999999998 7887776542 689999999986 3 4433 99998765
Q ss_pred cccCChH------HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 269 CHDWSDE------HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 269 lh~~~~~------~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.++.... ....+|+++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4322211 12478999999999999998853
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=106.69 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=94.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH----HhhCCCCCCceEEEccCCCC-----CCCC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV----IQDAPAFPGVEHVGGDMFVS-----VPKG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~-----~~~~-D~i~~~~ 267 (366)
..++.+|||||||+|..+..+++..++.+++++|+ +.+ .+.+++..++.++.+|+..+ .+.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988778999998 553 44454456888888888652 2333 999886
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH----HHHHHc
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR----ALAKAA 343 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll~~a 343 (366)
+.++ .+...+|++++++|||||++++.-...+. + . ..+.+++. +.++++
T Consensus 134 ~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQK---NQIEILKANAEFFLKEKGEVVIMVKARSI--------------D---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCST---THHHHHHHHHHHHEEEEEEEEEEEEHHHH--------------C---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccCh---hHHHHHHHHHHHHhCCCCEEEEEEecCCc--------------c---------c-cCCHHHHHHHHHHHHHhh
Confidence 3222 33446699999999999999997322100 0 0 01122321 237888
Q ss_pred CCceeEEEECC---CceeEEEEEe
Q 017777 344 GFQGFQVVSSA---FNTYIMEFLK 364 (366)
Q Consensus 344 Gf~~~~~~~~~---~~~~vie~~k 364 (366)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999988773 3556666665
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=114.80 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=76.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC---CCCCC--CEEEe-cc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV---SVPKG--DAIFI-KW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~~~--D~i~~-~~ 267 (366)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999966443 38899998 8887766542 568999999765 45543 99998 55
Q ss_pred c--cccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 268 I--CHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 268 ~--lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
. .+.+.......++++++++|||||++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 34444445568899999999999999998754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=111.33 Aligned_cols=133 Identities=15% Similarity=0.129 Sum_probs=93.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhC----CCCCCceEEEccCCCC----CCC-C-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDA----PAFPGVEHVGGDMFVS----VPK-G-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~----~~~-~-D~i~~~ 266 (366)
++++.+|||+|||+|.++..+++.. |+-+++++|. +.+++.+ ++.+++..+.+|...+ ... . |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 6788999999999999999999875 8889999997 7776544 4457899999988762 122 2 877653
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
+++. ++...+++++++.|||||+++|.......+... +... ..++-.+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~------------------p~~~--~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTT------------------EPSE--VYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT------------------CCCH--HHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCC------------------ChHH--HHHHHHHHHHHCCCE
Confidence 3222 234578999999999999999875322111000 0000 122335678899999
Q ss_pred eeEEEECCC
Q 017777 347 GFQVVSSAF 355 (366)
Q Consensus 347 ~~~~~~~~~ 355 (366)
+++...+..
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 999888753
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-12 Score=110.59 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=82.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCC--CEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKG--DAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~ 271 (366)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +++.. |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45689999999999999999998654 8999997 777766553 2689999999987 66543 99999998876
Q ss_pred CC-------------hHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 272 WS-------------DEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 272 ~~-------------~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+. .++...+|+++.++|+|||++++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 54 345679999999999999999998753
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=107.34 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=97.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHh----hCCCCCCceEEEccCCCC-----CCCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQ----DAPAFPGVEHVGGDMFVS-----VPKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~~~~-D~i~~~ 266 (366)
+.+..+|||+|||+|.++..+++.+ |+.+++++|. +.+++ .+++.++++++.+|+.++ .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 5678999997 64443 444457899999999762 2233 999965
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.. .......++++++++|+|||++++. .......... . ......+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~---------~---------~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK---------E---------PEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS---------C---------HHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC---------C---------hhhhhHHHHHHH-Hhh-ce
Confidence 44 1223345699999999999999997 2211110000 0 001235677777 777 99
Q ss_pred eeEEEECCCc---eeEEEEEec
Q 017777 347 GFQVVSSAFN---TYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~~---~~vie~~k~ 365 (366)
+++....... ..++.++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEECC
T ss_pred eeeEeccCcccCCCEEEEEEeC
Confidence 9988887544 666777653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-12 Score=113.63 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=95.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCC--CCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPK--GDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~--~D~i~~~~~lh~ 271 (366)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ -.+++..+|+.++++. .|+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4568999999999999999888655 8999998 7777766542 1288999988764432 39999865544
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
....+++++.+.|+|||++++.+... .+.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILK-----------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeecc-----------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999999999975421 125788999999999999988
Q ss_pred ECCCceeE
Q 017777 352 SSAFNTYI 359 (366)
Q Consensus 352 ~~~~~~~v 359 (366)
..++...+
T Consensus 243 ~~~~W~~l 250 (254)
T 2nxc_A 243 AEGEWVLL 250 (254)
T ss_dssp EETTEEEE
T ss_pred ccCCeEEE
Confidence 87655443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=112.93 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=97.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~ 259 (366)
...++..+. ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. .+++++.+|+.+.++.
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 345555555 677889999999999999999999 78899999998 7888777642 4599999999876654
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++ ++++. ..+++++.++|+|||++++...... ...++.
T Consensus 161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHH
Confidence 3 99987 23333 3689999999999999999753210 135677
Q ss_pred HHHHHcC--CceeEEEE
Q 017777 338 ALAKAAG--FQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aG--f~~~~~~~ 352 (366)
++++++| |..+++..
T Consensus 205 ~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTIN 221 (255)
T ss_dssp HHHHHTGGGBSCCEEEC
T ss_pred HHHHHcCCCccccEEEE
Confidence 8888999 88777654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=105.43 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=92.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C-CceEEEccCCCC---CCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P-GVEHVGGDMFVS---VPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~---~~~ 259 (366)
.++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. + +++++.+|+.+. .+.
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 3455555 667789999999999999999987 779999998 8888776542 4 799999999872 223
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.|+|++...+ + .. +++++.++|+|||++++..... .+..++.++
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQL 166 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHH
Confidence 4999987644 1 23 8999999999999999865321 124567788
Q ss_pred HHHcCCceeEE
Q 017777 340 AKAAGFQGFQV 350 (366)
Q Consensus 340 l~~aGf~~~~~ 350 (366)
+++.|+++.++
T Consensus 167 l~~~g~~i~~i 177 (204)
T 3njr_A 167 HARHGGQLLRI 177 (204)
T ss_dssp HHHHCSEEEEE
T ss_pred HHhCCCcEEEE
Confidence 89999887665
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=108.67 Aligned_cols=137 Identities=18% Similarity=0.141 Sum_probs=97.2
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCC--CCCCCC--CEEEecc
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMF--VSVPKG--DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~--~~~~~~--D~i~~~~ 267 (366)
..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|.. .+.+.. |+|+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999886 678999998 8888776542 27999999963 344433 9999887
Q ss_pred ccccCChHH-----------------HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 268 ICHDWSDEH-----------------CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 268 ~lh~~~~~~-----------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
.++..++.+ ...+++.+.+.|+|||++++......
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 766543321 36899999999999999999632110
Q ss_pred CCHHHHHHHHHHcCCceeEEEECC--CceeEEEEEe
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSSA--FNTYIMEFLK 364 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~~--~~~~vie~~k 364 (366)
...+++.+++++.||.+..+.... ....++.+.|
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~ 219 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFK 219 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEec
Confidence 124678899999999876665443 2334554444
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-12 Score=108.60 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=75.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-C--CCCC--CEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-S--VPKG--DAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~~~~--D~i~~~~~ 268 (366)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999998 777776653 2579999999876 3 4443 88876543
Q ss_pred cccCChHH------HHHHHHHHHHhCCCCcEEEEEc
Q 017777 269 CHDWSDEH------CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 269 lh~~~~~~------~~~~L~~~~~~L~pgG~lli~e 298 (366)
..+..... ...+|+.+.++|+|||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 32211110 2478999999999999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=106.85 Aligned_cols=138 Identities=10% Similarity=-0.005 Sum_probs=97.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC-CCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK-GDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~ 271 (366)
....+|||+|||+|-++..++...|+.+++++|+ +.+++.++++ ...++...|..+ +.+. +|+|+...+||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 4578999999999999999999999999999998 8888877653 122333366655 3333 399999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+ + +....+.++.+.|+|||.+|-.+.-.=..+. .+-.......|++.+ ...+.+++..
T Consensus 128 L-~-~~~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~~-~~~~~~~~~~ 185 (200)
T 3fzg_A 128 L-K-QQDVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESFT-KGWIKILDSK 185 (200)
T ss_dssp H-H-HTTCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHHT-TTTSCEEEEE
T ss_pred h-h-hhHHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHhc-cCcceeeeee
Confidence 9 3 3346677999999999999888732111110 122223355666666 6677888777
Q ss_pred ECCCceeE
Q 017777 352 SSAFNTYI 359 (366)
Q Consensus 352 ~~~~~~~v 359 (366)
.+++-.-.
T Consensus 186 ~~~nEl~y 193 (200)
T 3fzg_A 186 VIGNELVY 193 (200)
T ss_dssp EETTEEEE
T ss_pred eeCceEEE
Confidence 77554433
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.1e-12 Score=109.83 Aligned_cols=143 Identities=11% Similarity=0.035 Sum_probs=97.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hh----HHhhCCCCCCceEEEccCCCC--CC---CC-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PH----VIQDAPAFPGVEHVGGDMFVS--VP---KG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~--~~---~~-D~i~~~ 266 (366)
+.+..+|||+|||+|.++..+++.+ |+.+++++|+ +. +++.+++..+++++.+|+.++ .+ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 6789999998 44 344555457899999999872 22 23 999985
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.. ..+....+++++.++|+|||++++.-......... .... +...+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~---------~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAEA---------VFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHHH---------HHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHHH---------HHHHH-HHHHHHCCCc
Confidence 44 22344567999999999999999942211000000 0000 00123 5889999999
Q ss_pred eeEEEECCC---ceeEEEEEec
Q 017777 347 GFQVVSSAF---NTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~---~~~vie~~k~ 365 (366)
+++...... ...++.++++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~~~ 232 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGVYR 232 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEEEC
T ss_pred eEEEEecCCccCCcEEEEEEeC
Confidence 998777643 3566666653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-12 Score=107.43 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=79.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-C-CC-CC-CEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-S-VP-KG-DAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~~-~~-D~i~~ 265 (366)
..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6779999998 7888777543 579999999866 2 33 33 99998
Q ss_pred cccccc-------CChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 KWICHD-------WSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ~~~lh~-------~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
...+.. ...+....+++++.++|+|||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 765511 12234567999999999999999998754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-12 Score=112.46 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=87.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC--CCC-CC--CEEEeccccccC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV--SVP-KG--DAIFIKWICHDW 272 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~--~~~-~~--D~i~~~~~lh~~ 272 (366)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++++|+.+ +++ .. |+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 45689999999999999999987 568999998 888887765 4789999999965 444 33 9999871
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
+...+|++++++|||||+++.. + ...+.+++.++++++||+.+.+..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~-----------------------------~-~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV-----------------------------G-PRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE-----------------------------E-SSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe-----------------------------C-CcCCHHHHHHHHHHCCCeEEEEEe
Confidence 1237799999999999999910 0 012345788999999999877654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-12 Score=111.75 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=97.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC----C-CCEEEec
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP----K-GDAIFIK 266 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~-~D~i~~~ 266 (366)
.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++. .+++++++|+.+ +.+ . .|+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999998889999999998 7777776542 469999999866 432 2 3999987
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.+ .+ ...+++.+.++|+|||++++....... ....++.+.++++||+
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 22 458899999999999999986321000 0134677889999999
Q ss_pred eeEEEE--CC---CceeEEEEEec
Q 017777 347 GFQVVS--SA---FNTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~--~~---~~~~vie~~k~ 365 (366)
+++... .+ +...++.++|.
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 196 LENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EeEEEEEecCCCCCceEEEEEEec
Confidence 877654 22 33445555553
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=113.46 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=93.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC-CC--C-C-CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV-SV--P-K-GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~-~~--~-~-~D~i 263 (366)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ .. + . .|+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998777789999998 777776653 2689999999876 21 2 2 3999
Q ss_pred EeccccccCChHHH--HHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 264 FIKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 264 ~~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
++....+..+.... ..++++++++|+|||++++..... ..+ .....++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~-----------~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD-----------LELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC-----------HHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc-----------hHHHHHHHHHHH
Confidence 99776665544332 588999999999999999874210 000 113567889999
Q ss_pred HcCCceeEEEEC
Q 017777 342 AAGFQGFQVVSS 353 (366)
Q Consensus 342 ~aGf~~~~~~~~ 353 (366)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.9e-12 Score=110.75 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=95.5
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~~ 259 (366)
..++..++ +.+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 45666665 677889999999999999999998 67889999997 777776653 2679999999987 4664
Q ss_pred C--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 G--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
. |+|++. +++. ..+|+++.++|+|||++++...... ...++.
T Consensus 165 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVALD-----LMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999872 3333 3789999999999999999764210 123566
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
+.++++||..+++..
T Consensus 209 ~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 209 RAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHTTTTEEEEEEEE
T ss_pred HHHHHCCCceEEEEE
Confidence 677788998766544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.1e-12 Score=106.10 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=92.0
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC---C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP---K 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~---~ 259 (366)
.++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. +++++..+|+.++.+ .
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3444444 6677899999999999999999877 68999997 7777766542 578999999866333 3
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.|+|++..++++ ...+++++.++|+|||++++..... .+..++.++
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence 499999888765 2578999999999999999865321 014567889
Q ss_pred HHHcCCce
Q 017777 340 AKAAGFQG 347 (366)
Q Consensus 340 l~~aGf~~ 347 (366)
+++.||.+
T Consensus 147 l~~~g~~~ 154 (192)
T 1l3i_A 147 LRDLGFDV 154 (192)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCce
Confidence 99999954
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.2e-11 Score=102.90 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=95.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhH----HhhCCCCCCceEEEccCCCCC-----CCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHV----IQDAPAFPGVEHVGGDMFVSV-----PKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~~-----~~~-D~i~~~ 266 (366)
+.+..+|||+|||+|..+..+++.. |+.+++++|+ +.+ ++.+++..++.++.+|...+. .+. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5678999999999999999998874 5779999998 655 344444578999999987621 223 999876
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
... ++ ....+++.+++.|||||+|++.......+... ... ...++..+.|+++||+
T Consensus 154 ~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~~d~t~-------------------~~~-e~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK-------------------DPK-EIYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC-------C-------------------CSS-SSTTHHHHHHHHTTEE
T ss_pred CCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCCcccCC-------------------CHH-HHHHHHHHHHHHCCCE
Confidence 543 22 33345566777999999999974221111000 000 0112345677889999
Q ss_pred eeEEEECC---CceeEEEEEec
Q 017777 347 GFQVVSSA---FNTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~---~~~~vie~~k~ 365 (366)
+++...+. ..+.++.++|+
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEEEC
T ss_pred EEEEeccCCCcCceEEEEEEeC
Confidence 99988874 34677777664
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=106.74 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=100.7
Q ss_pred CC-CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-C--CCC-C-CEEE
Q 017777 199 FE-GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-S--VPK-G-DAIF 264 (366)
Q Consensus 199 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~--~~~-~-D~i~ 264 (366)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.++++ ++++++.+|+.+ + ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999998776 8999998 7787776542 479999999987 2 333 2 9999
Q ss_pred eccccccC------------------ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC
Q 017777 265 IKWICHDW------------------SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 265 ~~~~lh~~------------------~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
++..++.. .......+++.+.++|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 97554332 112345799999999999999999521 1
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEEC------CCceeEEEEEec
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSS------AFNTYIMEFLKS 365 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~------~~~~~vie~~k~ 365 (366)
....++.+++++.||...++.++ .....+++++|.
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKD 219 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence 12456788899999998776554 135667888875
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=111.22 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=78.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCCCEEEeccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKGDAIFIKWICH 270 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~D~i~~~~~lh 270 (366)
+.++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++. ++++++++|..+ +....|+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67889999999999988877777778999999998 8888887653 689999999886 42234999986542
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+ +..++++++.++|||||+|++.+
T Consensus 199 --~--d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp --S--CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred --c--CHHHHHHHHHHHcCCCcEEEEEc
Confidence 2 34588999999999999999976
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=109.30 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=76.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++.++++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999886 568999998 8888777643222388899877 66543 999998866555322
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
...+|++++++|+|||++++....
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 568999999999999999997653
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.6e-12 Score=109.32 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC--C--CCCC--CEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV--S--VPKG--DAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~--~--~~~~--D~i~~~~ 267 (366)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++++|+.+ + ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 467999999999999999999999999999998 777766543 2579999999765 2 4544 8888764
Q ss_pred ccccCChHHH------HHHHHHHHHhCCCCcEEEEEc
Q 017777 268 ICHDWSDEHC------VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 268 ~lh~~~~~~~------~~~L~~~~~~L~pgG~lli~e 298 (366)
...+...... ..+++.++++|||||++++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 4432222221 258999999999999999865
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=115.25 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=85.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------CCceEEEccCCCCCCCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------PGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~~~~ 260 (366)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|++++.+..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566665 44558999999999999999999999999999998 7788777642 25788999999866643
Q ss_pred --CEEEecccccc---CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 --DAIFIKWICHD---WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 --D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|+|+++..+|+ .++.....+++++.+.|+|||+++++.
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 99999998885 334445588999999999999999964
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=103.23 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=83.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CC---CCC--CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SV---PKG--DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~---~~~--D~i~~~~~l 269 (366)
.....+|||||||. +.+|. +.+++.+++. .+++++.+|+.+ ++ +.. |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56779999999996 23786 7888777643 369999999877 44 443 999999999
Q ss_pred ccC-ChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCC
Q 017777 270 HDW-SDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 270 h~~-~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 345 (366)
|++ ++. ..+|++++++|||||++++.+....... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 998 654 5889999999999999999665432210 01223578999999999999
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-12 Score=116.34 Aligned_cols=144 Identities=9% Similarity=-0.017 Sum_probs=94.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC----CCC-----CCCEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV----SVP-----KGDAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~----~~~-----~~D~i 263 (366)
+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++. .+++++.+|+.+ +++ ..|+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999888899999998 8888776542 359999998532 344 23999
Q ss_pred EeccccccCCh-------------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 264 FIKWICHDWSD-------------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 264 ~~~~~lh~~~~-------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
+++..+|.... +....++++++++|||||.+.+++.+.... ........+.. . ..+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~l~~~g~~~--~-~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQLKKRLRWYS--C-MLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHHGGGBSCEE--E-EESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------HhcccceEEEE--E-CCCCh
Confidence 99866664431 112356788999999999998876543210 00000000000 0 12334
Q ss_pred CCHHHHHHHHHHcCCceeEEEEC
Q 017777 331 RTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
.+.+++.++++++||+.+++...
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEE
Confidence 45688999999999998877665
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.7e-11 Score=100.86 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=79.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC--CCeEEEecchhHHhhCCCCCCceEEEccCCC-C---------
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP--SIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-S--------- 256 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------- 256 (366)
+.++.+.+..+.+..+|||||||+|.++..+++.+| +.+++++|+.++ ...++++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 445566665345678999999999999999999998 689999998543 124679999999877 4
Q ss_pred ----------------CCC-C-CEEEeccccccCC----hHH-----HHHHHHHHHHhCCCCcEEEEEc
Q 017777 257 ----------------VPK-G-DAIFIKWICHDWS----DEH-----CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 257 ----------------~~~-~-D~i~~~~~lh~~~----~~~-----~~~~L~~~~~~L~pgG~lli~e 298 (366)
++. . |+|++...+|+.. +.. ...+|+++.++|+|||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 2 9999988777532 111 1248999999999999998843
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=106.09 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=73.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-C-CCEEEeccccccC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-K-GDAIFIKWICHDW 272 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~-~D~i~~~~~lh~~ 272 (366)
..+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+++++.+|+.+..+ . .|+|++..+ ++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~- 143 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS- 143 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS-
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC-
Confidence 57999999999999999999999999999998 7777766532 459999999987333 2 399997542 22
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 273 SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 273 ~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
...+++++.++|+|||++++.
T Consensus 144 ----~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 144 ----LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----HHHHHHHHTTSEEEEEEEEEE
T ss_pred ----HHHHHHHHHHhcCCCcEEEEE
Confidence 358899999999999999986
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=100.90 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=91.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK--G 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~ 260 (366)
..+...+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++. ++++++.+|+.++.+. .
T Consensus 25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 34555554 56678999999999999999988 7889999998 7777776543 5799999998774443 4
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALA 340 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 340 (366)
|+|++..+ + ....+++++++. |||++++...... +..++.+++
T Consensus 102 D~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l 144 (183)
T 2yxd_A 102 NKAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEF 144 (183)
T ss_dssp SEEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHH
T ss_pred cEEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHH
Confidence 99999888 2 235789999988 9999999764210 135677899
Q ss_pred HHcCCceeEE
Q 017777 341 KAAGFQGFQV 350 (366)
Q Consensus 341 ~~aGf~~~~~ 350 (366)
+++||.+..+
T Consensus 145 ~~~g~~~~~~ 154 (183)
T 2yxd_A 145 ESRGYNVDAV 154 (183)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCeEEEE
Confidence 9999876544
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.8e-11 Score=105.55 Aligned_cols=149 Identities=14% Similarity=0.063 Sum_probs=95.4
Q ss_pred HHHHHHhccCCC-CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh-CCCCCCceEEE-ccCCC----CCCC-
Q 017777 189 MKKILENYKGFE-GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD-APAFPGVEHVG-GDMFV----SVPK- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~v~~~~-~D~~~----~~~~- 259 (366)
+..++..+. +. ...+|||||||+|.++..+++. +..+++++|+ +.|++. .+..+++.... .|+.. .+|.
T Consensus 73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 445666665 44 4579999999999999988886 4458999998 777766 33345554433 23321 2332
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-hhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-ASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
.|++++..++|++ ..+|.+++++|+|||+++++- .|+-..... ....-...+.. ...+..+++.
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v~ 216 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETVT 216 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHHH
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHHH
Confidence 4999998888764 478999999999999999862 111110000 00000000100 0123578999
Q ss_pred HHHHHcCCceeEEEEC
Q 017777 338 ALAKAAGFQGFQVVSS 353 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~~ 353 (366)
+++.++||.+..+...
T Consensus 217 ~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHTTEEEEEEEEC
T ss_pred HHHHHCCCEEEEEEEC
Confidence 9999999998876654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=115.75 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=86.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCC-CE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKG-DA 262 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~-D~ 262 (366)
..+++.++ .....+|||||||+|.++..+++..|+.+++++|+ +.+++.+++. ..++++.+|+++..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 44556564 34457999999999999999999999999999998 7777776542 34678899988643433 99
Q ss_pred EEeccccccC---ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 263 IFIKWICHDW---SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 263 i~~~~~lh~~---~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|+++..+|+. ..+....+|++++++|+|||+++++..
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 9999999862 345567999999999999999999764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.7e-11 Score=112.49 Aligned_cols=112 Identities=18% Similarity=0.282 Sum_probs=85.5
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC-------CC--------CCCceEEEcc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA-------PA--------FPGVEHVGGD 252 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~v~~~~~D 252 (366)
+..++..+. +.+..+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+++++.+|
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 345566565 67788999999999999999999888778999997 6665555 32 2578998876
Q ss_pred CCC-C--C----CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC
Q 017777 253 MFV-S--V----PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT 304 (366)
Q Consensus 253 ~~~-~--~----~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 304 (366)
.+. + + ...|+|+++++++. ++...+|+++.+.|||||+|++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 442 2 2 23499998877742 455678999999999999999998776654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=100.64 Aligned_cols=130 Identities=13% Similarity=0.058 Sum_probs=101.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC---CCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP---KGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~---~~D~i~~~~~ 268 (366)
.+..+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.+++.+ ..|+|++...
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3567999999999999999999998889999998 7777777642 479999999988555 2499987655
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
- .+-...+|....+.|+|+|++++.-. ...+.++++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHCCCEEE
Confidence 2 34467899999999999999888422 025678899999999988
Q ss_pred EEEE---CCCceeEEEEEe
Q 017777 349 QVVS---SAFNTYIMEFLK 364 (366)
Q Consensus 349 ~~~~---~~~~~~vie~~k 364 (366)
+..- .+-++.+|.+.+
T Consensus 139 ~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVEA 157 (225)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 7543 345666777654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=109.84 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=97.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC----C-CCEEEec
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP----K-GDAIFIK 266 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~-~D~i~~~ 266 (366)
....+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+++++++|+.+ +.. . .|+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999999999999999999999997 7777766542 469999999876 331 2 3999986
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.+- + ...+++.+.+.|+|||++++....... ....++.+.++..||+
T Consensus 159 a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC----C--HHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 1 247899999999999999986531110 0123466778889999
Q ss_pred eeEEEEC--C---CceeEEEEEe
Q 017777 347 GFQVVSS--A---FNTYIMEFLK 364 (366)
Q Consensus 347 ~~~~~~~--~---~~~~vie~~k 364 (366)
+.++.+. + ....++.+.|
T Consensus 206 ~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 206 LGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEEeeCCCCCCcEEEEEEEe
Confidence 8877654 2 3445666655
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=100.86 Aligned_cols=130 Identities=13% Similarity=0.021 Sum_probs=101.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC---CCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP---KGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~---~~D~i~~~~~ 268 (366)
.+..+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++++++.+|.++..+ ..|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3568999999999999999999988888999998 7787777642 579999999998443 2499987665
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
. .+-...+|....+.|+++|++++.-. ...++++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCCCEEE
Confidence 4 34567899999999999999888531 015678899999999988
Q ss_pred EEEEC---CCceeEEEEEe
Q 017777 349 QVVSS---AFNTYIMEFLK 364 (366)
Q Consensus 349 ~~~~~---~~~~~vie~~k 364 (366)
+..-+ +.++.+|.+.+
T Consensus 145 ~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 145 AEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 75532 45667777765
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-11 Score=114.21 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=83.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC-C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D 261 (366)
.+...+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +.++. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4555554 456789999999999999988875 55689999985566555431 679999999987 55544 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+|++..++|++..+.....+.+++++|+|||.+++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999998888887666678889999999999999854
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-11 Score=98.01 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=82.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCC-C--------CCC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-S--------VPK 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------~~~ 259 (366)
..+...+....+..+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..+++++.+|+.+ + ++.
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence 3455555434567899999999999999999985 678999999844432 3789999999987 4 553
Q ss_pred C--CEEEeccccccCChHH---------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 G--DAIFIKWICHDWSDEH---------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~--D~i~~~~~lh~~~~~~---------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. |+|++...+|..+... ...+++++.++|+|||++++...
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3 9999999888765431 15889999999999999998765
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-11 Score=104.88 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------------CCCCceEEEccCCC--C--CCCC--
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------------AFPGVEHVGGDMFV--S--VPKG-- 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~--~--~~~~-- 260 (366)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...+++++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999998 77766442 23689999999876 3 4444
Q ss_pred CEEEeccccccCChH--H----HHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 DAIFIKWICHDWSDE--H----CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 D~i~~~~~lh~~~~~--~----~~~~L~~~~~~L~pgG~lli~e 298 (366)
|.|++...-.++... . ...+|+++.++|+|||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 888764332221100 0 1368999999999999999864
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-11 Score=105.65 Aligned_cols=148 Identities=17% Similarity=0.091 Sum_probs=87.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCC--------ceEEE-ccCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPG--------VEHVG-GDMFVSV 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~--------v~~~~-~D~~~~~ 257 (366)
+..++..+.......+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++ +.+.. .|+..+.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR 103 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC
Confidence 4455666652234569999999999999999987 3348999998 777666433 233 33222 2221111
Q ss_pred CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCch-hhhhhhhcchhhHhhCCCCccCCHHHH
Q 017777 258 PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSL-ASKVVIHVDCIMLAHNPGGKERTEQEF 336 (366)
Q Consensus 258 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~ 336 (366)
+ |.+.+..++.++ ..+|++++++|||||++++.. .+....... ........+.. ....+.+++
T Consensus 104 ~--d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~~l 167 (232)
T 3opn_A 104 P--SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPK-------VHQMTIEKV 167 (232)
T ss_dssp C--SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHHHH
T ss_pred C--CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcc-------hhHHHHHHH
Confidence 1 444444444332 478999999999999999853 111000000 00000000100 011367899
Q ss_pred HHHHHHcCCceeEEEEC
Q 017777 337 RALAKAAGFQGFQVVSS 353 (366)
Q Consensus 337 ~~ll~~aGf~~~~~~~~ 353 (366)
.++++++||++..+...
T Consensus 168 ~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 168 LKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHTEEEEEEEEC
T ss_pred HHHHHHCCCEEEEEEEc
Confidence 99999999998877654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-11 Score=105.12 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=83.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHh--CCCCeEEEecc-hhHHhhCCCC---C-------C------------
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISK--YPSIKGINFDL-PHVIQDAPAF---P-------G------------ 245 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------~------------ 245 (366)
.++..+. .....+|||+|||+|.++..+++. .+..+++++|+ +.+++.+++. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444443 235679999999999999999988 67788999998 8888777632 1 2
Q ss_pred -------------ce-------------EEEccCCCCC------CC--CCEEEeccccccCCh-------HHHHHHHHHH
Q 017777 246 -------------VE-------------HVGGDMFVSV------PK--GDAIFIKWICHDWSD-------EHCVKFLKNC 284 (366)
Q Consensus 246 -------------v~-------------~~~~D~~~~~------~~--~D~i~~~~~lh~~~~-------~~~~~~L~~~ 284 (366)
++ ++++|++++. +. .|+|+++..++...+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 67 9999998843 32 399999877665442 5567899999
Q ss_pred HHhCCCCcEEEEEcc
Q 017777 285 YEALPVNGKVIVAES 299 (366)
Q Consensus 285 ~~~L~pgG~lli~e~ 299 (366)
.++|+|||+++++..
T Consensus 201 ~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 201 ASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHSCTTCEEEEEES
T ss_pred HHhcCCCcEEEEeCc
Confidence 999999999998554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-11 Score=107.29 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=95.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~ 259 (366)
...++..++ +.+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 345566565 677789999999999999999999 67889999998 7777766542 4789999998875543
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHH
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFR 337 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 337 (366)
.|+|++. .++. ..+|+++.++|+|||++++.....+ ...++.
T Consensus 180 ~~~D~V~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFLD-----VPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEEC-----CSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CccCEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3999872 3333 3789999999999999999764210 123556
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
+.|+++||..+++..
T Consensus 224 ~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 224 KKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCCceeEEEE
Confidence 677788888776654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.5e-11 Score=104.05 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=78.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCC---CCCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVP---KGDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~---~~D~i 263 (366)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|..+ ..+ ..|+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34578999999999999999999988 889999998 7777766542 479999999865 222 23999
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
++... ......+|+++.++|+|||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 88543 3345678999999999999999876654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-11 Score=104.96 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=81.2
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC-
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~- 259 (366)
....++..+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .++++..+|...+++.
T Consensus 79 ~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 79 MVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 3445666565 66778999999999999999999987 78999997 7777766542 4689999998545542
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|++..+++++++ ++.+.|+|||++++...
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 399999999998764 57889999999999654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.2e-11 Score=103.27 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=77.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C-----CCCCE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V-----PKGDA 262 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~-----~~~D~ 262 (366)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|..+. . ...|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999998 789999998 7777766532 4699999998652 1 22499
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|++.... +....+++++.++|+|||.+++.+...+
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9876543 3345889999999999998888766543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=98.20 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=79.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CC-C-CCEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VP-K-GDAIFIKW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~-~-~D~i~~~~ 267 (366)
.+..+|||+|||+|.++..++.. +..+++++|+ +.+++.++++ ++++++++|+.+ . .+ . .|+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 5558999998 8888777653 579999999876 2 32 2 39999988
Q ss_pred ccccCChHHHHHHHHHHHH--hCCCCcEEEEEcccc
Q 017777 268 ICHDWSDEHCVKFLKNCYE--ALPVNGKVIVAESIL 301 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~--~L~pgG~lli~e~~~ 301 (366)
.+|+. .++...+++.+.+ +|+|||.+++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87653 3566789999999 999999999976543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-11 Score=115.91 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=85.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~ 260 (366)
.+.++..+. ..+..+|||||||+|.++..+++ .+..+++++|+.++++.+++. ++++++.+|+.+ +.+..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345566554 45668999999999999998877 577799999985576665431 679999999988 66654
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
|+|++..++|++..++....+.+++++|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888887777777888899999999999985
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=8e-11 Score=101.55 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=79.6
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCC-C--
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVP-K-- 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~-~-- 259 (366)
..++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|..+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 34555555 667889999999999999999998 568999998 777776654 2579999999887332 2
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.|+|++..++|++++ .+.+.|+|||++++.-..
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 399999999999875 478899999999997653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-10 Score=99.19 Aligned_cols=131 Identities=14% Similarity=0.084 Sum_probs=101.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC--C-CCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP--K-GDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~-~D~i~~~~~ 268 (366)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.++..+ + .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3568999999999999999999988888999998 7777777642 579999999998443 2 499987655
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
- .+-...+|....+.|+++++|++.-.. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 3 345678999999999999999885320 25678899999999986
Q ss_pred EEE---ECCCceeEEEEEec
Q 017777 349 QVV---SSAFNTYIMEFLKS 365 (366)
Q Consensus 349 ~~~---~~~~~~~vie~~k~ 365 (366)
+-. ..+-++-+|.+.+.
T Consensus 145 ~E~lv~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLAPS 164 (244)
T ss_dssp EEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEECCEEEEEEEEEeC
Confidence 543 33456677777653
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.1e-11 Score=101.57 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=80.8
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-C-
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-K- 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~- 259 (366)
..++..+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++++..+|+..+.+ .
T Consensus 67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 34555554 5677899999999999999999987 6679999997 7777776542 569999999866444 2
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|++..++|+++ +++.+.|+|||++++...
T Consensus 146 ~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 39999999999876 367889999999999754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=102.37 Aligned_cols=99 Identities=11% Similarity=0.183 Sum_probs=75.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------C---CCceEEEccCCCC--------CCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------F---PGVEHVGGDMFVS--------VPK 259 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~---~~v~~~~~D~~~~--------~~~ 259 (366)
..+..+|||+|||+|.++..++.++|+.+++++|+ +.+++.+++ . ++++++++|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45668999999999999999999999999999998 777765543 1 2589999999864 233
Q ss_pred --CCEEEeccccccC----------------ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 260 --GDAIFIKWICHDW----------------SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 --~D~i~~~~~lh~~----------------~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|+|+++..++.. .......+++.+.++|+|||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 3999997443321 1122468899999999999999885
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=107.39 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=77.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCC-C-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPK-G- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~- 260 (366)
.+...+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +++. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 556789999999999999998886 44589999985577666542 689999999987 6663 3
Q ss_pred CEEEeccccccC-ChHHHHHHHHHHHHhCCCCcEEE
Q 017777 261 DAIFIKWICHDW-SDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 261 D~i~~~~~lh~~-~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
|+|++..+.+.+ .......+|+++.++|||||+++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999987633222 12345678999999999999987
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.7e-11 Score=104.22 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=77.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C-----CC-CCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V-----PK-GDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~-----~~-~D~ 262 (366)
+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|..+ + . +. .|+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 468999999999999999999986 789999997 7776655432 589999999865 2 1 22 399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
|++... ......+|+++.++|+|||.|++.+.....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 987644 234567899999999999999998776543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=103.78 Aligned_cols=120 Identities=14% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCC-CEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-DAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~~l 269 (366)
.+..+|||+|||+|.++..+++..+. +++++|+ +.+++.++++ .+++++++|+.+ ..+.. |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45689999999999999999998776 8999998 8888776542 358999999988 33333 999885332
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
....+++++.++|+|||++++.+...... ......+++.+.++++||++..
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 12478999999999999999987643110 0012367788999999998765
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-10 Score=100.19 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=75.1
Q ss_pred CCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCCC--C---CC--CCEEEeccc
Q 017777 202 LNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFVS--V---PK--GDAIFIKWI 268 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~--~---~~--~D~i~~~~~ 268 (366)
..+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++++++.+|..+. . +. .|+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 579999999999999999987 68899999998 777777654 36899999998762 1 22 399987654
Q ss_pred cccCChHHHHHHHHHHHH-hCCCCcEEEEEcc
Q 017777 269 CHDWSDEHCVKFLKNCYE-ALPVNGKVIVAES 299 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~-~L~pgG~lli~e~ 299 (366)
|. +...+|+++.+ .|+|||+|++.+.
T Consensus 162 -~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 -HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp -CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred -hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 42 34578999997 9999999999765
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=101.27 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=76.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---CCC------CCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---SVP------KGD 261 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~------~~D 261 (366)
.+..+|||||||+|..+..+++.++ +.+++++|+ +.+++.++++ ++++++.+|..+ ..+ ..|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3568999999999999999999875 789999998 8888777652 469999999744 222 239
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+|++....+++. ....+++.+ ++|+|||+|++.+..
T Consensus 137 ~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 999988777643 234677777 999999999886654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=102.64 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=77.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC----C-CCEEEec
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP----K-GDAIFIK 266 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~----~-~D~i~~~ 266 (366)
.+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++. ++++++.+|+.+..+ . .|+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 3568999999999999999999888999999998 8887776542 489999999977322 2 3999875
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
... .....+++.+.+.|+|||+|++-+...
T Consensus 150 ~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp TTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred CcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 432 234578999999999999998866544
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=107.75 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=79.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCC------ccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCC-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGG------IGATLNMIISK-YPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVP- 258 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~- 258 (366)
++.++..+. .+..+||||||| +|..+..+++. +|+.+++++|+ +.+. ...++++++++|+.+ ++.
T Consensus 206 Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~ 280 (419)
T 3sso_A 206 YDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLD 280 (419)
T ss_dssp HHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHH
T ss_pred HHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhh
Confidence 445555443 356899999999 67777777765 59999999998 6553 234789999999987 443
Q ss_pred ------C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 259 ------K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 259 ------~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
. .|+|++.. .|++ .+....|++++++|||||++++.|..
T Consensus 281 ~l~~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 281 RIARRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhhcccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2 39998864 4654 34568899999999999999998875
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-10 Score=102.85 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC--------------CCCCceEEEccCCCC----CCCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP--------------AFPGVEHVGGDMFVS----VPKG 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~D~~~~----~~~~ 260 (366)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ...+++++.+|+.+. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4568999999999999999999999999999997 77766542 235799999998862 3333
Q ss_pred --CEEEeccccccCChHHH-----------HHHHHHHHHhCCCCcEEEEEc
Q 017777 261 --DAIFIKWICHDWSDEHC-----------VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~~~-----------~~~L~~~~~~L~pgG~lli~e 298 (366)
|.|++. ++++.. ..+++++.++|+|||+|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 666532 222211 378999999999999999953
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-10 Score=108.31 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=78.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC-CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG-DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~~l 269 (366)
..+..+|||||||+|.++..+++.. ..+++++|...+++.+++. ++++++.+|+.+ +.+.. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5567899999999999999999873 3489999976666655432 569999999987 55544 999997666
Q ss_pred ccCCh-HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 270 HDWSD-EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 270 h~~~~-~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|.+.. .....+++.+.++|+|||.+++.+.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 66543 2355789999999999999988654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=102.89 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=76.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCC-CCCCC--CEEEeccccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .++.+..+|+.+ +++.+ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 3567999999999999999999988889999998 8888777643 679999999876 55543 999986653
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
..++++.++|+|||++++..+..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24899999999999999987643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.4e-11 Score=102.56 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=100.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCC-CCC-CCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVS-VPK-GDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-~~~-~D~i~~~~~lh~ 271 (366)
..+.+|||||||.|-++..+....|..+++++|+ +.+++.++++ .+.++...|+... .+. +|++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999998 8888776643 4578899999873 333 499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
+.++.....+ ++.++|+|+|.++-.+.-.=..+. .+........|++.+.+.|..+ +..
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs-------------------~gm~~~Y~~~~e~~~~~~g~~~-~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS-------------------KGMFQNYSQSFESQARERSCRI-QRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC--------------------------CHHHHHHHHHHHHHHHHTCCE-EEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC-------------------cchhhHHHHHHHHHHHhcCCce-eee
Confidence 8877655666 899999999999887762111110 0111123678999999999854 444
Q ss_pred ECCCc
Q 017777 352 SSAFN 356 (366)
Q Consensus 352 ~~~~~ 356 (366)
.+++-
T Consensus 270 ~~~nE 274 (281)
T 3lcv_B 270 EIGNE 274 (281)
T ss_dssp EETTE
T ss_pred eecCe
Confidence 44433
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=107.94 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=74.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCCCC--CEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVPKG--DAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~--D~i~~~~~l 269 (366)
.+..+|||||||+|.++..+++. +..+++++|+.++++.+++. ++++++.+|+.+ ++|.. |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 35689999999999999999887 56689999985576666532 459999999988 66633 999987654
Q ss_pred ccC-ChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 270 HDW-SDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 270 h~~-~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
|.+ ..+....+++.+.++|||||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 443 123345789999999999999874
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=100.16 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=79.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCCCCC--C-C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFVSVP--K-G 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~~~--~-~ 260 (366)
...++..+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+..+ . .
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 345555555 6677899999999999999999986 68999997 7777766542 379999999876333 2 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
|+|++..++|++++ ++.+.|+|||++++....
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999998764 477899999999998653
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.3e-10 Score=94.26 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=77.5
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCC----------
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSV---------- 257 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~---------- 257 (366)
.+.++.+.+..+.+..+|||+|||+|.++..+++. ..+++++|+.++ ...++++++++|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 35567777764567789999999999999999887 678999998433 22468999999998731
Q ss_pred ----CCCCEEEeccccccCC----h-----HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 258 ----PKGDAIFIKWICHDWS----D-----EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 258 ----~~~D~i~~~~~lh~~~----~-----~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+..|+|++........ + +....+|+.+.++|||||.+++...
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2339999864322111 1 1235789999999999999997543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-10 Score=105.09 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=80.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-- 258 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-- 258 (366)
...++..+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++. .+++++.+|+.+..+
T Consensus 64 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~ 142 (317)
T 1dl5_A 64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (317)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence 334555555 66778999999999999999999877 478999997 7777766542 569999999877322
Q ss_pred C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 ~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. .|+|++..++|+++ +++.+.|||||++++...
T Consensus 143 ~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 143 SPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred CCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 2 39999999999876 457789999999999754
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-10 Score=105.60 Aligned_cols=98 Identities=17% Similarity=0.292 Sum_probs=77.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC---CCC-C-CCEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV---SVP-K-GDAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~-~-~D~i~~~~~l 269 (366)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|..+ ..+ . .|+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999998 8888877642 689999999865 333 2 3999986544
Q ss_pred ccCChHH--HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 270 HDWSDEH--CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 270 h~~~~~~--~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+...... ...+++.++++|+|||.+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4322221 15789999999999999988653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-10 Score=107.06 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=79.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCC-C-CCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVP-K-GDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~-~-~D~i~~~~~lh~ 271 (366)
...+|||+|||+|.++..+++. +.+++++|+ +.+++.++++ .+++++.+|+.+ ..+ . .|+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4679999999999999999986 568999997 7788777642 358999999988 344 2 399999999987
Q ss_pred ---CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 272 ---WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 272 ---~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
...+....+++++++.|+|||+++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 334667799999999999999999974
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-10 Score=97.60 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=74.7
Q ss_pred CCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC---CC-CC-CCEEEec
Q 017777 202 LNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV---SV-PK-GDAIFIK 266 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~-~~-~D~i~~~ 266 (366)
..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|..+ .. +. .|+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999998 7777766542 479999998765 23 22 3999876
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
... .....+++.+.+.|+|||.|++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 433 234578999999999999999966654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-10 Score=96.28 Aligned_cols=107 Identities=11% Similarity=0.007 Sum_probs=78.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-CCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-VPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~~~ 259 (366)
.+.+.+.......+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ + .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 34444432345689999999999999999887 6678999998 7787776542 368999999876 2 223
Q ss_pred -CCEEEeccccccCChHHHHHHHHHHH--HhCCCCcEEEEEcccc
Q 017777 260 -GDAIFIKWICHDWSDEHCVKFLKNCY--EALPVNGKVIVAESIL 301 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~~~~~~~L~~~~--~~L~pgG~lli~e~~~ 301 (366)
.|+|++...+|. .....+++.+. ++|+|||++++.....
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 399999876643 23456677776 8999999999976543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-10 Score=100.77 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=78.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC--C---CC-CCEEEe
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS--V---PK-GDAIFI 265 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~--~---~~-~D~i~~ 265 (366)
.+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. .+++++.+|..+. . +. .|+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3567999999999999999999999899999998 7777766542 4799999998762 1 22 399998
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
....+ ....+|+++.++|+|||++++.+...
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 77654 24578999999999999999976544
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-10 Score=99.45 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=76.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C------CCCCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V------PKGDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------~~~D~ 262 (366)
+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|..+. . ...|+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 467999999999999999999987 789999998 7777766542 4699999998652 1 22399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|++... ......+++++.++|+|||+|++.+...+
T Consensus 144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 986443 23456789999999999999999876543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=106.36 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=77.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC-----------------CCCceEEE
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA-----------------FPGVEHVG 250 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~v~~~~ 250 (366)
..++..+. ..+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++ ..+++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667789999999999999999998 47789999998 777766543 15799999
Q ss_pred ccCCCC---CCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 251 GDMFVS---VPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 251 ~D~~~~---~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|+.+. ++. .|+|++... ++ ..+++.+.++|+|||++++...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~--~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----NP--HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----ST--TTTHHHHGGGEEEEEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECCC-----CH--HHHHHHHHHhcCCCcEEEEEeC
Confidence 999872 333 299987432 12 1379999999999999998765
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=92.10 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=76.5
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC---------CeEEEecchhHHhhCCCCCCceEE-EccCCC-C---
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS---------IKGINFDLPHVIQDAPAFPGVEHV-GGDMFV-S--- 256 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~D~~~-~--- 256 (366)
++...+..+.+..+|||||||+|.++..+++.++. .+++++|+.++ ....+++++ .+|+.. +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44444543456789999999999999999999865 78999998542 123678999 899876 2
Q ss_pred -----CCC--CCEEEeccccccC----ChHH-----HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 -----VPK--GDAIFIKWICHDW----SDEH-----CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 -----~~~--~D~i~~~~~lh~~----~~~~-----~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+. .|+|++...+|.. .+.. ...+++++.++|+|||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 232 3999986654431 1111 14789999999999999998754
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.3e-10 Score=98.54 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=76.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C----------
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V---------- 257 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~---------- 257 (366)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. .+++++.+|..+ + .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 3568999999999999999999987 689999998 7777766542 358999998754 1 1
Q ss_pred -------CCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 258 -------PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 258 -------~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
...|+|++.... +....+++++.+.|+|||++++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 223999887443 344588999999999999999976544
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-10 Score=100.46 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=74.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC-CC---CEEEec--
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP-KG---DAIFIK-- 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~-~~---D~i~~~-- 266 (366)
...+|||+|||+|.++..++.. |+.+++++|+ +.+++.++++ .+++++++|++++.+ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999998 8888777642 359999999987432 45 999996
Q ss_pred ----------cccccCChH------HHHHHHHHHH-HhCCCCcEEEE
Q 017777 267 ----------WICHDWSDE------HCVKFLKNCY-EALPVNGKVIV 296 (366)
Q Consensus 267 ----------~~lh~~~~~------~~~~~L~~~~-~~L~pgG~lli 296 (366)
.+. +.+.. +...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 222 22221 1127899999 99999999997
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=96.99 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=71.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc--hhHHhhCCCC----------------CCceEEEccCCCC---C
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL--PHVIQDAPAF----------------PGVEHVGGDMFVS---V 257 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~~v~~~~~D~~~~---~ 257 (366)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.++++ +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888753 348999998 5666554321 2688886664431 1
Q ss_pred -----CC-CCEEEeccccccCChHHHHHHHHHHHHhCC---C--CcEEEEE
Q 017777 258 -----PK-GDAIFIKWICHDWSDEHCVKFLKNCYEALP---V--NGKVIVA 297 (366)
Q Consensus 258 -----~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~---p--gG~lli~ 297 (366)
+. .|+|++..++|+.++ ...+++.+.++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 22 399999999988543 4688999999999 9 9988774
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=93.93 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=78.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCC-CCEEEeccccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPK-GDAIFIKWICH 270 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~D~i~~~~~lh 270 (366)
+..+.+|||||||+|-++..+. +..+++++|+ +.+++.+++. .+..+...|... +.+. +|++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 3457899999999999998777 8889999998 8888777643 567889999987 5444 49999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
++.+++....+ ++.+.|+|++.++-.+
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 98776655555 8999999998887776
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=98.54 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=80.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC---------CCCceEEEccCCC-C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA---------FPGVEHVGGDMFV-S 256 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~ 256 (366)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345666665 677789999999999999999986 57889999998 777766543 2479999999877 4
Q ss_pred CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 257 VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 257 ~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++.. |+|++. .++. ..+|+++.++|+|||++++...
T Consensus 167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence 5433 999872 2323 2679999999999999999765
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=5.5e-10 Score=103.30 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=73.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC-------CCceEEEccCCC-CCC-CC-CEEEecccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF-------PGVEHVGGDMFV-SVP-KG-DAIFIKWIC 269 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~-D~i~~~~~l 269 (366)
.+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +.+ +. |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 34679999999999999988876 44589999985566655432 579999999987 566 33 999987654
Q ss_pred ccCC-hHHHHHHHHHHHHhCCCCcEEEE
Q 017777 270 HDWS-DEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 270 h~~~-~~~~~~~L~~~~~~L~pgG~lli 296 (366)
|.+. ......+|+.+.++|+|||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 22345789999999999999974
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=97.47 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=74.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC--C------CceEE--EccCCC-CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF--P------GVEHV--GGDMFV-SV 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~-~~ 257 (366)
+..+.+. ..+.+..+|||||||+|.++..+++. .+++++|+.++...+++. . ++.++ ++|+.+ +.
T Consensus 63 L~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 138 (265)
T 2oxt_A 63 LAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPV 138 (265)
T ss_dssp HHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCC
T ss_pred HHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCC
Confidence 4455554 22556789999999999999988886 589999984454333222 2 68888 899886 42
Q ss_pred CCCCEEEeccccccCChH---H--HHHHHHHHHHhCCCCc--EEEEEccc
Q 017777 258 PKGDAIFIKWICHDWSDE---H--CVKFLKNCYEALPVNG--KVIVAESI 300 (366)
Q Consensus 258 ~~~D~i~~~~~lh~~~~~---~--~~~~L~~~~~~L~pgG--~lli~e~~ 300 (366)
...|+|++... +..+.. + ...+|+.+.++|+||| .+++....
T Consensus 139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 23499999766 443221 1 1248999999999999 88885543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-10 Score=95.57 Aligned_cols=106 Identities=12% Similarity=-0.004 Sum_probs=77.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCC-----
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSV----- 257 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~----- 257 (366)
.+.+.+.......+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++. ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 3444443234568999999999999998887 45578999998 8888777642 46999999987621
Q ss_pred -CC-CCEEEeccccccCChHHHHHHHHHH--HHhCCCCcEEEEEccc
Q 017777 258 -PK-GDAIFIKWICHDWSDEHCVKFLKNC--YEALPVNGKVIVAESI 300 (366)
Q Consensus 258 -~~-~D~i~~~~~lh~~~~~~~~~~L~~~--~~~L~pgG~lli~e~~ 300 (366)
+. .|+|++...+|.... ..+++.+ .++|+|||.+++....
T Consensus 113 ~~~~fD~i~~~~~~~~~~~---~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQEI---VSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp TTCCEEEEEECCCGGGCCH---HHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cCCCCCEEEECCCCCchhH---HHHHHHHHHhcccCCCCEEEEEeCC
Confidence 23 399999877664333 3456666 8889999999987554
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-10 Score=97.63 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--CCCC-CCEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--SVPK-GDAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~-~D~i~~~~~ 268 (366)
+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|..+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999987 789999998 8888776642 469999999865 2222 588887632
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
......+++++.++|+|||++++.+....
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 22346889999999999999998765543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=101.25 Aligned_cols=110 Identities=18% Similarity=0.067 Sum_probs=84.2
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~ 258 (366)
....++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.++++ .+++++++|+.+ +.+
T Consensus 191 la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 191 LAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 3444555554 7778899999999999999999988 8899999998 8888777643 379999999987 433
Q ss_pred -C-CCEEEeccccccC-C-hHH----HHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 -K-GDAIFIKWICHDW-S-DEH----CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 -~-~D~i~~~~~lh~~-~-~~~----~~~~L~~~~~~L~pgG~lli~e 298 (366)
. .|+|+++..++.. . ..+ ...+++.+++.|+|||+++++.
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 3999996554321 1 111 2688999999999999999964
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-09 Score=97.84 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=71.2
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-----hhHHhhCC--CC--CCceEEEc-cCCC-CCCC
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-----PHVIQDAP--AF--PGVEHVGG-DMFV-SVPK 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~~v~~~~~-D~~~-~~~~ 259 (366)
.+.+. ..+.+..+|||||||+|.++..++++ .+++++|+ +..++... .. +++.++++ |+.. +...
T Consensus 73 ~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~ 148 (305)
T 2p41_A 73 WFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 148 (305)
T ss_dssp HHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCC
Confidence 44444 32456789999999999999999886 37888887 43333222 12 56899999 8876 3333
Q ss_pred CCEEEeccccc---cCChHH-HHHHHHHHHHhCCCCcEEEEE
Q 017777 260 GDAIFIKWICH---DWSDEH-CVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 ~D~i~~~~~lh---~~~~~~-~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|+|++...++ ...+.. ...+|+.+.++|||||.+++.
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 49999976653 212222 225899999999999988874
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=97.79 Aligned_cols=106 Identities=15% Similarity=-0.006 Sum_probs=74.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCC--C------CceEE--EccCCC-CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAF--P------GVEHV--GGDMFV-SV 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~-~~ 257 (366)
+..+.+... +.+..+|||||||+|.++..+++. .+++++|+.++...+++. . ++.++ .+|+.+ +.
T Consensus 71 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 146 (276)
T 2wa2_A 71 LAWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEP 146 (276)
T ss_dssp HHHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCC
T ss_pred HHHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCC
Confidence 445555422 556789999999999999999886 589999984454333222 2 68899 899876 42
Q ss_pred CCCCEEEeccccccCChH----H-HHHHHHHHHHhCCCCc--EEEEEcc
Q 017777 258 PKGDAIFIKWICHDWSDE----H-CVKFLKNCYEALPVNG--KVIVAES 299 (366)
Q Consensus 258 ~~~D~i~~~~~lh~~~~~----~-~~~~L~~~~~~L~pgG--~lli~e~ 299 (366)
...|+|++... +..+.. . ...+|+.+.++|+||| .+++...
T Consensus 147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 23499999876 433221 1 1247999999999999 8888544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-10 Score=98.00 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C------C-CC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V------P-KG 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------~-~~ 260 (366)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ ++++++.+|..+ + . + ..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999987 789999998 7777766542 479999999865 2 1 2 24
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+|++.... .....+++.+.++|+|||.|++.+...
T Consensus 158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 999976432 234688999999999999999876543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=97.99 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=76.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CC-CC-CCEEEec-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SV-PK-GDAIFIK- 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-~~-~D~i~~~- 266 (366)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+++++++|..+ +. +. .|+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56678999999999999999999875 478999998 7777766542 478999999876 32 32 3999873
Q ss_pred -----cccccCC-------hHH-------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 267 -----WICHDWS-------DEH-------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 267 -----~~lh~~~-------~~~-------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.+++..+ .++ ...+|+++.+.|||||+|++....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 2343322 221 258999999999999999997643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.2e-10 Score=96.15 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=74.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC------CCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCCCCC-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP------SIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVSVPK- 259 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~~~- 259 (366)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..++.+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45668999999999999999998765 368999997 777776654 24799999998875543
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|++...+|+++ +++.+.|+|||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 39999999998765 567889999999998653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-10 Score=93.71 Aligned_cols=95 Identities=12% Similarity=-0.014 Sum_probs=72.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C-CceEEEccCCCCC------C-CCCEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P-GVEHVGGDMFVSV------P-KGDAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~------~-~~D~i~~~~ 267 (366)
+..+|||+|||+|.++..+++..+. ++++|+ +.+++.+++. . +++++.+|+.+.. + ..|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4679999999999999999998665 999998 8888777642 2 7999999987521 1 249999988
Q ss_pred ccccCChHHHHHHHHHHH--HhCCCCcEEEEEcccc
Q 017777 268 ICHDWSDEHCVKFLKNCY--EALPVNGKVIVAESIL 301 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~--~~L~pgG~lli~e~~~ 301 (366)
.+|. ..+ .+++.+. ++|+|||.+++.....
T Consensus 119 ~~~~-~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAM-DLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTTS-CTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCch-hHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 7762 222 3455555 9999999999876543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-10 Score=96.88 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=73.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC--CC---CC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV--SV---PK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~--~~---~~-~D~i~~ 265 (366)
+..+|||+|||+|.++..++.... .+++++|+ +.+++.++++ ++++++.+|+.+ +. .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 357999999999999998777643 48999998 7888777542 478999999865 21 24 599999
Q ss_pred ccccccCChHHHHHHHHHH--HHhCCCCcEEEEEccc
Q 017777 266 KWICHDWSDEHCVKFLKNC--YEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~--~~~L~pgG~lli~e~~ 300 (366)
...+| .. ....+++.+ .++|+|||.+++....
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 87765 23 345778888 5679999999987654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-09 Score=92.08 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=78.1
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCC-CC-
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSV-PK- 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-~~- 259 (366)
..++..+. .....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. +++++..+|+.+.. +.
T Consensus 81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 34555555 667789999999999999999998 678999997 7777766542 57999999998754 43
Q ss_pred C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. |+|++. .++. ..+++++.++|+|||++++...
T Consensus 158 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFVD-----VREP--WHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp CBSEEEEC-----SSCG--GGGHHHHHHHBCTTCEEEEEES
T ss_pred cccEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 3 999872 2322 3679999999999999999775
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-10 Score=99.96 Aligned_cols=99 Identities=20% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--C-CCC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--S-VPK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~-~~~-~D~i~ 264 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ + .+. .|+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998777889999998 777776543 2579999999865 1 233 39999
Q ss_pred eccccccCChHHH--HHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e 298 (366)
+....+..+.... ..+++.++++|+|||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8654433233222 589999999999999999863
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-09 Score=93.91 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=74.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-----CCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCCC----
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-----PSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVSV---- 257 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~---- 257 (366)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ ..+++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5679999997 777776653 247999999987633
Q ss_pred -C--CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 258 -P--KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 258 -~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+ ..|+|++...+|++ ++++.+.|+|||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 2 23999999998864 4677889999999999754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.1e-11 Score=104.61 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=95.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC-CCCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP-KGDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~D~i~~~~~lh 270 (366)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++++|+.+ +.+ ..|+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 56899999999999999999864 78999998 8888776542 479999999887 422 239999999998
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
+.++.. ..+.+++++|+|||.+++........ +.... --.....+++..++...|...+..
T Consensus 156 ~~~~~~--~~~~~~~~~L~pgG~~i~~~~~~~~~-------------~~~~~----lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSPDGFEIFRLSKKITN-------------NIVYF----LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSSCHHHHHHHHHHHCS-------------CEEEE----EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchhh--hHHHHHHhhcCCcceeHHHHHHhhCC-------------ceEEE----CCCCCCHHHHHHHhccCCCEEEEe
Confidence 866543 36778999999999955533211000 00000 011234677778887777666655
Q ss_pred EECCCceeEEEE
Q 017777 351 VSSAFNTYIMEF 362 (366)
Q Consensus 351 ~~~~~~~~vie~ 362 (366)
....+...-+.+
T Consensus 217 ~~~~~~~k~~~~ 228 (241)
T 3gdh_A 217 NFLNNKLKTITA 228 (241)
T ss_dssp EEETTEEEEEEE
T ss_pred hhhcCccceEEE
Confidence 555444443333
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-09 Score=100.27 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=73.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-CC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-PK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~-~D~i~ 264 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999998878889999998 778776653 3689999999865 22 22 39999
Q ss_pred eccccccCChH--HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+....+..+.. ....++++++++|+|||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 86544332221 12478999999999999999865
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-10 Score=101.74 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=75.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC---CCCC--CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV---SVPK--GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~--~D~i 263 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ ..+. .|+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999878889999998 888776653 2589999999765 2332 3999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhCCCCcEEEEE
Q 017777 264 FIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 264 ~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~ 297 (366)
++....+..+.+. ...+++.++++|+|||.|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854422111111 358999999999999999986
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.8e-10 Score=100.91 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCC--CC-CC-CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFV--SV-PK-GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~~-~~-~D~i 263 (366)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999877889999998 777766542 3589999999875 22 23 3999
Q ss_pred Eecccccc---CChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHD---WSDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~---~~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
++....|. -+... ...++++++++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99766554 11111 2588999999999999999964
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-10 Score=98.95 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=74.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-CC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-PK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~-~D~i~~ 265 (366)
++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998767789999998 888776543 2689999999875 22 23 399998
Q ss_pred ccccccCChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 266 KWICHDWSDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 266 ~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
....+..+... ...+++.++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 65443322111 1478999999999999998863
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-09 Score=91.78 Aligned_cols=93 Identities=20% Similarity=0.188 Sum_probs=73.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCCC-CC--CCE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVSV-PK--GDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~-~~--~D~ 262 (366)
..+..+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|..... +. .|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3467899999999999999999885 6679999998 777776643 247999999987632 22 399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|++...++++. +++.+.|+|||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 99998887653 567899999999999754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-09 Score=97.57 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC----------------CCCCceEEEccCCCC--CCC-
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP----------------AFPGVEHVGGDMFVS--VPK- 259 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~D~~~~--~~~- 259 (366)
..+.+|||||||+|.++..+++. +..+++++|+ +.+++.++ ..++++++.+|..+. .+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999988 8789999998 77776543 235789999997641 133
Q ss_pred CCEEEeccccccCChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 260 GDAIFIKWICHDWSDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+|++....+..+... ...++++++++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 39999865543222222 2578999999999999998863
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-09 Score=100.39 Aligned_cols=99 Identities=20% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCCC---CCC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFVS---VPK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~~~-~D~i~ 264 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+. .|+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998778889999998 777776542 25799999998652 223 39999
Q ss_pred eccccccCChHHH--HHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e 298 (366)
+...-+..+.... ..++++++++|+|||.+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8643221112211 588999999999999999863
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-09 Score=95.65 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C------CCCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V------PKGD 261 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------~~~D 261 (366)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|..+. . ...|
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4568999999999999999999887 789999998 7777766532 5799999997651 1 2239
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
+|++... ......+++++.+.|+|||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 9988543 2334688999999999999999977544
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-09 Score=100.33 Aligned_cols=99 Identities=20% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-CC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-PK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~-~D~i~ 264 (366)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999998878889999998 777776542 2578999999865 22 22 39999
Q ss_pred eccccccCChHHH--HHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSDEHC--VKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~~~~--~~~L~~~~~~L~pgG~lli~e 298 (366)
+...-+.-++... ..+++.++++|+|||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8554332222221 589999999999999999864
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=93.05 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC--CCCC--CCEEEecccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV--SVPK--GDAIFIKWIC 269 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~~--~D~i~~~~~l 269 (366)
+..+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++ ++++++++|+.+ +.+. .|+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999998877643 38999998 8888877642 479999999876 3332 3999998775
Q ss_pred ccCChHHHHHHHHHHHH--hCCCCcEEEEEccc
Q 017777 270 HDWSDEHCVKFLKNCYE--ALPVNGKVIVAESI 300 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~--~L~pgG~lli~e~~ 300 (366)
|. . ....+++.+.+ +|+|||++++....
T Consensus 133 ~~-~--~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 RR-G--LLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ST-T--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CC-C--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 52 2 23467788766 49999999886653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-09 Score=94.85 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=76.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC--C-C------CC-C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV--S-V------PK-G 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------~~-~ 260 (366)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ++++++.+|..+ + . +. .
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3568999999999999999999987 789999998 7777766542 479999999765 2 1 22 3
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+|++... ......+++.+.+.|+|||.|++.+...
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99987532 2345689999999999999998866543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-09 Score=99.14 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=69.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCCC-CCCCC-CEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMFV-SVPKG-DAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~ 271 (366)
++.+|||||||+|.++...++. ...+++++|..++++.|++ .++|+++.+|+.+ +.|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 3578999999999998866664 3347999997556555543 2679999999988 67765 99987433332
Q ss_pred CChH-HHHHHHHHHHHhCCCCcEEEE
Q 017777 272 WSDE-HCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 272 ~~~~-~~~~~L~~~~~~L~pgG~lli 296 (366)
+..+ ....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 2222 355788888999999998764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-09 Score=95.62 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=75.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC---C--C----CCCCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV---S--V----PKGDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~--~----~~~D~ 262 (366)
+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|..+ . . ...|+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999987 789999998 7777766542 469999999754 1 1 22399
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|++... ......+++++.++|+|||+|++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 987644 2345688999999999999999977654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-09 Score=89.12 Aligned_cols=88 Identities=20% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCCCCCC-CCEEEeccccccCChH
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFVSVPK-GDAIFIKWICHDWSDE 275 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~-~D~i~~~~~lh~~~~~ 275 (366)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ .+. .|+|+++..+|++++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999886 4457999998 8888877653 389999999876 333 3999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 017777 276 HCVKFLKNCYEAL 288 (366)
Q Consensus 276 ~~~~~L~~~~~~L 288 (366)
....+++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 4457899999998
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-09 Score=97.08 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=71.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC--CC-CC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV--SV-PK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~-~D~i~~ 265 (366)
.+.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999998877889999998 777766543 2689999999765 22 22 399997
Q ss_pred ccccccCChH---HHHHHHHHHHHhCCCCcEEEEE
Q 017777 266 KWICHDWSDE---HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 266 ~~~lh~~~~~---~~~~~L~~~~~~L~pgG~lli~ 297 (366)
...-+..... ....++++++++|+|||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 5332211111 1158899999999999999986
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-09 Score=96.61 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=78.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC-CCCC-CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS-VPKG-DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-~~~~-D~i~~~~~l 269 (366)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.++++ .++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999998 8888777542 5788999998774 3223 999886543
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
....+++.+.+.|+|||.+++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 23467999999999999999887654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.79 E-value=8.1e-09 Score=93.44 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=74.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 259 (366)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 445666665 6677899999999999999999975 47888887 7777655431 479999999987 6666
Q ss_pred CCEEEeccccccCChHHHHHHHH--------------HH--HHhCCCCcEE
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLK--------------NC--YEALPVNGKV 294 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~--------------~~--~~~L~pgG~l 294 (366)
.|+|+++.. ++|..+....+|. ++ +.+++|||++
T Consensus 94 fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 94 FDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp CSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred hcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 699888544 4444444445543 22 4689999965
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.1e-09 Score=91.85 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=72.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCCCCCCCCEEEeccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFVSVPKGDAIFIKWI 268 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~~~~D~i~~~~~ 268 (366)
.++.+|||||||+|..+..+++. + .+++++|+ +.+++.++++ ++++++.+|..+.....|+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~- 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ- 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS-
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC-
Confidence 35689999999999999999988 7 89999998 8899888753 478999999876333349999852
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+++. .+++.++++|+|||.+++.
T Consensus 148 ----~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 148 ----EPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ----CCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred ----CChH--HHHHHHHHhcCCCcEEEEE
Confidence 3332 4899999999999999985
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=91.12 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=81.7
Q ss_pred CCCCCeEEEEeC------CccHHHHHHHHhCC-CCeEEEecchhHHhhCCCCCCceE-EEccCCC-CCCCC-CEEEeccc
Q 017777 199 FEGLNSVVDVGG------GIGATLNMIISKYP-SIKGINFDLPHVIQDAPAFPGVEH-VGGDMFV-SVPKG-DAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~D~~~-~~~~~-D~i~~~~~ 268 (366)
+.+..+|||+|| |+|. ..+++..| +.+++++|+.+. .+++++ +++|+.+ +++.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCC
Confidence 566789999999 5577 44566666 689999998333 247999 9999987 44443 99998643
Q ss_pred ccc-----CC----hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHH
Q 017777 269 CHD-----WS----DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 269 lh~-----~~----~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 339 (366)
.+. .+ .+....+|+.++++|||||++++...... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 00 12345789999999999999998643110 12367788
Q ss_pred HHHcCCceeEEE
Q 017777 340 AKAAGFQGFQVV 351 (366)
Q Consensus 340 l~~aGf~~~~~~ 351 (366)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888999877765
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-09 Score=106.95 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=78.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC---CCC--CCCEEEecc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV---SVP--KGDAIFIKW 267 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~--~~D~i~~~~ 267 (366)
.++.+|||||||.|.++..|++. +.+++|+|. +.+++.|+.+ .+++|.++++.+ ..+ ..|+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999985 678999998 8888776532 358999998865 233 249999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
+|||.++++....+.++.+.|+++|..++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998876555566677777777777766654433
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.4e-08 Score=92.82 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=90.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC--CCEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK--GDAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~--~D~i~~~~ 267 (366)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.++++ ++++++++|+.+ +.+. .|+|+++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 56778999999999999999999887678999998 8888777643 479999999987 5543 39999976
Q ss_pred ccccCC-----hHH-HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 268 ICHDWS-----DEH-CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 268 ~lh~~~-----~~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
.++... .++ ...+++.++++| ||+++++.. +.+.+.+.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 544311 111 257889999998 555555421 2455677889
Q ss_pred HcCCceeEEEECC
Q 017777 342 AAGFQGFQVVSSA 354 (366)
Q Consensus 342 ~aGf~~~~~~~~~ 354 (366)
+.||+..+...+.
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 9999988876663
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.73 E-value=6e-08 Score=83.08 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=68.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----C-CceEEEccCCCCCCCCCEEEeccccccCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----P-GVEHVGGDMFVSVPKGDAIFIKWICHDWS 273 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~~~~D~i~~~~~lh~~~ 273 (366)
.+..+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++. . +++++.+|+.+.....|+|++...+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 4568999999999999999988733 37999998 7777766542 2 78999999876212349999998888876
Q ss_pred hHHHHHHHHHHHHhC
Q 017777 274 DEHCVKFLKNCYEAL 288 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L 288 (366)
......+|+++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 544467899999998
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-08 Score=95.83 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=79.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCC------CCCceEEEccCCC-C--CC-C-CCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-S--VP-K-GDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~~-~-~D~i~~ 265 (366)
..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|..+ + ++ . .|+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999877 79999997 666665543 2579999999876 3 44 3 399986
Q ss_pred ------ccccccCChHH--------------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 266 ------KWICHDWSDEH--------------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 266 ------~~~lh~~~~~~--------------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
..+++..++.. ...+|+++.+.|||||+|++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34555544321 1578999999999999999987644
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=88.82 Aligned_cols=103 Identities=13% Similarity=0.197 Sum_probs=72.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC-CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK-GD 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~-~D 261 (366)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 455666665 5677899999999999999999986 67899997 777766543 3689999999987 6664 35
Q ss_pred EEEeccccccCChHHHHHHH--------------HHHHHhCCCCcEE
Q 017777 262 AIFIKWICHDWSDEHCVKFL--------------KNCYEALPVNGKV 294 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L--------------~~~~~~L~pgG~l 294 (366)
..++.+.-++++.+-...++ ..+.+.++|+|++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 45555555555444333333 2366667776643
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-08 Score=94.25 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=78.0
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC-CC-CEEEe
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP-KG-DAIFI 265 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~-~~-D~i~~ 265 (366)
..+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++++|+++..+ .. |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 34444444 3345699999999999999999887 6789999998 7777666 689999999987333 33 99999
Q ss_pred cccccc----------CChHHH-----------------HHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHD----------WSDEHC-----------------VKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~----------~~~~~~-----------------~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+--+.. ++++.. ..+++++.+.|+|||+++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 633221 222221 2679999999999999988754
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-08 Score=94.77 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=78.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCC-----CeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCC-C-CCEEEec
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPS-----IKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVP-K-GDAIFIK 266 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~-~-~D~i~~~ 266 (366)
....+|||+|||+|.++..+++..+. .+++++|+ +.+++.++.. .++.+.++|.+.+.+ . .|+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35679999999999999999988764 68899998 7777766542 368999999987543 3 3999999
Q ss_pred cccccCChHHH----------------HHHHHHHHHhCCCCcEEEEEcc
Q 017777 267 WICHDWSDEHC----------------VKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 267 ~~lh~~~~~~~----------------~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88776654432 2689999999999999988764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.5e-09 Score=92.42 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=78.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC-CCCC-CC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV-SVPK-GD 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~-~D 261 (366)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. ..
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 445666665 6677899999999999999999975 68999998 7788777654 578999999987 6553 33
Q ss_pred EEEeccccccCChHHHHHHH--------------HHHHHhCCCCcEEEEEcc
Q 017777 262 AIFIKWICHDWSDEHCVKFL--------------KNCYEALPVNGKVIVAES 299 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L--------------~~~~~~L~pgG~lli~e~ 299 (366)
..++++.-++.+.+....++ +.+.++|+|||++.++..
T Consensus 95 f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 95 YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred cEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 34455554554444333433 668999999998777543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-08 Score=90.86 Aligned_cols=100 Identities=21% Similarity=0.273 Sum_probs=70.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~~ 260 (366)
...+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 445666565 667789999999999999999886 458999998 777766543 2589999999987 55556
Q ss_pred CEEEeccccccCChHHHHHHH---------------HHHHHhCCCCc
Q 017777 261 DAIFIKWICHDWSDEHCVKFL---------------KNCYEALPVNG 292 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L---------------~~~~~~L~pgG 292 (366)
|+|+++. .+++..+....+| ..+.++++|+|
T Consensus 108 D~Vv~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 9998754 4455666555666 34678888877
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=92.25 Aligned_cols=103 Identities=10% Similarity=0.061 Sum_probs=75.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CC-----CC-CCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SV-----PK-GDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-----~~-~D~i 263 (366)
..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ .+++++.+|..+ +. +. .|+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998876 78999998 7776665432 479999999876 22 32 3999
Q ss_pred Eec------ccccc---CCh-------HHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 264 FIK------WICHD---WSD-------EHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 264 ~~~------~~lh~---~~~-------~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
++. .+++. |+. .....+|+++.+.|||||+|++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 886 23321 111 112588999999999999999976543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.65 E-value=6.4e-08 Score=89.35 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=71.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C--CceEEEccCCCCC------C-CCCEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P--GVEHVGGDMFVSV------P-KGDAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------~-~~D~i~ 264 (366)
+..+|||+|||+|.++..++... .+++++|+ +.+++.++++ . +++++++|+++.. . ..|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999853 48999998 8888777642 2 4999999987621 2 349999
Q ss_pred eccc----------cccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IKWI----------CHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~----------lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+..- ++. .+....+++++.++|+|||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 8422 111 23456899999999999999877554
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.8e-07 Score=82.93 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=97.3
Q ss_pred hHHHHHHhccCCC-----CCCeEEEEeCCccHHHHHH--------HHhC-------CCCeEEEecchhH--------Hhh
Q 017777 188 TMKKILENYKGFE-----GLNSVVDVGGGIGATLNMI--------ISKY-------PSIKGINFDLPHV--------IQD 239 (366)
Q Consensus 188 ~~~~~~~~~~~~~-----~~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~ 239 (366)
.+++.+..+. .. +..+|+|+|||+|..+..+ .+++ |.++++.-|+|.- +..
T Consensus 35 ~~~~ai~~l~-~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~ 113 (374)
T 3b5i_A 35 LLEETLENVH-LNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113 (374)
T ss_dssp HHHHHHHTSC-CCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCC
T ss_pred HHHHHHHHhh-ccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhh
Confidence 4444455554 22 2578999999999888776 2232 7778888887422 111
Q ss_pred CCC-----------CCC---ceEEEccCCC-CCCCC--CEEEeccccccCCh----------------------------
Q 017777 240 APA-----------FPG---VEHVGGDMFV-SVPKG--DAIFIKWICHDWSD---------------------------- 274 (366)
Q Consensus 240 a~~-----------~~~---v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~---------------------------- 274 (366)
.++ ..+ +.-+++.+.. .+|.. |+++++.+||++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~ 193 (374)
T 3b5i_A 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTT 193 (374)
T ss_dssp BCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHH
T ss_pred hhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHH
Confidence 111 001 2235566666 67765 99999999999862
Q ss_pred --------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhh--hh--hhhcchhhHhhCC-------------CCc
Q 017777 275 --------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS--KV--VIHVDCIMLAHNP-------------GGK 329 (366)
Q Consensus 275 --------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~-------------~~~ 329 (366)
.+...+|+..++.|+|||++++.-...++........ .. ......+...... --.
T Consensus 194 ~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y 273 (374)
T 3b5i_A 194 TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVY 273 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcccc
Confidence 1345679999999999999999877554421111000 00 0000001100000 012
Q ss_pred cCCHHHHHHHHH-HcCCceeEEE
Q 017777 330 ERTEQEFRALAK-AAGFQGFQVV 351 (366)
Q Consensus 330 ~~t~~e~~~ll~-~aGf~~~~~~ 351 (366)
.++.+|++++++ +.||++..+.
T Consensus 274 ~ps~~E~~~~l~~~~~F~I~~le 296 (374)
T 3b5i_A 274 APSLQDFKEVVDANGSFAIDKLV 296 (374)
T ss_dssp CCCHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCcEEEEEE
Confidence 368999999998 5899987654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.9e-08 Score=86.51 Aligned_cols=120 Identities=14% Similarity=0.084 Sum_probs=87.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~ 268 (366)
..++.+|||+|||+|.++..++.. +..+++++|+ |.+++.++++ ++++++.+|..+-.++ .|.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 346789999999999999998876 4568999998 7777766542 6799999998873333 398886532
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
. ....+|..+.++|+|||.|.+.+....+. ......+.++++.++.|+++.
T Consensus 202 ~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred C------cHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence 2 12367888899999999998877654221 001235667788899999753
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5.9e-08 Score=92.95 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=77.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-C--CCC--CCEEEe--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-S--VPK--GDAIFI-- 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~~~--~D~i~~-- 265 (366)
..+..+|||+|||+|..+..+++..++.+++++|+ +..++.+++. .+++++++|..+ + ++. .|+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 55678999999999999999999998889999997 6666555432 358899999876 2 332 399986
Q ss_pred ----ccccccCChH-------H-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 266 ----KWICHDWSDE-------H-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 266 ----~~~lh~~~~~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
..+++..++. + ...+|+++.+.|||||+|++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2445544432 1 1488999999999999999987543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.2e-07 Score=88.77 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=75.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CCCC-CEEEec--
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VPKG-DAIFIK-- 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~~-- 266 (366)
...+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++.++.+|..+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999998 7777665532 578999999876 3 3333 999872
Q ss_pred ----cccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 ----WICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ----~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.+++ +|+.++ ..++|+.+.++|||||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 2332 233222 2478999999999999999876543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.8e-08 Score=92.72 Aligned_cols=101 Identities=8% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CCC-CCEEEe-
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VPK-GDAIFI- 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~-~D~i~~- 265 (366)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . +.++.+|..+ + .+. .|+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998865 68999998 7777766542 4 8889988765 2 233 399985
Q ss_pred -----ccccc-------cCChHHH-------HHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 -----KWICH-------DWSDEHC-------VKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 -----~~~lh-------~~~~~~~-------~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..+++ .|+.++. ..+|+.+.+.|||||+|+...-.
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 12222 2222222 67999999999999999986543
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=79.77 Aligned_cols=151 Identities=16% Similarity=0.115 Sum_probs=89.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHh----------------CCCCeEEEecchh-HH-hhCCCCC------CceE---EEcc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISK----------------YPSIKGINFDLPH-VI-QDAPAFP------GVEH---VGGD 252 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~-~~a~~~~------~v~~---~~~D 252 (366)
++..+|+|+||++|..+..+... .|.+.++.-|+|. .. ...+..+ +..| +++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999765543332 4666777778732 11 1112111 2233 4567
Q ss_pred CCC-CCCCC--CEEEeccccccCCh-------------------------------HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 253 MFV-SVPKG--DAIFIKWICHDWSD-------------------------------EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 253 ~~~-~~~~~--D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.. .+|.. |+++++.+||++++ .+...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 766 67765 99999999998754 133466999999999999999977
Q ss_pred cccCCCCCCch-----hh-hhhhhcchhhHhh---------CCCCccCCHHHHHHHHHHcCC-ceeEE
Q 017777 299 SILPVTPDTSL-----AS-KVVIHVDCIMLAH---------NPGGKERTEQEFRALAKAAGF-QGFQV 350 (366)
Q Consensus 299 ~~~~~~~~~~~-----~~-~~~~~~~~~~~~~---------~~~~~~~t~~e~~~ll~~aGf-~~~~~ 350 (366)
...++...... .. ....+.++..... ..--..++.+|++++++++|. ++...
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 65544311000 00 0111111111000 001124589999999999965 65543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-06 Score=78.53 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=90.3
Q ss_pred CCeEEEEeCCccHHHHHHHHh-----------------CCCCeEEEecch-----------h-HHhhC----CCCCCceE
Q 017777 202 LNSVVDVGGGIGATLNMIISK-----------------YPSIKGINFDLP-----------H-VIQDA----PAFPGVEH 248 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a----~~~~~v~~ 248 (366)
..+|+|+||++|..+..+... .|.+.++.-|+| + ..+.. ....+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 688999999999988877666 366777777876 1 11111 11123344
Q ss_pred E---EccCCC-CCCCC--CEEEeccccccCChHH-------------------------H------------HHHHHHHH
Q 017777 249 V---GGDMFV-SVPKG--DAIFIKWICHDWSDEH-------------------------C------------VKFLKNCY 285 (366)
Q Consensus 249 ~---~~D~~~-~~~~~--D~i~~~~~lh~~~~~~-------------------------~------------~~~L~~~~ 285 (366)
+ ++.+.. .+|.. |+++++.+||++++.. . ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 456665 67765 9999999999875321 1 23378889
Q ss_pred HhCCCCcEEEEEccccCCC--CCCchhhhhhhhcchhhHh---------hCCCCccCCHHHHHHHHHHcC-CceeEEE
Q 017777 286 EALPVNGKVIVAESILPVT--PDTSLASKVVIHVDCIMLA---------HNPGGKERTEQEFRALAKAAG-FQGFQVV 351 (366)
Q Consensus 286 ~~L~pgG~lli~e~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~t~~e~~~ll~~aG-f~~~~~~ 351 (366)
+.|+|||++++.-...++. ...........+.++.... ...--..++.+|++++++++| |++....
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999987755442 1110000011111111100 000122368999999999985 7776543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=77.78 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=64.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCCC--CE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPKG--DA 262 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~--D~ 262 (366)
...+++.++ .....+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++++|+.+ ++++. +.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 445666665 667789999999999999999986 4568999998 7888777654 578999999987 66542 56
Q ss_pred EEeccccccCChH
Q 017777 263 IFIKWICHDWSDE 275 (366)
Q Consensus 263 i~~~~~lh~~~~~ 275 (366)
+++.+.-++.+.+
T Consensus 98 ~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 98 KVVGNLPYNVASL 110 (249)
T ss_dssp EEEEECCTTTHHH
T ss_pred EEEEECchhccHH
Confidence 6667776765544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-07 Score=88.19 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=74.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC------CCceEEEccCCC-C--CCC-CCEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-S--VPK-GDAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~-~D~i~~~ 266 (366)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .++.++.+|..+ + .+. .|+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999988654 68999998 7777665532 568888888765 2 233 3999873
Q ss_pred c------cccc-------CChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 267 W------ICHD-------WSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 267 ~------~lh~-------~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
- ++.. |+.++ ...+|+.+.+.|||||+|+...-..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2222 11111 1378999999999999999876543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.7e-07 Score=84.85 Aligned_cols=111 Identities=10% Similarity=-0.061 Sum_probs=79.1
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC--------------------------------------CeEE
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS--------------------------------------IKGI 229 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 229 (366)
.+..++.... +.+...|||.+||+|.++..++....+ .+++
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 3445665555 788899999999999999888765443 5699
Q ss_pred Eecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC-CCEEEecccccc-CC-hHHHHHHHHHHHHhCCC--CcEEE
Q 017777 230 NFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK-GDAIFIKWICHD-WS-DEHCVKFLKNCYEALPV--NGKVI 295 (366)
Q Consensus 230 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p--gG~ll 295 (366)
++|+ +.+++.++++ .+++++++|+.+ +.+. .|+|+++--++. +. .++...+.+.+.+.|++ ||.++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9998 8888777642 469999999987 4443 399999844432 11 23445666666666665 88888
Q ss_pred EEcc
Q 017777 296 VAES 299 (366)
Q Consensus 296 i~e~ 299 (366)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8754
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-07 Score=89.68 Aligned_cols=110 Identities=16% Similarity=0.093 Sum_probs=79.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------------CCCeEEEecc-hhHHhhCCCC------C--Cc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------------PSIKGINFDL-PHVIQDAPAF------P--GV 246 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--~v 246 (366)
...+++.+. .....+|||.|||+|.++..+.+.. +..+++++|+ +.+++.++.. . ++
T Consensus 160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 334444444 4456799999999999999888764 4467999998 7777665431 2 68
Q ss_pred eEEEccCCC-CCCC-CCEEEeccccccCChH---------------HHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 247 EHVGGDMFV-SVPK-GDAIFIKWICHDWSDE---------------HCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 247 ~~~~~D~~~-~~~~-~D~i~~~~~lh~~~~~---------------~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+.++|.+. +... .|+|+++-.++..... ....+++.+.+.|+|||++.++-+
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 899999887 3333 3999998666542211 124789999999999999988754
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-07 Score=88.57 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=73.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCC------CC-CCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSV------PK-GDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~------~~-~D~i~~~ 266 (366)
+..+|||+|||+|.++..++.. ..+++++|+ +.+++.++++ .+++++++|+++.. +. .|+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999987 557999998 7787776542 45899999987621 22 3999984
Q ss_pred cccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 267 WICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 267 ~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
--.+..+. .....+++.+.+.|+|||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32221111 3456789999999999999998764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.6e-06 Score=81.39 Aligned_cols=111 Identities=11% Similarity=-0.033 Sum_probs=81.6
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC--------------------------------------CeEE
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS--------------------------------------IKGI 229 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 229 (366)
.+..++.... |.+...|||.+||+|.++.+.+....+ .+++
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 4445565555 788899999999999999988765443 5699
Q ss_pred Eecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC-CCEEEecccccc-CC-hHHHHHHHHHHHHhCCC--CcEEE
Q 017777 230 NFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK-GDAIFIKWICHD-WS-DEHCVKFLKNCYEALPV--NGKVI 295 (366)
Q Consensus 230 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p--gG~ll 295 (366)
++|+ +.+++.++++ .+++++++|+.+ +.+. .|+|+++--++. +. .++...+.+.+.+.|++ ||++.
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 9998 8888777642 469999999987 4443 499999755432 22 34566778888888876 88888
Q ss_pred EEcc
Q 017777 296 VAES 299 (366)
Q Consensus 296 i~e~ 299 (366)
|+..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-07 Score=88.37 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=73.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C-CceEEEccCCCCC------CC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P-GVEHVGGDMFVSV------PK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~------~~-~D~i~~ 265 (366)
+..+|||+|||+|.++..++.. +..+++++|+ +.+++.++++ . +++++++|+++.. +. .|+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999986 3448999998 7777766542 2 7899999987621 22 399998
Q ss_pred ccccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.-..+..+. .....++.++.+.|+|||.|++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 533222111 3456889999999999999988764
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=79.61 Aligned_cols=143 Identities=10% Similarity=0.098 Sum_probs=102.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------------------------CCCceEEEccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------------------------FPGVEHVGGDM 253 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D~ 253 (366)
+...||.+|||......++...+++++++-+|.|++++.-++ .++.+++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 468999999999999999999888999999999888754321 15788999999
Q ss_pred CC-CC--------C--CC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh
Q 017777 254 FV-SV--------P--KG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM 321 (366)
Q Consensus 254 ~~-~~--------~--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 321 (366)
.+ +. + .. .++++-.+|++++.++...+|+.+.+.+ |+|.+++.|.+.+..+....-... ..++..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m--~~~l~~ 253 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIM--QSNLKE 253 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHH--HHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHH--HHHhhc
Confidence 86 21 1 12 7888889999999999999999999988 788888899887632211110100 001111
Q ss_pred -Hhh-CCC-CccCCHHHHHHHHHHcCCc
Q 017777 322 -LAH-NPG-GKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 322 -~~~-~~~-~~~~t~~e~~~ll~~aGf~ 346 (366)
... ..+ ....+.++..+.|.++||.
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 100 011 2345889999999999997
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=9.5e-07 Score=79.87 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=61.3
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC--C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--G 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--~ 260 (366)
...+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++++|+.+ +++. .
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 456666665 667789999999999999999997 457888887 777766654 3789999999998 6665 4
Q ss_pred CEEEeccccc
Q 017777 261 DAIFIKWICH 270 (366)
Q Consensus 261 D~i~~~~~lh 270 (366)
|+|+.+..+|
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9988664443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.8e-07 Score=85.26 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=71.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~~lh~ 271 (366)
.+..+|||+|||+|.++.. ++ ...+++++|+ +.+++.++++ ++++++.+|+++.....|+|++...-+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~- 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF- 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT-
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh-
Confidence 4568999999999999998 66 5678999998 7787776542 479999999987333349999852211
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
...+++.+.+.|+|||.+++.+..
T Consensus 270 -----~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 -----AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp -----GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHHcCCCCEEEEEEee
Confidence 237899999999999999997753
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=82.54 Aligned_cols=111 Identities=15% Similarity=0.014 Sum_probs=80.7
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC--------------------------------------CeEE
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS--------------------------------------IKGI 229 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 229 (366)
.+..++.... +.+..+|||.+||+|.++..++....+ .+++
T Consensus 183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 3445565555 778899999999999999998776332 5799
Q ss_pred Eecc-hhHHhhCCCC-------CCceEEEccCCC-CCCC-CCEEEecccccc-CC-hHHHHHHHHHHHHhCCC--CcEEE
Q 017777 230 NFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPK-GDAIFIKWICHD-WS-DEHCVKFLKNCYEALPV--NGKVI 295 (366)
Q Consensus 230 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p--gG~ll 295 (366)
++|+ +.+++.++++ +++++.++|+.+ +.+. .|+|+++--+.. +. .++...+.+.+.+.|++ |+.+.
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9998 8888877653 369999999987 4443 499999755532 22 23456777777777776 88888
Q ss_pred EEcc
Q 017777 296 VAES 299 (366)
Q Consensus 296 i~e~ 299 (366)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.2e-07 Score=84.57 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=70.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCC---CCC-CCEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVS---VPK-GDAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~~~-~D~i~~~~~lh 270 (366)
++.+|||+|||+|.++..++.. +.+++++|+ +.+++.++++ -..++.++|+++. .+. .|+|++.-..+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 4789999999999999999986 345999998 8888777653 1245778888762 222 49998853321
Q ss_pred cCCh-------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 271 DWSD-------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 271 ~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.-+. .....+++.+.+.|+|||+|++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 2335789999999999999997664
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=77.42 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=64.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---CCCceEEEccCCC-CCCC--C-
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---FPGVEHVGGDMFV-SVPK--G- 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~~~--~- 260 (366)
...+++.+. .... +|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. .
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 345666665 5666 99999999999999999975 57888887 777766543 2589999999987 5553 2
Q ss_pred CEEEeccccccCChHHHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKN 283 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~ 283 (366)
|. +..+.-++.+.+-..++|..
T Consensus 112 ~~-iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SL-LVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EE-EEEEECSSCCHHHHHHHHHH
T ss_pred cE-EEecCcccccHHHHHHHhcC
Confidence 55 44556666676655555544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=5.2e-07 Score=89.34 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=79.5
Q ss_pred hhhcccCchHHHHHHHHhhhcchhhHHHHHHhccC---CCCCCeEEEEeCCccHHHHHHHHh---C-CCCeEEEecchhH
Q 017777 164 FDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKG---FEGLNSVVDVGGGIGATLNMIISK---Y-PSIKGINFDLPHV 236 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~---~-p~~~~~~~D~~~~ 236 (366)
|+.+++|+-....|.+++.. .+.+..+. ..+...|||||||+|-+....+++ . -.++++.++-.++
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 56677777666677766543 23333221 223468999999999984443333 2 2346788886444
Q ss_pred HhhCCC-------CCCceEEEccCCC-CCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 017777 237 IQDAPA-------FPGVEHVGGDMFV-SVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 237 ~~~a~~-------~~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
...+++ .++|+++.+|+.+ ..|+. |+|++-..=+.+..|-...+|....+.|||||.++
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 444432 2689999999998 77776 99987432222222334467778889999999753
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-06 Score=74.77 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=68.0
Q ss_pred hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecch-hHHhhCCCC----CCceEEEccCCC-CCCC-
Q 017777 187 ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLP-HVIQDAPAF----PGVEHVGGDMFV-SVPK- 259 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~~v~~~~~D~~~-~~~~- 259 (366)
+.+.++.+... +....+|||+|||+|.++..+++..+-..++++|+. ......... .++.++..++.. .++.
T Consensus 61 ~KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~ 139 (277)
T 3evf_A 61 AKLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPV 139 (277)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCC
Confidence 44566666643 677789999999999999988876554455555542 111011111 144445554322 3432
Q ss_pred -CCEEEeccccc---cCChH-HHHHHHHHHHHhCCCC-cEEEE
Q 017777 260 -GDAIFIKWICH---DWSDE-HCVKFLKNCYEALPVN-GKVIV 296 (366)
Q Consensus 260 -~D~i~~~~~lh---~~~~~-~~~~~L~~~~~~L~pg-G~lli 296 (366)
.|+|++....+ ++-|. ....+|+.+.++|+|| |.+++
T Consensus 140 ~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 140 KCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 39999977665 11122 2235689999999999 99988
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-07 Score=86.52 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=72.1
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------C--CceEEEccCCCCC------C-CCCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------P--GVEHVGGDMFVSV------P-KGDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------~-~~D~i 263 (366)
.+..+|||+|||+|.++..++... ..+++++|+ +.+++.++++ . +++++++|+++.. + ..|+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 356799999999999999998853 237999998 8887776542 2 7999999987621 1 23999
Q ss_pred Eecccc-----ccCCh--HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 264 FIKWIC-----HDWSD--EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 264 ~~~~~l-----h~~~~--~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
++.... +...+ .....+++.+.+.|+|||.|++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 984322 12221 2345688999999999999988653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.5e-07 Score=84.78 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------C-CceEEEccCCCCC------C-CCCEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------P-GVEHVGGDMFVSV------P-KGDAIF 264 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~D~~~~~------~-~~D~i~ 264 (366)
+..+|||+|||+|.++..++... ..+++++|+ +.+++.++++ . +++++.+|+++.. + ..|+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 46799999999999999999864 348999998 7777766542 2 7899999987621 2 239999
Q ss_pred eccccccCC-------hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IKWICHDWS-------DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~lh~~~-------~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+.-.....+ ......++.++.+.|+|||.+++...
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 853221110 13456889999999999999988653
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.2e-06 Score=75.76 Aligned_cols=90 Identities=10% Similarity=0.084 Sum_probs=62.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC-CCCC---
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV-SVPK--- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~--- 259 (366)
...+++.+. .....+|||||||+|.++. +. +.+..+++++|+ +.+++.+++. ++++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 455666665 6667899999999999999 64 444434899998 8888877653 479999999987 5431
Q ss_pred ---CCEEEeccccccCChHHHHHHH
Q 017777 260 ---GDAIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 260 ---~D~i~~~~~lh~~~~~~~~~~L 281 (366)
.+.++..+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2455556666665544333444
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.17 E-value=7e-07 Score=80.21 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=60.7
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC--CeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCC---
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS--IKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPK--- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~--- 259 (366)
...+++.+. .....+|||||||+|.++..|++..+. .+++++|+ +.+++.+++. .+++++++|+.+ ++++
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 345666665 667789999999999999999998654 45888887 7787777653 689999999987 5442
Q ss_pred ----CCEEEeccccccCC
Q 017777 260 ----GDAIFIKWICHDWS 273 (366)
Q Consensus 260 ----~D~i~~~~~lh~~~ 273 (366)
....+..|.-++.+
T Consensus 110 ~~~~~~~~vv~NlPY~is 127 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPYNIS 127 (279)
T ss_dssp SSSSCCEEEEEECCHHHH
T ss_pred cccCCceEEEEccCcccc
Confidence 12445555555433
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-06 Score=88.95 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=72.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC--CC-CC-CCEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV--SV-PK-GDAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~--~~-~~-~D~i~~~~ 267 (366)
++.+|||+|||+|.++..++.... .+++++|+ +.+++.++++ .+++++++|+++ +. .. .|+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 467999999999999999888433 36999998 7888776542 379999999886 22 22 39999853
Q ss_pred ccc--------cCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 268 ICH--------DWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 268 ~lh--------~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
-.+ .+. ......+++.+.++|+|||.|++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 211 111 13456889999999999999997553
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4e-06 Score=80.28 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=69.4
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC----
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP---- 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---- 258 (366)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ .+++++.+|+.+..+
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34455444 556789999999999999999986 568999998 7888776542 479999999987322
Q ss_pred ---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 ---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 ---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
..|+|++.--... ...+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEEE
Confidence 2399997433221 1244555544 6888877764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=6.2e-06 Score=78.54 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=66.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCC-CCCEEEecccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVP-KGDAIFIKWICHD 271 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~D~i~~~~~lh~ 271 (366)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ . ++++.+|+.+..+ ..|+|++......
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 35679999999999999999885 458999998 8888777643 3 8999999987433 3499998543222
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.. ..+++.+. .|+|+|.+++..
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEES
T ss_pred hH----HHHHHHHH-hcCCCcEEEEEC
Confidence 21 13455554 489999988853
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-06 Score=84.92 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=76.6
Q ss_pred hhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------------CCCeEEE
Q 017777 164 FDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------------PSIKGIN 230 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~ 230 (366)
|+.+.+|+-....|.+++.. .+.+..++-.+...|||||||+|.++...+.+. ...+++.
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA 451 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence 55566666666666665543 222222211235689999999999975432221 2347888
Q ss_pred ecc-hhHHhhCCC------CCCceEEEccCCC-CC------CCC-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEE
Q 017777 231 FDL-PHVIQDAPA------FPGVEHVGGDMFV-SV------PKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 231 ~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~------~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~ll 295 (366)
++. +.++...+. .++|+++.+|+.+ .. ++. |+|++-..=+....+-....|..+.+.|||||.++
T Consensus 452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 886 433322111 2679999999988 44 443 99988654333233434567888889999999754
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.4e-06 Score=76.64 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCCCC--C-C-CCEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFVSV--P-K-GDAI 263 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~--~-~-~D~i 263 (366)
+++.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|.++-. . + .|+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999998767678888888 888876654 278999999988722 2 2 3999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+.-..=-.-+.. -...+++.++++|+|||.++..-
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 864221000000 01378999999999999999864
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-06 Score=75.61 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=59.6
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC---
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--- 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--- 259 (366)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 445666665 6677899999999999999999875 57888887 777776643 3689999999987 5532
Q ss_pred -CCEEEeccccccCCh
Q 017777 260 -GDAIFIKWICHDWSD 274 (366)
Q Consensus 260 -~D~i~~~~~lh~~~~ 274 (366)
....+..+.-++.+.
T Consensus 95 ~~~~~vv~NlPY~is~ 110 (255)
T 3tqs_A 95 DKPLRVVGNLPYNIST 110 (255)
T ss_dssp SSCEEEEEECCHHHHH
T ss_pred CCCeEEEecCCcccCH
Confidence 223344455554443
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.3e-06 Score=74.05 Aligned_cols=131 Identities=18% Similarity=0.099 Sum_probs=82.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHh-------CCC-----CeEEEecc-h---hHHhh-----------CC------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISK-------YPS-----IKGINFDL-P---HVIQD-----------AP------------ 241 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~-----------a~------------ 241 (366)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+.. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 564 57888875 4 22221 11
Q ss_pred --------CCCCceEEEccCCC--C-CCC-----CCEEEecc-ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC
Q 017777 242 --------AFPGVEHVGGDMFV--S-VPK-----GDAIFIKW-ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT 304 (366)
Q Consensus 242 --------~~~~v~~~~~D~~~--~-~~~-----~D~i~~~~-~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 304 (366)
...+++++.+|..+ + .+. .|+|++-. .-...|+--...+|+.+++.|+|||+|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-----
Confidence 01346788888765 2 222 39998732 11111111124789999999999999885221
Q ss_pred CCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 305 PDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
...+++.|.++||++.++...+...-++.++|
T Consensus 215 ----------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 215 ----------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVM 246 (257)
T ss_dssp ----------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEE
T ss_pred ----------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEe
Confidence 12356778889999776655544455666655
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.95 E-value=1e-05 Score=71.36 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=71.6
Q ss_pred chhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEE-c-cCCCCC
Q 017777 185 STITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVG-G-DMFVSV 257 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~-~-D~~~~~ 257 (366)
+.+-+.++.+.+. +....+|||+|||+|.++..+++..+-..++++|+ ......+.. ..++.... . |+.. +
T Consensus 75 AAfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l 152 (282)
T 3gcz_A 75 GSAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-M 152 (282)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-S
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-c
Confidence 3345667788774 77788999999999999998887766556778886 222111111 11233222 2 4332 2
Q ss_pred C--CCCEEEeccccc----cCChHHHHHHHHHHHHhCCCC--cEEEEEc
Q 017777 258 P--KGDAIFIKWICH----DWSDEHCVKFLKNCYEALPVN--GKVIVAE 298 (366)
Q Consensus 258 ~--~~D~i~~~~~lh----~~~~~~~~~~L~~~~~~L~pg--G~lli~e 298 (366)
+ ..|+|++-...+ ..+......+|+-+.++|+|| |.+++--
T Consensus 153 ~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 153 EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 2 239999977766 111112235788889999999 9988843
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0002 Score=65.61 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=101.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecchhHHhhCC-----------------------------CCCCceEEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISK-YPSIKGINFDLPHVIQDAP-----------------------------AFPGVEHVG 250 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~v~~~~ 250 (366)
+...|+-+|||.=....++... .++++++-+|.|++++.-+ ..++.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999999999875 3678899999988875311 125788999
Q ss_pred ccCCC--C---------CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc
Q 017777 251 GDMFV--S---------VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV 317 (366)
Q Consensus 251 ~D~~~--~---------~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 317 (366)
.|+.+ . +... -++++-.+|.+++.++...+|+.+.+.. |+|.+++.|.+.++++. ...|
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~f-------g~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRF-------GQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHH-------HHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHH-------HHHH
Confidence 99876 1 2222 5677789999999999999999999987 56677778988654311 1111
Q ss_pred chhhHhhC---CC-CccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 318 DCIMLAHN---PG-GKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 318 ~~~~~~~~---~~-~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
--++.... .+ ....+.++..++|.++||+.+++...
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 00111000 01 12347889999999999998776654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=73.05 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=60.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-C--C--
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-S--V-- 257 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~-- 257 (366)
+..+++.+. ..+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++. .+++++++|+.+ + .
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 455666665 56678999999999999999999998889999998 8888766542 589999999765 2 1
Q ss_pred ---CCCCEEEecc
Q 017777 258 ---PKGDAIFIKW 267 (366)
Q Consensus 258 ---~~~D~i~~~~ 267 (366)
...|.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 1238888643
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.2e-06 Score=77.77 Aligned_cols=87 Identities=7% Similarity=0.038 Sum_probs=61.8
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC---CC-------------
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS---VP------------- 258 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~------------- 258 (366)
..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ ++++++.+|..+. .+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999888743 47999997 7787776542 5799999998651 11
Q ss_pred ---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 ---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 ---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|+|++.---. .+..++.+.|+|+|+++.+.
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEE
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEE
Confidence 238888632211 23445566677889888865
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.9e-05 Score=77.67 Aligned_cols=111 Identities=13% Similarity=-0.048 Sum_probs=75.7
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC------------------------------------------CC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY------------------------------------------PS 225 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~ 225 (366)
.+..++.... +.+...|||.+||+|.++..++... +.
T Consensus 178 LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 178 LAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 3445565555 7778899999999999998877642 33
Q ss_pred CeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC----CCCEEEecccccc-C-ChHHHHHHHHHHHHh---
Q 017777 226 IKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP----KGDAIFIKWICHD-W-SDEHCVKFLKNCYEA--- 287 (366)
Q Consensus 226 ~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~----~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~--- 287 (366)
.+++++|+ +.+++.++.+ ..+++.++|+.+ ..| ..|+|+++--... + ..++...+.+.+.+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 67999998 8888877653 358999999976 223 2399999744421 2 223444455544444
Q ss_pred CCCCcEEEEEcc
Q 017777 288 LPVNGKVIVAES 299 (366)
Q Consensus 288 L~pgG~lli~e~ 299 (366)
+.|||++.|+..
T Consensus 337 ~~~g~~~~ilt~ 348 (703)
T 3v97_A 337 QFGGWNLSLFSA 348 (703)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCeEEEEeC
Confidence 458999988754
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.5e-05 Score=73.20 Aligned_cols=91 Identities=13% Similarity=-0.037 Sum_probs=68.3
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------------------CCceEEEccCCCC---
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------------------PGVEHVGGDMFVS--- 256 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~~--- 256 (366)
..+|||+|||+|..+..++.+.+..+++++|+ +.+++.++++ .+++++.+|..+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 57999999999999999999988888999998 7776655431 2378889997651
Q ss_pred CCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 257 VPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 257 ~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.+. .|+|++.- .. . ...+|+.+.+.|+|||.+++..
T Consensus 128 ~~~~fD~I~lDP-~~--~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP-FG--S---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC-SS--C---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC-CC--C---HHHHHHHHHHhcCCCCEEEEEe
Confidence 222 39988532 21 1 1478999999999999877754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.73 E-value=5.9e-05 Score=68.64 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=66.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCC-----CCCEEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVP-----KGDAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~-----~~D~i~ 264 (366)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.++++ .+++++.+|+.+ +.. ..|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 4578999997 7666655432 579999999876 221 239988
Q ss_pred ec------cccccCChH---------H-------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IK------WICHDWSDE---------H-------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~------~~lh~~~~~---------~-------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+. .++...++. + ..++|+.+.+.++ ||+|+...-
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 62 223221111 1 1357888877776 888777554
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.2e-05 Score=77.12 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=75.2
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC------------------CCeEEEecc-hhHHhhCCC------CC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP------------------SIKGINFDL-PHVIQDAPA------FP 244 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~ 244 (366)
..+++.+. .....+|+|.+||+|.++..+.+... ...++++|+ +.+++.++. ..
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33444444 44567999999999999988776532 246899997 777665542 13
Q ss_pred C-----ceEEEccCCC-C-CC--CCCEEEeccccccCC------------hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 245 G-----VEHVGGDMFV-S-VP--KGDAIFIKWICHDWS------------DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 245 ~-----v~~~~~D~~~-~-~~--~~D~i~~~~~lh~~~------------~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. +.+.++|.+. + .+ ..|+|+++--+.... ......++..+.+.|+|||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 3 7899999887 3 22 349999975554321 11124789999999999999988743
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.70 E-value=3.8e-05 Score=68.08 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=65.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-h-------hHHhhCCCC-------CCceEEEccCCC--C-CC--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-P-------HVIQDAPAF-------PGVEHVGGDMFV--S-VP-- 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~~v~~~~~D~~~--~-~~-- 258 (366)
..+..+|||+|||+|..+..++.. +.+++++|+ + .+++.++++ .+++++.+|..+ + ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 344579999999999999999985 568999998 7 777766543 469999999875 2 32
Q ss_pred --CCCEEEeccccccCCh------------------HHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 259 --KGDAIFIKWICHDWSD------------------EHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 259 --~~D~i~~~~~lh~~~~------------------~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..|+|++.-.+++-.. .+...+++.+.++.+ .+++|..+.
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~ 218 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPR 218 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEET
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCC
Confidence 3499998765543211 123455666666653 356665543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00016 Score=66.66 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=66.7
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCC-CCCC--CEEEeccccccCChH
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS-VPKG--DAIFIKWICHDWSDE 275 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~~~~--D~i~~~~~lh~~~~~ 275 (366)
+..+.++||+||++|.++..++++ +.+++++|..++-......++|+++.+|.+.. .+.. |+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 456789999999999999999986 57899999744434444568999999999883 3333 9999877764 23
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 276 HCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 276 ~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
....++.+.......++.++.+..
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 334445554444444455555443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00025 Score=62.93 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=69.1
Q ss_pred chhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecch-hHHhhCCC----CCCce-EEEc-cCCCCC
Q 017777 185 STITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLP-HVIQDAPA----FPGVE-HVGG-DMFVSV 257 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~-~~~~-D~~~~~ 257 (366)
+.+-+.++.+. .-+.+..+|||+||++|.++..+++..+-..++++|+. ........ ..++. +..+ |++.-.
T Consensus 66 aa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~ 144 (300)
T 3eld_A 66 GAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMP 144 (300)
T ss_dssp THHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecC
Confidence 33445566666 43567889999999999999999987655567778762 11111110 01222 3322 443311
Q ss_pred C-CCCEEEeccccccCCh----H-HHHHHHHHHHHhCCCC-cEEEEEc
Q 017777 258 P-KGDAIFIKWICHDWSD----E-HCVKFLKNCYEALPVN-GKVIVAE 298 (366)
Q Consensus 258 ~-~~D~i~~~~~lh~~~~----~-~~~~~L~~~~~~L~pg-G~lli~e 298 (366)
+ ..|+|++....+ -+. . ....+|+-+.++|+|| |.+++--
T Consensus 145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 145 TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 2 239999876655 221 1 2246688889999999 9998853
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=3.2e-05 Score=72.56 Aligned_cols=92 Identities=13% Similarity=0.009 Sum_probs=69.1
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC-------CC-ceEEEccCCC--C--CCC-CCEEEe
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF-------PG-VEHVGGDMFV--S--VPK-GDAIFI 265 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~--~--~~~-~D~i~~ 265 (366)
+..+|||++||+|.++..++.+.++ .+++++|+ +..++.++++ ++ ++++.+|.++ . .+. .|+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4579999999999999999998765 47899998 7777766542 33 8999999865 2 222 399987
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.- +..+ ..+++.+.+.|+|||.|++..
T Consensus 132 DP--~g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SSCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CcCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 64 1111 357899999999999777755
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00029 Score=63.96 Aligned_cols=144 Identities=9% Similarity=0.015 Sum_probs=93.2
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------CCCceEEEccCCCCC---------C-CC-
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------FPGVEHVGGDMFVSV---------P-KG- 260 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~---------~-~~- 260 (366)
+...||++|||-=....++.. .++++++-+|.|.+++..++ ..+..++..|+.+.. . ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 457899999998888777652 12478999999888765432 356888999987521 1 11
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhc-chh-hHh-----hCCCCcc-CC
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV-DCI-MLA-----HNPGGKE-RT 332 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~t 332 (366)
-++++-.+||++++++...+|+.+.+.+.||+.|++- .+.++.... ........ ... ... ....... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d-~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE-TSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE-CCCTTCSHH--HHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEE-ecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 4677789999999999999999999999998887764 443332100 00000000 000 000 0001112 25
Q ss_pred -HHHHHHHHHHcCCcee
Q 017777 333 -EQEFRALAKAAGFQGF 348 (366)
Q Consensus 333 -~~e~~~ll~~aGf~~~ 348 (366)
.++..++|.+.||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 7889999999999987
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00035 Score=70.47 Aligned_cols=100 Identities=11% Similarity=0.021 Sum_probs=67.8
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC---CCeEEEecc-hhHHhhC--C----C----C--CCceEEEccCCCCC--C--C
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP---SIKGINFDL-PHVIQDA--P----A----F--PGVEHVGGDMFVSV--P--K 259 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~----~--~~v~~~~~D~~~~~--~--~ 259 (366)
....+|||.|||+|.++..+++..+ ..+++++|+ +.+++.+ + . + ....+...|++.+. + .
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 357899997 6666555 1 1 1 22355666666521 2 2
Q ss_pred CCEEEecccccc-CCh-HH-------------------------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 260 GDAIFIKWICHD-WSD-EH-------------------------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 260 ~D~i~~~~~lh~-~~~-~~-------------------------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.|+|+++--+-. +.. .. ...++..+.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 399999755411 111 11 23478889999999999988754
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00058 Score=59.31 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=67.3
Q ss_pred chhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh--CCCCeE--EEecchhHHhhCCCC-CCc---eEEEc-cCCC
Q 017777 185 STITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISK--YPSIKG--INFDLPHVIQDAPAF-PGV---EHVGG-DMFV 255 (366)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~--~~~D~~~~~~~a~~~-~~v---~~~~~-D~~~ 255 (366)
+.+-+.++.+++ -+.+..+|||+||+.|.++...++. ...+.+ +++|+ + +.-.... .++ .++.+ |+++
T Consensus 58 AayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~ 134 (269)
T 2px2_A 58 GTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFY 134 (269)
T ss_dssp HHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGG
T ss_pred HHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccC
Confidence 334466777776 3778899999999999999988775 211122 33442 1 1111111 455 44446 9987
Q ss_pred CCC-CCCEEEeccccccCC----hHH-HHHHHHHHHHhCCCCc-EEEEEcc
Q 017777 256 SVP-KGDAIFIKWICHDWS----DEH-CVKFLKNCYEALPVNG-KVIVAES 299 (366)
Q Consensus 256 ~~~-~~D~i~~~~~lh~~~----~~~-~~~~L~~~~~~L~pgG-~lli~e~ 299 (366)
..+ ..|+|++-..-. -+ |.. ...+|.-+.++|+||| .+++--+
T Consensus 135 ~~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 135 KPSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp SCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 333 349998854332 11 111 2236777889999999 8887433
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00094 Score=57.13 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=72.0
Q ss_pred hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh---CCCC--CCceEEEc-cCCC-CCC
Q 017777 187 ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD---APAF--PGVEHVGG-DMFV-SVP 258 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~--~~v~~~~~-D~~~-~~~ 258 (366)
+.+.++.+.+. +....+|||+||++|.++...+....-.+++++|+ +.-.+. .+.+ ..|+|+.+ |++. +..
T Consensus 65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~ 143 (267)
T 3p8z_A 65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE 143 (267)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence 44667788775 77788999999999999997777765557899997 221111 1112 56999999 9765 222
Q ss_pred CCCEEEeccccccCC-hHHH---HHHHHHHHHhCCCCcEEEE
Q 017777 259 KGDAIFIKWICHDWS-DEHC---VKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~-~~~~---~~~L~~~~~~L~pgG~lli 296 (366)
..|+|+|-..=..-+ .-+. ..+|.-+.++|++ |.++|
T Consensus 144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 359998854332211 1121 3467777899998 66666
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.34 E-value=7.7e-05 Score=73.19 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=71.6
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC---------------CCeEEEecc-hhHHhhCCCC-------C
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP---------------SIKGINFDL-PHVIQDAPAF-------P 244 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~ 244 (366)
+...+++.+. . ...+|+|.+||+|.++..+.+... ...++++|+ +.++..++.. .
T Consensus 233 Vv~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 233 IVTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 3444444443 2 234999999999999888765432 467899998 7776665431 2
Q ss_pred CceEEEccCCC-C-CCC--CCEEEecccccc--CChH-------------------------HHHHHHHHHHHhCCCCcE
Q 017777 245 GVEHVGGDMFV-S-VPK--GDAIFIKWICHD--WSDE-------------------------HCVKFLKNCYEALPVNGK 293 (366)
Q Consensus 245 ~v~~~~~D~~~-~-~~~--~D~i~~~~~lh~--~~~~-------------------------~~~~~L~~~~~~L~pgG~ 293 (366)
++.+.++|.+. + .+. .|+|+++--+.. |..+ ....++..+.+.|+|||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 34447888776 3 232 399998644431 2211 012589999999999999
Q ss_pred EEEEc
Q 017777 294 VIVAE 298 (366)
Q Consensus 294 lli~e 298 (366)
+.++-
T Consensus 391 ~aiVl 395 (544)
T 3khk_A 391 MALLL 395 (544)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88864
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.29 E-value=7.7e-05 Score=65.92 Aligned_cols=77 Identities=13% Similarity=0.237 Sum_probs=54.0
Q ss_pred HHHhccCCCCC--CeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH-------HhhCCC-------C-CCceEEEccC
Q 017777 192 ILENYKGFEGL--NSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV-------IQDAPA-------F-PGVEHVGGDM 253 (366)
Q Consensus 192 ~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~~v~~~~~D~ 253 (366)
+.+.+. ..+. .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++. . .+++++++|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 444443 4555 79999999999999999987 457999997 543 333221 1 4689999998
Q ss_pred CC---CCCC-CCEEEecccccc
Q 017777 254 FV---SVPK-GDAIFIKWICHD 271 (366)
Q Consensus 254 ~~---~~~~-~D~i~~~~~lh~ 271 (366)
.+ ..+. .|+|++.-.+++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 65 2333 499999876654
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00022 Score=66.05 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=68.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------------CCceEEEccCCCCC-------C
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------------PGVEHVGGDMFVSV-------P 258 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~~~-------~ 258 (366)
++.+||-||+|.|..+.++++. |.-+++.+|+ |.+++.++++ +|++++.+|..+-. .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999874 5568888888 8888776531 46888888876411 1
Q ss_pred CCCEEEeccccc-------cCC-hHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 259 KGDAIFIKWICH-------DWS-DEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 259 ~~D~i~~~~~lh-------~~~-~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
..|+|+.-..=. ... ..-...+++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 249998742211 001 111357899999999999998875
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0018 Score=57.30 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=70.1
Q ss_pred hhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhH-Hh---hCCCC--CCceEEEc-cCCC-CCC
Q 017777 187 ITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHV-IQ---DAPAF--PGVEHVGG-DMFV-SVP 258 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~---~a~~~--~~v~~~~~-D~~~-~~~ 258 (366)
+.+.++.+.+. +....+|||+||++|.++...+....-.+++++|+-.. .+ ..+.. .-|.++.+ |++. +..
T Consensus 81 ~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~ 159 (321)
T 3lkz_A 81 AKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSE 159 (321)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCC
Confidence 45667777765 77778999999999999997776655557899997211 11 01111 33788887 8765 222
Q ss_pred CCCEEEeccccccCChH--H---HHHHHHHHHHhCCCC-cEEEE
Q 017777 259 KGDAIFIKWICHDWSDE--H---CVKFLKNCYEALPVN-GKVIV 296 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~--~---~~~~L~~~~~~L~pg-G~lli 296 (366)
..|+|+|--. .--+.+ + ...+|.-+.++|++| |.++|
T Consensus 160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 3488887544 221221 1 134777778999988 77776
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00048 Score=54.56 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCCeEEEEeCCcc-HHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCC----CCCEEEeccccccCCh
Q 017777 201 GLNSVVDVGGGIG-ATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVP----KGDAIFIKWICHDWSD 274 (366)
Q Consensus 201 ~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~----~~D~i~~~~~lh~~~~ 274 (366)
...+|||||||.| ..+..|++. .++.++++|+ |..++ +++.|+|+|.. ..|+|...+- +
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP-----P 99 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP-----P 99 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC-----C
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC-----C
Confidence 4579999999999 588877764 4678999997 55543 88899998655 3399966443 3
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.+....+.++.+.. |.-++|.....
T Consensus 100 ~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 100 AEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp TTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred HHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 44455555666643 56777765433
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00014 Score=83.14 Aligned_cols=142 Identities=15% Similarity=0.079 Sum_probs=63.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCC-----CeEEEecc-hhHHhhCCCC-C--CceEEEccCCCC---CCC-CCEEEecc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPS-----IKGINFDL-PHVIQDAPAF-P--GVEHVGGDMFVS---VPK-GDAIFIKW 267 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--~v~~~~~D~~~~---~~~-~D~i~~~~ 267 (366)
...+||+||+|+|..+..+++.... .+++..|+ +...+.+++. . .+.....|..++ .+. +|+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 3569999999999887777666532 24566676 4444445432 1 122222233222 122 39999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCce
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQG 347 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 347 (366)
+||.-++ ....|+++++.|||||++++.+......-.. ........ . .......+.++|.++|.++||..
T Consensus 1320 vl~~t~~--~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~-----~~~~~~~~--~-r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLGD--PAVAVGNMAATLKEGGFLLLHTLLAGHPLGE-----MVGFLTSP--E-QGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred ccccccc--HHHHHHHHHHhcCCCcEEEEEeccccccccc-----cccccccc--c-ccCCcccCHHHHHHHHHhCCCce
Confidence 9996443 3578999999999999999987542110000 00000000 0 00122346778999999999998
Q ss_pred eEEEE
Q 017777 348 FQVVS 352 (366)
Q Consensus 348 ~~~~~ 352 (366)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 76543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=55.34 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=58.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------CCCceEEEccCCCC--------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------FPGVEHVGGDMFVS-------------- 256 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~-------------- 256 (366)
+..+||||||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46899999985 55555665 45778988886 555554432 34789999985421
Q ss_pred ----------CC---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 257 ----------VP---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 257 ----------~~---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
.+ ..|+|++-.-. ....+..+.+.|+|||.|++-+..
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DNv~ 156 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDDYS 156 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETTGG
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeCCc
Confidence 11 23999985421 124455577899999999654433
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0015 Score=63.97 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=70.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhC---CCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCC-CCC---C--CCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKY---PSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFV-SVP---K--GDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~~---~--~D~ 262 (366)
...+|+|.+||+|.++..+.+.. +...++++|+ +.++..++.+ +++.+.++|.+. +.| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999988875 3568999998 6666655431 356889999886 322 2 399
Q ss_pred EEeccccc-cCChH--------------------HHHHHHHHHHHhCC-CCcEEEEEcc
Q 017777 263 IFIKWICH-DWSDE--------------------HCVKFLKNCYEALP-VNGKVIVAES 299 (366)
Q Consensus 263 i~~~~~lh-~~~~~--------------------~~~~~L~~~~~~L~-pgG~lli~e~ 299 (366)
|+++--+. .|... ....++..+.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 99863321 12100 01258999999999 9999988653
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=57.15 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=66.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhC-----CCCeEEEecc----hh-----------------------HHhhCCC-----
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKY-----PSIKGINFDL----PH-----------------------VIQDAPA----- 242 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~----~~-----------------------~~~~a~~----- 242 (366)
..+.+|||+|+..|..+..++... ++.+++++|. |+ ..+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999988877654 4778988883 11 0111111
Q ss_pred ---CCCceEEEccCCCC---CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 243 ---FPGVEHVGGDMFVS---VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 243 ---~~~v~~~~~D~~~~---~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.++|+++.||+.+. .+.. |+|++-.-.+ +.....|..+...|+|||.|++-+.
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 16899999998762 3222 7777654322 3345789999999999998887553
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.008 Score=60.82 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=101.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC--------CCeEEEecchhHHhhCCC------------------------------
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP--------SIKGINFDLPHVIQDAPA------------------------------ 242 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 242 (366)
+...|+-+|||.=....+|....+ +++++-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988755 778889998888653211
Q ss_pred CCCceEEEccCCCC-----------C-CCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCc
Q 017777 243 FPGVEHVGGDMFVS-----------V-PKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTS 308 (366)
Q Consensus 243 ~~~v~~~~~D~~~~-----------~-~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 308 (366)
.++.+++..|+.+. + ... -++++-.+|.+++.++...+|+.+.+ + |+|.+++.|.+.+......
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 03788999999761 1 222 46677899999999999999999985 4 7889999898776532222
Q ss_pred hhhhhhhhcchhhHhh-C-CCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 309 LASKVVIHVDCIMLAH-N-PGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~-~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
..... ..++..... . .-....+.++..+.|.+.||+.+....
T Consensus 265 f~~~m--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 265 FSKQM--LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp HHHHH--HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHH--HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 11111 111111000 0 001234799999999999998766554
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00096 Score=50.65 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=54.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhC--CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQL--PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.+..|++.|.+. |+.|+.+||+.+ ++ ++..+++.|+.|...|+|+.. | .+.|++|+.+..++.
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~------~--rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL------A--NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC------S--TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec------C--CceEEECchHHHHHH
Confidence 346688889875 599999999999 99 999999999999999999962 1 458999999987665
Q ss_pred C
Q 017777 119 N 119 (366)
Q Consensus 119 ~ 119 (366)
.
T Consensus 79 ~ 79 (111)
T 3b73_A 79 G 79 (111)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00046 Score=64.96 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=49.8
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCC--C-C--CCCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS--V-P--KGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~--~-~--~~D~i~~~ 266 (366)
...+|||+|||+|..+..+++. ..+++++|+ +.+++.++++ .+++++++|+.+. . + ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 3689999999999999988875 458999997 7777766532 4689999999862 2 1 34999984
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0019 Score=57.19 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=52.2
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV 255 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~ 255 (366)
.++.+++.+. ..+...+||.+||.|..+..++++ +.+++++|. |.+++.+++. +++.++.+|+.+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 3567777776 677789999999999999999997 679999998 7777655421 578888888765
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0016 Score=48.60 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=50.9
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
+.+|.--.++.|+..|.+ +|.|+.|||+.+++ ++..+.+.|+.|...|+|... .+|+ .-.|++++
T Consensus 17 ~~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~----~~g~-~~~y~l~~ 81 (102)
T 3pqk_A 17 LKTLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETR----RNIK-QIFYRLTE 81 (102)
T ss_dssp HHHHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEE----CSSS-CCEEEECS
T ss_pred HHHcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EeCC-EEEEEECc
Confidence 345555667778888876 58999999999999 999999999999999999864 3332 34566664
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=48.47 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=51.5
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+.++..-.++.|+..| . ++.++.|||+.+++ ++.-+.+.|+.|...|+|... .+.|.+++.+
T Consensus 25 ~~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---------~g~y~l~~~g 86 (96)
T 1y0u_A 25 NYAVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---------GERWVVTDAG 86 (96)
T ss_dssp HHHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECTTT
T ss_pred HHHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------CCEEEECCCc
Confidence 3455556677899999 5 48999999999999 999999999999999999963 2478877654
Q ss_pred h
Q 017777 114 K 114 (366)
Q Consensus 114 ~ 114 (366)
.
T Consensus 87 ~ 87 (96)
T 1y0u_A 87 K 87 (96)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=46.51 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=50.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcc-hHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHT-VLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
.+-.|++.|... ||.|+.+||+.+++ ... .+++.|..|+..|+|... ..| ...|.+|+.+.
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~----~~g--RP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ----GTT--PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE----CSS--SCEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEec----CCC--CCCeEeCHhHH
Confidence 345677888887 59999999999999 998 999999999999999853 223 34888888765
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=45.48 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=44.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
+..|++.|.+.+ .|++..|||+.+++ +...+.+.|..|...|+|... . .++|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~----~----~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP----S----PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE----E----TTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC----C----CceEeeC
Confidence 556888887642 48999999999999 999999999999999998752 1 4677654
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0012 Score=48.80 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=50.9
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.++.-..++.|+..|.+ ++.|+.|||+.+++ ++..+.+.|+.|...|+|... .+|+ ...|.+++
T Consensus 18 ~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~----~~g~-~~~y~l~~ 81 (98)
T 3jth_A 18 KAMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR----KEAQ-TVYYTLKS 81 (98)
T ss_dssp HHHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----CCTT-CCEEEECC
T ss_pred HHcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EeCC-EEEEEECH
Confidence 44555667788888877 49999999999999 999999999999999999864 3332 34566664
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0014 Score=50.40 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=53.1
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+.+|.--.++.|+..|.+ +|.++.|||+.+++ ++..+.+.|+.|...|+|... .+|+ ...|++++..
T Consensus 12 ~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~----~~gr-~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTH----KQGR-VRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE----ecCC-EEEEEECHHH
Confidence 455666677888888886 59999999999999 999999999999999999864 2232 3567777543
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0032 Score=44.81 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=48.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFL 116 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l 116 (366)
-.+..|++.|.+.+++.++|+.|||+++|+ +..-+++.|.-|...|+|... +++ .+.|.+.+....+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~-----g~~-~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE-----AGT-PPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----SSS-SCEEEEC------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec-----CCC-CCeeEEeCcHHhc
Confidence 345668888887633347999999999999 999999999999999999863 121 4778777655433
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.011 Score=53.01 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=75.6
Q ss_pred CCCeEEEEeCCccHHHHHH----HHhCCCCeE--EEecc-h--------hH----H----hhCCC--CCC--ceEEEccC
Q 017777 201 GLNSVVDVGGGIGATLNMI----ISKYPSIKG--INFDL-P--------HV----I----QDAPA--FPG--VEHVGGDM 253 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l----~~~~p~~~~--~~~D~-~--------~~----~----~~a~~--~~~--v~~~~~D~ 253 (366)
..-+|||+|=|+|...... .+..|+.++ +.++. | +. . +.... ..+ +.+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 3468999999999865433 344677654 44442 0 00 0 00000 023 34567787
Q ss_pred CC---CCCC--CCEEEeccc-cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 254 FV---SVPK--GDAIFIKWI-CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 254 ~~---~~~~--~D~i~~~~~-lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
.+ ..+. .|++++-.. -..-|+---..+++++++.++|||.+.-..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----------------------------
Confidence 65 2333 288877321 111111122478999999999999886421
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEec
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKS 365 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~ 365 (366)
....+++-|++|||++.++.-.+...-++.+.++
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~~ 260 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASLK 260 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEECC---CEEEEEESS
T ss_pred ----CcHHHHHHHHHCCCEEEecCCCCCCCceeEEecC
Confidence 1235678899999998777665555566666654
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=49.20 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+.++.-..++.|+..|... ++.|+.|||+.+++ ++..+.+.|+.|...|++... .+|+ ...|++++
T Consensus 35 ~~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~----~~gr-~~~y~l~~ 101 (122)
T 1u2w_A 35 ILKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR----KEGK-LALYSLGD 101 (122)
T ss_dssp HHHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEEEESC
T ss_pred HHHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EECC-EEEEEECH
Confidence 34455556678899999854 58999999999999 999999999999999999863 2331 23566664
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0028 Score=51.02 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 32 VLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 32 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
-.+.+|.--.++.|+..|.. +|.|+.|||+.+++ ++..+.+.|+.|...|+|+.. .+|+ .-.|++++
T Consensus 50 ~~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~----~~Gr-~~~y~lt~ 116 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPR----KDGR-FRYYRLDP 116 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECH
T ss_pred HHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE----ecCC-EEEEEECh
Confidence 45677788889999999986 59999999999999 999999999999999999864 2332 24688876
Q ss_pred hch
Q 017777 112 VCK 114 (366)
Q Consensus 112 ~~~ 114 (366)
...
T Consensus 117 ~~~ 119 (151)
T 3f6v_A 117 QGL 119 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0029 Score=46.61 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
++....++.|+..|... ++.|..|||+.+++ ++..+.+.|+.|...|++... .+|+ ...|.+++.
T Consensus 20 ~l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~----~~~r-~~~y~l~~~ 84 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQ----RDAQ-RILYSIKNE 84 (99)
T ss_dssp HHCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE----ECSS-CEEEEECCH
T ss_pred HhCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE----ecCC-EEEEEEChH
Confidence 34445667788888764 48999999999999 999999999999999999874 2221 245666644
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0041 Score=43.83 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=47.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+..|++.|.+.+.+.++|+.|||+++++ +...+++.|+-|...|+|... .++ .+.|.+++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~-----g~~-~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE-----AGT-PPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEE-----CSS-SCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec-----CCC-CCceEecC
Confidence 35678888888633347999999999999 999999999999999999863 111 46666653
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.017 Score=52.42 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=53.7
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV 255 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~ 255 (366)
.+.++++.+. ..++..+||..||.|..+..+++.. |+.+++++|. |.+++.+++. .|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567788776 6778899999999999999999985 7889999998 8888877532 567777776643
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0032 Score=47.29 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=41.7
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..-.++.|+..|.. ++.++.|||+.+++ ++..+.+.|+.|...|++...
T Consensus 24 ~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 24 GDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp CSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34455667777775 48999999999999 999999999999999999864
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.005 Score=45.36 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
.++....++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|++..... +.++. ...|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~-~~~~r-~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKV-IADRP-RTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEec-CCCcc-eEEEEECHHHH
Confidence 456666788888888754 48999999999999 99999999999999999986310 11221 34677877665
Q ss_pred h
Q 017777 115 F 115 (366)
Q Consensus 115 ~ 115 (366)
.
T Consensus 82 ~ 82 (100)
T 1ub9_A 82 E 82 (100)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0018 Score=48.89 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.-.++.|+..|.+ ++.|+.|||+.+++ ++..+.+.|+.|...|+|...
T Consensus 24 ~~~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 24 NGRRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TSTTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3345556667765 48999999999999 999999999999999999864
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0052 Score=46.59 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=49.1
Q ss_pred HHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 37 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+....++.|+..|.. +|.|+.|||+.+++ ++..+.+.|+.|...|+|... .+|. ...|.+++.+.
T Consensus 18 l~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~----~~gr-~~~y~l~~~~~ 82 (114)
T 2oqg_A 18 LSDETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESV----KVGR-EIRYRALGAEL 82 (114)
T ss_dssp TTCHHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECSHHH
T ss_pred hCChHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEE----ecCC-EEEEEechHHH
Confidence 333456678888854 58999999999999 999999999999999999863 1221 23477776543
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.01 Score=41.81 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=39.2
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|.+.|.+. +.+++.|||+.+++ ++.-++|-|+.|+..|+|.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 66778776 59999999999999 999999999999999999874
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0092 Score=42.89 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=39.3
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
|.+.|.+. |.+++.|||+.+++ ++.-++|.|+.|+..|+|.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 67778776 69999999999999 999999999999999999974
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0083 Score=42.48 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
.....|++.|.+. +.|+.|||+++|+ +...+++.|..|+..|+|... +|+ .-.|.++...
T Consensus 17 ~~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~-----~~~-PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSS-----DDI-PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEC-----SSS-SCEEESCC--
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCC-CCcceeccCc
Confidence 3455677888863 4999999999999 999999999999999999963 221 4567666543
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0057 Score=54.47 Aligned_cols=59 Identities=12% Similarity=0.243 Sum_probs=47.1
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
+.|++.|...+ .++|+.|||+.+|+ +..-+.|+|+.|+..|||.++ . ++.|++++....
T Consensus 33 l~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~----~----~~~Y~LG~~~~~ 91 (275)
T 3mq0_A 33 VRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS----A----DGTLRIGPHSLR 91 (275)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC----T----TSEEEECTHHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----C----CCcEEehHHHHH
Confidence 45788888753 47999999999999 999999999999999999974 1 467999876543
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.012 Score=44.30 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=53.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCCC
Q 017777 22 LLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPD 100 (366)
Q Consensus 22 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 100 (366)
..+++++.+.|... |+..|.. ++.+..||++.+ ++ ++..+.+.|+.|...|+|++.. .+.|
T Consensus 5 ~~~l~~l~~~~~~~---------IL~~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~-~~~d 66 (107)
T 2hzt_A 5 EATLEVIGGKWKXV---------ILXHLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIV-YNQV 66 (107)
T ss_dssp HHHHHHHCSTTHHH---------HHHHHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEE-ECSS
T ss_pred HHHHHHHcCccHHH---------HHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEee-cCCC
Confidence 44455555554444 3444544 489999999999 99 9999999999999999999752 1122
Q ss_pred Cccccccccchhchhhh
Q 017777 101 GKVERLYGLAPVCKFLT 117 (366)
Q Consensus 101 g~~~~~y~~t~~~~~l~ 117 (366)
+. .-.|.+|+.+..+.
T Consensus 67 ~r-~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 67 PP-KVEYELSEYGRSLE 82 (107)
T ss_dssp SC-EEEEEECTTGGGGH
T ss_pred CC-eEEEEECccHHHHH
Confidence 21 24688887766544
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0072 Score=42.45 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+|.|+.|||+.+|+ ++..+++-|..|+..|+|.++
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 59999999999999 889999999999999999974
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.02 Score=42.92 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=60.1
Q ss_pred CccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhccccccc
Q 017777 15 GSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP-TKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+........+++++.+.|...+|. .|.. ++.+..||++.++ + ++..+.+.|+.|+..|+|++
T Consensus 9 ~~~~c~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r 71 (107)
T 2fsw_A 9 SDEECPVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKK 71 (107)
T ss_dssp CSTTCHHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CcCCCCHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEE
Confidence 333456677777777777665443 4443 4899999999995 9 99999999999999999987
Q ss_pred ccccCCCCccccccccchhchhhh
Q 017777 94 SLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 94 ~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.. .+.|+. .-.|.+|+.+..+.
T Consensus 72 ~~-~~~d~r-~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 72 KQ-YPEVPP-RVEYSLTPLGEKVL 93 (107)
T ss_dssp EE-ECSSSC-EEEEEECHHHHTTH
T ss_pred ee-cCCCCC-eeEEEECccHHHHH
Confidence 52 111211 24699998876554
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0098 Score=45.07 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=53.9
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCC--HHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCC
Q 017777 23 LAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMS--PKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLP 99 (366)
Q Consensus 23 ~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t--~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 99 (366)
.+++.+.+.|... |+..|.. |+.+ +.||++.+ ++ ++..+.+.|+.|...|+|++...
T Consensus 19 ~~l~~l~~~wrl~---------IL~~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~--- 78 (111)
T 3df8_A 19 SVLHLLGKKYTML---------IISVLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG--- 78 (111)
T ss_dssp STHHHHHSTTHHH---------HHHHHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES---
T ss_pred HHHHHHcCccHHH---------HHHHHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec---
Confidence 3455555555444 4455554 4878 99999999 99 99999999999999999997421
Q ss_pred CCccccccccchhchhhh
Q 017777 100 DGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 100 ~g~~~~~y~~t~~~~~l~ 117 (366)
. ...|.+|+.+..+.
T Consensus 79 r---~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 Q---ITTYALTEKGMNVR 93 (111)
T ss_dssp S---SEEEEECHHHHHHH
T ss_pred C---cEEEEECccHHHHH
Confidence 1 46799998887655
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0061 Score=47.11 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=42.9
Q ss_pred HHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 37 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+.-..++.|+..|.+ ++.++.+||+.+++ ++..+.+.|+.|...|++...
T Consensus 43 L~~~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 43 LADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 334456778888876 48999999999999 999999999999999999864
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.021 Score=44.34 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=37.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
++.|.++||+.+++ ++..++++|+.|...|+|+.. .|. .+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~-----~g~-~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSI-----RGA-YGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEec-----CCC-CCceEeCC
Confidence 58999999999999 999999999999999999853 121 36677764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.017 Score=53.29 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=68.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC------------CCCCceEEEccCCC--C-CCC-CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP------------AFPGVEHVGGDMFV--S-VPK-GD 261 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~--~-~~~-~D 261 (366)
...+.+|||+.+|.|.=+..+++..++..++..|+ +.-++..+ ...++.+...|... + .+. .|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56678999999999999999998877667888886 33332221 11467788888655 1 233 38
Q ss_pred EEEe----cc----cc-------ccCChHH-------HHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 262 AIFI----KW----IC-------HDWSDEH-------CVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 262 ~i~~----~~----~l-------h~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.|++ +. ++ +.+..++ -.++|+++.+.|||||+|+-..-..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 8875 21 11 1222222 2478999999999999988766444
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.027 Score=51.80 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=58.7
Q ss_pred HHHHHHhccCCC------CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH---HhhCCCCCCceEEEccCCC-C-
Q 017777 189 MKKILENYKGFE------GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV---IQDAPAFPGVEHVGGDMFV-S- 256 (366)
Q Consensus 189 ~~~~~~~~~~~~------~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~~~~v~~~~~D~~~-~- 256 (366)
...+++... .. +...|||||.|.|.++..|+++....+++.+++ +.. ++.....++++++.+|+++ +
T Consensus 41 ~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~ 119 (353)
T 1i4w_A 41 YNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWST 119 (353)
T ss_dssp HHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHH
T ss_pred HHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhh
Confidence 445666554 33 247899999999999999998743335666654 222 2221135789999999975 3
Q ss_pred C----CC--------------C-CEEEeccccccCChHHHHHHHHH
Q 017777 257 V----PK--------------G-DAIFIKWICHDWSDEHCVKFLKN 283 (366)
Q Consensus 257 ~----~~--------------~-D~i~~~~~lh~~~~~~~~~~L~~ 283 (366)
+ .+ . .+.+..|.-++.+.+-..++|..
T Consensus 120 ~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 120 YSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp HHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred HHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHh
Confidence 1 11 1 24566666677665544455554
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.05 Score=42.64 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=48.1
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..++
T Consensus 36 t~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 36 TPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGLAIH 105 (142)
T ss_dssp CHHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC------------CCEECHHHHHHH
T ss_pred CHHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCC-eeeeEECHHHHHHH
Confidence 35677788888886 49999999999999 9999999999999999999741 111111 12366777666555
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=42.78 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 58 MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 58 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.+..+||..+++ +++.++..++.|...|++++. .+.|.+|+.+..++.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~---------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE---------CCeeEEChhHHHHHH
Confidence 899999999999 999999999999999999974 466999999997764
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=41.32 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=39.1
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
..|++.|.+. ++.|..|||+.+++ ++.-+++.|+.|...|+|..
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3467777765 58999999999999 99999999999999999985
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.014 Score=50.84 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=49.3
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|||+++. + ++.|++++....+.
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~----~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---P----AGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---G----GCEEEECSHHHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----CCeEEECHHHHHHH
Confidence 45677777642 47999999999999 9999999999999999999741 1 37899987654443
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.023 Score=44.36 Aligned_cols=80 Identities=9% Similarity=0.066 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 20 ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 20 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
++..+++++.+-|...+|.. |.. |+.+..||++.+ ++ ++..|.+.|+.|+..|+|++.. .+
T Consensus 15 pi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~-~~ 76 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREV-YH 76 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEE-EC
T ss_pred cHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEe-cC
Confidence 46677777777777665543 333 599999999999 99 9999999999999999999752 11
Q ss_pred CCCccccccccchhchhhhc
Q 017777 99 PDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~~ 118 (366)
.+.. .-.|.+|+.+..+..
T Consensus 77 ~d~r-~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 77 QVPP-KVEYSLTEFGRTLEP 95 (131)
T ss_dssp SSSC-EEEEEECTTGGGGHH
T ss_pred CCCC-eEEEEECHhHHHHHH
Confidence 1111 246899988886663
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.078 Score=42.62 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=52.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
..++.|+..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..++.
T Consensus 46 ~~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 46 LPQFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAP-DPTHGR-RILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEE-CCSSSC-CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecC-CCCcCC-eeEeEECHhHHHHHH
Confidence 3455688888876 49999999999999 9999999999999999999752 112211 124777877775553
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.022 Score=44.47 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 20 ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 20 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
....+++++.+.|... |+..|.. ++.+..||++.+ ++ ++..+.+.|+.|+..|+|++.. .+
T Consensus 24 ~~~~~l~~l~~~w~l~---------IL~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~-~~ 85 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVL---------ILVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVS-YP 85 (131)
T ss_dssp THHHHHHHHHSHHHHH---------HHHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEE-EC
T ss_pred CHHHHHHHHcCCcHHH---------HHHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEe-cC
Confidence 3455556655555544 3444554 489999999999 79 9999999999999999999752 11
Q ss_pred CCCccccccccchhchhhh
Q 017777 99 PDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~ 117 (366)
.|+. .-.|.+|+.+..+.
T Consensus 86 ~d~r-~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 86 VVPP-HVEYSLTPLGEQVS 103 (131)
T ss_dssp SSSC-EEEEEECHHHHHHH
T ss_pred CCCC-eEEEEECccHHHHH
Confidence 2211 24699998887655
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.024 Score=42.88 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhccccccccccc
Q 017777 19 EANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRN 97 (366)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 97 (366)
-....+++++.+.|... |+..|.. ++.+..|||+.+ ++ ++..+.+.|+.|+..|+|++...
T Consensus 10 c~~~~~l~~l~~~~~~~---------IL~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~- 71 (112)
T 1z7u_A 10 TSINLALSTINGKWKLS---------LMDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESF- 71 (112)
T ss_dssp HHHHHHHHTTCSTTHHH---------HHHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred CCHHHHHHHHcCccHHH---------HHHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeec-
Confidence 34555566555555544 3444554 389999999999 99 99999999999999999987521
Q ss_pred CCCCccccccccchhchhhh
Q 017777 98 LPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 98 ~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.|+. .-.|.+|+.+..+.
T Consensus 72 ~~d~r-~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 72 NELPP-RVEYTLTPEGYALY 90 (112)
T ss_dssp CCSSC-EEEEEECHHHHHHH
T ss_pred CCCCC-eEEEEECHhHHHHH
Confidence 12211 23588998877554
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.034 Score=44.10 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
+|.|.++||+.+++ ++..++++|..|...|+|... .|+ .+.|.+.+.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSV-----RGA-KGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----SSS-SSEEEESSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEec-----CCC-CCCeeecCC
Confidence 48999999999999 999999999999999999852 232 467887643
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.024 Score=49.52 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=47.6
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+.|++.|...+ +++|+.|||+.+++ +..-+.|+|+.|+..|||+++ . ++.|++++...
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~----~----~~~Y~lg~~~~ 68 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----K----DKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECTHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC----C----CCcEEECHHHH
Confidence 45677777642 47999999999999 999999999999999999963 1 47899887543
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.013 Score=51.64 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=49.0
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|||+++ ++.|++++....+.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHHHHH
Confidence 34566666432 58999999999999 999999999999999999963 47899988765554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.11 Score=50.74 Aligned_cols=110 Identities=14% Similarity=0.031 Sum_probs=68.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------------CCCeEEEecc-hhHHhhCCC------CCCceE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------------PSIKGINFDL-PHVIQDAPA------FPGVEH 248 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~v~~ 248 (366)
..-+++.+. .....+|+|-.||+|.++....+.. ....++|+|+ +.+...++. .....+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 344445444 4456799999999999988766542 1346889987 655555442 134567
Q ss_pred EEccCCC-CCC------CCCEEEecccccc-CC-------------hHHHHHHHHHHHHhCC-------CCcEEEEEcc
Q 017777 249 VGGDMFV-SVP------KGDAIFIKWICHD-WS-------------DEHCVKFLKNCYEALP-------VNGKVIVAES 299 (366)
Q Consensus 249 ~~~D~~~-~~~------~~D~i~~~~~lh~-~~-------------~~~~~~~L~~~~~~L~-------pgG~lli~e~ 299 (366)
..+|.+. +.. ..|+|+.+--+-. +. .+....++..+.+.|+ |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 7788765 321 2399998755521 11 1112356777888886 7999888743
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.034 Score=44.63 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=48.6
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQR-DEKDRR-SYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC---C-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCC-eeEEEECHHHHHHH
Confidence 4457777665 58999999999999 9999999999999999998752 112211 12467777776555
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.025 Score=41.56 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=50.3
Q ss_pred hhChHHHHhhcCCCCCCCHHHH----HhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDI----ASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~el----a~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..|... ++.|..+| |+.+++ ++..+.+.++.|+..|++++.. .+ . ...|.+|+.+..++
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~---~~-r-~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQ---ER-G-EKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEE---ET-T-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEe---cC-C-ceEEEECHHHHHHH
Confidence 45567777664 48999999 999999 9999999999999999998742 11 0 35678888777665
Q ss_pred c
Q 017777 118 K 118 (366)
Q Consensus 118 ~ 118 (366)
.
T Consensus 78 ~ 78 (99)
T 1tbx_A 78 I 78 (99)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.027 Score=45.83 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=50.0
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.|+..|...+ ++.|..+||+.+++ +...+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..++
T Consensus 53 ~~q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 53 QTHWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeC-CCCCCC-eeEEEECHHHHHHH
Confidence 44667788887622 47999999999999 9999999999999999999741 111211 12466777666555
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.11 Score=41.18 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=47.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc-ccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL-RNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~-~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..| .. ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. ..+.|+. .-.+.+|+.+..+.
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R-~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQR-LKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCC-eeEEEECHhHHHHH
Confidence 44488888 54 59999999999999 9999999999999999999620 0122221 13466776666554
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.012 Score=43.54 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=45.5
Q ss_pred HHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 37 LKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 37 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
+.--.++.|+..|... ++.++.|||+.+|+ ++..+.+.|+.|... ++... .+|+ .-.|++++.
T Consensus 24 L~~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~----~~gr-~~~y~l~~~ 86 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRN----RQGL-EIYYSINNP 86 (99)
T ss_dssp HCSHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEE----EETT-EEEEECCCH
T ss_pred hCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhhe----EeCc-EEEEEEChH
Confidence 3344556677444433 48999999999999 999999999999999 99853 2332 245666643
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.068 Score=47.30 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCCCeEEEEeC------CccHHHHHHHHhCCC-CeEEEecchhHHhhCCCCCCceEEEccCCCC-CCC-CCEEEecccc
Q 017777 199 FEGLNSVVDVGG------GIGATLNMIISKYPS-IKGINFDLPHVIQDAPAFPGVEHVGGDMFVS-VPK-GDAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~~~-~D~i~~~~~l 269 (366)
.+.+.+|||+|+ ..|.. .+.+..|. ..++.+|+.++...+ . .++.+|..+. ... .|+|++-..-
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 346789999996 67774 33444676 689999985544211 2 4588887652 222 2888773221
Q ss_pred c---cC------ChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 270 H---DW------SDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 270 h---~~------~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
. +- ...-+..+|.=+.+.|+|||.+++-
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 1 00 1112457788889999999999985
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.046 Score=42.67 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=53.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+.. .+.|+. .-.|.+|+.+..+.
T Consensus 31 ~~~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~-~~~d~r-~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 31 LTRYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKR-NPDNQR-EVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 3456688888875 48999999999999 9999999999999999998752 112221 23588888888666
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.0078 Score=53.10 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=48.6
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFL 116 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l 116 (366)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|||+++ .+ .+.|++++....+
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~----~~---~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV----EG---ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC----SS---SSEEEECTTHHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc----CC---CCcEEcCHHHHHH
Confidence 44677776532 58999999999999 999999999999999999974 11 3789998765433
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.051 Score=43.93 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
+|.|+++||+.+++ ++..++++|..|...|+|... .|+ .|.|.+++
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSI-----RGA-HGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----CST-TCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe-----cCC-CCceEecC
Confidence 58999999999999 999999999999999999853 232 46687763
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.049 Score=43.29 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=51.3
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTR-AASDER-QVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CcccCC-eeEeeECHHHHHHHH
Confidence 456678888775 48999999999999 9999999999999999999741 111111 125778888876654
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.11 Score=41.60 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=49.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. ...+.+|+.+..+.
T Consensus 50 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRET-HGDDRR-RSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeec-CCCCCC-eeEEEECHHHHHHH
Confidence 356678888775 59999999999999 9999999999999999998741 111211 13467777766555
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.012 Score=51.94 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=46.8
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|||+++ ++.|++++...
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD---------GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHHH
Confidence 44666676432 48999999999999 999999999999999999963 47899987654
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.032 Score=43.91 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=43.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|..+||+.+++ ++..+.+.|+.|+..|+|.+. . ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~----~----~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE----K----YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE----T----TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----e----CceEEEchhHHHHH
Confidence 48999999999999 999999999999999999973 1 36788998877555
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.12 Score=40.94 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=49.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 44 ~~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVA-DAKDKR-RVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCcCC-eeEeEECHHHHHHH
Confidence 455677777765 58999999999999 9999999999999999998741 011211 13467777776555
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.13 Score=41.54 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=51.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 45 ~~~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 45 IPQFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLP-HPTSRR-ELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHHHH
Confidence 3456678888775 48999999999999 9999999999999999998742 112211 12367777776554
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.045 Score=42.53 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~r-~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 33 YVQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEK-NPNDQR-ETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeecc-CCCCCc-eeEEEECHHHHHHH
Confidence 3456678888775 48999999999999 9999999999999999998742 112211 12367777766554
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.051 Score=42.76 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=51.5
Q ss_pred HHHhhChHHHHhh-cCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 39 SAIELDLLEIIAK-AGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 39 ~a~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..++.++..|.. . ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 34 ~~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCC-CCCCCC-ceeeEECHHHHHHH
Confidence 3456778888886 5 59999999999999 9999999999999999998741 111211 12367777776555
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.034 Score=43.92 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. ...+.+|+.+..+.
T Consensus 40 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNG-HSEDKR-TYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeec-CCCCcc-eeEeEECHhHHHHH
Confidence 4566788888876 49999999999999 9999999999999999999741 112211 23467777666555
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.032 Score=48.61 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=52.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.++.|+..|... ++.|..|||+.+++ ++.-+.|.|+.|...|++++. ++ ...|.+|+.+..+..
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~---~r----~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK---GK----DRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TT----TTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CC----ccEEEECHHHHHHHH
Confidence 456677777665 48999999999999 999999999999999999973 11 467999998886653
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.04 Score=43.40 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 31 ~~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 31 YNLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQE-GEQDRR-KRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECC-CSSCGG-GSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCc-eeeeeEChhHHHHH
Confidence 3567788888776 48999999999999 9999999999999999999741 112211 13477887777655
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.083 Score=42.76 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=48.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
..++.++..|...+ +++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..++.
T Consensus 46 ~~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 46 AQQYNTLRLLRSVH-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTR-KPENRR-VVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHHT-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecC-CCCCCC-eeEeEECHHHHHHHH
Confidence 34566777777631 148999999999999 9999999999999999999742 111110 124677777775553
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.14 Score=40.98 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=50.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSI-SDADQR-KRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC----CCC-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CcccCC-eeEeeECHHHHHHH
Confidence 455678888775 48999999999999 9999999999999999999741 112211 13467777776555
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.016 Score=48.13 Aligned_cols=74 Identities=24% Similarity=0.360 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP-TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+.+|.--.++.|+..|.+ +|.|+.+||+.++ + +...+.+.|+.|...|+|+...+....|.....|++++
T Consensus 16 ~~~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~ 87 (182)
T 4g6q_A 16 LVDLLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNT 87 (182)
T ss_dssp HHHHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECT
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecc
Confidence 3455566678889999987 5999999999996 8 88999999999999999986422111122234677776
Q ss_pred hch
Q 017777 112 VCK 114 (366)
Q Consensus 112 ~~~ 114 (366)
...
T Consensus 88 ~~~ 90 (182)
T 4g6q_A 88 QAG 90 (182)
T ss_dssp TTT
T ss_pred ccc
Confidence 544
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.15 Score=40.19 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=43.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|...+ +++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 42 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQ-ESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRI-PENNAR-QKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHT-TTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC----------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeC-CCCCch-hheeeECHHHHHHH
Confidence 3456777777641 148999999999999 9999999999999999999741 111211 12466777766555
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.067 Score=47.96 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=38.6
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA 242 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 242 (366)
.+..++..+. .....|||++||+|..+..++.. +.+++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 4555666553 35679999999999999988774 468999998 777776653
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.02 Score=50.38 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=45.7
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|||.++ . ++.|++++...
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~----~----~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR----A----DGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECHHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----C----CCeEEecHHHH
Confidence 34556665321 48999999999999 999999999999999999974 1 23899987544
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.044 Score=43.65 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=54.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCC
Q 017777 22 LLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDG 101 (366)
Q Consensus 22 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g 101 (366)
+..++++...|...+|. .|.. ++.+..||++.+++ ++..+.+.|+.|+..|+|++.. .+.++
T Consensus 15 ~~~l~~l~~~w~l~IL~---------~L~~----g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~-~~~d~ 76 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVR---------DAFE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVP-AESGS 76 (146)
T ss_dssp TTTHHHHCSSSHHHHHH---------HHHT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE-CSSSS
T ss_pred HHHHHHhCCchHHHHHH---------HHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEe-cCCCC
Confidence 34566666666554443 3434 48999999999999 9999999999999999999752 11111
Q ss_pred ccccccccchhchhhh
Q 017777 102 KVERLYGLAPVCKFLT 117 (366)
Q Consensus 102 ~~~~~y~~t~~~~~l~ 117 (366)
.-.|.+|+.+..+.
T Consensus 77 --~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 --HQEYRLTDKGRALF 90 (146)
T ss_dssp --CEEEEECHHHHTTH
T ss_pred --eEEEEECchHHHHH
Confidence 24788888776544
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.078 Score=42.99 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=40.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
.+.|.++||+.+++ ++..++++|..|...|+|+-. .|+ .+.|++.+..
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT-----VGK-NGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE-----CST-TCEEECCSCG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeEecCCh
Confidence 48999999999999 999999999999999999753 232 4678887543
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.032 Score=43.87 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=51.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREI-STEDRR-ISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-----CC-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccC-CCccCc-eeeeeECHHHHHHH
Confidence 4566678888775 49999999999999 9999999999999999999741 112211 13467777776555
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.068 Score=41.92 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=50.1
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|. . ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~r-~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 37 YLDFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVR-DREDRR-KILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeec-CCCCCc-eEEEEECHHHHHHH
Confidence 34566777777 4 59999999999999 9999999999999999998742 111211 12467777666554
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.039 Score=42.49 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=41.4
Q ss_pred HhhChHHHHhhcCCCCC-CCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAF-MSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..|+..|...+ +| +|+.|||+.+++ +..-+.|.|+.|+..|+|.+.
T Consensus 27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 4566788887653 45 899999999999 999999999999999999874
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.069 Score=41.42 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..|..+||+.+++ ++.-+.+.++.|+..|+|.+.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999974
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.16 Score=38.45 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=51.4
Q ss_pred cCCCCCccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccc
Q 017777 10 ISPAQGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYS 89 (366)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g 89 (366)
-||...-+...+..+..++. ++....++.||..|.+ ++.++.+||+.+++ ++..+.+.|+.|...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~G 73 (119)
T 2lkp_A 8 NRPSAPLDSQAAAQVASTLQ------ALATPSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLG 73 (119)
T ss_dssp CCCCSCCHHHHHHHHHHHHH------HHCCHHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHC
T ss_pred CccccccCHHHHHHHHHHHH------HhCCHHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCC
Confidence 34444444444444333332 3333557778888887 38999999999999 9999999999999999
Q ss_pred ccccc
Q 017777 90 VLNCS 94 (366)
Q Consensus 90 ~l~~~ 94 (366)
++...
T Consensus 74 lv~~~ 78 (119)
T 2lkp_A 74 LVVGD 78 (119)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99863
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.072 Score=42.41 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=52.0
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCcc-eeEEEECHHHHHHH
Confidence 4567788888876 48999999999999 9999999999999999998742 112211 12466777766554
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.092 Score=41.96 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=48.4
Q ss_pred HhhChHHHHh-hcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIA-KAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|. .. ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNP---DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAM-SADDRR-SFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCT---TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC----------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCCC-eEEEEEChhHHHHH
Confidence 3566888884 43 58999999999999 9999999999999999999741 111111 12366777666554
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.055 Score=42.84 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=48.9
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ +++|..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 39 ~~q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 39 VRSYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTL-DPSDRR-NKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-------------CEECHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeC-Cccccc-hheeeECHHHHHHH
Confidence 45666777786543 47899999999999 9999999999999999999741 111110 12367777776555
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.2 Score=39.36 Aligned_cols=68 Identities=6% Similarity=0.036 Sum_probs=50.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 43 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 43 PQFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVR-DEHDRR-VVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCcc-eeEeEECHhHHHHH
Confidence 355677788775 48999999999999 9999999999999999998742 112211 12467777766554
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.06 Score=41.86 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=50.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecC-CcccCc-eeEeEEChhHHHHH
Confidence 455677777765 48999999999999 9999999999999999998742 112211 12467777776555
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.065 Score=39.00 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=46.5
Q ss_pred hHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcch-HHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 45 LLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTV-LDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 45 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++..|...+ .+.|..|||+.+++ ++.. +.+.++.|+..|+|..+ +.|+. .-.+.+|+.+..+.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~---~~drR-~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEE---TLSYR-VKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEE---EEETT-EEEEEECHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecC---CCCCC-eEEEEECHhHHHHH
Confidence 455555541 27999999999999 9999 99999999999999843 12211 23467787776555
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.063 Score=41.73 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 38 PTQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSA-DPDDGR-RLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCCC-eeeeEECHhHHHHH
Confidence 3467788888775 48999999999999 9999999999999999998741 011110 12477777766554
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.056 Score=39.98 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=41.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
..++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 20 ~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 20 PSDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 3456677777665 48999999999999 999999999999999999974
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.066 Score=45.12 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=52.8
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+.+|....++.|+..|.. +|.++.+||+.+++ ++..+.+.|+.|...|+|.........|...-.|.+++..
T Consensus 9 lkaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 9 LDVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 445556667777888866 59999999999999 9999999999999999998742100011113457777654
Q ss_pred h
Q 017777 114 K 114 (366)
Q Consensus 114 ~ 114 (366)
.
T Consensus 81 ~ 81 (202)
T 2p4w_A 81 R 81 (202)
T ss_dssp E
T ss_pred H
Confidence 3
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.088 Score=41.30 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=48.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.|+..|... +.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~----~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~-~~~d~R-~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEE----SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSK-DSKDAR-VIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTC----CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC------------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEecc-CCCCCc-eeEEEECHhHHHHH
Confidence 4566778888774 4999999999999 9999999999999999998741 111221 23567776666544
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.058 Score=42.20 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 37 YPQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCcc-eEEEEEChHHHHHH
Confidence 4466778888775 48999999999999 9999999999999999998742 111211 13567777776554
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.067 Score=41.83 Aligned_cols=49 Identities=12% Similarity=-0.070 Sum_probs=41.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|..+||+.+++ ++..+.+.++.|+..|+|++. ...|.+|+.+..+.
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---------~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---------EDGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---------CCeEEEChhHHHHH
Confidence 58999999999999 999999999999999999963 25678887766543
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=92.60 E-value=0.056 Score=41.72 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=50.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... .+++.|..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 38 ~q~~vL~~l~~~-~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 38 EEFAVLTYISEN-KEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHHT-CCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 355577777664 1148999999999999 9999999999999999999741 112211 12466777766555
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.077 Score=38.80 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=43.8
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.+..+||+.+++ +...+.|.|..|...|+|+... ..|| .+...+|+.++.++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~--~~D~--R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV--EADG--RGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE--CTTS--CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec--CCCC--ceeEEECHHHHHHH
Confidence 58899999999999 9999999999999999999753 2344 34567777776544
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.46 E-value=0.074 Score=41.65 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=48.4
Q ss_pred HhhChHHHH-hhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEII-AKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L-~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..| ... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 38 ARWLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADVLI 106 (146)
T ss_dssp THHHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecC-CCcccC-eeeeEECHhHHHHH
Confidence 345577777 543 58999999999999 9999999999999999998741 111111 12356666555444
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.031 Score=43.83 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=49.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTR-EEKDER-NLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecC-CCCCcc-eeeeeEChHHHHHH
Confidence 445566667654 59999999999999 9999999999999999999742 112211 13577787777655
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.073 Score=41.84 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~R-~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 40 YPQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHHHHH
Confidence 4566778888775 48999999999999 9999999999999999998742 111211 234778888776664
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.06 Score=38.07 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=41.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
--+..|++.|.+.+ +++.|++||++.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 17 ~~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 17 LPRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 34566888887630 0389999999999 88 999999999999999999874
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=92.32 E-value=0.061 Score=41.90 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=51.1
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ +++.|..+||+.+++ ++..+.+.++-|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 31 ~~~~~vL~~l~~~~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~D~R-~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 31 NEQGHTLGYLYAHQ-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYV-DAQDTR-RKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHHST-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC--C-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CCCCCC-eeeeEECHHHHHHH
Confidence 34566777777641 138999999999999 9999999999999999999752 122221 13466777776555
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.072 Score=42.14 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=50.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRT-NPEHAR-SHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CSSSTT-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Cccccc-ceeeEEChhhHHHH
Confidence 355678888775 48999999999999 9999999999999999999741 111211 12466777666544
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.049 Score=43.20 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=49.5
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 41 ~~q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRER-QQSDKR-QLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-----------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCC-CCCCcc-eeeeeECHHHHHHH
Confidence 4566778888775 59999999999999 9999999999999999999741 111211 12466776666544
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.073 Score=41.30 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... +.|+. .-.+.+|+.+..+.
T Consensus 29 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~-~~d~R-~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 29 DAQVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQD-PENRR-RYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEEE-EEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecC-CCCce-eEEeeECHhHHHHH
Confidence 3456677788775 58999999999999 99999999999999999997410 11110 12366777666544
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.074 Score=42.22 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=51.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc--ccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC--SLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++ .. .+.|+. .-.+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~~~d~R-~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKT-IPNDSM-DLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC---CTTCT-TCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcC-CCCCCc-eeEeEECHHHHHHH
Confidence 456677888775 48999999999999 99999999999999999997 41 112211 12577887776555
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.01 E-value=0.1 Score=40.57 Aligned_cols=70 Identities=10% Similarity=0.223 Sum_probs=49.6
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|...+ ..+.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. ...+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeC-CCcCCC-eeeeEECHHHHHHH
Confidence 3555677777752 127999999999999 9999999999999999998742 111211 12466776665444
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.07 Score=42.82 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=51.3
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 52 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 52 TAKMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREV-DSDDQR-SSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-C--CCS-SEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 4466788888875 58999999999999 9999999999999999998741 111211 23467777666544
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.89 E-value=0.053 Score=42.32 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 36 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 36 EQQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK-APKDQR-RVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCC-eeEEEECHHHHHHH
Confidence 4466778888775 48999999999999 9999999999999999998742 111110 12367777776555
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.083 Score=41.33 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=50.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 30 ~~~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 30 GQYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNVY 97 (144)
T ss_dssp THHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCc-eeeeEEChhHHHHH
Confidence 345577777775 48999999999999 9999999999999999998742 111211 12367777766554
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.12 Score=41.22 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 47 EIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 47 ~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..|... ++.|..+||+.+++ ++..+++.|+.|+..|+|+.. . +..+.+|+.+..+.
T Consensus 47 ~~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~-----~---~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 47 DLIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI-----P---WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE-----T---TTEEEECHHHHHHH
T ss_pred HHHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe-----c---CCceEEChhHHHHH
Confidence 355554 48999999999999 999999999999999999863 1 35577887776544
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=91.70 E-value=0.073 Score=42.47 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=44.3
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchh
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPV 112 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (366)
.+|++.+.+... .. ++.|+++||+.+++ ++..++++|..|...|+|+.. .| .+.|.+.+.
T Consensus 15 yAl~~L~~La~~---~~----~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~-----rG--~GGy~L~~~ 74 (149)
T 1ylf_A 15 IAVHILSILKNN---PS----SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN-----RG--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHS---CG----GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred HHHHHHHHHHhC---CC----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEc-----cC--CCceEeCCC
Confidence 455555555431 12 48999999999999 999999999999999999852 23 466777754
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=91.55 E-value=0.15 Score=37.04 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=49.4
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHh-hCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIAS-QLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~-~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++.|+-.|... ++.|+.+||+ .+++ +...+.|-++.|...|+|+.+ . +| ..+|+.+..++.
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~----~----~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS----G----DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE----T----TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC----C----CC-eeeCHhHHHHHH
Confidence 45566667776 4999999999 9999 999999999999999999832 1 34 888888876664
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.54 E-value=0.088 Score=41.20 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=51.5
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~-~~~d~r-~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 33 PAQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTP-DPADRR-AYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCCc-eEEEEECHHHHHHH
Confidence 3466778888775 48999999999999 9999999999999999999741 011110 12477777776555
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=91.44 E-value=0.1 Score=39.00 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=38.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.++.|+..+...+ .+.|..+||+.+|+ +..-+++.|+.|...|+|+.
T Consensus 19 ~~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 19 DVIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp TTHHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3455666664331 27899999999999 99999999999999999986
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.12 Score=41.09 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=41.3
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 456788888875 58999999999999 99999999999999999985
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.16 Score=40.48 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=49.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|...+ .+.+..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 32 ~q~~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~-~~~DrR-~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 32 THWVTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT-SANDRR-AKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec-CCCCCc-chhhhcCHHHHHHH
Confidence 3455666776542 36788999999999 9999999999999999998752 122211 12467777776555
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=91.06 E-value=0.13 Score=40.82 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=40.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 355678888775 58999999999999 99999999999999999975
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.00 E-value=0.14 Score=40.39 Aligned_cols=46 Identities=17% Similarity=0.406 Sum_probs=40.9
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|++.|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 345678888875 58999999999999 99999999999999999985
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=90.95 E-value=0.45 Score=37.48 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=49.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH-NTKDRR-VIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC-CCCCCc-eEEEEECHHHHHHH
Confidence 45577888765 48999999999999 9999999999999999998742 111211 12466776666544
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=90.58 E-value=0.17 Score=42.23 Aligned_cols=53 Identities=9% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+.++....+..|+..|.+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 14 ~k~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 14 IKVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 344455667788999985 59999999999999 999999999999999999864
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=90.55 E-value=0.15 Score=40.53 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=40.9
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 355678888875 59999999999999 99999999999999999985
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=90.32 E-value=0.17 Score=40.80 Aligned_cols=46 Identities=9% Similarity=0.260 Sum_probs=40.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 345678888875 58999999999999 99999999999999999985
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.42 Score=37.22 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ + |..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~~---~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 37 YLDFSILKATSEEP---R-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIR-DSKDRR-IVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHHSC---E-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCC---C-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc-CCCCCc-eEEEEECHHHHHHH
Confidence 34567888888753 5 99999999999 9999999999999999999742 111100 11478888777555
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.14 Score=42.39 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=54.1
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
+..++.++..|...+ .++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..++.
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIP-SPHDKR-AINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHHHHH
Confidence 456677888887521 158999999999999 9999999999999999999752 122211 135788888876553
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.21 E-value=0.21 Score=39.71 Aligned_cols=46 Identities=15% Similarity=0.372 Sum_probs=41.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 455688888875 59999999999999 99999999999999999985
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.18 Score=40.64 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=41.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|++.|.+. +++|..+||+++|+ ++..+++-++.|...|++..
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 456788899875 69999999999999 99999999999999999984
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=89.87 E-value=0.19 Score=39.34 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=39.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+..|+..|... ++.+..|||+.+|+ ++..+.+.|+.|...|++..
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 45677788765 58999999999999 99999999999999999985
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=89.86 E-value=0.33 Score=38.39 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=37.7
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+ |+++||+.+++ ++..++++|..|...|+|... -| .+.|.+.+..
T Consensus 24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~-----rG--~GGy~Lar~p 68 (145)
T 1xd7_A 24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSR-----AG--VPGASLKKDP 68 (145)
T ss_dssp C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC-----SS--SSSCEESSCG
T ss_pred C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEee-----cC--CCCceecCCH
Confidence 5 99999999999 999999999999999999853 23 3667777543
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=89.75 E-value=0.18 Score=40.19 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=41.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 345678888875 58999999999999 99999999999999999985
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=89.67 E-value=1.2 Score=35.33 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=51.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcccccccccccCC----CCccccccccchhchh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLP-TKNPDAHTVLDRILRLLASYSVLNCSLRNLP----DGKVERLYGLAPVCKF 115 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~----~g~~~~~y~~t~~~~~ 115 (366)
.++.|+..|...+ .+..|+++|++.++ + ++.-+.+.|+.|+..|+|++... +. .|.-...|++|+.+..
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~-~~~~~~rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPV-PRAKSVDDPPTTFYAVTGEGIA 103 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEC-CCCTTSSSCCCEEEEECHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeec-CcCcccCCCCceEEEECHHHHH
Confidence 4555666665531 24579999999999 8 99999999999999999986411 10 0111237999999986
Q ss_pred hhc
Q 017777 116 LTK 118 (366)
Q Consensus 116 l~~ 118 (366)
.+.
T Consensus 104 ~l~ 106 (151)
T 3u1d_A 104 LLR 106 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.24 Score=38.74 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=39.4
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
..|.++||+++++ ++.-+.++|+-|...|+|+..+..+.+|+....|.+++.-.
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 5799999999999 99999999999999999997422112222224555554443
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=89.53 E-value=0.17 Score=41.45 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=49.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.|+..|...+..++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 45667888877531012899999999999 9999999999999999999741 111111 12467777666554
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=89.37 E-value=0.17 Score=36.74 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.|..+||+.+++ ++..+.++++.|+..|+|.. +.|+. ...|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~----~~d~R-~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVEC----ELEGR-TKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEE----EEETT-EEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccC----CCCCC-eEEEEEChhHHHHH
Confidence 3899999999999 99999999999999999932 12211 13588888877655
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=89.33 E-value=0.15 Score=43.03 Aligned_cols=69 Identities=17% Similarity=-0.007 Sum_probs=50.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.|+..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 48 ~~q~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 48 INEHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCc-eEEEEECHHHHHHH
Confidence 3455677778765 48999999999999 9999999999999999998742 111211 12577888777555
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.17 E-value=0.23 Score=40.47 Aligned_cols=46 Identities=15% Similarity=0.331 Sum_probs=40.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 345678888875 58999999999999 99999999999999999975
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=89.09 E-value=0.51 Score=35.77 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=53.8
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC--------CCCCCCc-chHHHHHHHHhcccccccccccCCCCccccc
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP--------TKNPDAH-TVLDRILRLLASYSVLNCSLRNLPDGKVERL 106 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~--------~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~ 106 (366)
++.-..++-|+..|.. +|.+.-+|++.++ + ++ ..+.+.|+-|+..|+|+..... .+|+..-.
T Consensus 9 ~~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~-~~~~~r~~ 79 (118)
T 2esh_A 9 FRGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDT-TVSPPRKI 79 (118)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEEC-SSSSCEEE
T ss_pred cccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeec-CCCCCceE
Confidence 3445566777888877 4999999999883 6 88 8999999999999999874211 12211346
Q ss_pred cccchhchhhh
Q 017777 107 YGLAPVCKFLT 117 (366)
Q Consensus 107 y~~t~~~~~l~ 117 (366)
|.+|+.+...+
T Consensus 80 Y~LT~~G~~~l 90 (118)
T 2esh_A 80 YRITPQGKLYL 90 (118)
T ss_dssp EEECHHHHHHH
T ss_pred EEEChHHHHHH
Confidence 89999888655
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=88.64 E-value=0.14 Score=36.07 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=39.8
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..|+..|... ++.|+.||++.++.....++.-+.++|+.|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677777764 589999999999731001788999999999999999974
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=88.56 E-value=0.2 Score=42.46 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=43.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.+..+||+.+++ ++..+.+.++-|...|+|++. . ...+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~----~----~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD----K----KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T----TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe----c----CCCeEECHHHHHHH
Confidence 68999999999999 999999999999999999974 1 35688888887655
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=88.50 E-value=0.22 Score=36.61 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.|..|||+.+++ +..-+.+.|+.|...|+|...
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 48999999999999 999999999999999999974
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=88.48 E-value=0.13 Score=44.36 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=45.9
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+.+|.-..++.|+..|.. +|.|+.+||+.+++ ++..+.+.|+.|...|+|..
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 455666677888888886 59999999999999 99999999999999999986
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=88.30 E-value=0.48 Score=35.94 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=54.6
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccc
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYG 108 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 108 (366)
+.++-.+++=|+..|.+ +|.+.-+|++.+ ++ ++..+...|+-|+..|+|+........|+..-.|+
T Consensus 6 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 77 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYS 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEE
T ss_pred HHHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEE
Confidence 34555566667778877 499999999987 67 89999999999999999986421111122134699
Q ss_pred cchhchhhhc
Q 017777 109 LAPVCKFLTK 118 (366)
Q Consensus 109 ~t~~~~~l~~ 118 (366)
+|+.++..+.
T Consensus 78 LT~~G~~~l~ 87 (117)
T 4esf_A 78 LNEAGRQELE 87 (117)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9998886553
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=87.83 E-value=0.15 Score=40.35 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=46.6
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+.++..|... ++++.|..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 38 ~~vL~~L~~~-~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFS-KSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP-NPNDGR-GTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTS-GGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC-----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee-cCCcCc-eeEEEECHHHHHHH
Confidence 3455555421 1158999999999999 9999999999999999999752 112211 12366777776554
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=87.76 E-value=0.84 Score=40.29 Aligned_cols=97 Identities=18% Similarity=0.005 Sum_probs=67.7
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----CCceEEEccCCC------CCC-CCCEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----PGVEHVGGDMFV------SVP-KGDAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~------~~~-~~D~i~~~~~l 269 (366)
...+||+=+|+|.++.+++. +.-+++.+|. +..++..+++ .+++++..|.+. +.+ ..|+|++---.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 46789999999999999998 4467899997 6666655543 579999999754 122 23999886554
Q ss_pred ccCChHHHHHHHHHHHHh--CCCCcEEEEEccccC
Q 017777 270 HDWSDEHCVKFLKNCYEA--LPVNGKVIVAESILP 302 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~--L~pgG~lli~e~~~~ 302 (366)
.. ..+..++++.+.+. +.|+|.++|.=++..
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 42 12344556666553 468999999766654
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=87.74 E-value=0.24 Score=36.46 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=40.5
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.++.|+..|-+. ++.|+.||++.++...+.++.-+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 356678888765 599999999999851111578899999999999999974
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=86.82 E-value=0.41 Score=37.07 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 9 ~T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence 3566778899997643 589999999998 66 888899999999999999875
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=86.81 E-value=0.27 Score=38.46 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=38.5
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..++..|...+ +|.|..|||+.+++ ++..+.+.|+.|+..|+|++.
T Consensus 28 ~~~il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 28 VGAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 334566664211 58999999999999 999999999999999999974
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=0.32 Score=38.47 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=42.0
Q ss_pred hhChHHHHhhcC--CCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAG--PDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~--~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..|...+ ..+++|..+||+.+++ ++..+.++++-|+..|+|... .+.|+. .-...+|+.+..+.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~--~~~DrR-~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM--AGADAR-CKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--------------CCBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee--CCCCCC-eeEEEECHHHHHHH
Confidence 445566665432 1246899999999999 999999999999999999542 122221 12466776666554
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=86.70 E-value=2.7 Score=38.92 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=38.3
Q ss_pred CchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------CCCeEEEecchh
Q 017777 170 DLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------PSIKGINFDLPH 235 (366)
Q Consensus 170 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~ 235 (366)
.|+....|.+....+.. ....... .+.+.+|+|+|+|.|.++..+++.. ..++++.++..+
T Consensus 54 apeis~~FGe~la~~~~----~~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 54 SPEISQMFGELLGLWSA----SVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp HHHHCHHHHHHHHHHHH----HHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCchHHHHHHHHHHHHH----HHHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 35555566665544321 1222233 3445689999999999999887653 345788888733
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=86.61 E-value=0.41 Score=36.34 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcccccccccccCCCCcccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLP------TKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLY 107 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 107 (366)
.++++-..++-|+..|.+ +|.+.-+|++.++ + ++..+.+.|+-|+..|+|+........|+..-.|
T Consensus 8 ~~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y 79 (117)
T 3elk_A 8 ERILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVY 79 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEE
T ss_pred HHHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEE
Confidence 345566677778888887 4999999999886 6 7889999999999999998642111122113479
Q ss_pred ccchhchhhhc
Q 017777 108 GLAPVCKFLTK 118 (366)
Q Consensus 108 ~~t~~~~~l~~ 118 (366)
++|+.++..+.
T Consensus 80 ~lT~~G~~~l~ 90 (117)
T 3elk_A 80 HITDAGKKFLC 90 (117)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99999986553
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.49 E-value=0.44 Score=39.71 Aligned_cols=35 Identities=14% Similarity=-0.042 Sum_probs=32.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|.|..|||+.+|+ +...+.+.|+.|+..|++.++
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 48999999999999 788899999999999999963
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.44 E-value=0.37 Score=33.18 Aligned_cols=47 Identities=13% Similarity=0.266 Sum_probs=41.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+-.|++.|.+.+ .|++..+||+.+|+ +..-+...|..|-..|.|..
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccC
Confidence 3456788888875 69999999999999 99999999999999999884
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=86.35 E-value=0.72 Score=34.83 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=54.5
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcccccccccccCCCCcccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL--------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVER 105 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~ 105 (366)
.+.++-..++=|+..|.+ +|.+--+|.+.+ ++ ++..+.+.|+-|+..|+|+.......+|+..-
T Consensus 6 ~~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk 77 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRK 77 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEE
T ss_pred HHHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCce
Confidence 345556667777888887 489999998887 56 89999999999999999986421101222134
Q ss_pred ccccchhchhhh
Q 017777 106 LYGLAPVCKFLT 117 (366)
Q Consensus 106 ~y~~t~~~~~l~ 117 (366)
.|++|+.++..+
T Consensus 78 ~Y~LT~~G~~~l 89 (116)
T 3f8b_A 78 YYRLTEIGHENM 89 (116)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 699998888655
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=85.31 E-value=1.9 Score=37.51 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=64.0
Q ss_pred CCCeEEEEeCCccHHHHHHHHh-------CCCCeEEEecc----hhH------------------------Hh-------
Q 017777 201 GLNSVVDVGGGIGATLNMIISK-------YPSIKGINFDL----PHV------------------------IQ------- 238 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~------- 238 (366)
-+..|+|+|+-.|..+..++.. .++-+++++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3579999999999988876542 35678999982 321 00
Q ss_pred hCCC----CCCceEEEccCCCC-------CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 239 DAPA----FPGVEHVGGDMFVS-------VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 239 ~a~~----~~~v~~~~~D~~~~-------~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
..+. .++|+++.|++.+. .|.. |++++-.=.+ +.....+..+...|+|||.|++-+.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0111 16799999998762 2322 7776643221 3345789999999999999998664
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=85.06 E-value=0.54 Score=33.91 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=38.2
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++.|+..|.+.+ +..++..|||+++++ +..-+.+.|+.|+..|+|.+
T Consensus 22 q~~Vl~~I~~~g-~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAG-NKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHC-TTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 345566666521 027999999999999 99999999999999999984
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=84.80 E-value=0.94 Score=31.16 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
...|+.+||+++|+ +..-+.|.|.-|...|+|...
T Consensus 28 ~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 28 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 35899999999999 899999999999999999874
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.39 E-value=0.42 Score=30.71 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=40.9
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+-.|++.|..+| |-+.++.+|+..|+ +.+-+-.+|+-|++-|++..
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 446788999876 78899999999999 99999999999999999874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.30 E-value=4.3 Score=36.37 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCeEEEEeCCc-c-HHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCCCEEEeccccccCChHHH
Q 017777 202 LNSVVDVGGGI-G-ATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKGDAIFIKWICHDWSDEHC 277 (366)
Q Consensus 202 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~D~i~~~~~lh~~~~~~~ 277 (366)
..+|.=||+|. | .++..+.+.....+++++|. ++.++.+.+..-+.....|..+ -....|+|+++- |....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999883 3 34455555433237899997 5555555433222222333322 233459998753 33445
Q ss_pred HHHHHHHHHhCCCCcEEEE
Q 017777 278 VKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 278 ~~~L~~~~~~L~pgG~lli 296 (366)
..+++++...++||..++-
T Consensus 108 ~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTD 126 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhccCCCcEEEE
Confidence 6788999999999876544
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=84.17 E-value=0.7 Score=34.96 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=55.3
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcccccccccccCCCCcccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLY 107 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 107 (366)
.++++-..++=|+..|.+ +|.+--+|++.+ ++ ++..+...|+-|+..|+|+.......+|+..-.|
T Consensus 7 ~~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y 78 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFY 78 (116)
T ss_dssp HHHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEE
T ss_pred HHHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEE
Confidence 345555566667788887 499999999987 57 8999999999999999998642111122223469
Q ss_pred ccchhchhhhc
Q 017777 108 GLAPVCKFLTK 118 (366)
Q Consensus 108 ~~t~~~~~l~~ 118 (366)
++|+.++..+.
T Consensus 79 ~lT~~G~~~l~ 89 (116)
T 3hhh_A 79 RLTSSGEAELA 89 (116)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99998886553
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=84.12 E-value=0.62 Score=40.49 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ +++.|..|||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 158 ~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~-~~~DrR-~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 158 FVEFTILAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC-CCCCCC-eEEEEECHHHHHHH
Confidence 34566777887642 025899999999999 9999999999999999999752 122211 12456676666554
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=0.64 Score=36.68 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence 455667899997643 589999999999 55 888899999999999999875
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=83.66 E-value=0.6 Score=38.56 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccc-ccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSV-LNC 93 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~ 93 (366)
--...|++.|.+.+ ++.|..|||+.+++ +++-+++-++.|...|+ +..
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 44567888887632 47999999999999 99999999999999999 763
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=83.52 E-value=1.3 Score=38.61 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=37.4
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP 241 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 241 (366)
.++.++..+. .....|||..||+|..+....+. +.+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4556666543 45679999999999999987774 568999998 66666554
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=83.33 E-value=0.28 Score=37.19 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=38.6
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCC----CCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLP----TKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
++.|+..|... +|.|..+||+.++ + ++..+.++|+-|+..|+|.+.
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 44566666654 4899999999999 6 799999999999999999974
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=82.59 E-value=0.53 Score=37.21 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=52.6
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcccccccccccCCCCcccccc
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQL--------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLY 107 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 107 (366)
++.--.++-|+..|.+ +|.+.-||++.+ ++ ++..+.+.|+-|+..|+|+.......+|+..-.|
T Consensus 37 ~~~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y 108 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYY 108 (145)
T ss_dssp SGGGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEE
T ss_pred HhcCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEE
Confidence 3444566777777876 489999988887 57 8999999999999999998642110111113468
Q ss_pred ccchhchhhh
Q 017777 108 GLAPVCKFLT 117 (366)
Q Consensus 108 ~~t~~~~~l~ 117 (366)
.+|+.++.++
T Consensus 109 ~LT~~G~~~l 118 (145)
T 1xma_A 109 RITPEGIKYY 118 (145)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9998887655
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=82.07 E-value=0.89 Score=37.20 Aligned_cols=66 Identities=15% Similarity=0.325 Sum_probs=47.7
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcccccccccccCCCC-ccccccccch
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQL--------PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDG-KVERLYGLAP 111 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g-~~~~~y~~t~ 111 (366)
+++-|+..|.. +|.+.-||++.+ ++ ++..+.+.|+-|+..|+|+.... ..+| +..-.|.+|+
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~-~~~~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLE-PQEGKPDRKVYSITQ 73 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC----------CEEECH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEee-cCCCCCCceEEEeCh
Confidence 34557777877 499999999998 46 88999999999999999986421 1111 1134699999
Q ss_pred hchh
Q 017777 112 VCKF 115 (366)
Q Consensus 112 ~~~~ 115 (366)
.++.
T Consensus 74 ~G~~ 77 (179)
T 1yg2_A 74 AGRS 77 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=82.03 E-value=4.8 Score=37.07 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=70.9
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCe-EEEecc-hhHHhhCCC-CCCceEEEccCCCC----C-------CCCCEEEeccc
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIK-GINFDL-PHVIQDAPA-FPGVEHVGGDMFVS----V-------PKGDAIFIKWI 268 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~-------~~~D~i~~~~~ 268 (366)
.+++|+=||.|.++..+..+. .+ +..+|. +..++..+. .+...++++|+.+- . +..|+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 479999999999999998864 54 457776 555554443 36778888888751 1 12399887554
Q ss_pred cccCC-------hHHHHHHHH---HHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 269 CHDWS-------DEHCVKFLK---NCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 269 lh~~~-------~~~~~~~L~---~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
...|+ ++....++. ++.+.++| .+++.|.+..-. . .......+++.
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~gl~-------------s--------~~~~~~~~~i~- 136 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPGIM-------------Q--------EKYSGIRNKAF- 136 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTTTT-------------C--------GGGHHHHHHHH-
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchHhh-------------c--------cCcHHHHHHHH-
Confidence 43333 111222333 33344566 567777654321 0 00011245667
Q ss_pred HHHHcCCce
Q 017777 339 LAKAAGFQG 347 (366)
Q Consensus 339 ll~~aGf~~ 347 (366)
.|++.||.+
T Consensus 137 ~l~~~GY~v 145 (376)
T 3g7u_A 137 NLVSGDYDI 145 (376)
T ss_dssp HHHHTTEEE
T ss_pred HHHcCCCcc
Confidence 888999987
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=81.28 E-value=1.2 Score=32.64 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLA 86 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 86 (366)
.+.++||+..|.. |.+|-.|||+.+|+ +...+.|.=+.|.
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~ 83 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHH
Confidence 4566999999988 47999999999999 8888888766653
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=80.71 E-value=0.65 Score=34.03 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=38.4
Q ss_pred HHHHHhhChHH-HHhhcCCCCCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 37 LKSAIELDLLE-IIAKAGPDAFM-SPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 37 l~~a~~lglf~-~L~~~~~~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+.-.++..|.+ .+..+ ..+ |..+||+.+++ +..-+++-|+.|...|+|+..
T Consensus 16 l~~~i~~~I~~~~l~~g---~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 16 VATHFRTLIKSGELAPG---DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHTTTTSCCTT---SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCc---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 33444444544 33332 355 99999999999 999999999999999999863
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=80.61 E-value=1.2 Score=35.35 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=42.9
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcccccccc
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQL-----PTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence 667778999998743 589999999998 56 888899999999999999874
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=80.28 E-value=0.95 Score=33.63 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=50.5
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhh----CCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQ----LPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~----~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+-..++-|+..|.+ +|.+--+|++. +++ ++..+.+.|+-|+..|+|+.... +.+|+..-.|.+|+.+
T Consensus 7 ~g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~-~~~~r~r~~y~LT~~G 77 (108)
T 3l7w_A 7 ALLIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQ-EHQGRRRKYYHLTDSG 77 (108)
T ss_dssp HHHHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEE-EETTEEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEee-cCCCCcceEEEECHHH
Confidence 34456667777877 48887777766 578 99999999999999999987521 1122212358899888
Q ss_pred hhhh
Q 017777 114 KFLT 117 (366)
Q Consensus 114 ~~l~ 117 (366)
+..+
T Consensus 78 ~~~l 81 (108)
T 3l7w_A 78 EKHL 81 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 366 | ||||
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 2e-91 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 3e-88 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 2e-82 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 1e-49 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 3e-47 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 1e-46 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 4e-43 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 1e-18 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 4e-08 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 2e-07 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-06 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.001 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.003 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 0.003 |
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 272 bits (696), Expect = 2e-91
Identities = 194/243 (79%), Positives = 219/243 (90%)
Query: 121 DGVTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNG 180
DGV++S L LMNQDKVLMESWY+LKDAVL+GGIPFNKAYGM AF+YHG D RFNK+FN G
Sbjct: 1 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60
Query: 181 MSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDA 240
MS HSTITMKKILE Y GFEGL S+VDVGGG GA +N I+SKYP+IKGINFDLPHVI+DA
Sbjct: 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 241 PAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300
P++PGVEHVGGDMFVS+PK DA+F+KWICHDWSDEHC+KFLKNCYEALP NGKVIVAE I
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180
Query: 301 LPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIM 360
LPV PD+SLA+K V+H+D IMLAHNPGGKERT++EF LAK AGFQGF+V +AFNTYIM
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240
Query: 361 EFL 363
EFL
Sbjct: 241 EFL 243
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 264 bits (675), Expect = 3e-88
Identities = 119/243 (48%), Positives = 164/243 (67%), Gaps = 3/243 (1%)
Query: 124 TLSDLCLMNQDKVLMESWYYLKDAVLEGGI-PFNKAYGMNAFDYHGKDLRFNKIFNNGMS 182
L+ L++ W K+AV++ I F +G+ +++ GKD + N+IFN M
Sbjct: 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62
Query: 183 SHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA 242
MK++LE Y GFEG++++VDVGGG G L +IISKYP IKGINFDLP VI++AP
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122
Query: 243 FPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302
G+EHVGGDMF SVP+GDA+ +K +CH+WSDE C++FL NC++AL NGKVI+ E ILP
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182
Query: 303 VTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTY-IME 361
P+TS SK+V +D +M GG+ERTE+++ L+K +GF FQV AFN+ +ME
Sbjct: 183 EEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241
Query: 362 FLK 364
F K
Sbjct: 242 FYK 244
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 249 bits (636), Expect = 2e-82
Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 6/244 (2%)
Query: 123 VTLSDLCLMNQDKVLMESWYYLKDAVLEGGI-PFNKAYGMNAFDYHGKDLRFNKIFNNGM 181
+ L+ + D L S++ LK + E + F G +D+ K+ +N FN+ M
Sbjct: 1 LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60
Query: 182 SSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAP 241
+S S + + + F+GL S+VDVGGG G T +I +P +K I FD P V+++
Sbjct: 61 ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS 120
Query: 242 AFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVN---GKVIVAE 298
+ +VGGDMF S+P DA+ +K+I H+W+D+ C++ LK C EA+ + GKV + +
Sbjct: 121 GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180
Query: 299 SILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTY 358
++ D + +++ + +D M N GKER E+E++ L AGFQ +++
Sbjct: 181 MVIDKKKDENQVTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLS 238
Query: 359 IMEF 362
++E
Sbjct: 239 LIEI 242
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 159 bits (405), Expect = 1e-49
Identities = 78/107 (72%), Positives = 88/107 (82%)
Query: 14 QGSDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPD 73
SDEEANL AMQL SASVLPM+LKSA+ELDLLEIIAKAGP A +SP +IASQLPT NPD
Sbjct: 1 HISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPD 60
Query: 74 AHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNE 120
A +LDR+LRLLA Y +L CS+R DGKV+RLYGLA V K+L KNE
Sbjct: 61 APVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 153 bits (389), Expect = 3e-47
Identities = 58/109 (53%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Query: 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAG-PDAFMSPKDIASQLP--TKNP 72
+++ A L AM LT+ V P VL +AI+L+L EIIAKA P AFMSP +IAS+LP T++
Sbjct: 2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHS 61
Query: 73 DAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNED 121
D LDR+LRLLASYSVL + R + DG ER+YGL+ V K+L +E
Sbjct: 62 DLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 157 bits (397), Expect = 1e-46
Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 17/239 (7%)
Query: 137 LMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENY 196
++ L D V G + YG ++ D+ F+ MS + + + Y
Sbjct: 18 ADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY 77
Query: 197 KGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVS 256
+ + V+DVGGG G L I + P ++G +L + A + + V+
Sbjct: 78 D-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 136
Query: 257 V--------PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTS 308
D + + ++ +WSDE + L+ C AL G+++V +
Sbjct: 137 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV--EGDG 194
Query: 309 LASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV-----VSSAFNTYIMEF 362
+D ML GG+ RT E LA +AG + F+ I+EF
Sbjct: 195 ADRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 252
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 148 bits (373), Expect = 4e-43
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 13/219 (5%)
Query: 140 SWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGF 199
S+ L DA+ G + YG ++ F++ ++ + Y +
Sbjct: 20 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-W 78
Query: 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV---- 255
+ V+DVGGG G I + P + ++ + A ++ E + + V
Sbjct: 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 138
Query: 256 ----SVPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLAS 311
K DAI + ++ +W D V+ L C EAL G++++ E + +
Sbjct: 139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE---RDDLHENSFN 195
Query: 312 KVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350
+ +D ML GG RT +++ LA +AG +V
Sbjct: 196 EQFTELDLRMLVF-LGGALRTREKWDGLAASAGLVVEEV 233
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 78.0 bits (192), Expect = 1e-18
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 14 QGSDE--EANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKN 71
+ E +A L + A + M LK A+E+++ II G +S ++ S L +
Sbjct: 1 RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGK--PISLSNLVSILQVPS 58
Query: 72 PDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKNED 121
V R++R LA + E Y L + L + D
Sbjct: 59 SKIGNV-RRLMRYLAHNGFFEIITKE------EESYALTVASELLVRGSD 101
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 48.3 bits (115), Expect = 4e-08
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 16/98 (16%)
Query: 22 LLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRI 81
L + + PMV+++A L L++ I + K +A++ T+ L R+
Sbjct: 3 LRTLIRLGSLHTPMVVRTAATLRLVDHIL----AGARTVKALAARTDTR----PEALLRL 54
Query: 82 LRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTKN 119
+R L + +L + V + L +
Sbjct: 55 IRHLVAIGLLEE--------DAPGEFVPTEVGELLADD 84
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 45.9 bits (109), Expect = 2e-07
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAH 75
+D++ ++L ++ V PM L+ A L L++ + AG + +A + T +P A
Sbjct: 4 TDQDLDVL-LKNLGNLVTPMALRVAATLRLVDHLL-AGA---DTLAGLADRTDT-HPQA- 56
Query: 76 TVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117
L R++R L VL K R + L
Sbjct: 57 --LSRLVRHLTVVGVLEG------GEKQGRPLRPTRLGMLLA 90
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 45.4 bits (106), Expect = 3e-06
Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 11/148 (7%)
Query: 205 VVDVGGGIGATLNMIISKYPSIKGINFD---LPHVIQDAPAFPGVEHVGGDMFVSVPKGD 261
V+DV G G N + + L +
Sbjct: 19 VLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 78
Query: 262 AIFIKWICHDWSDEHC---VKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD 318
+ + H F+ Y L G++++ + P+ +V+
Sbjct: 79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD---NSAPENDAFDVFYNYVE 135
Query: 319 CIMLAHNPGGKERTEQEFRALAKAAGFQ 346
+ + ++ + + AGF+
Sbjct: 136 --KERDYSHHRAWKKSDWLKMLEEAGFE 161
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 11/152 (7%)
Query: 205 VVDVGGGIGATLNMIISKYPSIKGI--NFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDA 262
V+D+G G G T G+ ++ V GVE+V +
Sbjct: 20 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79
Query: 263 IFIKWICHDWSDEHCV----KFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVD 318
I H K ++ L +G+ ++ + P+ + + V H++
Sbjct: 80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD---HYAPEDPVLDEFVNHLN 136
Query: 319 CIMLAHNPGGKERTEQEFRALAKAAGFQGFQV 350
L +E + E++A+ A +
Sbjct: 137 --RLRDPSHVRESSLSEWQAMFSANQLAYQDI 166
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 18/164 (10%), Positives = 38/164 (23%), Gaps = 9/164 (5%)
Query: 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHV 249
++ + F +++++G G + + + I + + + +
Sbjct: 9 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCV--EASEEAISHAQGRLKDGI 66
Query: 250 GGDMFVSVPKGDAIFIKWICHDWSDEHC---VKFLKNCYEALPVNGKVIVAESILPVTPD 306
I EH V LK + G +
Sbjct: 67 TYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 126
Query: 307 TSLASKVVIHVDCIMLAHNPGGKER----TEQEFRALAKAAGFQ 346
+A K+ I + A AG Q
Sbjct: 127 RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ 170
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 15/154 (9%)
Query: 205 VVDVGGGIGATLNMIISKYP-SIKGINFDLPHVI------QDAPAFPGVEHVGGDMFVSV 257
++D+G G G L + + GI+ ++ V + D V
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 258 PKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHV 317
+ W + ++L G +++ E P T ++
Sbjct: 97 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ----- 151
Query: 318 DCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351
+ T G+ ++V
Sbjct: 152 ---ACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV 182
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 36.6 bits (84), Expect = 0.003
Identities = 11/101 (10%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 204 SVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFVSVP 258
++ +G G T + + + P ++++ + + GD
Sbjct: 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE 136
Query: 259 KGDAIFIKWICHDWSDEHCVK--FLKNCYEALPVNGKVIVA 297
+ + + ++ + +KN L G ++A
Sbjct: 137 YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 36.5 bits (83), Expect = 0.003
Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 24/197 (12%)
Query: 159 YGMNAFDYHGKDLRFNKIFNNGMSSHSTITMK--KILENYKGFEGLNSVVDVGGGIGATL 216
YG + + + GM + ++ + G + +D G GIG
Sbjct: 50 YGKALEYWRTVPATVSGVLG-GMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRIT 108
Query: 217 NMIISKYPSIKGINFDLPHVIQDAPA-----FPGVEHVGGDMFVSVPKG--DAIFIKWIC 269
+++K + + + H++++A G + ++P D I I+W
Sbjct: 109 KNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTA 168
Query: 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329
+D VKF K+C +AL NG + E+ D ++
Sbjct: 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG--------------DRFLVDKEDSSL 214
Query: 330 ERTEQEFRALAKAAGFQ 346
R++ ++ L +G +
Sbjct: 215 TRSDIHYKRLFNESGVR 231
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.8 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.78 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.77 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.76 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.74 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.73 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.71 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.69 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.66 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.66 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.64 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.63 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.61 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.61 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.58 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.56 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.55 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.54 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.53 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.53 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.5 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.5 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.49 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.47 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.47 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.44 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.42 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.42 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.41 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.34 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.32 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.31 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.28 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.26 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.25 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.24 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.23 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.22 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.21 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.19 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.18 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.12 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.03 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.92 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.92 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.91 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.87 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.86 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.73 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.71 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.7 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.59 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.48 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.41 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.4 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.24 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.24 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.23 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.17 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.16 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.13 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.09 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.05 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.03 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.0 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.0 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.0 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.97 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.96 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.94 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.9 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.87 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.85 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.83 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.8 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.79 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.71 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.67 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.59 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.58 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.55 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.52 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.51 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.47 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.45 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.19 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.97 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.89 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.67 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.59 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.51 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.46 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 96.4 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.36 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.34 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.32 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 96.2 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 96.05 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 95.42 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 95.36 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 95.16 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 95.08 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 95.06 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.92 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 94.8 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 94.72 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 94.72 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 94.67 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.47 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 94.4 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 94.12 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.07 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 93.92 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 93.81 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 93.68 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 93.67 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 93.52 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.42 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 93.39 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 93.38 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.22 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 93.05 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.03 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.69 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.58 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 92.4 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 92.39 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.34 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 92.32 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 92.29 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 92.27 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 92.15 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 92.12 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.07 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 92.0 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 91.36 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 91.01 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.77 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 90.71 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 90.67 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 90.61 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.53 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 90.38 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.02 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.93 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 89.91 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 89.86 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 89.84 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 89.49 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 89.4 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.83 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 88.82 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 88.75 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 88.7 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 88.13 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 88.04 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.73 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 87.71 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 87.68 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 87.47 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 87.36 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 86.79 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 86.75 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 86.51 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 86.29 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 86.05 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 85.1 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.7 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 83.5 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 83.41 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 81.28 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 80.64 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 80.03 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.3e-44 Score=316.52 Aligned_cols=241 Identities=48% Similarity=0.860 Sum_probs=209.2
Q ss_pred CChhHHHHhhcChhHHHhhhhhHHHHhcCC-chhHhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCC
Q 017777 123 VTLSDLCLMNQDKVLMESWYYLKDAVLEGG-IPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEG 201 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 201 (366)
.|+++++.+++.|.++++|.+|.++++++. ++|+..+|.++|+|+.++|+..+.|+.+|.+.+....+.+++.++.+++
T Consensus 2 g~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~ 81 (244)
T d1fp1d2 2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG 81 (244)
T ss_dssp CCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred ccHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 378999999999999999999999999866 5799999999999999999999999999999988888899999986788
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHH
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L 281 (366)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|+++++..+|
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL 161 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL 161 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence 99999999999999999999999999999999999998888899999999999999888999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC-CCceeEE
Q 017777 282 KNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS-AFNTYIM 360 (366)
Q Consensus 282 ~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi 360 (366)
++++++|+|||+|+|+|.+.++.+...........+++.|+... +|++||.+||.++|++|||+.+++++. .+..+||
T Consensus 162 ~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~vi 240 (244)
T d1fp1d2 162 SNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 240 (244)
T ss_dssp HHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEE
T ss_pred HHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEE
Confidence 99999999999999999998876655544445667788888764 899999999999999999999998755 5888999
Q ss_pred EEEe
Q 017777 361 EFLK 364 (366)
Q Consensus 361 e~~k 364 (366)
|++|
T Consensus 241 E~~K 244 (244)
T d1fp1d2 241 EFYK 244 (244)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.2e-42 Score=307.57 Aligned_cols=241 Identities=80% Similarity=1.350 Sum_probs=220.1
Q ss_pred CChhHHHHhhcChhHHHhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCC
Q 017777 123 VTLSDLCLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGL 202 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 202 (366)
.++++++.+.+++.+++.|.+|.+++|+|+++|+..+|.++|+|+.++|+..+.|.++|...+....+.++..++.+++.
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~ 82 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 82 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence 46889998888888899999999999999999999999999999999999999999999998888888899988844667
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHH
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLK 282 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~ 282 (366)
.+|||||||+|.++..+++++|+++++++|+|++++.++..+|++++.+|+++++|.+|++++.+++|+|+++++..+|+
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~ 162 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 162 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999888999999999999999889999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeEEEE
Q 017777 283 NCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEF 362 (366)
Q Consensus 283 ~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~ 362 (366)
+++++|+|||+++|+|.+.++.............+++.|+.++.+|++||.+||+++|++|||+.+++++.....+|||+
T Consensus 163 ~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~ 242 (243)
T d1kyza2 163 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242 (243)
T ss_dssp HHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred HHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence 99999999999999999887665544444445577888887766899999999999999999999999998899999996
Q ss_pred E
Q 017777 363 L 363 (366)
Q Consensus 363 ~ 363 (366)
.
T Consensus 243 ~ 243 (243)
T d1kyza2 243 L 243 (243)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=7.9e-41 Score=295.01 Aligned_cols=239 Identities=32% Similarity=0.570 Sum_probs=210.9
Q ss_pred ChhHHHHhhcChhHHHhhhhhHHHHhcCC-chhHhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCC
Q 017777 124 TLSDLCLMNQDKVLMESWYYLKDAVLEGG-IPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGL 202 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 202 (366)
++.+++.+..+|.++.+|..|.+.++++. ++|+.++|.++|+|+.++|+..+.|+++|...+......+......+++.
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~ 81 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL 81 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence 46677888888999999999999999975 58999999999999999999999999999988776655555432226788
Q ss_pred CeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHHHH
Q 017777 203 NSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKFLK 282 (366)
Q Consensus 203 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~ 282 (366)
.+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|++++++++|+
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~ 161 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILK 161 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHH
Confidence 89999999999999999999999999999999999999888999999999999888779999999999999999999999
Q ss_pred HHHHhCCCC---cEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECCCceeE
Q 017777 283 NCYEALPVN---GKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSAFNTYI 359 (366)
Q Consensus 283 ~~~~~L~pg---G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 359 (366)
+++++|+|| |+++|+|.+.++.............+++.|+.. +|++||.+||+++|++|||+.+++++.++..++
T Consensus 162 ~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~--~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~sv 239 (244)
T d1fp2a2 162 KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239 (244)
T ss_dssp HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGG--TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred HHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhC--CCcCCCHHHHHHHHHHcCCceEEEEECCCCeEE
Confidence 999999998 899999999887655543333445667777653 799999999999999999999999999999999
Q ss_pred EEEEe
Q 017777 360 MEFLK 364 (366)
Q Consensus 360 ie~~k 364 (366)
||+|+
T Consensus 240 IE~~p 244 (244)
T d1fp2a2 240 IEIYP 244 (244)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=1.9e-38 Score=282.78 Aligned_cols=238 Identities=24% Similarity=0.377 Sum_probs=203.3
Q ss_pred CChhHHHHhhcChhHH-HhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCC
Q 017777 123 VTLSDLCLMNQDKVLM-ESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEG 201 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 201 (366)
.++++++.+....... .+|.+|.+++|+|.++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++.++ +++
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~ 81 (256)
T d1qzza2 3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA 81 (256)
T ss_dssp TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence 5678887765333233 37999999999999999999999999999999999999999999988888889999998 999
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCCCCCCCC-CEEEeccccccCC
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMFVSVPKG-DAIFIKWICHDWS 273 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~~~~~~-D~i~~~~~lh~~~ 273 (366)
..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+++.++.+|+++++|.+ |+|++.++||+|+
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~ 161 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS 161 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccC
Confidence 99999999999999999999999999999999888876653 278999999999888765 9999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 274 DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 274 ~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
++++.++|++++++|||||+++|+|.+.+++... .+.....+++.|+... +|+.||.+||+++|++|||+++++++.
T Consensus 162 d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~~ 238 (256)
T d1qzza2 162 DEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTS 238 (256)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEEe
Confidence 9999999999999999999999999876544322 2234456788888775 899999999999999999999999876
Q ss_pred C-----CceeEEEEEe
Q 017777 354 A-----FNTYIMEFLK 364 (366)
Q Consensus 354 ~-----~~~~vie~~k 364 (366)
+ ..++|+|+..
T Consensus 239 ~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 239 GSTTLPFDFSILEFTA 254 (256)
T ss_dssp CCSSCSSCEEEEEEEE
T ss_pred CCcCccCceEEEEEEe
Confidence 4 3669999875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=3.3e-36 Score=268.20 Aligned_cols=211 Identities=24% Similarity=0.418 Sum_probs=186.4
Q ss_pred HhhhhhHHHHhcCCchhHhhhCCCchhhcccCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHH
Q 017777 139 ESWYYLKDAVLEGGIPFNKAYGMNAFDYHGKDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNM 218 (366)
Q Consensus 139 ~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~ 218 (366)
.+|.+|.+++|+|.++|+..+|.++|+|+.++|+..+.|..+|........+.+++.++ +++..+|||||||+|.++..
T Consensus 19 ~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~ 97 (253)
T d1tw3a2 19 ISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAA 97 (253)
T ss_dssp GGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHH
T ss_pred ccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHH
Confidence 47999999999999999999999999999999999999999999988888889999998 99999999999999999999
Q ss_pred HHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCCCCCCCC-CEEEeccccccCChHHHHHHHHHHHHhCCC
Q 017777 219 IISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMFVSVPKG-DAIFIKWICHDWSDEHCVKFLKNCYEALPV 290 (366)
Q Consensus 219 l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~~~~~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 290 (366)
+++++|+++++++|+|++++.+++ .++++++.+|++++.|.. |+|+++++||+|+++++.++|++++++|||
T Consensus 98 la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkP 177 (253)
T d1tw3a2 98 IARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP 177 (253)
T ss_dssp HHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE
T ss_pred HHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCC
Confidence 999999999999999888776653 268999999999876655 999999999999999999999999999999
Q ss_pred CcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 291 NGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 291 gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
||+|+|.|.......... .....+++.|+... +|+.||.+||.++|++|||++++++.++
T Consensus 178 GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~ 237 (253)
T d1tw3a2 178 GGRILIHERDDLHENSFN---EQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLP 237 (253)
T ss_dssp EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECC
Confidence 999999998665432221 23345677777764 8999999999999999999998887653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=1.4e-20 Score=163.48 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=120.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHh--CCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCCCCCEEEecc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISK--YPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVPKGDAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~ 267 (366)
..+..+|||||||+|..+..|++. .|+.+++++|+ +.|++.|++. .++++...|+.+ +.+..|++++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 356789999999999999999986 48899999998 9999888642 467778888876 444559999999
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhC---------------CCCccCC
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHN---------------PGGKERT 332 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~t 332 (366)
++|+++.++..++|++++++|||||.+++.|...+..+.... ........+.... ..-..++
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 193 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH---LLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS 193 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHH---HHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhh---HHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence 999999888889999999999999999999987665422110 0000000000000 0012468
Q ss_pred HHHHHHHHHHcCCceeEEEECCCceeEEEEEe
Q 017777 333 EQEFRALAKAAGFQGFQVVSSAFNTYIMEFLK 364 (366)
Q Consensus 333 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k 364 (366)
.+++.++|+++||+.++++.....+..+.++|
T Consensus 194 ~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 194 IETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 89999999999999998875555565666665
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.80 E-value=1.2e-19 Score=157.73 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=115.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~~ 260 (366)
+..+++..+ +.++.+|||||||+|.++..+++.. .+++++|+ +.+++.|++ .++++++++|+.+ +++.+
T Consensus 4 ~~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 4 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 345676666 8889999999999999999999875 47899998 888877643 3789999999987 77654
Q ss_pred --CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhh-CCCCccCCHHHHH
Q 017777 261 --DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAH-NPGGKERTEQEFR 337 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~ 337 (366)
|+|++.+++||+++.+ .+|++++++|||||++++.+...+.... .....+...... ......++.++|.
T Consensus 81 ~fD~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKSDWL 152 (231)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred ccccccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHHHHH
Confidence 9999999999998765 7899999999999999999876654311 111111111111 1234567899999
Q ss_pred HHHHHcCCceeEEEE
Q 017777 338 ALAKAAGFQGFQVVS 352 (366)
Q Consensus 338 ~ll~~aGf~~~~~~~ 352 (366)
++|+++||+++++..
T Consensus 153 ~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 153 KMLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHHTCEEEEEEE
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999999876654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=3.1e-19 Score=160.14 Aligned_cols=164 Identities=14% Similarity=0.189 Sum_probs=122.0
Q ss_pred HHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEE
Q 017777 178 NNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHV 249 (366)
Q Consensus 178 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~ 249 (366)
..++..........+....+ +++..+|||||||+|.++..|++++ +.+++++|+ +.+++.+++. ++++++
T Consensus 45 ~~a~~~~~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~ 122 (282)
T d2o57a1 45 REASLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVK 122 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccc
Confidence 33333333334455555555 7888999999999999999999875 578999998 8887776642 689999
Q ss_pred EccCCC-CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCC
Q 017777 250 GGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNP 326 (366)
Q Consensus 250 ~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
++|+.+ +++.+ |+|++..++||+++.+ .+|++++++|||||++++.+....+....... ....+ ...
T Consensus 123 ~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~---~~~-- 192 (282)
T d2o57a1 123 YGSFLEIPCEDNSYDFIWSQDAFLHSPDKL--KVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPILD---RIK-- 192 (282)
T ss_dssp ECCTTSCSSCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHHHH---HHT--
T ss_pred ccccccccccccccchhhccchhhhccCHH--HHHHHHHHhcCCCcEEEEEEeecCCCCchhHH---HHHHH---Hhc--
Confidence 999988 77754 9999999999998764 78999999999999999998876654222111 11111 111
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEEEC
Q 017777 327 GGKERTEQEFRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 327 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 353 (366)
.....+.++|.++++++||+.+.+...
T Consensus 193 ~~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 193 LHDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp CSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 223457899999999999998887764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.78 E-value=2.4e-19 Score=158.12 Aligned_cols=148 Identities=22% Similarity=0.360 Sum_probs=116.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCC--C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKG--D 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~--D 261 (366)
..+++.++ ..+..+|||||||+|.++..|+..+.+ +++++|. +.+++.|++ .+++++.++|+.+ +++.. |
T Consensus 83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 45666666 567889999999999999998877654 7889997 888887764 2568999999877 55433 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHH
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAK 341 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 341 (366)
+|++..++||+++++...+|++++++|+|||+++|.+........ ..+. ..+...|+.++|+++|+
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~~~l~~ 226 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHHHHHHH
Confidence 999999999999999899999999999999999999876644311 1110 12344578999999999
Q ss_pred HcCCceeEEEEC
Q 017777 342 AAGFQGFQVVSS 353 (366)
Q Consensus 342 ~aGf~~~~~~~~ 353 (366)
++||++++....
T Consensus 227 ~aGf~ii~~~~q 238 (254)
T d1xtpa_ 227 ESGVRVVKEAFQ 238 (254)
T ss_dssp HHTCCEEEEEEC
T ss_pred HcCCEEEEEEee
Confidence 999999877653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.1e-19 Score=154.47 Aligned_cols=139 Identities=18% Similarity=0.280 Sum_probs=112.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--CEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG--DAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~~ 268 (366)
..+..+|||||||+|.++..++...+. +++++|+ +.+++.|++. .+++|+++|+.+ +++.. |+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999998876654 7999998 8888877642 467999999987 55433 99999999
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
+||+++++..++|++++++|+|||.+++.+....+.. .++. ......++.++|.++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV----------ILDD-----VDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE----------EEET-----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc----------cccc-----CCceeeCCHHHHHHHHHHcCCEEE
Confidence 9999998888999999999999999999998765431 0100 113445789999999999999998
Q ss_pred EEEEC
Q 017777 349 QVVSS 353 (366)
Q Consensus 349 ~~~~~ 353 (366)
+....
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87764
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=2.1e-18 Score=150.30 Aligned_cols=151 Identities=19% Similarity=0.304 Sum_probs=115.3
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCC-CCCCC--
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFV-SVPKG-- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-- 260 (366)
-+++..+ +++..+|||||||+|.++..+++.. .+++++|+ +.+++.|++. +++.++++|+.+ +++.+
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 3556666 8899999999999999999999876 47899998 7888777542 679999999988 77755
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchh-hHhhCCCCccCCHHHHHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCI-MLAHNPGGKERTEQEFRAL 339 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~e~~~l 339 (366)
|+|++.+++|++++. ..+|++++++|||||++++.+...+..+ ... ..++.. ........+.++..+|..+
T Consensus 84 D~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 84 DIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VLD---EFVNHLNRLRDPSHVRESSLSEWQAM 155 (234)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HHH---HHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred ceeeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCH---HHH---HHHHHHHhhCCCcccccCCHHHHHHH
Confidence 999999999999875 4889999999999999999987655431 111 111111 1111124566789999999
Q ss_pred HHHcCCceeEEEE
Q 017777 340 AKAAGFQGFQVVS 352 (366)
Q Consensus 340 l~~aGf~~~~~~~ 352 (366)
++++||.+..+..
T Consensus 156 ~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 156 FSANQLAYQDIQK 168 (234)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCceeEEEE
Confidence 9999998765543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=5.4e-18 Score=148.73 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=116.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~ 260 (366)
+..+...+. +.+..+|||||||+|..+..++++++ ++++++|+ +.+++.+++. ++++++.+|+.+..+..
T Consensus 22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 445666666 88889999999999999999998775 79999998 8888766542 57999999998744433
Q ss_pred --CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHH
Q 017777 261 --DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRA 338 (366)
Q Consensus 261 --D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 338 (366)
|+|++..++|++++.+ .+|++++++|||||++++.+......+...... .... . .......+..++..
T Consensus 100 ~fD~v~~~~~~~~~~d~~--~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~---~~~~---~--~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIA---QACG---V--SSTSDFLTLPGLVG 169 (245)
T ss_dssp CEEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHH---HTTT---C--SCGGGSCCHHHHHH
T ss_pred ceeEEEEEehhhccCCHH--HHHHHHHHHcCcCcEEEEEeccccCCCChHHHH---HHhc---c--CCCcccCCHHHHHH
Confidence 9999999999998754 789999999999999999987655432221110 0100 0 11223468899999
Q ss_pred HHHHcCCceeEEEEC
Q 017777 339 LAKAAGFQGFQVVSS 353 (366)
Q Consensus 339 ll~~aGf~~~~~~~~ 353 (366)
+++++||+++.....
T Consensus 170 ~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 170 AFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHcCCEEEEEEeC
Confidence 999999998876554
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=8.7e-18 Score=143.59 Aligned_cols=137 Identities=19% Similarity=0.147 Sum_probs=101.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEeccccccCChHH
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEH 276 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~ 276 (366)
+..+|||||||+|.++..+. +.+++|+ +.+++.+++ .++.++++|+.+ +++.. |+|++.++|||+++.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~- 107 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 107 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc-
Confidence 35689999999999988773 3578998 888888775 379999999987 66644 999999999999875
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 277 CVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 277 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
.++|++++++|+|||++++.+...... .... ...+........+...+|.++|.++|+++||+++++..
T Consensus 108 -~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 -ERALKEAYRILKKGGYLIVGIVDRESF-----LGRE-YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHH-HHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -ccchhhhhhcCCCCceEEEEecCCcch-----hHHh-hhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 478999999999999999988644321 0000 00010001111234567999999999999999887654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=3e-17 Score=146.28 Aligned_cols=163 Identities=17% Similarity=0.242 Sum_probs=121.2
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~~ 260 (366)
.+.+++.+. +.++.+|||||||.|.++..+++.++ ++++++|+ ++.++.+++ ..++.+...|..+.....
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 456788887 88899999999999999999888764 69999998 666665543 146777777765432345
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCC----C-chhhhhhhhcchhhHhhCCCCccCCHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPD----T-SLASKVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
|.|++..+++|++++....+|++++++|||||+++|.+.+..+... . ..........++...-..++|..++.++
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~ 198 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 198 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHh
Confidence 9999999999999887789999999999999999998765543210 0 0000111122333333347889999999
Q ss_pred HHHHHHHcCCceeEEEEC
Q 017777 336 FRALAKAAGFQGFQVVSS 353 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~ 353 (366)
+.+.++++||++..+...
T Consensus 199 l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 199 MVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHHHHHTTCBCCCCEEC
T ss_pred hhhhHHhhccccceeeec
Confidence 999999999999887765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=1.6e-16 Score=141.57 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=122.8
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~~ 260 (366)
.+.+++.+. +.++.+|||||||.|.++..+++.+ +++++++++ +..++.+++ .+++++...|+.+.....
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 456777777 8899999999999999999999998 589999997 554544432 278999999976422235
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC-----CCCchhhhhhhhcchhhHhhCCCCccCCHHH
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT-----PDTSLASKVVIHVDCIMLAHNPGGKERTEQE 335 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 335 (366)
|.|++..++.|+.......++++++++|||||++++.+.+...+ +..+.........++..--.+++|..++.++
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~ 208 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 208 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence 99999999998887766789999999999999999988764321 1111111111222333333347899999999
Q ss_pred HHHHHHHcCCceeEEEECC
Q 017777 336 FRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 336 ~~~ll~~aGf~~~~~~~~~ 354 (366)
+..+++++||++.++..++
T Consensus 209 ~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 209 VQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHhchhhcccccch
Confidence 9999999999999887763
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=2.8e-16 Score=140.33 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=121.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCCC
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPKG 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~~ 260 (366)
.+.+++.+. +.++.+|||||||.|.++..++++++ ++++++++ ++.++.+++ ..++.+...|+..+-...
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 556788887 88999999999999999999999885 69999997 555444432 257888888864332345
Q ss_pred CEEEeccccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCc-----hhhhhhhhcchhhHhhCCCC
Q 017777 261 DAIFIKWICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTS-----LASKVVIHVDCIMLAHNPGG 328 (366)
Q Consensus 261 D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 328 (366)
|.|++..++.|+++ +....++++++++|||||++++...+.++..... .........++......++|
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg 207 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 207 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence 99999999988875 3467899999999999999999887765431000 00011112223222234789
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEECC
Q 017777 329 KERTEQEFRALAKAAGFQGFQVVSSA 354 (366)
Q Consensus 329 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 354 (366)
...+.+++..+++++||++......+
T Consensus 208 ~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCHHHHHhhhcccccccceeeecc
Confidence 99999999999999999998887764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.66 E-value=1.3e-16 Score=142.69 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=109.9
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~- 260 (366)
+.+++.+..+.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ ++++.
T Consensus 16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~f 95 (281)
T d2gh1a1 16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 95 (281)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCc
Confidence 344454433667899999999999999999998874 78999998 8888877642 368899999987 55554
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCC-------CCC-chhhhhhhhcchhhHhhCCCCcc-C
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVT-------PDT-SLASKVVIHVDCIMLAHNPGGKE-R 331 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 331 (366)
|+|++.+++||+++++ .+|++++++|||||++++.|+..... ... ........+...........+.. .
T Consensus 96 D~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (281)
T d2gh1a1 96 DIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173 (281)
T ss_dssp EEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTT
T ss_pred eEEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999998765 78999999999999999988532110 000 00000011111111110012221 2
Q ss_pred CHHHHHHHHHHcCCceeEEEE
Q 017777 332 TEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 332 t~~e~~~ll~~aGf~~~~~~~ 352 (366)
...++..+|+++||+.+++..
T Consensus 174 i~~~l~~~l~eaGf~~i~~~~ 194 (281)
T d2gh1a1 174 IGMKIPIYLSELGVKNIECRV 194 (281)
T ss_dssp GGGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEE
Confidence 224678899999999987654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=3.5e-16 Score=132.47 Aligned_cols=148 Identities=13% Similarity=0.073 Sum_probs=105.8
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CCCCC-CEEEecccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SVPKG-DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~~-D~i~~~~~l 269 (366)
+..+.+|||||||+|..+..++++. .+++++|+ +.+++.+++ .+++++...|+.+ +.+.. |+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 4456799999999999999999964 57899998 777776543 2678999999887 44443 999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeE
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 349 (366)
|++++++..++|++++++|+|||++++........... .. ......+..++.+++ +||+++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~--------~~--------~~~~~~~~~el~~~~--~~~~i~~ 167 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPC--------TV--------GFPFAFKEGELRRYY--EGWDMLK 167 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-------------------------CCCCBCTTHHHHHT--TTSEEEE
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCC--------CC--------CCCCccCHHHHHHHh--CCCeEEE
Confidence 99998888899999999999999999987654321100 00 011223455677777 4777664
Q ss_pred EEEC--------------CCceeEEEEEecC
Q 017777 350 VVSS--------------AFNTYIMEFLKSA 366 (366)
Q Consensus 350 ~~~~--------------~~~~~vie~~k~~ 366 (366)
.... ...++.+.++|.|
T Consensus 168 ~~e~~~~~~~~~~~~~~~~~~~~~~varK~a 198 (198)
T d2i6ga1 168 YNEDVGELHRTDENGNRIKLRFATMLARKTA 198 (198)
T ss_dssp EEEEECCC------------EEEEEEEECCC
T ss_pred eeeccceeeecCCCCcEeeEEEEEEEEEeCC
Confidence 3321 1235678888887
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=5.1e-16 Score=136.21 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=87.2
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D 261 (366)
..+...+. ..+..+|||||||+|..+..+++. +.+++++|+ +.+++.|++. .++++.++|+.+ +++.. |
T Consensus 31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD 107 (251)
T d1wzna1 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (251)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcccccccc
Confidence 34555555 566789999999999999999985 458999998 8899887653 479999999987 66654 9
Q ss_pred EEEec-cccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 262 AIFIK-WICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 262 ~i~~~-~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
+|++. +++|+++.++..++|++++++|||||++++..
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99885 68888887888899999999999999998843
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.63 E-value=9.7e-17 Score=119.26 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=81.4
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
+..++...+++++++|+.+++|++|+++||||.|.+.+ +|+|++|||+++++ ++.+.+.+.|+||+|++.|++.++.
T Consensus 5 e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~--~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~ 81 (101)
T d1fp2a1 5 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT 81 (101)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcC--CCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeec
Confidence 45678889999999999999999999999999998754 69999999999998 3224567999999999999997641
Q ss_pred ccCCCCccccccccchhchhhhcCC
Q 017777 96 RNLPDGKVERLYGLAPVCKFLTKNE 120 (366)
Q Consensus 96 ~~~~~g~~~~~y~~t~~~~~l~~~~ 120 (366)
.+ +++|++|+.++.|+++.
T Consensus 82 ---~~---~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 82 ---KE---EESYALTVASELLVRGS 100 (101)
T ss_dssp ---SS---SEEEEECHHHHTTSTTS
T ss_pred ---CC---CCeEecCHHHHHhhcCC
Confidence 12 57899999999888653
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.62 E-value=4.8e-16 Score=115.57 Aligned_cols=104 Identities=74% Similarity=1.074 Sum_probs=88.3
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSL 95 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 95 (366)
++++..-..++++++++..++|++|++|||||.|.+.|.++++|..|||.++..++|..+..+.|+||+|++.|++.++.
T Consensus 3 ~dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~ 82 (107)
T d1kyza1 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSV 82 (107)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEee
Confidence 56777778899999999999999999999999999876567899999999999977766778999999999999998653
Q ss_pred ccCCCCccccccccchhchhhhcC
Q 017777 96 RNLPDGKVERLYGLAPVCKFLTKN 119 (366)
Q Consensus 96 ~~~~~g~~~~~y~~t~~~~~l~~~ 119 (366)
...+||..+..|.+|+.+++|+++
T Consensus 83 ~~~~dg~~~~~Y~LTpvsk~Lv~d 106 (107)
T d1kyza1 83 RTQQDGKVQRLYGLATVAKYLVKN 106 (107)
T ss_dssp EECTTSCEEEEEEECHHHHHHSCC
T ss_pred ecCCCCCeeeEEecchhHHhhcCC
Confidence 333444334589999999999875
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=6.4e-16 Score=133.08 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=87.6
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC--C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG--D 261 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D 261 (366)
.++..+ +++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..+.++++|+.+ +++.. |
T Consensus 29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD 104 (226)
T d1ve3a1 29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFD 104 (226)
T ss_dssp HHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEE
T ss_pred HHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCce
Confidence 344443 346689999999999999999984 568999998 8888877642 568899999887 66644 9
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+|++.+++|++++.+..++|+++.++|||||++++...
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 99999999999988888999999999999999998765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.61 E-value=9.3e-16 Score=132.47 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=103.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--CCceEEEccCCC-CCCCC-CEEEeccccccCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--PGVEHVGGDMFV-SVPKG-DAIFIKWICHDWS 273 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~-D~i~~~~~lh~~~ 273 (366)
+.++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++.++.+|+.+ +.++. |+|++.++|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 3456789999999999999998865 46999998 8888887643 579999999876 44444 9999999999998
Q ss_pred hHHHHHHHHHHH-HhCCCCcEEEEEccccCCCCCCch----hhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 274 DEHCVKFLKNCY-EALPVNGKVIVAESILPVTPDTSL----ASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 274 ~~~~~~~L~~~~-~~L~pgG~lli~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
++. .+|++++ ++|+|||.+++.-+-......... .........-.-.. ....+.++.++++++++++||+++
T Consensus 96 d~~--~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~l~~~l~~~Gf~i~ 172 (225)
T d2p7ia1 96 DPV--ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA-HGHRCTYALDTLERDASRAGLQVT 172 (225)
T ss_dssp SHH--HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred CHH--HHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccc-eeeeeccCHHHHHHHHHHCCCEEE
Confidence 764 7799998 789999999997542211000000 00000000000000 124456799999999999999987
Q ss_pred EEE
Q 017777 349 QVV 351 (366)
Q Consensus 349 ~~~ 351 (366)
...
T Consensus 173 ~~~ 175 (225)
T d2p7ia1 173 YRS 175 (225)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=4.4e-15 Score=128.02 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=104.7
Q ss_pred hccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC----CCCCCceEEEccCCCCC--CC--CCEEEe
Q 017777 195 NYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA----PAFPGVEHVGGDMFVSV--PK--GDAIFI 265 (366)
Q Consensus 195 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~~--~~--~D~i~~ 265 (366)
.++ +.++.+|||||||+|..+..+++..|+.+++++|+ |.+++.+ .+.+++..+.+|...+. .. .|++++
T Consensus 69 ~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 69 VMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred hCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence 344 67889999999999999999999999999999998 7776654 34578888888877632 22 278777
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCC
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 345 (366)
.+.+|++++ ...+++++++.|||||++++.......+...++ ....+++.+.|+++||
T Consensus 148 ~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~--------------------~~~~~e~~~~L~~aGF 205 (230)
T d1g8sa_ 148 YEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP--------------------KEIFKEQKEILEAGGF 205 (230)
T ss_dssp EECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH--------------------HHHHHHHHHHHHHHTE
T ss_pred eccccchHH--HHHHHHHHHHhcccCceEEEEeeccccCCCCCH--------------------HHHHHHHHHHHHHcCC
Confidence 778887654 457899999999999999998765544322111 1124678899999999
Q ss_pred ceeEEEECC
Q 017777 346 QGFQVVSSA 354 (366)
Q Consensus 346 ~~~~~~~~~ 354 (366)
++++...+.
T Consensus 206 ~ive~idL~ 214 (230)
T d1g8sa_ 206 KIVDEVDIE 214 (230)
T ss_dssp EEEEEEECT
T ss_pred EEEEEecCC
Confidence 999988874
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.56 E-value=8.4e-15 Score=123.25 Aligned_cols=111 Identities=10% Similarity=0.112 Sum_probs=90.4
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------------------CCceEE
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------------------PGVEHV 249 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~ 249 (366)
+.++...+. ..++.+|||||||+|..+..|+++ +.+++++|+ +.+++.+++. ..+.+.
T Consensus 9 ~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 9 LQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 334555565 778899999999999999999986 679999998 8888777541 346888
Q ss_pred EccCCCCCC----CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 250 GGDMFVSVP----KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 250 ~~D~~~~~~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
++|+++..+ ..|+|++..++|++++++...++++++++|||||++++......
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred cccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 899887322 23999999999999998889999999999999999988766543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.55 E-value=3.5e-15 Score=130.49 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=77.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-CCCCC-CEEEec-ccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV-SVPKG-DAIFIK-WICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~-~~lh~ 271 (366)
.+.+|||||||+|.++..+++.. .+++++|+ +.|++.|++. .+++++++|+.+ +.+.. |+|++. +++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 45789999999999999999875 47899998 8888877642 579999999987 44444 999875 67777
Q ss_pred C-ChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 272 W-SDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 272 ~-~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
+ +.++...+|+++++.|+|||.+++
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 6 455777899999999999999886
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.54 E-value=5.3e-15 Score=107.84 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccccccc
Q 017777 18 EEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRN 97 (366)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 97 (366)
+++.+.+++.+.+++.+++|++|+++||||.|.. ||+|++|||+++++ +++.+.|+|++|++.|+++++
T Consensus 5 d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~----gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~--- 73 (92)
T d1qzza1 5 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG--- 73 (92)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC---
T ss_pred chhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC----CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeee---
Confidence 4788999999999999999999999999999987 69999999999999 999999999999999999974
Q ss_pred CCCCccccccccchhchhhhc
Q 017777 98 LPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 98 ~~~g~~~~~y~~t~~~~~l~~ 118 (366)
+|+ .+.|++|+.+..+.+
T Consensus 74 -~d~--~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 74 -EKQ--GRPLRPTRLGMLLAD 91 (92)
T ss_dssp -CC---CCCCEECTTGGGGST
T ss_pred -cCC--CceecccHHHHhccC
Confidence 332 457888998888764
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.53 E-value=1.2e-14 Score=108.12 Aligned_cols=105 Identities=54% Similarity=0.823 Sum_probs=85.2
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcC-CCCCCCHHHHHhhCCC--CCCCCcchHHHHHHHHhcccccc
Q 017777 16 SDEEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAG-PDAFMSPKDIASQLPT--KNPDAHTVLDRILRLLASYSVLN 92 (366)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~~~t~~ela~~~~~--~~~~~~~~l~~~L~~L~~~g~l~ 92 (366)
++++..-.+++++++++..++|++|++|||||.|...| +++++|..|||.++.+ ++|..+..|.|+||+|++.|++.
T Consensus 2 ~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~ 81 (110)
T d1fp1d1 2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLT 81 (110)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccc
Confidence 56777888999999999999999999999999999865 3466899999999886 23434557999999999999997
Q ss_pred cccccCCCCccccccccchhchhhhcCC
Q 017777 93 CSLRNLPDGKVERLYGLAPVCKFLTKNE 120 (366)
Q Consensus 93 ~~~~~~~~g~~~~~y~~t~~~~~l~~~~ 120 (366)
.......+|..+..|.+|+.+++|++++
T Consensus 82 ~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 82 STTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred cccccCCCCCeeeEEecchhhHhhcCCC
Confidence 6532233443345799999999999765
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.53 E-value=8.1e-15 Score=105.59 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=72.0
Q ss_pred HHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCcc
Q 017777 24 AMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKV 103 (366)
Q Consensus 24 l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~ 103 (366)
.+..+.+++.+++|++|+++||||.|.+ ||+|++|||+++++ ++..+.|+||+|++.|+++++ +
T Consensus 5 ~l~~l~~~~~~~aL~~av~L~ifd~l~~----gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~----~---- 68 (85)
T d1tw3a1 5 TLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED----A---- 68 (85)
T ss_dssp HHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----E----
T ss_pred HHHHHHchHHHHHHHHHHHcCcHHHhcc----CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEec----C----
Confidence 3555578899999999999999999987 69999999999999 999999999999999999863 1
Q ss_pred ccccccchhchhhhcC
Q 017777 104 ERLYGLAPVCKFLTKN 119 (366)
Q Consensus 104 ~~~y~~t~~~~~l~~~ 119 (366)
++.|++|+.++.|.++
T Consensus 69 ~~~y~lt~~s~~L~~D 84 (85)
T d1tw3a1 69 PGEFVPTEVGELLADD 84 (85)
T ss_dssp TTEEEECTTGGGGSTT
T ss_pred CCeEecCHHHHHhhcC
Confidence 5899999999988865
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=1.6e-14 Score=125.75 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=80.2
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCC--CEEEec-cccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKG--DAIFIK-WICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~-~~lh~~~~ 274 (366)
..+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++.....++.+|+.+ +++.+ |+|++. .++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 46679999999999999999874 568999998 8999988865545677888877 67654 999875 68999987
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+ ++|++++++|||||.+++..+
T Consensus 119 ~~--~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 119 KD--KAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HH--HHHHHHHHHEEEEEEEEEEEE
T ss_pred HH--HHHHHHHhhcCcCcEEEEEEC
Confidence 75 689999999999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.6e-14 Score=121.97 Aligned_cols=130 Identities=9% Similarity=-0.077 Sum_probs=100.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------------------CCCceEEEccCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------------------FPGVEHVGGDMF 254 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~ 254 (366)
.....+|||+|||+|..+..|++ .+.+++++|+ +.+++.+++ ..++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~--~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFAD--RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHH--TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 56778999999999999999998 4678999998 777765421 147899999998
Q ss_pred C--CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCcc
Q 017777 255 V--SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKE 330 (366)
Q Consensus 255 ~--~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
+ +.+.+ |+|+...++|+++.++...+++++.++|||||++++.....+..... . .-..
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~-----------------g-pp~~ 182 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-----------------G-PPFY 182 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC-----------------C-SSCC
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC-----------------C-CCCC
Confidence 7 23333 99999999999998888999999999999999998877655432110 0 0012
Q ss_pred CCHHHHHHHHHHcCCceeE
Q 017777 331 RTEQEFRALAKAAGFQGFQ 349 (366)
Q Consensus 331 ~t~~e~~~ll~~aGf~~~~ 349 (366)
.+.+++.++|.. +|.+..
T Consensus 183 ~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 183 VPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp CCHHHHHHHHTT-TEEEEE
T ss_pred CCHHHHHHHhcC-CCEEEE
Confidence 478999999965 676543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.49 E-value=3.8e-14 Score=124.28 Aligned_cols=104 Identities=21% Similarity=0.132 Sum_probs=82.1
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC-CCC-C-C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV-SVP-K-G 260 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~-~-~ 260 (366)
++..+ .++..+|||||||+|..+..+++... .+++++|+ +.+++.|++ ..++.+.++|+.. +.. . .
T Consensus 17 lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~ 93 (252)
T d1ri5a_ 17 LIRLY--TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE 93 (252)
T ss_dssp HHHHH--CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC
T ss_pred HHHHh--CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccccc
Confidence 44444 35678999999999999998888643 37999998 888877753 1468999999976 432 3 2
Q ss_pred -CEEEeccccccC--ChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 261 -DAIFIKWICHDW--SDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 261 -D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|+|++..++|++ +.++...+|++++++|+|||++++..
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 999999999986 34567799999999999999998853
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.5e-15 Score=130.50 Aligned_cols=151 Identities=11% Similarity=-0.001 Sum_probs=100.5
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCc---------------------------
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGV--------------------------- 246 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v--------------------------- 246 (366)
.++.+|||||||+|.++..++... ..+++++|+ +.+++.+++. ..+
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456799999999999876665543 236999998 8888776531 000
Q ss_pred ----eEEEccCCC-----CCCCC--CEEEeccccccCCh--HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhh
Q 017777 247 ----EHVGGDMFV-----SVPKG--DAIFIKWICHDWSD--EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKV 313 (366)
Q Consensus 247 ----~~~~~D~~~-----~~~~~--D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 313 (366)
.....+... +.+.+ |+|++.+++|+++. ++...+++++++.|||||++++.+........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~------- 201 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM------- 201 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-------
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce-------
Confidence 111222221 33333 99999999998753 46678999999999999999998875432100
Q ss_pred hhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEEECC----------CceeEEEEEec
Q 017777 314 VIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVVSSA----------FNTYIMEFLKS 365 (366)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~----------~~~~vie~~k~ 365 (366)
..+. ......++.++|+++|++|||+++++.... .+.-++.++|+
T Consensus 202 --~~~~-----~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 202 --VGKR-----EFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp --ETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred --eccc-----cccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 0000 001234689999999999999988774321 34456677775
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.1e-14 Score=124.91 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=97.3
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh----CCCC--eEEEecc-hhHHhhCCC----C---CCceE--EEc
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISK----YPSI--KGINFDL-PHVIQDAPA----F---PGVEH--VGG 251 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p~~--~~~~~D~-~~~~~~a~~----~---~~v~~--~~~ 251 (366)
.++.++..+...++..+|||||||+|.++..+++. +++. +++++|. +.+++.+++ . ..+.+ ...
T Consensus 27 ~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 106 (280)
T d1jqea_ 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKE 106 (280)
T ss_dssp THHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECS
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhh
Confidence 34455555542344558999999999987776554 5554 5689997 777766543 2 33333 333
Q ss_pred cCC-------CCCCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhH
Q 017777 252 DMF-------VSVPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIML 322 (366)
Q Consensus 252 D~~-------~~~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~ 322 (366)
++. .+.+. .|+|++.++||++++.+ .+|++++++|+|||.|+|.....+. .....+.... ...
T Consensus 107 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~LkpgG~l~i~~~~~~~----~~~~l~~~~~--~~~ 178 (280)
T d1jqea_ 107 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS----GWDKLWKKYG--SRF 178 (280)
T ss_dssp CHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS----HHHHHHHHHG--GGS
T ss_pred hhhhhcchhcccCCCCceeEEEEccceecCCCHH--HHHHHHHhhCCCCCEEEEEEecCcc----hHHHHHHHHH--Hhc
Confidence 221 12222 29999999999998764 7899999999999999997653221 1111000000 111
Q ss_pred hhCCCCccCCHHHHHHHHHHcCCceeEE
Q 017777 323 AHNPGGKERTEQEFRALAKAAGFQGFQV 350 (366)
Q Consensus 323 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 350 (366)
........++.++|.++|.+.||..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 179 PQDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp CCCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred CCCcccccCCHHHHHHHHHHCCCceEEE
Confidence 0011244568899999999999986543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=8.4e-14 Score=121.47 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=100.8
Q ss_pred HHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEE
Q 017777 176 IFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHV 249 (366)
Q Consensus 176 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~ 249 (366)
.|-...+..++..++.+.. + ..++.+|||+|||+|.++..+++. +.+++++|+ +.+++.++++ -++++.
T Consensus 98 aFGTG~H~TT~l~l~~l~~-~--~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~ 172 (254)
T d2nxca1 98 AFGTGHHETTRLALKALAR-H--LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFL 172 (254)
T ss_dssp ----CCSHHHHHHHHHHHH-H--CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred ccCccccchhhHHHHHHHh-h--cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence 3444444444445544443 2 245789999999999999987764 468999998 8888877642 457788
Q ss_pred EccCCCCCC--CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 250 GGDMFVSVP--KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 250 ~~D~~~~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
.+|..+..+ ..|+|+++...+ ....+++.++++|||||++++.+....
T Consensus 173 ~~d~~~~~~~~~fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~~------------------------- 222 (254)
T d2nxca1 173 EGSLEAALPFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGILKD------------------------- 222 (254)
T ss_dssp ESCHHHHGGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEGG-------------------------
T ss_pred eccccccccccccchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecchh-------------------------
Confidence 888766443 349998864443 356789999999999999998654211
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECCCce
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSAFNT 357 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 357 (366)
..+++.+.++++||++++....+...
T Consensus 223 ----~~~~v~~~~~~~Gf~~~~~~~~~~Wv 248 (254)
T d2nxca1 223 ----RAPLVREAMAGAGFRPLEEAAEGEWV 248 (254)
T ss_dssp ----GHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred ----hHHHHHHHHHHCCCEEEEEEEECCEE
Confidence 14678889999999999888765543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.42 E-value=3.2e-13 Score=113.51 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=81.1
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC--------CCCceEEEccCCCCCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA--------FPGVEHVGGDMFVSVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~~~~~~- 260 (366)
-+++.+. ..+..+|||||||+|.++..++...+ +++++|+ +.+++.+++ ..++++..+|.+++.++.
T Consensus 43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 3555565 66788999999999999999998776 5677776 777766653 246899999998855543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
|+|++...+|+. .+....+++++.+.|+|||.+++.
T Consensus 120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEE
Confidence 999998887764 444568999999999999999874
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.1e-13 Score=122.26 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=80.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-CCCceEEEccCCC-CCCCC--CEEEeccccccCCh
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-FPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSD 274 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~ 274 (366)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++++|+.+ +++.+ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4678999999999999999999999999999998 888888764 4799999999988 77654 99999888876
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 275 EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 275 ~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+++++++|||||++++..+
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEE
T ss_pred ------HHHHHHHhCCCcEEEEEee
Confidence 5678999999999999875
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.41 E-value=5.5e-13 Score=113.08 Aligned_cols=102 Identities=12% Similarity=-0.023 Sum_probs=79.2
Q ss_pred ccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC--C-CEEEec
Q 017777 196 YKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK--G-DAIFIK 266 (366)
Q Consensus 196 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~--~-D~i~~~ 266 (366)
++ +.++.+|||||||+|..+..+++..|+.+++++|+ |.+++.+++ .+++.++.+|... +.+. . ++.++.
T Consensus 52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 54 77889999999999999999999999889999998 888876643 4789999999876 2332 1 333333
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+.++++. +...+++++++.|||||++++....
T Consensus 131 ~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 131 QDIAQKN--QIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp ECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ecccChh--hHHHHHHHHHHHhccCCeEEEEEEc
Confidence 4454433 3457899999999999999998753
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.1e-13 Score=119.07 Aligned_cols=138 Identities=12% Similarity=0.015 Sum_probs=93.6
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CC---------------------------
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PG--------------------------- 245 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~--------------------------- 245 (366)
..++.+|||||||+|.+....+..... +++++|. +.+++.+++. ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 345789999999999876544443333 7999998 8887766421 00
Q ss_pred ----ceEEEccCCCC-------CCC--CCEEEeccccccCC--hHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchh
Q 017777 246 ----VEHVGGDMFVS-------VPK--GDAIFIKWICHDWS--DEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLA 310 (366)
Q Consensus 246 ----v~~~~~D~~~~-------~~~--~D~i~~~~~lh~~~--~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~ 310 (366)
......|+..+ .+. .|+|++.++||+.+ .++...+|++++++|||||+|++.+.......
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~----- 205 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY----- 205 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE-----
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc-----
Confidence 12344566541 112 29999999999875 24567999999999999999999887543210
Q ss_pred hhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCceeEEE
Q 017777 311 SKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGFQVV 351 (366)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 351 (366)
...... ......+.+++.++|+++||+++++.
T Consensus 206 -----~~~~~~----~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 206 -----LAGEAR----LTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp -----EETTEE----EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred -----ccCCcc----cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 000000 01123689999999999999987654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.32 E-value=1.6e-12 Score=112.66 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=77.4
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCCCCCC-
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVSVPKG- 260 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~~- 260 (366)
.++..++ +.++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++ ..++++..+|+.+..++.
T Consensus 76 ~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 76 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 4555555 788899999999999999999987 57889999997 777776653 268999999998755543
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|+|++ +++++. .+|+.+.++|||||++++..+
T Consensus 155 fD~V~l-----d~p~p~--~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 155 YDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp EEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeee-----cCCchH--HHHHHHHHhcCCCceEEEEeC
Confidence 98876 344443 679999999999999998644
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.4e-13 Score=117.30 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=78.1
Q ss_pred hcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCC-
Q 017777 183 SHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFV- 255 (366)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~- 255 (366)
++....+..+...+. ..+.+|||||||+|..+..+++..+ .+++++|+ +.+++.+++. .++.++.+|...
T Consensus 37 ~w~~~~~~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 37 RWETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 113 (229)
T ss_dssp GGGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhhc--cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhccccccccccccccc
Confidence 333333444444332 3567999999999999999988655 47899998 8888877542 456777766543
Q ss_pred --CCCCC--CEEE-----eccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 256 --SVPKG--DAIF-----IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 256 --~~~~~--D~i~-----~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+++.+ |.|+ ..+.++++++ ...++++++++|||||++++.+.
T Consensus 114 ~~~~~~~~fD~i~fD~~~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~~~ 164 (229)
T d1zx0a1 114 APTLPDGHFDGILYDTYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNL 164 (229)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccccccccccceeecccccccccccccC--HHHHHHHHHHHcCCCcEEEEEec
Confidence 44433 6665 4666666554 45789999999999999988553
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3.4e-12 Score=115.80 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=88.5
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC---------------CCCceEEEcc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA---------------FPGVEHVGGD 252 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D 252 (366)
...+++.+. +.+..+|||||||+|..+..++..++..+++|+|+ +.+++.+++ ..+++++++|
T Consensus 140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 446777776 88889999999999999999999998888999998 777665532 3579999999
Q ss_pred CCC-CCCC----CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 253 MFV-SVPK----GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 253 ~~~-~~~~----~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
+.+ ++.+ +|+|++.+.+|. ++....|+++.+.|||||++++.+...+.
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f~---~~~~~~l~e~~r~LKpGg~iv~~~~~~~~ 271 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAFG---PEVDHQLKERFANMKEGGRIVSSKPFAPL 271 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTTC---HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred ccccccccccCcceEEEEcceecc---hHHHHHHHHHHHhCCCCcEEEEecccCCC
Confidence 987 5432 388887665543 45568899999999999999998876544
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.28 E-value=2.9e-12 Score=107.93 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=76.8
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC---CCCCC--CEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV---SVPKG--DAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~--D~i~~~~~l 269 (366)
...|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..++.++.+|+.. -++.+ |.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 45799999999999999999999999999997 666655432 3689999999865 25544 888877776
Q ss_pred ccCChHH------HHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSDEH------CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~~------~~~~L~~~~~~L~pgG~lli~e 298 (366)
.++...+ ...+|+.++++|||||.|.|..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6544332 1479999999999999998864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=3.4e-12 Score=114.05 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=73.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC----------CCceEEEccCCC-----CCCCC-C
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF----------PGVEHVGGDMFV-----SVPKG-D 261 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~-----~~~~~-D 261 (366)
..+..+|||||||+|..+..|++. +.+++++|+ +.+++.|++. .+..+...|+.. +.... |
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 345679999999999999999985 578999998 8888877542 234455556543 22233 8
Q ss_pred EEEe-ccccccCCh-----HHHHHHHHHHHHhCCCCcEEEEE
Q 017777 262 AIFI-KWICHDWSD-----EHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 262 ~i~~-~~~lh~~~~-----~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+|++ .++++|+++ ++...+|++++++|||||+|++.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 7776 468887754 46778999999999999998884
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=1.5e-11 Score=105.05 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=97.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCC----CCCCceEEEccCCCC--CC--CC--CEEEec
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAP----AFPGVEHVGGDMFVS--VP--KG--DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~v~~~~~D~~~~--~~--~~--D~i~~~ 266 (366)
+.++.+|||+|||+|..+..+++.. |+-+++++|+ +.+++.++ +..++..+..|...+ .+ .. |+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6788999999999999999999986 7789999997 77766553 346788888887652 11 12 55543
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQ 346 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 346 (366)
.+++.+ +...+++++++.|||||+++|.......+....+ .....+..++ .+.||+
T Consensus 150 -d~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~--------------------~~v~~~v~~l-~~~gf~ 205 (227)
T d1g8aa_ 150 -DVAQPT--QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP--------------------EQVFREVERE-LSEYFE 205 (227)
T ss_dssp -CCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH--------------------HHHHHHHHHH-HHTTSE
T ss_pred -Eccccc--hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH--------------------HHHHHHHHHH-HHcCCE
Confidence 344433 4457899999999999999987543322211100 0012234444 457999
Q ss_pred eeEEEECCC---ceeEEEEEec
Q 017777 347 GFQVVSSAF---NTYIMEFLKS 365 (366)
Q Consensus 347 ~~~~~~~~~---~~~vie~~k~ 365 (366)
+++...+.. .+.++.++|+
T Consensus 206 iie~i~L~p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEECC
T ss_pred EEEEEcCCCCCCceEEEEEEeC
Confidence 999887753 4778888874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=5e-12 Score=110.89 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=100.4
Q ss_pred HHHHhhhcchh----hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCCC-------
Q 017777 177 FNNGMSSHSTI----TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPAF------- 243 (366)
Q Consensus 177 ~~~~m~~~~~~----~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------- 243 (366)
|...|...+.. ....++..++ +.++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|+++
T Consensus 76 ~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~ 154 (266)
T d1o54a_ 76 EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI 154 (266)
T ss_dssp HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG
T ss_pred HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc
Confidence 33445444432 2345677676 8899999999999999999999885 7889999998 8888877652
Q ss_pred CCceEEEccCCCCCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhh
Q 017777 244 PGVEHVGGDMFVSVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIM 321 (366)
Q Consensus 244 ~~v~~~~~D~~~~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 321 (366)
.++.+...|+...++.. |.|+ ++++++. ++|+++.++|||||+|++..+...
T Consensus 155 ~~v~~~~~d~~~~~~~~~~D~V~-----~d~p~p~--~~l~~~~~~LKpGG~lv~~~P~~~------------------- 208 (266)
T d1o54a_ 155 ERVTIKVRDISEGFDEKDVDALF-----LDVPDPW--NYIDKCWEALKGGGRFATVCPTTN------------------- 208 (266)
T ss_dssp GGEEEECCCGGGCCSCCSEEEEE-----ECCSCGG--GTHHHHHHHEEEEEEEEEEESSHH-------------------
T ss_pred cCcEEEeccccccccccceeeeE-----ecCCCHH--HHHHHHHhhcCCCCEEEEEeCccc-------------------
Confidence 56788888876555432 6654 4566654 679999999999999998654211
Q ss_pred HhhCCCCccCCHHHHHHHHHHcCCceeEEEE
Q 017777 322 LAHNPGGKERTEQEFRALAKAAGFQGFQVVS 352 (366)
Q Consensus 322 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 352 (366)
..++..+.+++.||..+++..
T Consensus 209 ----------Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 209 ----------QVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp ----------HHHHHHHHHHHSSEEEEEEEC
T ss_pred ----------HHHHHHHHHHHCCceeEEEEE
Confidence 123456778889998776654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=8.8e-12 Score=108.68 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=90.5
Q ss_pred HHHHhhhcchh----hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC--------
Q 017777 177 FNNGMSSHSTI----TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA-------- 242 (366)
Q Consensus 177 ~~~~m~~~~~~----~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------- 242 (366)
|...|...++. ....++..++ ..++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++
T Consensus 69 ~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~ 147 (264)
T d1i9ga_ 69 YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 147 (264)
T ss_dssp HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS
T ss_pred HHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC
Confidence 44445554443 2445666666 888999999999999999999988 58889999998 888877754
Q ss_pred -CCCceEEEccCCC-CCCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 243 -FPGVEHVGGDMFV-SVPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 243 -~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..++++..+|+.+ ++++. |.|++ +++++. .++..++++|||||++++..+.
T Consensus 148 ~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 148 PPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESS
T ss_pred CCceEEEEecccccccccCCCcceEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEeCc
Confidence 2689999999887 66654 99875 356554 6799999999999999987654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=4.9e-11 Score=104.55 Aligned_cols=134 Identities=18% Similarity=0.135 Sum_probs=100.7
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCCCCC--CCEEEeccccc
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVSVPK--GDAIFIKWICH 270 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~D~i~~~~~lh 270 (366)
..+.+|||+|||+|..+..++..+|+.+++++|+ +.+++.|+++ .+++++.+|++++.+. .|+|+++--.-
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999998 8888877653 5799999999986654 39999863221
Q ss_pred -------------cCCh----------HHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCC
Q 017777 271 -------------DWSD----------EHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPG 327 (366)
Q Consensus 271 -------------~~~~----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
+-|. .....+++.+.+.|+|||.+++ |.- .
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig-~------------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHG-W------------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECC-S-------------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EEC-c-------------------------
Confidence 1010 2245789999999999999888 210 0
Q ss_pred CccCCHHHHHHHHHHcCCceeEEEECC-CceeEEEEE
Q 017777 328 GKERTEQEFRALAKAAGFQGFQVVSSA-FNTYIMEFL 363 (366)
Q Consensus 328 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~ 363 (366)
...+.+.+++++.||..++++..- +.-.++.++
T Consensus 240 ---~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 240 ---QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp ---SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ---hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 114567889999999988776653 444566554
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.21 E-value=2.6e-11 Score=102.00 Aligned_cols=96 Identities=25% Similarity=0.399 Sum_probs=73.6
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC---CCCCC--CEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV---SVPKG--DAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~--D~i~~~~~l 269 (366)
...|||||||+|.++..+++.+|+..++++|+ +.++..+.+ .+++.++.+|+.. .++.. |.|++.+.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 45799999999999999999999999999997 666655532 3789999999866 24443 877765443
Q ss_pred ccCChH-H------HHHHHHHHHHhCCCCcEEEEEc
Q 017777 270 HDWSDE-H------CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 270 h~~~~~-~------~~~~L~~~~~~L~pgG~lli~e 298 (366)
. |+.. + ...+|+.+.++|+|||.|.+..
T Consensus 112 P-w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 P-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp C-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred c-ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 2 3322 1 1478999999999999998854
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=1e-11 Score=105.55 Aligned_cols=100 Identities=22% Similarity=0.306 Sum_probs=80.1
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCC-C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVP-K 259 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~-~ 259 (366)
...+++.+. +.+..+|||||||+|..+..+++.. ++.+++++|. +.+++.+++ ..++.++.+|..+..+ .
T Consensus 64 ~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~ 142 (213)
T d1dl5a1 64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (213)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred hHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence 345677776 8889999999999999999998875 6778999997 888877764 2688899999876322 2
Q ss_pred --CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 260 --GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|+|++..++++.++ .+.+.|||||+|++.
T Consensus 143 ~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred cchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 399999999998774 245679999999884
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.18 E-value=1e-11 Score=103.36 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=79.7
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCC-CCC--C
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFV-SVP--K 259 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~--~ 259 (366)
.++..+. ..+..+|||||||+|.++..++... .+++++|. +.+++.++++ ++++++++|..+ ..+ .
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 4555565 7788999999999999999998764 47899998 8888877652 689999999876 333 3
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.|+|++....++ ...+++.+.+.|||||++++..
T Consensus 101 ~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEe
Confidence 499998876654 2478999999999999998864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=1.6e-10 Score=106.48 Aligned_cols=111 Identities=14% Similarity=0.242 Sum_probs=83.5
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------------CCceE-EEc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------------PGVEH-VGG 251 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~-~~~ 251 (366)
+..+++.+. +.+..+|||||||+|..+..++..++..+++|+|+ +.+++.|++. ..+.+ ..+
T Consensus 205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 456777777 88889999999999999999999998778999998 7777776531 22333 345
Q ss_pred cCCC-C-----CCCCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 252 DMFV-S-----VPKGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 252 D~~~-~-----~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
++.. + ++..|++++.+.+|. ++....|+++.+.|||||+|++.+...+.
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f~---~~l~~~L~ei~r~LKPGGrIVs~~~~~~~ 338 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSL 338 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred chhhccccccccccceEEEEecccCc---hHHHHHHHHHHHhcCCCcEEEEecccCCC
Confidence 5544 2 223488887665442 55678999999999999999998876544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.5e-10 Score=98.91 Aligned_cols=100 Identities=21% Similarity=0.161 Sum_probs=77.2
Q ss_pred HHHHHhcc-CCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCCC-----------CCceEEEccCCC
Q 017777 190 KKILENYK-GFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPAF-----------PGVEHVGGDMFV 255 (366)
Q Consensus 190 ~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~ 255 (366)
..+++.+. +++++.+|||||||+|..+..+++. .|..+++++|. +++++.+++. .++.++.+|...
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 35565552 2567889999999999999888875 46779999997 8787776532 578899999877
Q ss_pred C-CCC--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 256 S-VPK--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 256 ~-~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
. .+. .|+|++...+++.++ .+.+.|||||+|++.
T Consensus 144 ~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 3 333 399999999988764 256789999999984
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.1e-10 Score=101.78 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=85.0
Q ss_pred HHHHHhhhcchh----hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh-CCCCeEEEecc-hhHHhhCCC-------
Q 017777 176 IFNNGMSSHSTI----TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISK-YPSIKGINFDL-PHVIQDAPA------- 242 (366)
Q Consensus 176 ~~~~~m~~~~~~----~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------- 242 (366)
.|...|...+.. .+..++..++ +.++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++
T Consensus 70 d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~ 148 (324)
T d2b25a1 70 DYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRD 148 (324)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhh
Confidence 344555554443 2445677676 889999999999999999999987 47889999997 777766543
Q ss_pred ----------CCCceEEEccCCCC---CCCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 243 ----------FPGVEHVGGDMFVS---VPKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 243 ----------~~~v~~~~~D~~~~---~~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+++.+..+|+.+. .+.. |.|++ +++++. .+|..++++|||||+|++.-+
T Consensus 149 ~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 149 SWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp HHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEES
T ss_pred hhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeC
Confidence 15799999998762 2332 88876 344443 569999999999999998654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=5.7e-10 Score=100.98 Aligned_cols=94 Identities=20% Similarity=0.173 Sum_probs=71.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCCC-CCCCC--CEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMFV-SVPKG--DAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh 270 (366)
++.+|||||||+|.++..+++... .+++++|..+++..+++ ..++.++.+|+.+ +.|.. |+|++..+.|
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 468999999999999987777543 47899998555544432 2679999999988 66643 9999877666
Q ss_pred cCChH-HHHHHHHHHHHhCCCCcEEE
Q 017777 271 DWSDE-HCVKFLKNCYEALPVNGKVI 295 (366)
Q Consensus 271 ~~~~~-~~~~~L~~~~~~L~pgG~ll 295 (366)
....+ ....++..+.++|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 54433 34578999999999999885
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.92 E-value=6.9e-10 Score=92.47 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=72.8
Q ss_pred CCCCeEEEEeCCccHHHHHH----HHh----CCCCeEEEecc-hhHHhhCCCC---------------------------
Q 017777 200 EGLNSVVDVGGGIGATLNMI----ISK----YPSIKGINFDL-PHVIQDAPAF--------------------------- 243 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l----~~~----~p~~~~~~~D~-~~~~~~a~~~--------------------------- 243 (366)
.+..+|+++|||+|.-...| .+. ..++++++.|+ +.+++.|++.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 45679999999999854433 322 13457888897 7777665420
Q ss_pred ----------CCceEEEccCCCC--CCC-C-CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 244 ----------PGVEHVGGDMFVS--VPK-G-DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 244 ----------~~v~~~~~D~~~~--~~~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
..+.+...+...+ .+. . |+|+|.++|++++++...++|++++++|+|||.|++-.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 1355666666652 222 2 99999999999999988999999999999999988843
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=4.7e-10 Score=100.95 Aligned_cols=95 Identities=20% Similarity=0.158 Sum_probs=71.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC-------CCCceEEEccCCC-CCCCC--CEEEeccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA-------FPGVEHVGGDMFV-SVPKG--DAIFIKWICH 270 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~--D~i~~~~~lh 270 (366)
++.+|||||||+|.++..+++..+ .+++++|..+....+++ .++|.++.+|+.+ +.+.. |+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 468899999999999998887544 37899997333332221 2679999999988 55533 9998877766
Q ss_pred cCChH-HHHHHHHHHHHhCCCCcEEEE
Q 017777 271 DWSDE-HCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 271 ~~~~~-~~~~~L~~~~~~L~pgG~lli 296 (366)
.+..+ ....++..+.+.|+|||+++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 65443 456889999999999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=2.3e-09 Score=96.09 Aligned_cols=97 Identities=20% Similarity=0.129 Sum_probs=72.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC------CCCCCceEEEccCCC-CCCC-C-CEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA------PAFPGVEHVGGDMFV-SVPK-G-DAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a------~~~~~v~~~~~D~~~-~~~~-~-D~i~~~~~ 268 (366)
..++.+|||||||+|.++..+++..+ .+++++|. +.+.... ....++.++.+|+.+ +.+. . |+|++...
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44578999999999999998888654 47999997 4332211 113689999999987 5553 3 99999877
Q ss_pred cccCChH-HHHHHHHHHHHhCCCCcEEEE
Q 017777 269 CHDWSDE-HCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 269 lh~~~~~-~~~~~L~~~~~~L~pgG~lli 296 (366)
.|....+ ....++....+.|+|||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 7765544 455778888899999999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.86 E-value=1.6e-09 Score=91.98 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=74.7
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCC----CCCCceEEEccCCCCCC-C--CC
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAP----AFPGVEHVGGDMFVSVP-K--GD 261 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~v~~~~~D~~~~~~-~--~D 261 (366)
..+++.+. +.+..+|||||||+|.++..|++.. .+++.+|. +..++.++ +..++.++.+|.....+ . +|
T Consensus 60 a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 34666676 8889999999999999998888765 36788886 66666554 34789999999876333 2 39
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+|++...+++.++ .+.+.|+|||+|++.
T Consensus 137 ~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 9999988887764 245679999999884
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.73 E-value=5.5e-09 Score=87.99 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=75.5
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCC---C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVP---K 259 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~---~ 259 (366)
..+++.+. +.+..+|||||||+|..+.-+++... .+++++|. ++.++.+++ ..++.++++|.....+ .
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 45666666 88899999999999999998777653 45777776 666666654 3789999999887433 2
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+|+|++...+...|+. +.+.|+|||+|++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 3999999999877643 44579999999884
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=5.2e-09 Score=86.63 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=85.9
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCC------
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFV------ 255 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~------ 255 (366)
.+.++++.+. ..+...+||++||+|..+..+++++|+.+++++|. +++++.+++ ..++.++.+++.+
T Consensus 11 ll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 11 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 3567777776 67788999999999999999999999999999998 888887764 2689999998764
Q ss_pred CCCC-C-CEEEecccc-----ccC--ChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 256 SVPK-G-DAIFIKWIC-----HDW--SDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 256 ~~~~-~-D~i~~~~~l-----h~~--~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.++. . |.|++-.-+ -.- .-......|..+.++|+|||+++++....
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 1222 2 777664322 110 11234588999999999999999988654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.70 E-value=1.1e-08 Score=86.79 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=75.2
Q ss_pred HHHHHhcc-CCCCCCeEEEEeCCccHHHHHHHHhC------CCCeEEEecc-hhHHhhCCCC-----------CCceEEE
Q 017777 190 KKILENYK-GFEGLNSVVDVGGGIGATLNMIISKY------PSIKGINFDL-PHVIQDAPAF-----------PGVEHVG 250 (366)
Q Consensus 190 ~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~------p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~ 250 (366)
..++..+. ++.+..+|||||||+|..+.-+++.. +..+++.+|. ++.++.++++ .++.+..
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 34565552 26778999999999999988777653 4558999987 7777766532 5899999
Q ss_pred ccCCCCCC---CCCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 251 GDMFVSVP---KGDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 251 ~D~~~~~~---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
+|..+..+ .+|+|++...+...|+ .+.+.|+|||+|++.
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred cccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 99887332 2399999999987764 246789999999884
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.59 E-value=3.8e-08 Score=85.37 Aligned_cols=120 Identities=14% Similarity=0.084 Sum_probs=86.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCCC--CCEEEeccc
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVPK--GDAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~~ 268 (366)
..++.+|||+|||+|.++..+++. +..+++++|+ |.+++.++++ ++++++++|.++-.++ .|.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 346789999999999999998876 4568999998 8777766542 5799999999873333 388876422
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCCcee
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGFQGF 348 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 348 (366)
- ....+|..+.+.|+|||.|.+.+....+. ......+.+.++....||++.
T Consensus 184 ~------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred C------chHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence 1 12367888899999999998766543221 001234567788889999764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=8e-08 Score=83.48 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=85.4
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCCC----CCCEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSVP----KGDAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~----~~D~i~~~~~ 268 (366)
+..+++|+|||+|..+..++ .+|+.+++++|+ +.+++.++++ .++.+..+|++++.+ ..|+|+++--
T Consensus 110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 45789999999999999887 469999999998 8888777652 467888999887543 2399998621
Q ss_pred ------------cccCCh------HHHHHHHHH-HHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCc
Q 017777 269 ------------CHDWSD------EHCVKFLKN-CYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGK 329 (366)
Q Consensus 269 ------------lh~~~~------~~~~~~L~~-~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (366)
.|. |. ++-..++++ +.+.|+|||.+++ |.-. +
T Consensus 189 YI~~~~~l~~~~~~E-P~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~-Eig~-~-------------------------- 239 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFE-PPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGE-D-------------------------- 239 (271)
T ss_dssp CBCGGGSCTTSCCCS-CHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCT-T--------------------------
T ss_pred ccCcccccceeeeec-cccccccccchHHHHHHHHHHhcCCCCEEEE-EECH-H--------------------------
Confidence 111 10 000122222 4567899997665 3211 1
Q ss_pred cCCHHHHHHHHHHcCCceeEEEECCCceeEEEEEecC
Q 017777 330 ERTEQEFRALAKAAGFQGFQVVSSAFNTYIMEFLKSA 366 (366)
Q Consensus 330 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~k~~ 366 (366)
..+.+.+++++.|| .....+...++.++|+|
T Consensus 240 --Q~~~v~~l~~~~g~----~kDl~g~~R~~~~~k~~ 270 (271)
T d1nv8a_ 240 --QVEELKKIVSDTVF----LKDSAGKYRFLLLNRRS 270 (271)
T ss_dssp --CHHHHTTTSTTCEE----EECTTSSEEEEEEECCC
T ss_pred --HHHHHHHHHHhCCE----EeccCCCcEEEEEEEcC
Confidence 13345556666776 24555777888888876
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=8e-07 Score=76.41 Aligned_cols=71 Identities=10% Similarity=-0.032 Sum_probs=55.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC-------CCC--CCEE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS-------VPK--GDAI 263 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-------~~~--~D~i 263 (366)
...++||||||+|..+..|+.++|+++++++|+ +.+++.|+++ .++.++..+.... ..+ .|+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 457999999999999999999999999999998 8888877653 5788777554331 122 3999
Q ss_pred Eecccccc
Q 017777 264 FIKWICHD 271 (366)
Q Consensus 264 ~~~~~lh~ 271 (366)
+++--++.
T Consensus 141 vsNPPY~~ 148 (250)
T d2h00a1 141 MCNPPFFA 148 (250)
T ss_dssp EECCCCC-
T ss_pred EecCcccc
Confidence 99877775
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.40 E-value=8.2e-08 Score=76.35 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=66.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC--CCC--CCCEEEeccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV--SVP--KGDAIFIKWI 268 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~~--~~D~i~~~~~ 268 (366)
.+.+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++ ..+++++.+|... +.+ ..|+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5789999999999999998887654 8999997 777765543 1579999999865 222 3499988533
Q ss_pred cccCChHHHHHHHHHHH--HhCCCCcEEEEE
Q 017777 269 CHDWSDEHCVKFLKNCY--EALPVNGKVIVA 297 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~--~~L~pgG~lli~ 297 (366)
.+ ......+|..+. +.|+|||.+++-
T Consensus 93 y~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 YA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp SH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 22 233446666665 468999988763
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.24 E-value=4.8e-07 Score=74.61 Aligned_cols=67 Identities=24% Similarity=0.164 Sum_probs=52.2
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-CCceEEEccCCCCCCCCCEEEecccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-PGVEHVGGDMFVSVPKGDAIFIKWIC 269 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~~D~i~~~~~l 269 (366)
+.+|||+|||+|.++..++...+. +++++|+ +.+++.++++ .+++++++|+.+.....|+|+++--+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCccc
Confidence 589999999999999877775443 7899998 8888877754 78999999987532334999987443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.24 E-value=2.7e-07 Score=77.53 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=68.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCCC-------CC--CCE
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVSV-------PK--GDA 262 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-------~~--~D~ 262 (366)
++.+|||||||+|..+..+++..+ +.+++.+|. ++..+.+++. ++|+++.+|..+-. .. .|+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 478999999999999999999875 579999997 7777766542 67999999976521 11 288
Q ss_pred EEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 263 IFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 263 i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|++-+ +.........+.+..+.|+|||.|++-+...
T Consensus 136 ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 136 VFLDH---WKDRYLPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp EEECS---CGGGHHHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred eeecc---cccccccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 87652 2111222244677778899999766544333
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.7e-07 Score=77.73 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=74.9
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCC-------CCCceEEEccCCC--C------CC-CC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFV--S------VP-KG 260 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~------~~-~~ 260 (366)
..+..+|||||||+|..+..+++..| +.+++.+|. ++..+.+++ .++++++.+|..+ + .+ ..
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 34589999999999999999999986 678999997 666665543 3789999998755 1 12 23
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|+|+.-. +.+.....+..+.+.|+|||.|++-+....
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 8888642 223456788999999999999999766543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.17 E-value=3.5e-07 Score=81.19 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=74.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC-----------CCCceEEEccCCC---CCCC-CCE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA-----------FPGVEHVGGDMFV---SVPK-GDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~---~~~~-~D~ 262 (366)
.+++.+||.||+|.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ ..+. .|+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 34678999999999999999998777888999998 888876653 2689999999876 2233 399
Q ss_pred EEeccc--cccC-ChH--HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 263 IFIKWI--CHDW-SDE--HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 263 i~~~~~--lh~~-~~~--~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|++-.. ...- +.. -..++++.+++.|+|||.+++.-
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 986321 1110 000 12478999999999999988754
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.16 E-value=2.9e-06 Score=71.56 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=74.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCC-------CCCceEEEccCCCC---C------C-CC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPA-------FPGVEHVGGDMFVS---V------P-KG 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~---~------~-~~ 260 (366)
.++.+||+||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+- . . ..
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 3589999999999999999999987 578899987 666665554 26799999987651 1 1 23
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
|+|++-. ........++.+.+.|+|||.|++-+...
T Consensus 138 D~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl~ 173 (227)
T d1susa1 138 DFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTLW 173 (227)
T ss_dssp SEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred eEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence 9998742 22345688999999999999999976644
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.13 E-value=4.3e-07 Score=81.31 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=72.0
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC---C---C-CCCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS---V---P-KGDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~---~-~~D~i~ 264 (366)
.+..+|||+|||+|.++..++.... .+++++|+ +.+++.++++ ++++++.+|+++. . . ..|+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4678999999999999999887644 38999998 7777777542 5789999998751 1 1 239999
Q ss_pred ecccc---ccCCh----HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IKWIC---HDWSD----EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~l---h~~~~----~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+.--- +.-.. .....+++.+.++|+|||.|+.+..
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 84222 11111 1234688889999999999998753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.09 E-value=4e-06 Score=71.10 Aligned_cols=85 Identities=13% Similarity=0.246 Sum_probs=63.0
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhh----CCCCCCceEEEccCCC-CCCCC-
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQD----APAFPGVEHVGGDMFV-SVPKG- 260 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~~v~~~~~D~~~-~~~~~- 260 (366)
....+++... .....+|||||||+|.++..|++... +++++++ +..++. ....++++++.+|+++ +.+..
T Consensus 9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 4556777666 77889999999999999999999765 4666654 444433 3345899999999998 66655
Q ss_pred CEEEeccccccCChH
Q 017777 261 DAIFIKWICHDWSDE 275 (366)
Q Consensus 261 D~i~~~~~lh~~~~~ 275 (366)
...+..+.-|+.+.+
T Consensus 86 ~~~vv~NLPYnIss~ 100 (235)
T d1qama_ 86 SYKIFGNIPYNISTD 100 (235)
T ss_dssp CCEEEEECCGGGHHH
T ss_pred cceeeeeehhhhhHH
Confidence 566667777776544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.05 E-value=2.2e-06 Score=73.19 Aligned_cols=90 Identities=14% Similarity=0.230 Sum_probs=68.0
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCCC-C
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPKG-D 261 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~-D 261 (366)
...+++.+. ..+..+|||||||+|.++..|++... +++++|. +.+++.+++ .++++++.+|+++ +.+.. +
T Consensus 18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 557787776 77889999999999999999999754 6777776 566665554 2689999999998 77654 6
Q ss_pred EEEeccccccCChHHHHHHH
Q 017777 262 AIFIKWICHDWSDEHCVKFL 281 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L 281 (366)
..+..+.-++.+.+-...++
T Consensus 95 ~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHH
T ss_pred eeEeeeeehhhhHHHHHHHh
Confidence 66777788888865433333
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.03 E-value=5.4e-07 Score=80.37 Aligned_cols=97 Identities=11% Similarity=0.012 Sum_probs=70.3
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC------CCceEEEccCCCC---C---C-CCCEEEec
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF------PGVEHVGGDMFVS---V---P-KGDAIFIK 266 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~---~-~~D~i~~~ 266 (366)
.+.+|||++||+|.++..++.. ..+++.+|. +.+++.++++ .+++++++|.++. . . ..|+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4689999999999999988763 457899997 7788777642 6789999998751 1 1 23999974
Q ss_pred cccccCCh-------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 267 WICHDWSD-------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 267 ~~lh~~~~-------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
---...+. .....+++.+.++|+|||.|+++..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22111111 1234789999999999999988653
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.00 E-value=4.8e-06 Score=68.95 Aligned_cols=68 Identities=13% Similarity=0.024 Sum_probs=51.0
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-----CCceEEEccCCCCCCCCCEEEeccccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-----PGVEHVGGDMFVSVPKGDAIFIKWICH 270 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~~~~lh 270 (366)
+.+|||+|||+|.++..++.+.+ .+++++|+ +.+++.++++ .+.+++.+|........|+|+++--.+
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFG 120 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCS
T ss_pred CCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccc
Confidence 57999999999999998876543 48899998 7777666542 567888888765333459999875543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.00 E-value=2.2e-06 Score=74.64 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------------CCCceEEEccCCC---CCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------------FPGVEHVGGDMFV---SVP 258 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~D~~~---~~~ 258 (366)
..++.+||.||+|.|..+..+++ ++..+++++|+ |.+++.+++ .+|++++.+|... .-.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 35678999999999999998876 56568888888 888876642 3689999999865 222
Q ss_pred CCCEEEeccccccCChHH---HHHHHHHHHHhCCCCcEEEEEc
Q 017777 259 KGDAIFIKWICHDWSDEH---CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 259 ~~D~i~~~~~lh~~~~~~---~~~~L~~~~~~L~pgG~lli~e 298 (366)
..|+|++-.. +...... ..++++.+++.|+|||.+++.-
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 3499986432 2221111 1478999999999999988753
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.00 E-value=1.6e-06 Score=75.91 Aligned_cols=99 Identities=25% Similarity=0.288 Sum_probs=72.6
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC---CCCC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV---SVPK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~-~D~i~ 264 (366)
+++.+||-||+|.|..+..+++..|..+++.+|+ |.+++.+++ .+|++++.+|..+ ..+. .|+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4678999999999999999988767778888888 888887754 2789999999876 2223 39998
Q ss_pred eccccccC-ChHH--HHHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDW-SDEH--CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~-~~~~--~~~~L~~~~~~L~pgG~lli~e 298 (366)
+-..-..- +... ..++++.+++.|+|||.+++.-
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 64221110 1000 2478999999999999998863
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=2.4e-06 Score=74.53 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=73.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC---CCCC-CCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV---SVPK-GDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~-~D~i 263 (366)
.+.+.+||-||+|.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|... ..++ .|+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 45678999999999999999987767778898988 888887764 2799999999776 2233 3999
Q ss_pred EeccccccCChH---HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHDWSDE---HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~~~~~---~~~~~L~~~~~~L~pgG~lli~e 298 (366)
++-. .+..... --.++++.+++.|+|||.+++.-
T Consensus 156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 8742 2211111 12378999999999999998863
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.96 E-value=7.3e-06 Score=71.98 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCCC-------CCCCE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVSV-------PKGDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~-------~~~D~ 262 (366)
..++.+|||+.||+|.++..++.. +.+++.+|. +.+++.++++ .+++++++|+++.. ...|+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456789999999999999988874 568999997 7777777642 36899999987621 12499
Q ss_pred EEec---cccc----cCC-hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 263 IFIK---WICH----DWS-DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 263 i~~~---~~lh----~~~-~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
|++. +.-. .|. ......+++.+.++|+|||.++++..
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 9973 1111 011 12345677889999999998777654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.94 E-value=3.7e-06 Score=72.96 Aligned_cols=98 Identities=21% Similarity=0.228 Sum_probs=72.9
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC---CCCC-CCEEE
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV---SVPK-GDAIF 264 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~-~D~i~ 264 (366)
.++.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|... ..+. .|+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4678999999999999999998767778888887 888777643 3789999999876 2223 39998
Q ss_pred eccccccCCh-H--HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 265 IKWICHDWSD-E--HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 265 ~~~~lh~~~~-~--~~~~~L~~~~~~L~pgG~lli~e 298 (366)
.-..- .... . --.++++.+++.|+|||.++..-
T Consensus 154 ~D~~~-p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCC-CCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 64221 1100 0 02478999999999999998753
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.90 E-value=2e-06 Score=69.45 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=59.1
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC----C-CCCCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS----V-PKGDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~----~-~~~D~i~~ 265 (366)
...+.+|||+|||+|.++...+.+ +.+++.+|. +.+++.++++ .++.....|.+.+ . ...|+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 346789999999999999988875 457888997 8887766542 3344444443321 1 12399988
Q ss_pred ccccccCChH-HHHHHHHHHHHhCCCCcEEEEE
Q 017777 266 KWICHDWSDE-HCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 266 ~~~lh~~~~~-~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.--++ .+.. ....++. ..+|+|||.+++.
T Consensus 117 DPPY~-~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 117 APPYA-MDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp CCCTT-SCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred ccccc-cCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 54332 2222 2222332 3578999987764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=4.2e-06 Score=73.19 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=74.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC---CCCC--CCE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV---SVPK--GDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~--~D~ 262 (366)
.+++.+||-||+|.|..+..+++..|-.+++.+|+ +.+++.+++ .+|++++.+|.++ ..++ .|+
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 35678999999999999999988766667888888 888887765 3789999999765 2333 399
Q ss_pred EEeccccccCChH---HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 263 IFIKWICHDWSDE---HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 263 i~~~~~lh~~~~~---~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|+.-.. ...... -...+++.+++.|+|||.+++.-
T Consensus 158 Ii~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 158 VIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 986322 111111 12478999999999999999864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=4.2e-06 Score=68.24 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=65.3
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC--CC-CC-CCEEEeccccc
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV--SV-PK-GDAIFIKWICH 270 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~--~~-~~-~D~i~~~~~lh 270 (366)
..+|||++||+|.++.+.+.+... +++.+|. +.+++.+++ ..+++++..|+++ .. .. .|+|++.--..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 579999999999999999887664 7888887 666665543 2578888888776 22 22 39999865443
Q ss_pred cCChHHHHHHHHHHHH--hCCCCcEEEEE
Q 017777 271 DWSDEHCVKFLKNCYE--ALPVNGKVIVA 297 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~--~L~pgG~lli~ 297 (366)
. .....++..+.+ +|+|+|.+++-
T Consensus 123 ~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 123 R---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp T---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred c---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2 223355666654 58999877773
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.83 E-value=3.9e-06 Score=73.77 Aligned_cols=100 Identities=20% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----------CCCceEEEccCCC---CCCC-CCEE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----------FPGVEHVGGDMFV---SVPK-GDAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~-~D~i 263 (366)
.+.+.+||-||+|.|..+..+++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+ ..+. .|+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 34678999999999999999998666668999988 888877654 2789999999876 2223 3999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhCCCCcEEEEEc
Q 017777 264 FIKWICHDWSDE--HCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 264 ~~~~~lh~~~~~--~~~~~L~~~~~~L~pgG~lli~e 298 (366)
++-..--.-+.. -...+++.+++.|+|||.++..-
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 874221110111 13578999999999999999863
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.80 E-value=6.1e-06 Score=73.21 Aligned_cols=99 Identities=18% Similarity=0.062 Sum_probs=69.3
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC--------CCceEEEccCCCC------CCC-CCE
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF--------PGVEHVGGDMFVS------VPK-GDA 262 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~------~~~-~D~ 262 (366)
...+.+|||+.||+|.++..++... ..+++.+|+ +..++.++++ .+++++++|.++. ... .|+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3467899999999999998877633 336889997 6666655432 5789999998762 122 399
Q ss_pred EEeccc-c-----ccCCh-HHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 263 IFIKWI-C-----HDWSD-EHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 263 i~~~~~-l-----h~~~~-~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
|++--- + .-+.- ....++++.+.++|+|||.|++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 987311 0 00111 234578999999999999999865
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=6.5e-05 Score=60.64 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=77.0
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecchhHHhhCCCCCCceEEEccCCC-CC--------
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDLPHVIQDAPAFPGVEHVGGDMFV-SV-------- 257 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~-------- 257 (366)
-+.++.+.+.-+.+..+|||+||+.|.++..+.+.. +...++++|+.++ ...+++.++.+|+.+ ..
T Consensus 9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~ 84 (180)
T d1ej0a_ 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERV 84 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhc
Confidence 355677777756778899999999999999888765 4467899997432 335788999999876 21
Q ss_pred CC--CCEEEeccccccCCh----HH-----HHHHHHHHHHhCCCCcEEEEEc
Q 017777 258 PK--GDAIFIKWICHDWSD----EH-----CVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 258 ~~--~D~i~~~~~lh~~~~----~~-----~~~~L~~~~~~L~pgG~lli~e 298 (366)
.. .|+|++-.....-.. +. +...|.-+.+.|+|||.+++--
T Consensus 85 ~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 85 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 12 299988655443221 11 2366777889999999999854
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.71 E-value=4.4e-05 Score=63.66 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=70.3
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCC-CeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCC-CCEEEe
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPS-IKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPK-GDAIFI 265 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~-~D~i~~ 265 (366)
+-+++.+. ...+.+|||.|||+|.++..+.++.+. ..++++|+ +..+..+ .+..++.+|.+. +... .|+++.
T Consensus 9 ~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~ 84 (223)
T d2ih2a1 9 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 84 (223)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceecc
Confidence 34455444 556789999999999999998887665 46899997 4433222 345777888776 3222 388887
Q ss_pred ccccccCC--h-------H------------------HHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHDWS--D-------E------------------HCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~--~-------~------------------~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+..+.... . . -...++.++.+.|+|||++.++-+
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 64432110 0 0 123567889999999999888753
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.67 E-value=2e-05 Score=70.31 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=71.2
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-----CCCeEEEecc-hhHHhhCCC-----CCCceEEEccCCCCCC--CCCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-----PSIKGINFDL-PHVIQDAPA-----FPGVEHVGGDMFVSVP--KGDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~~--~~D~i~~ 265 (366)
.....+|||.+||+|.++..+.++. ++..++++|+ +.++..++. .....+..+|.+...+ ..|+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 3456799999999999999887653 4557899997 666665543 2567788888776433 3499999
Q ss_pred ccccccCChHH----------------HHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHDWSDEH----------------CVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~~~----------------~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+--+......+ ...++..+.+.|+|||++.++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 85542211111 12479999999999999877644
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.59 E-value=2.4e-05 Score=63.50 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=68.7
Q ss_pred HHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC-------CCceEEEccCCCC------C
Q 017777 192 ILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF-------PGVEHVGGDMFVS------V 257 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~ 257 (366)
+.+.+...-.+.+|||+.||+|.++.+.+.+... +++.+|. +.+++.++++ .+++++.+|+++- .
T Consensus 32 lFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~ 110 (182)
T d2fhpa1 32 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE 110 (182)
T ss_dssp HHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhccc
Confidence 3333332335789999999999999999987654 7888887 6666655432 5799999998651 1
Q ss_pred C-CCCEEEeccccccCChHHHHHHHHHHHH--hCCCCcEEEE
Q 017777 258 P-KGDAIFIKWICHDWSDEHCVKFLKNCYE--ALPVNGKVIV 296 (366)
Q Consensus 258 ~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~--~L~pgG~lli 296 (366)
. ..|+|++---.+. .....+|..+.+ +|+|+|.+++
T Consensus 111 ~~~fDlIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 111 KLQFDLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp TCCEEEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCcceEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEE
Confidence 1 2399988544322 223466777754 6899997664
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=2.7e-05 Score=64.30 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=68.9
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hh---HHhhCC---CCCCceEEEccCCCCCC--CCCEEEecccccc
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PH---VIQDAP---AFPGVEHVGGDMFVSVP--KGDAIFIKWICHD 271 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~---~~~~v~~~~~D~~~~~~--~~D~i~~~~~lh~ 271 (366)
...+|+|||+|.|.-+.-++-.+|+.+++.+|. .. .++.+. ...++++++....+..+ ..|+|++.-+--
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~~- 143 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFAS- 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSS-
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhcC-
Confidence 356899999999999999999999999999995 22 222221 13689999988876322 349888765531
Q ss_pred CChHHHHHHHHHHHHhCCCCcEEEEEc
Q 017777 272 WSDEHCVKFLKNCYEALPVNGKVIVAE 298 (366)
Q Consensus 272 ~~~~~~~~~L~~~~~~L~pgG~lli~e 298 (366)
...+++-+...++++|++++.-
T Consensus 144 -----~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 144 -----LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -----HHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEC
Confidence 3478888899999999998864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.55 E-value=3.8e-05 Score=62.12 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=78.8
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC--CCCceEEEccCCC-C-----CC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA--FPGVEHVGGDMFV-S-----VP 258 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~D~~~-~-----~~ 258 (366)
.+.++++.+. ..++..++|..+|.|..+..+++. +.+++++|. |.+++.+++ .+++.++..++.+ . ..
T Consensus 6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 3566777776 677889999999999999999996 468999998 888777653 3789999888754 1 12
Q ss_pred -CC-CEEEecc-----ccccCCh--HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 259 -KG-DAIFIKW-----ICHDWSD--EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 259 -~~-D~i~~~~-----~lh~~~~--~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.. |.|++-. -+.+-.+ ......|....+.|+|||+++++..
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 22 7776632 2222111 1234578999999999999999875
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.52 E-value=0.00031 Score=58.70 Aligned_cols=109 Identities=14% Similarity=0.029 Sum_probs=66.7
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHh---h-CCCC--CCceEEEccCCCCCC--C
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQ---D-APAF--PGVEHVGGDMFVSVP--K 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~---~-a~~~--~~v~~~~~D~~~~~~--~ 259 (366)
.+.++.+.+- +.+..+|+|+|||.|.++..++...+...+.++++-.... . ...+ .-+.+...+.....+ .
T Consensus 54 Kl~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~ 132 (257)
T d2p41a1 54 KLRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 132 (257)
T ss_dssp HHHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCc
Confidence 3556667664 7778899999999999999998876655666665411110 0 1111 224454443322222 2
Q ss_pred CCEEEeccccccCCh----HHHHHHHHHHHHhCCCCcEEEEE
Q 017777 260 GDAIFIKWICHDWSD----EHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~----~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
.|+|+|-..-+.-+. +....+|.-+.++|+|||.+++-
T Consensus 133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 399998654332111 12337788888999999987773
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.51 E-value=3.1e-05 Score=52.92 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=48.1
Q ss_pred hChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhc
Q 017777 43 LDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVC 113 (366)
Q Consensus 43 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~ 113 (366)
+.|++.+...+ .|+|+.|||+.+|+ ++.-+.|+|..|+..|+++++ . +++|.+++..
T Consensus 8 l~IL~~~a~~~--~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~----~----~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----K----DKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----C----CCCEeecHHH
Confidence 45778888754 58999999999999 999999999999999999974 2 4679888654
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.47 E-value=0.00021 Score=59.88 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHHHhccCCCCCCeEEEEeCCccHHHHHHHHh----CCCCeEEEecc-hhHHhhC-CCCCCceEEEccCCCC--C---C
Q 017777 190 KKILENYKGFEGLNSVVDVGGGIGATLNMIISK----YPSIKGINFDL-PHVIQDA-PAFPGVEHVGGDMFVS--V---P 258 (366)
Q Consensus 190 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a-~~~~~v~~~~~D~~~~--~---~ 258 (366)
..++..+. +.+|||||++.|..+..++.. .++.+++++|+ +...... ...++++++.+|..++ . .
T Consensus 73 ~eli~~~K----Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 73 HDMLWELR----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp HHHHHHHC----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGS
T ss_pred HHHHHHhC----CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHH
Confidence 34555443 789999999999876654432 36789999997 4333222 2247999999997652 1 1
Q ss_pred C--CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 259 K--GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 259 ~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
. .|.|++-.. |.. +....-+ .....|+|||+++|-|.+
T Consensus 149 ~~~~dlIfID~~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 149 EMAHPLIFIDNA-HAN--TFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SSCSSEEEEESS-CSS--HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred hcCCCEEEEcCC-cch--HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 2 277776433 552 2222334 366899999999997753
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.45 E-value=0.00013 Score=61.41 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=88.4
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH---HhhCC---CCCCceEEEccCCC-----CCCC-CCEEEe
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV---IQDAP---AFPGVEHVGGDMFV-----SVPK-GDAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~---~~~~v~~~~~D~~~-----~~~~-~D~i~~ 265 (366)
+....+++|||+|.|.-+.-++-.+|+.+++.+|. ..- ++.+. ...++.++...+.. +..+ .|+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 34567999999999999999998999999999995 222 22221 13677777765543 2222 399988
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCCCCCCchhhhhhhhcchhhHhhCCCCccCCHHHHHHHHHHcCC
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPVTPDTSLASKVVIHVDCIMLAHNPGGKERTEQEFRALAKAAGF 345 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 345 (366)
.-+-. ...++.-+...+++||++++.-... ..-..++.++.++..|+
T Consensus 148 RAva~------l~~ll~~~~~~l~~~g~~i~~KG~~---------------------------~~~El~~a~~~~~~~~~ 194 (239)
T d1xdza_ 148 RAVAR------LSVLSELCLPLVKKNGLFVALKAAS---------------------------AEEELNAGKKAITTLGG 194 (239)
T ss_dssp ECCSC------HHHHHHHHGGGEEEEEEEEEEECC----------------------------CHHHHHHHHHHHHHTTE
T ss_pred hhhhC------HHHHHHHHhhhcccCCEEEEECCCC---------------------------hHHHHHHHHHHHHHcCC
Confidence 75431 3478999999999999998864210 00013344567788898
Q ss_pred ceeEEEEC--C---CceeEEEEEec
Q 017777 346 QGFQVVSS--A---FNTYIMEFLKS 365 (366)
Q Consensus 346 ~~~~~~~~--~---~~~~vie~~k~ 365 (366)
+..++... + +...++.+.|.
T Consensus 195 ~~~~v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 195 ELENIHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeCCCCCCCEEEEEEEEC
Confidence 87665442 2 34456666654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.0015 Score=55.97 Aligned_cols=93 Identities=16% Similarity=0.272 Sum_probs=61.0
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhh----CCCC---CCceEEEccCCC-CCCC
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQD----APAF---PGVEHVGGDMFV-SVPK 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~----a~~~---~~v~~~~~D~~~-~~~~ 259 (366)
....+++... ......|||||+|.|.++..|++....+.++-.| +..++. .... .+++++.+|+++ +.+.
T Consensus 9 i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D-~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~ 86 (278)
T d1zq9a1 9 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD-PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 86 (278)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC-HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEc-cchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence 3456777665 6678899999999999999999987654455555 333322 2222 579999999998 6665
Q ss_pred CCEEEeccccccCChHHHHHHHHHHHHh
Q 017777 260 GDAIFIKWICHDWSDEHCVKFLKNCYEA 287 (366)
Q Consensus 260 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~ 287 (366)
.+.++ .+.-|+.+ ..++.++...
T Consensus 87 ~~~vV-~NLPY~Is----s~il~~~~~~ 109 (278)
T d1zq9a1 87 FDTCV-ANLPYQIS----SPFVFKLLLH 109 (278)
T ss_dssp CSEEE-EECCGGGH----HHHHHHHHHC
T ss_pred hhhhh-cchHHHHH----HHHHHHHHhh
Confidence 55555 44445443 2455554443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00023 Score=60.49 Aligned_cols=84 Identities=11% Similarity=0.098 Sum_probs=59.1
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC----CCCceEEEccCCC-CCCC--
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA----FPGVEHVGGDMFV-SVPK-- 259 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~-- 259 (366)
....+++... ..+...|||||||.|.++..|++... +++.+++ +..++..++ .++++++.+|+.+ +.++
T Consensus 9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence 3556777665 67788999999999999999999765 4555554 555544332 3789999999986 4321
Q ss_pred ----CCEEEeccccccCCh
Q 017777 260 ----GDAIFIKWICHDWSD 274 (366)
Q Consensus 260 ----~D~i~~~~~lh~~~~ 274 (366)
.-+.+..+.-++.+.
T Consensus 86 ~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHTSCEEEEEECCTTTHH
T ss_pred cccCCCeEEEecchHHHHH
Confidence 145666777777654
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.89 E-value=0.0024 Score=55.39 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=73.3
Q ss_pred CCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------CCCceEEEccCCCCC----------CCC
Q 017777 200 EGLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------FPGVEHVGGDMFVSV----------PKG 260 (366)
Q Consensus 200 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~----------~~~ 260 (366)
.+...|+.+|||--....++ ...++++++-+|.|++++.-++ ..+..++..|+.++. +..
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45678888999998888777 3357889999999988864221 134667777876531 111
Q ss_pred -CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEE
Q 017777 261 -DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 261 -D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~ 297 (366)
-++++-.++++++.++..++|+.+.+...||+.|++-
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4666678899999999999999999999999998774
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.67 E-value=0.029 Score=49.38 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCCeEEEEeCCccHHHH-------H-HHHh--------CCCCeEEEecchhH-----HhhCCCC----CC--ceEEEccC
Q 017777 201 GLNSVVDVGGGIGATLN-------M-IISK--------YPSIKGINFDLPHV-----IQDAPAF----PG--VEHVGGDM 253 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~-------~-l~~~--------~p~~~~~~~D~~~~-----~~~a~~~----~~--v~~~~~D~ 253 (366)
+.-+|.|+||.+|..+. . +.+. -|.+.+..-|+|.- ....... +. +.-+++.+
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 44689999999997652 2 2221 24555666686421 2211111 12 34467898
Q ss_pred CC-CCCCC--CEEEeccccccCCh-------------------------------HHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 254 FV-SVPKG--DAIFIKWICHDWSD-------------------------------EHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 254 ~~-~~~~~--D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.. -+|.. |++++++.||+++. .+...+|+.=++=|+|||++++.-.
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 88 67866 99999999998752 1334678888888999999999877
Q ss_pred ccCC
Q 017777 300 ILPV 303 (366)
Q Consensus 300 ~~~~ 303 (366)
..++
T Consensus 211 gr~~ 214 (359)
T d1m6ex_ 211 GRRS 214 (359)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 6654
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.59 E-value=0.00032 Score=50.31 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=51.2
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
.+|.-..++.|+..|.. +|.++.|||+.+|+ ++..+...|+.|...|+|... ++|+ .-.|+++
T Consensus 18 kaL~~p~Rl~Il~~L~~----~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~----r~G~-~~~Y~l~ 80 (98)
T d1r1ta_ 18 AVLADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR----KQGR-HVYYQLQ 80 (98)
T ss_dssp HHHCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEES
T ss_pred HHhCCHHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE----EECC-EEEEEEC
Confidence 45666677888898977 59999999999999 999999999999999999864 3442 2456655
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.51 E-value=0.00089 Score=53.89 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=60.3
Q ss_pred CCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC--------CCCceEEEccCCC----CC--CCCCEEEec
Q 017777 202 LNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA--------FPGVEHVGGDMFV----SV--PKGDAIFIK 266 (366)
Q Consensus 202 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~----~~--~~~D~i~~~ 266 (366)
..+|||+-||+|.++.+.+.+... +++.+|. ..+++..++ .....+...|..+ .. +..|+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 578999999999999999987654 7888886 555543332 1245666666543 11 123999885
Q ss_pred cccccCChHHHHHHHHHHHH--hCCCCcEEEE
Q 017777 267 WICHDWSDEHCVKFLKNCYE--ALPVNGKVIV 296 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~--~L~pgG~lli 296 (366)
--... .....+|..+.. +|+++|.+++
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEE
Confidence 44332 233466777655 6898887766
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.46 E-value=0.00039 Score=49.43 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=52.3
Q ss_pred HHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 34 PMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 34 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
+.+|.-..++.|+..|.. ++.++.||++.+++ ++..+.+.|+.|...|+|... ++|+ .-.|+++
T Consensus 12 fkaL~d~~Rl~Il~~L~~----~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~----r~G~-~~~Y~l~ 75 (94)
T d1r1ua_ 12 FKALGDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK----RQGQ-SMIYSLD 75 (94)
T ss_dssp HHHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEES
T ss_pred HHHhCCHHHHHHHHHHHc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEE----EECC-EEEEEEC
Confidence 446666678888999988 59999999999999 999999999999999999864 3442 2357666
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=96.40 E-value=0.00077 Score=49.16 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 32 VLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 32 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
-.+.+|.-..++.|+..|... ++.++.|||+.+++ .+..+.+.|+.|...|+|... ++|+ .-.|+++.
T Consensus 23 ~~~kaLadp~Rl~Il~~L~~~---~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~----r~G~-~~~Y~l~~ 90 (108)
T d1u2wa1 23 QILKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR----KEGK-LALYSLGD 90 (108)
T ss_dssp HHHHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEEEESC
T ss_pred HHHHHhCCHHHHHHHHHHHhC---CCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEE----EECC-EEEEEECH
Confidence 345678888899999998654 58999999999999 999999999999999999863 4443 34566653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0066 Score=53.92 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=64.0
Q ss_pred HHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCC------CCCceEEEccCCCCCC-----
Q 017777 191 KILENYKGFEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFVSVP----- 258 (366)
Q Consensus 191 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~----- 258 (366)
.+.+.+. ..+..+|||+-||+|.++..|++.. .+++++|. +++++.|++ ..+++|+.+|..+..+
T Consensus 203 ~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~ 279 (358)
T d1uwva2 203 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 279 (358)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence 4444444 5667899999999999999998754 47888887 777776654 2689999999876321
Q ss_pred -C-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEE
Q 017777 259 -K-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIV 296 (366)
Q Consensus 259 -~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli 296 (366)
. .|+|++-- |..-+.++++.+.+. +|.-.++|
T Consensus 280 ~~~~d~vilDP-----PR~G~~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 280 KNGFDKVLLDP-----ARAGAAGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp TTCCSEEEECC-----CTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred hccCceEEeCC-----CCccHHHHHHHHHHc-CCCEEEEE
Confidence 2 28887731 222122445555554 56555555
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.34 E-value=0.002 Score=58.95 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=72.9
Q ss_pred HHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhCC-------------CCeEEEecc-hhHHhhCCC--------CCCc
Q 017777 189 MKKILENYKGFEGLNSVVDVGGGIGATLNMIISKYP-------------SIKGINFDL-PHVIQDAPA--------FPGV 246 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~--------~~~v 246 (366)
..-+++.+. .....+|+|-.||+|.++..+.+... ...+.++|. +.....++. ....
T Consensus 151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 444455444 45578999999999999988776542 234778886 545443321 2456
Q ss_pred eEEEccCCCCCCC--CCEEEeccccccCC---------------hHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 247 EHVGGDMFVSVPK--GDAIFIKWICHDWS---------------DEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 247 ~~~~~D~~~~~~~--~D~i~~~~~lh~~~---------------~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.+...|.+...+. .|+|+.+--+..-. ......++..+.+.|+|||++.++-+
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 7888888874332 39999876553210 01124689999999999999888643
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.014 Score=51.08 Aligned_cols=102 Identities=10% Similarity=0.127 Sum_probs=80.5
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecchhHHhhCCC---------------------------CCCceEEEccC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDLPHVIQDAPA---------------------------FPGVEHVGGDM 253 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D~ 253 (366)
+...|+-+|||.-....++...+|+++++-+|.|++++.-++ .++.+.+..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 356899999999999999998899999999999888753210 14678888998
Q ss_pred CC-CC---------CCC--CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 254 FV-SV---------PKG--DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 254 ~~-~~---------~~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
.+ .. ... -++++-.+|.+++.++..++|+.+.+.. |+|.+++.|++.+.
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~~ 236 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGS 236 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCC
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCCC
Confidence 76 11 111 4678889999999999999999999888 56788899998644
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.20 E-value=0.00087 Score=48.13 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=55.6
Q ss_pred HHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchh
Q 017777 36 VLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKF 115 (366)
Q Consensus 36 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~ 115 (366)
++..-.++.|+..|... ++.|+.|||+.+++ .+..+.+.|+.|...|+|+.... +.|+. .-.|.+|+.+..
T Consensus 12 ~l~~p~r~~IL~~L~~~---~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~-~~d~r-~~~~~LT~~G~~ 82 (100)
T d1ub9a_ 12 ILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKV-IADRP-RTVVEITDFGME 82 (100)
T ss_dssp HHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEECHHHHH
T ss_pred hcCCHHHHHHHHHhccC---CCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEc-CcCCc-cccccCCHHHHH
Confidence 44455678889999765 59999999999999 99999999999999999986421 11211 235889988764
Q ss_pred hh
Q 017777 116 LT 117 (366)
Q Consensus 116 l~ 117 (366)
..
T Consensus 83 ~~ 84 (100)
T d1ub9a_ 83 EA 84 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.05 E-value=0.0016 Score=52.88 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=53.1
Q ss_pred HHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhch
Q 017777 35 MVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCK 114 (366)
Q Consensus 35 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~ 114 (366)
.+|.--.++.|+..|.+ +|.|+.|||+.+++ ++..+++.|+.|...|+|+...+....|.....|.++..+.
T Consensus 10 ~~l~~~~R~~Il~~L~~----~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 34444556777888877 59999999999999 99999999999999999985421111222234688887654
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=95.42 E-value=0.0052 Score=40.82 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=41.6
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.-+..|+..|... +|+|..|||+.+|+ ++.-+.+.++.|...|+|.+
T Consensus 6 ~N~~~Il~~l~~~---g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e 52 (71)
T d1z05a1 6 INAGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHE 52 (71)
T ss_dssp HHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 3345688888886 59999999999999 99999999999999999985
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.36 E-value=0.022 Score=43.10 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=51.8
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|||++.. .++|+. .-.+.+|+.+..+.
T Consensus 35 t~~q~~vL~~l~~~---~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~-~~~D~R-~~~l~lT~~G~~~~ 104 (141)
T d1lnwa_ 35 TPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGLAIH 104 (141)
T ss_dssp CHHHHHHHHHHHSS---TTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSSS-SEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHC---CCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeec-cCCCCc-chhhccCHHHHHHH
Confidence 44566677778765 37999999999999 9999999999999999998752 123321 23466776665443
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.16 E-value=0.0056 Score=49.19 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 33 LPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 33 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
...+|.--.++.|+..|.. +|.|+.|||+.+|+ ++..+.+.|+.|...|+|+..
T Consensus 12 ~~~~l~~p~R~~Il~~L~~----~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~ 65 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 65 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 4567777888999999976 59999999999999 999999999999999999753
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.0067 Score=39.20 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=39.9
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.++.|+..|.+. +.+|.+|||+.+++ +..-+++-+..|...|+.-.
T Consensus 6 ~~~~iL~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~ 51 (63)
T d1biaa1 6 VPLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVF 51 (63)
T ss_dssp HHHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHC---CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEE
Confidence 356788888775 58999999999999 99999999999999998543
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.06 E-value=0.011 Score=38.41 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=40.3
Q ss_pred HHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccc-cc
Q 017777 38 KSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSV-LN 92 (366)
Q Consensus 38 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~-l~ 92 (366)
+.--...|+..|.+.. +++|+++||+.+++ +..-++|-+..|...|+ +.
T Consensus 5 k~eR~~~Il~~L~~~~--~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~ 54 (65)
T d1j5ya1 5 RQERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIV 54 (65)
T ss_dssp HHHHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 3344566788887642 58999999999999 99999999999999997 54
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.92 E-value=0.063 Score=41.64 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=60.1
Q ss_pred eEEEEeCCc--cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-CCCCCCEEEeccccccCChHHHHH
Q 017777 204 SVVDVGGGI--GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-SVPKGDAIFIKWICHDWSDEHCVK 279 (366)
Q Consensus 204 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~D~i~~~~~lh~~~~~~~~~ 279 (366)
+|+=||||. +.++..|.+..+..+++++|. ++.++.+++...+.....+... .....|+|++.- |......
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 578899993 446667777777889999997 7777777654444433333322 222348888653 3456778
Q ss_pred HHHHHHHhCCCCcEEEEE
Q 017777 280 FLKNCYEALPVNGKVIVA 297 (366)
Q Consensus 280 ~L~~~~~~L~pgG~lli~ 297 (366)
+++.+.+.++++..++-+
T Consensus 78 vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp HHHHHHHHSCTTCEEEEC
T ss_pred hhhhhhcccccccccccc
Confidence 999999999988666543
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.0083 Score=38.59 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=39.1
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|+..|.+ +|+|..|||+.+|+ +..-+.+.++.|...|++.+.
T Consensus 3 ~Il~~i~~----~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 3 RILKRIMK----SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CSHHHHHH----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence 57788877 59999999999999 999999999999999999863
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=94.72 E-value=0.0033 Score=43.49 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=43.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+++|..+||+.+++ ++..+.++|+.|...|++.+. .||. .-.|.+|+.+..++
T Consensus 20 ~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~----~D~R-~~~i~LT~~G~~~l 72 (85)
T d3ctaa1 20 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRT----VTKR-GQILNITEKGLDVL 72 (85)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee----cccc-cccceECHHHHHHH
Confidence 58999999999999 999999999999999999973 3432 34577888776554
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.016 Score=38.20 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=41.0
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+..|+..|... +|+|..|||+.+|+ +..-+.++++.|...|+|.+
T Consensus 7 ~~~Il~~i~~~---g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e 51 (70)
T d1z6ra1 7 AGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQE 51 (70)
T ss_dssp HHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 44588889887 69999999999999 99999999999999999985
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=94.67 E-value=0.011 Score=38.32 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|-++.|||+.+|+ ++..++.+|+.|+..|.|.+.
T Consensus 22 ~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI 56 (64)
T d1lvaa3 22 QPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI 56 (64)
T ss_dssp SCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES
T ss_pred CCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 48899999999999 999999999999999999975
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.078 Score=45.97 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=38.7
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhH---HhhCCCCCCceEEEccCCC
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHV---IQDAPAFPGVEHVGGDMFV 255 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~~~~v~~~~~D~~~ 255 (366)
....|||||+|.|.++..|++...--++++++. +.. +......++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999999999998742226666764 322 3222234789999999874
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=94.40 E-value=0.019 Score=42.63 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=35.6
Q ss_pred HHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 46 LEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 46 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
+-.|+.. +|.|.++||+.+++ ++..++++|+.|...|+|+-
T Consensus 10 L~~la~~---~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s 50 (127)
T d1xd7a_ 10 LSLISMD---EKTSSEIIADSVNT----NPVVVRRMISLLKKADILTS 50 (127)
T ss_dssp HHHHHTC---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHhcC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccc
Confidence 4444543 48999999999999 99999999999999999985
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.12 E-value=0.0086 Score=43.34 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=38.8
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
+..|+..|...+ +|+|+.+||+.+++ ++..+.+.|+-|...|+|.+.
T Consensus 23 ~~~iL~~L~~~~--~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T d2d1ha1 23 DVAVLLKMVEIE--KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEe
Confidence 344555554332 58999999999999 999999999999999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.07 E-value=0.07 Score=41.96 Aligned_cols=100 Identities=21% Similarity=0.125 Sum_probs=61.6
Q ss_pred hccCCCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-----------CCCCC-
Q 017777 195 NYKGFEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-----------SVPKG- 260 (366)
Q Consensus 195 ~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-----------~~~~~- 260 (366)
.........+||-+|+| .|.++..+++...--+++++|. ++-.+.+++..--.++...-.+ ..+.+
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~ 101 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGA 101 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCc
Confidence 33335667899999998 4778888888765447888886 6666666654222222111000 11233
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccccC
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESILP 302 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~ 302 (366)
|+|+-.- . . ...++...+.|+|||+++++-...+
T Consensus 102 Dvvid~v--G---~---~~~~~~a~~~l~~~G~iv~~G~~~~ 135 (182)
T d1vj0a2 102 DFILEAT--G---D---SRALLEGSELLRRGGFYSVAGVAVP 135 (182)
T ss_dssp EEEEECS--S---C---TTHHHHHHHHEEEEEEEEECCCCSC
T ss_pred eEEeecC--C---c---hhHHHHHHHHhcCCCEEEEEeecCC
Confidence 7776321 1 1 1357888899999999998875433
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.061 Score=45.81 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhC----CCC--CCceEEEccCCC---CCCC-CCEEEe--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDA----PAF--PGVEHVGGDMFV---SVPK-GDAIFI-- 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~--~~v~~~~~D~~~---~~~~-~D~i~~-- 265 (366)
.....+|||+.+|.|.=+..+++...+.+++..|. +.-+... ++. ..+.....|... ..+. .|.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56678999999999999999998888888888885 3222222 211 234444444332 1222 377766
Q ss_pred ----ccccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 ----KWICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ----~~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..++. .|+..+ -.++|+++.+.|||||+|+-..-.
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 23332 222221 257899999999999988876643
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.81 E-value=0.026 Score=42.88 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|...+ |++|..+||+.+++ +...+.++++-|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 34 ~~q~~vL~~L~~~~--g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~-~~~DrR-~~~i~LT~~G~~~~ 103 (145)
T d2hr3a1 34 FSQLVVLGAIDRLG--GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEGRRNL 103 (145)
T ss_dssp HHHHHHHHHHHHTT--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeee-Cccchh-HHHhccCHHHHHHH
Confidence 45667777776543 58999999999999 9999999999999999998741 112211 13577777777554
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.68 E-value=0.023 Score=39.37 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=43.9
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 57 FMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 57 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
+.+...|...+++ +...+...|..|...|+++.+ ++.|.+|+.+..|+.
T Consensus 18 g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~~---------~~~Y~iT~kG~~~L~ 66 (90)
T d1r7ja_ 18 GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELLE 66 (90)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHHH
T ss_pred CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeeec---------CCEEEECccHHHHHH
Confidence 4578999999999 999999999999999999863 588999999987774
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.024 Score=42.79 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=53.2
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..++-++..|... ++.|+.+||+.+++ +...+.+.++.|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 31 t~~q~~iL~~l~~~---~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~-~~~D~R-~~~l~lT~~G~~~~ 100 (140)
T d2etha1 31 KTTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGKEIF 100 (140)
T ss_dssp BHHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeee-cccccc-hhhhhcCHHHHHHH
Confidence 34566688888887 48999999999999 9999999999999999999752 122211 13577777776555
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=93.52 E-value=0.036 Score=41.50 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=52.1
Q ss_pred HHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 40 AIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 40 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
..++.++..|... ++.|..+||+.+++ ++..+.++++-|+..|++++.. .+.|+. .-...+|+.+..+.
T Consensus 34 ~~q~~vL~~i~~~---~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~-~~~D~R-~~~l~lT~~G~~~~ 102 (136)
T d2bv6a1 34 YPQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSETIR 102 (136)
T ss_dssp HHHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEee-cCCccc-chhhccCHHHHHHH
Confidence 3456677788776 48999999999999 9999999999999999998752 122221 13567787776554
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.42 E-value=0.078 Score=42.33 Aligned_cols=103 Identities=17% Similarity=0.053 Sum_probs=64.9
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-C---------CCCC-CEEEe
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-S---------VPKG-DAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~---------~~~~-D~i~~ 265 (366)
.+...+||.+|||. |..+..+++.....+++++|. +.-++.+++.. ..... +..+ + -+.+ |+++-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G-a~~~~-~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-FEIAD-LSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-CEEEE-TTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc-ccEEE-eCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 77788999999997 667777777777778889987 66677766542 22221 2111 1 1223 77764
Q ss_pred cccc------cc-CChHHHHHHHHHHHHhCCCCcEEEEEccccCC
Q 017777 266 KWIC------HD-WSDEHCVKFLKNCYEALPVNGKVIVAESILPV 303 (366)
Q Consensus 266 ~~~l------h~-~~~~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 303 (366)
.--. |. .........|+.+.++++|||++.++-...++
T Consensus 101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~ 145 (195)
T d1kola2 101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTE 145 (195)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSC
T ss_pred CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCC
Confidence 3211 10 00011236799999999999999998754433
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.39 E-value=0.018 Score=41.54 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=40.7
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..++..|... |+.|+.|||+.+++ +...+.+.|+-|...|+|.+.
T Consensus 21 ~e~~v~~~L~~~---g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 21 SDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence 345567777766 59999999999999 999999999999999999863
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.38 E-value=0.079 Score=45.75 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=64.6
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhCC-CCeEEEecc-hhHHhhCCC------CCCceEEEccCCC-CC-C-CCCEEEe--
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKYP-SIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV-SV-P-KGDAIFI-- 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~-~-~~D~i~~-- 265 (366)
...+.+|||+.+|.|.=+..++.... +..++..|. +.-+...++ ..++.+...|... +. . ..|.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 45678999999999998888887764 457788886 433333221 2456666666544 21 2 2377765
Q ss_pred ----ccccc-------cCChHH-------HHHHHHHHHHhCCCCcEEEEEccc
Q 017777 266 ----KWICH-------DWSDEH-------CVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 266 ----~~~lh-------~~~~~~-------~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
..++. .+..++ -.++|.++.+.|||||+|+-..-.
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 12221 222222 247899999999999988776643
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.22 E-value=0.044 Score=51.06 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=66.3
Q ss_pred hHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC----C--------------CCeEEEecc-hhHHhhCCC------
Q 017777 188 TMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY----P--------------SIKGINFDL-PHVIQDAPA------ 242 (366)
Q Consensus 188 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p--------------~~~~~~~D~-~~~~~~a~~------ 242 (366)
+..-+++.+. .....+|+|-.||+|.++....+.. . ...++++|+ +.+...++.
T Consensus 152 Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 152 LIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 3444555444 4456799999999999998765542 1 124678886 555443321
Q ss_pred C-----CCceEEEccCCC-C---CCCCCEEEecccccc-C------------ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 243 F-----PGVEHVGGDMFV-S---VPKGDAIFIKWICHD-W------------SDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 243 ~-----~~v~~~~~D~~~-~---~~~~D~i~~~~~lh~-~------------~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. ..-.+..++.+. + .+..|+|+.+--+-. + +..+ ..++..+.+.|+|||++.++-+
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccccCcEEEEEe
Confidence 0 122344555544 1 123488888654421 0 1112 3689999999999999888643
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.05 E-value=0.034 Score=35.27 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=41.7
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++..|.+.|.++ +..|..|||+.+++ ++..+.+-++.|...|++..
T Consensus 4 ~D~~Il~~L~~n---~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d2cyya1 4 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 49 (60)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 466788899986 58999999999999 99999999999999999984
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.03 E-value=0.031 Score=35.46 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=41.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|...|.++ +..|..+||+++|+ ++..+.+-++.|...|++..
T Consensus 4 ~D~kIl~~L~~n---~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 4 RDKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 356688888886 58999999999999 99999999999999999984
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.77 Score=35.09 Aligned_cols=95 Identities=9% Similarity=-0.048 Sum_probs=60.1
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC----------CCCC-CEEEe
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS----------VPKG-DAIFI 265 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~----------~~~~-D~i~~ 265 (366)
..+..+||=+|||. |..+..+++.....++++.|. ++-++.+++..--.+...+-.++ .+.+ |+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 66678899999985 455666666655447899997 76777666542222222221111 1223 87765
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESIL 301 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~~ 301 (366)
.-- . ...++...+.++|||++++.-...
T Consensus 104 ~~G-----~---~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG-----A---EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred ccC-----C---chhHHHHHHHhcCCCEEEEEecCC
Confidence 322 1 256888999999999999987543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.58 E-value=0.038 Score=49.06 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=65.6
Q ss_pred CCCeEEEEeCCccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCC---------------------CCceEEEccCCC---
Q 017777 201 GLNSVVDVGGGIGATLNMIISKYPSIKGINFDL-PHVIQDAPAF---------------------PGVEHVGGDMFV--- 255 (366)
Q Consensus 201 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~--- 255 (366)
++.+|||..||+|..+.+.+...+..+++..|+ +..++.++++ ..+.+.+.|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 367899999999999999888777668889998 7777766542 124444555432
Q ss_pred CCCC-CCEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 256 SVPK-GDAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 256 ~~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
...+ .|+|.+-- +..+ ..+|..+.++++.||.|.|.-.
T Consensus 125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----CCCc--HHHHHHHHHHhccCCEEEEEec
Confidence 1233 38887643 2322 4689999999999999988643
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=92.40 E-value=0.12 Score=38.70 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=51.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.++.++..|... +|.|+.+||+.+++ ++..+.+.++-|+..|+|++.. .++|+. .-.+.+|+.+..+..
T Consensus 36 ~q~~iL~~l~~~---~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~-~~~D~R-~~~v~lT~~G~~~~~ 104 (143)
T d1s3ja_ 36 AQLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH-NTKDRR-VIDLSLTDEGDIKFE 104 (143)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeee-ecCCCC-ceEEEECHHHHHHHH
Confidence 344577777776 48999999999999 9999999999999999998752 122211 124778877775553
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.39 E-value=0.04 Score=41.25 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=47.6
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++-.|...+ ++.|..+||+.+++ ++..+.++++.|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 30 q~~iL~~l~~~~--~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~-~~~D~R-~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 30 RWLVLLHLARHR--DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADVLI 97 (137)
T ss_dssp HHHHHHHHHHCS--SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHHHH
T ss_pred HHHHHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccC-CCCCCC-chhhhcCHHHHHHH
Confidence 344455555432 36899999999999 9999999999999999999752 122221 12466776666554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.34 E-value=0.59 Score=35.65 Aligned_cols=93 Identities=12% Similarity=0.017 Sum_probs=60.0
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-C-----------CCCC-CEE
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-S-----------VPKG-DAI 263 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~-----------~~~~-D~i 263 (366)
.....+||-+||| .|.++..+++.. +.+++++|. ++-++.+++..--.....+... + .+.+ |++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5667889999988 677777777765 579999997 6666666654222222222211 1 1233 777
Q ss_pred EeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 264 FIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 264 ~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
+-.-- . ...+..+.+.++|+|++++.-..
T Consensus 103 id~~g-----~---~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSG-----N---EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EECSC-----C---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred eecCC-----C---hHHHHHHHHHHhcCCceEEEecC
Confidence 64321 1 25678888999999999998753
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=92.32 E-value=0.022 Score=42.99 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=51.7
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.+.-++..|... +|.|+.+||+.+++ +...+.+.++-|+..|++++.. .++|+. .-.+.+|+.+..++.
T Consensus 31 ~q~~iL~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~-~~~D~R-~~~i~LT~~G~~~~~ 99 (139)
T d2a61a1 31 AQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTP-DPADRR-AYFLVITRKGEEVIE 99 (139)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeee-ccCCCC-eEEEEECHHHHHHHH
Confidence 345566667665 48999999999999 9999999999999999998752 122211 245888888876653
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.034 Score=41.81 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=52.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... ++.|..+||+.+++ +...+.++++.|+..|+|++.. .+.|+. .-.+.+|+.+..+.
T Consensus 35 ~q~~vL~~l~~~---~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~-~~~D~R-~~~i~lT~~G~~~~ 102 (138)
T d1jgsa_ 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHhHHhC---cCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEee-ccCCCC-eeEEEECHHHHHHH
Confidence 456667777665 48999999999999 9999999999999999998742 122221 23688887777655
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.042 Score=35.22 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=41.4
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|+..|.+. +..|..|||+++|+ ++..+.+=++-|...|++..
T Consensus 6 ~D~~IL~~L~~~---~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 6 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 456788899886 59999999999999 99999999999999999984
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=92.15 E-value=0.046 Score=40.74 Aligned_cols=72 Identities=10% Similarity=0.226 Sum_probs=52.6
Q ss_pred HHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 39 SAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 39 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..++.++..|...+ ++++|..|||+.+++ +...+.+.++-|+..|+|.+.. .+.|+. .-.+.+|+.+..+.
T Consensus 28 t~~q~~vL~~l~~~~-~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~-~~~D~R-~~~i~lT~~G~~~~ 99 (135)
T d3broa1 28 TGTQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANKLE 99 (135)
T ss_dssp CHHHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHTTH
T ss_pred CHHHHHHHHHHHHcC-CCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHh-hhhhhh-hhhhcccHHHHHHH
Confidence 345566777777642 257999999999999 9999999999999999998742 112221 23588888776555
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=92.12 E-value=0.054 Score=34.67 Aligned_cols=46 Identities=17% Similarity=0.406 Sum_probs=41.3
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
.+..|++.|.++ +..|..+||+.+|+ ++.-+.+=++-|...|++..
T Consensus 6 ~D~~IL~~L~~n---~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 456788899886 59999999999999 99999999999999999984
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.07 E-value=0.63 Score=35.95 Aligned_cols=93 Identities=14% Similarity=0.071 Sum_probs=61.9
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC---------CCCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS---------VPKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~---------~~~~-D~i~~~ 266 (366)
.+...+||=+|||. |.++..+++...-.++++.|. ++-.+.+++..--.++...-.+. .+.+ |+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 66778999999996 888888888887667888887 55566666543333332111111 1233 877643
Q ss_pred cccccCChHHHHHHHHHHHHhCCCC-cEEEEEcc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVN-GKVIVAES 299 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pg-G~lli~e~ 299 (366)
-- . ...+....+.++|| |+++++-.
T Consensus 106 ~G-----~---~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AG-----T---AQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred cc-----c---chHHHHHHHHhhcCCeEEEecCC
Confidence 21 1 25688899999996 99999764
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=92.00 E-value=0.031 Score=42.15 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=36.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccch
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAP 111 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (366)
.+.|+++||+.+++ ++..++++|..|...|+|+-. .| .|.|.+..
T Consensus 22 ~~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~-----rG--~GG~~L~~ 66 (138)
T d1ylfa1 22 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN-----RG--PGGAGLLK 66 (138)
T ss_dssp GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee-----cC--CCCceecC
Confidence 48999999999999 999999999999999999852 34 35566663
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=91.36 E-value=0.072 Score=33.79 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=32.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++.+..+||+.+|+ .++-+...++-|...|+|+.
T Consensus 20 ~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~ 53 (61)
T d2ev0a1 20 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIY 53 (61)
T ss_dssp SSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC
T ss_pred CCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence 58999999999999 99999999999999999996
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=91.01 E-value=0.06 Score=40.26 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=50.9
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
++.++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.. .++|+. .-...+|+.+..+..
T Consensus 35 q~~vL~~l~~~---~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~-~~~D~R-~~~i~lT~~G~~~~~ 102 (137)
T d1z91a1 35 QYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGALLKE 102 (137)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHSGGG
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEee-cCCCCC-eEEEEECHHHHHHHH
Confidence 44456667665 48999999999999 9999999999999999998752 122221 134788888876654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.77 E-value=0.54 Score=35.76 Aligned_cols=86 Identities=14% Similarity=0.027 Sum_probs=55.1
Q ss_pred eEEEEeCC--ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCCCCCCEEEeccccccCChHHHHHH
Q 017777 204 SVVDVGGG--IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSVPKGDAIFIKWICHDWSDEHCVKF 280 (366)
Q Consensus 204 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~~lh~~~~~~~~~~ 280 (366)
+|.=||+| .+.++..|.+ .+.+++++|. ++..+.+++...+.... +..+.....|+|++.- |......+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIilav-----p~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLCT-----PIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEECS-----CHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHH--CCCEEEEEECCchHHHHHHHhhccceee-eecccccccccccccC-----cHhhhhhh
Confidence 56778887 3445555655 4668899997 66666665443333222 2222334559988642 45677799
Q ss_pred HHHHHHhCCCCcEEEEE
Q 017777 281 LKNCYEALPVNGKVIVA 297 (366)
Q Consensus 281 L~~~~~~L~pgG~lli~ 297 (366)
++++...++|+..++-.
T Consensus 74 l~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 74 LEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhcccccceeec
Confidence 99999999988866543
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.71 E-value=0.065 Score=41.88 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=47.6
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.|+-.|...+++.++|..+||+.+++ ++..+.++++-|+..|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 64 q~~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~-~~~DrR-~~~i~LT~~G~~l~ 133 (172)
T d2fbka1 64 GWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRALV 133 (172)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeec-cccchh-hHHhhcCHHHHHHH
Confidence 4445566655432235899999999999 9999999999999999999752 112211 12466777776555
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.67 E-value=0.06 Score=40.88 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=40.1
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.+..|+..|..++ +|+|+.|||+.+++ +...+.+.|+-|...|+|.+.
T Consensus 27 ~~~~i~~~L~~~~--~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~ 74 (151)
T d1ku9a_ 27 SVGAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (151)
T ss_dssp HHHHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCC--CCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEE
Confidence 3445666675443 58999999999999 999999999999999999864
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.61 E-value=0.04 Score=41.24 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=51.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.++.++..|... ++.|..+||+.+++ +...+.++++-|+..|+|++.. .+.|+. .-.+.+|+.+..+..
T Consensus 31 ~q~~vL~~l~~~---~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~-~~~D~R-~~~l~lT~~G~~~~~ 99 (136)
T d2fbia1 31 QQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK-APKDQR-RVYVNLTEKGQQCFV 99 (136)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEee-cCccCc-hhhhccCHHHHHHHH
Confidence 345566777776 48999999999999 9999999999999999998752 122211 134777777775553
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.53 E-value=0.9 Score=34.73 Aligned_cols=93 Identities=14% Similarity=0.019 Sum_probs=57.9
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-------CCCCC-CEEEeccc
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-------SVPKG-DAIFIKWI 268 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-------~~~~~-D~i~~~~~ 268 (366)
..+..+||-+|+|. |..+..+++.....++++.|. ++-.+.+++.....++..+-.. ..+.+ |+++-.-.
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 45667899999985 455567777666667888886 5556666554333444322110 01233 66654321
Q ss_pred cccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 269 CHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 269 lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. ...++...+.++|||+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEEEEEEEECCC
T ss_pred -----c---chHHHHHHHHHhCCCEEEEEeC
Confidence 1 2458888899999999999764
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=90.38 E-value=0.073 Score=38.54 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=48.3
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..|...+ ++++|..+||+.+++ ++..+.+.++.|+..|++.+.. .++|+. .-.+.+|+.+....
T Consensus 35 q~~vL~~l~~~~-~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~-~~~D~R-~~~i~LT~~G~~~~ 103 (115)
T d2frha1 35 EFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKKI 103 (115)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHHH
T ss_pred HHHHHHHHHcCC-CCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeee-cccCCc-eEEEEECHHHHHHH
Confidence 344455565431 256899999999999 9999999999999999999852 122221 13467777766544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.02 E-value=0.3 Score=37.46 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=61.0
Q ss_pred HHhccCCCCCCeEEEEeC-C-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC--------CCCC-
Q 017777 193 LENYKGFEGLNSVVDVGG-G-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS--------VPKG- 260 (366)
Q Consensus 193 ~~~~~~~~~~~~vLDvG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~--------~~~~- 260 (366)
++... .....+||=+|| | .|.++..+++.....++++.|. ++-.+.+++..--.++..+-.+. .+.+
T Consensus 20 l~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 20 VRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp HHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred HHHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence 34444 667789999996 3 6677777888776678888886 55555554332112222221111 1233
Q ss_pred CEEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 261 DAIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 261 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
|+++-... . ...++.+.+.++|||+++++-..
T Consensus 99 d~vid~~g-----~---~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 99 DAVIDLNN-----S---EKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEEESCC-----C---HHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhhcccc-----c---chHHHhhhhhcccCCEEEEeccc
Confidence 77765322 1 24577788899999999998654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.93 E-value=0.35 Score=37.40 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=61.1
Q ss_pred HHHhccCCCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC------C-CCC-C
Q 017777 192 ILENYKGFEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS------V-PKG-D 261 (366)
Q Consensus 192 ~~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~------~-~~~-D 261 (366)
+.+... ..+..+||-+|||. |..+..+++.....++++.|. +.-++.+++..-.+++..+-.+. . +.+ |
T Consensus 20 ~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 20 CINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp HHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred HHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 344444 66788899999984 456667777776667777775 65666665543333433221110 1 223 7
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 262 AIFIKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 262 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
+++-.-- . ...++.+.+.++|+|+++++-.
T Consensus 99 ~vid~~G-----~---~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 99 FALESTG-----S---PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEECSC-----C---HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEEcCC-----c---HHHHHHHHhcccCceEEEEEee
Confidence 7664311 1 2567888999999999998764
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.15 Score=33.08 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=45.9
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccc
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLA 110 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (366)
...||..|...+.+.++++++|++++ ++ +..-++.-++.|...|.+--+ -| ++.|..|
T Consensus 8 q~~V~~~i~s~~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsT----iD---ddHfkst 66 (69)
T d1dpua_ 8 QNQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST----VD---DDHFKST 66 (69)
T ss_dssp HHHHHHHHHHCCCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEEC----SS---TTEEEES
T ss_pred HHHHHHHHHhCCCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecc----cc---cchhccc
Confidence 44567777765545689999999999 79 999999999999999999643 12 5788766
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=89.86 E-value=0.17 Score=35.22 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=43.5
Q ss_pred CCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 56 AFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 56 ~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
|+....||.+.+ |+ ++..|.+=|+.|+..|+|++... .+.+..-.|++|+.+..+.
T Consensus 23 g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~--~~~p~~veY~LT~~G~~L~ 79 (95)
T d2hzta1 23 GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVY--NQVPPKVEYELSEYGRSLE 79 (95)
T ss_dssp CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE--CSSSCEEEEEECTTGGGGH
T ss_pred CCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheec--cccccchhhhhhhhHHHHH
Confidence 589999999998 89 99999999999999999987521 1111123499998887666
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=89.84 E-value=0.064 Score=40.19 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=49.0
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhhc
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
.++.++..|...+ ++.|..+||+.+++ +...+.+.++-|+..|+|.+.. .++|+. .-.+.+|+.+..+..
T Consensus 32 ~~~~~L~~l~~~~--~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~-~~~D~R-~~~l~lT~~G~~~~~ 101 (140)
T d3deua1 32 THWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEPLIA 101 (140)
T ss_dssp HHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHcC--CCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecc-cCCCCC-ceeeEECHHHHHHHH
Confidence 3445666666532 36999999999999 9999999999999999998642 122221 135888887776553
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=89.49 E-value=0.13 Score=33.52 Aligned_cols=55 Identities=24% Similarity=0.190 Sum_probs=46.5
Q ss_pred CCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 55 DAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 55 ~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.+|-|...|+++.++ +-+.|||.|..|.+.|+++.. ..+|| .+.=++|..+..++
T Consensus 22 g~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~--~~edG--~G~A~Lt~~G~~lc 76 (81)
T d2obpa1 22 ATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVS--VEADG--RGHASLTQEGAALA 76 (81)
T ss_dssp CCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--ECTTS--CEEEEECHHHHHHH
T ss_pred CCCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeee--eccCC--cceeeccHHHHHHH
Confidence 468999999999999 999999999999999999865 34666 57788888777655
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=89.40 E-value=0.086 Score=39.77 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=48.4
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|++.+ .++|+. .-...+|+.+..+.
T Consensus 31 q~~iL~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~-~~~D~R-~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 31 QYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccC-CCCCCC-ccccccCHHHHHHH
Confidence 44455566665 37999999999999 9999999999999999998752 122211 12566776666554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.97 E-value=0.42 Score=36.61 Aligned_cols=94 Identities=17% Similarity=0.106 Sum_probs=57.2
Q ss_pred HhccCCCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-----CCCCC-CEEEe
Q 017777 194 ENYKGFEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-----SVPKG-DAIFI 265 (366)
Q Consensus 194 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-----~~~~~-D~i~~ 265 (366)
+... ..+..+||=+|+| .|.++..+++.. +++.+++|. ++-.+.+++..--.++ |..+ ....+ |+++-
T Consensus 24 ~~~~-~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i--~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 24 RHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVV--NSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEE--ETTCHHHHHTTTTCEEEEEE
T ss_pred HHhC-CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEE--ECchhhHHHHhcCCCceeee
Confidence 4444 6777888889987 577888888876 567777775 4445555433222222 2222 11123 77764
Q ss_pred ccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 266 KWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 266 ~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.-.- + ..++...+.++|+|+++++-.
T Consensus 100 ~~g~-----~---~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 100 TVAA-----P---HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CCSS-----C---CCHHHHHTTEEEEEEEEECCC
T ss_pred eeec-----c---hhHHHHHHHHhcCCEEEEecc
Confidence 3211 1 236677789999999999864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.83 E-value=0.54 Score=36.32 Aligned_cols=94 Identities=16% Similarity=0.036 Sum_probs=59.4
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC------C--CCCC-CEEEecc
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV------S--VPKG-DAIFIKW 267 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~------~--~~~~-D~i~~~~ 267 (366)
..+..+||=+|||. |..+..+++...-.+++++|. ++-.+.+++..-.+++..+-.+ . .+.+ |+++-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 66778888899996 788888888765447899997 5556666543222222211111 1 1233 8776432
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 268 ICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 268 ~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
-- ...++...+.++|+|+++++-..
T Consensus 105 g~--------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 105 GG--------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp SC--------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CC--------HHHHHHHHHHHhcCCEEEEEeec
Confidence 11 14577788899999999997653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=88.82 E-value=2.1 Score=32.68 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=58.9
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCC---------CCCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVS---------VPKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~---------~~~~-D~i~~~ 266 (366)
.....+||=+|||. |..+..+++.....++++.|. ++-++.+++..-..++...-.+. .+.+ |+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 66788999999985 456666777666668999997 66677776654333332111111 1223 777643
Q ss_pred cccccCChHHHHHHHHHHHHhCCC-CcEEEEEccccC
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPV-NGKVIVAESILP 302 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~p-gG~lli~e~~~~ 302 (366)
-.- ...+......+++ +|+++++-...+
T Consensus 105 ~g~--------~~~~~~~~~~~~~~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 105 AGR--------IETMMNALQSTYCGSGVTVVLGLASP 133 (174)
T ss_dssp SCC--------HHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred CCC--------chHHHHHHHHHHHhcCceEEEEEecC
Confidence 221 2456666666655 589998775443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=0.24 Score=38.14 Aligned_cols=93 Identities=16% Similarity=0.049 Sum_probs=56.6
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEc-cCCC---CCCCC-CEEEec-cccc
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGG-DMFV---SVPKG-DAIFIK-WICH 270 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-D~~~---~~~~~-D~i~~~-~~lh 270 (366)
..+..+||-+|+| .|.++..+++. .+++++++|. ++-++.+++..--.++.. +..+ ..... |+++-. ..-+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~-~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKA-MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhh-ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6778899999998 67777777776 4679998986 555666654321122221 1111 12233 776543 2222
Q ss_pred cCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 271 DWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 271 ~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
.. .+....+.|+|+|+++++-.
T Consensus 104 ~~-------~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEEEEEEEECCC
T ss_pred cc-------hHHHHHHHhhccceEEEecc
Confidence 11 14456778999999999864
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=88.70 E-value=0.15 Score=37.46 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=49.2
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|... +++++|..|||+.+++ +...+.+.++.|...|+|++.. .+.|.. .-...+|+.++...
T Consensus 35 ~q~~iL~~l~~~-~~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~-~~~D~R-~~~i~lT~~G~~~~ 104 (125)
T d1p4xa1 35 KEFILLTYLFHQ-QENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVR-SKIDER-NTYISISEEQREKI 104 (125)
T ss_dssp HHHHHHHHHHSC-SCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEE-CSSSTT-SEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeec-ccCCCC-eEEEEECHHHHHHH
Confidence 355566667553 2357899999999999 9999999999999999998752 122211 12466666665443
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.13 E-value=0.22 Score=31.64 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++.+..+||+.+++ .++-+.+.++-|...|+|..
T Consensus 22 ~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~ 55 (63)
T d2isya1 22 VTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRV 55 (63)
T ss_dssp CCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence 58999999999999 99999999999999999996
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.14 Score=31.47 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=37.3
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
++|..|.++ ...|+.+||.++++ ....+.|.|..|...|-+.+
T Consensus 6 ~~l~~lg~~---~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k 48 (59)
T d2gxba1 6 KFLEELGEG---KATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQK 48 (59)
T ss_dssp HHHHHHCTT---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCCc---cchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhh
Confidence 456666654 58899999999999 99999999999999999986
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.73 E-value=0.35 Score=36.92 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=56.4
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCCCC------CCC-CEEEecccc
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFVSV------PKG-DAIFIKWIC 269 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~------~~~-D~i~~~~~l 269 (366)
..+..+||=+|+| .|..+..+++.. +.+++++|. ++-++.+++..--.++..+-.+.. ..+ |.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 6667888889988 566667777766 579999997 666666665432333322211110 112 33332211
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 270 HDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 270 h~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
. ...+....+.|+|+|+++++-.
T Consensus 103 ---~----~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 103 ---S----NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp ---C----HHHHHHHHTTEEEEEEEEECCC
T ss_pred ---c----chHHHHHHHHhcCCcEEEEEEe
Confidence 1 1457888899999999999753
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=87.71 E-value=0.12 Score=39.92 Aligned_cols=67 Identities=18% Similarity=0.010 Sum_probs=48.9
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
+..++..|... ++.|+.+||+.+++ +...+.++++-|...|+|++.. .+.|+. .-...+|+.+..+.
T Consensus 43 q~~vL~~l~~~---~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~-~~~D~R-~~~l~lT~~G~~~~ 109 (162)
T d2fxaa1 43 EHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTEVF 109 (162)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHHHH
T ss_pred HHHHHhhhccC---CCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeec-ccccCe-eeeeccCHhHHHHH
Confidence 44467777775 48999999999999 9999999999999999999752 122211 13577777776554
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=87.68 E-value=0.43 Score=41.80 Aligned_cols=60 Identities=8% Similarity=0.159 Sum_probs=38.1
Q ss_pred cCchHHHHHHHHhhhcchhhHHHHHHhccCCCCCCeEEEEeCCccHHHHHHHHhC-------CCCeEEEecc
Q 017777 169 KDLRFNKIFNNGMSSHSTITMKKILENYKGFEGLNSVVDVGGGIGATLNMIISKY-------PSIKGINFDL 233 (366)
Q Consensus 169 ~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 233 (366)
..|+....|..+.+.+ ...+...+. .++..+|||+|+|+|.++..++..+ ..++++.++.
T Consensus 52 Tsp~is~~Fg~~ia~~----~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~ 118 (365)
T d1zkda1 52 TSPEISQMFGELLGLW----SASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 118 (365)
T ss_dssp SHHHHCHHHHHHHHHH----HHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCchHHHHHHHHHHH----HHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence 3455556666655432 223333343 4456789999999999998887654 2345677776
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=87.47 E-value=0.16 Score=36.67 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=47.4
Q ss_pred hhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 42 ELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 42 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
++.++..|... .+++.|..+||+.+++ ++..+.++++-|+..|+|.+... ++|+. .-...+|+.+..++
T Consensus 34 q~~vL~~l~~~-~~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~~-~~D~R-~~~i~LT~~G~~~~ 102 (115)
T d1hsja1 34 EIYILNHILRS-ESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRS-LQDER-TVIVYVTDTQKANI 102 (115)
T ss_dssp HHHHHHHHHTC-SCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEEC-CSSSS-CCEEECCSSHHHHH
T ss_pred HHHHHHHHHcc-CCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEee-cCCCc-eEEEEECHHHHHHH
Confidence 34456666531 1258999999999999 99999999999999999997521 22221 12456666655443
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.36 E-value=0.23 Score=37.31 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCC
Q 017777 21 NLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPD 100 (366)
Q Consensus 21 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 100 (366)
+...++++..-|...+|+.+ .. |+.+..||.+.+++ ++..|.+-|+.|...|+|++.. ++.
T Consensus 10 v~~~l~ilg~kW~l~Il~~l---------~~----G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~--~~~ 70 (142)
T d2f2ea1 10 VARPLDVIGDGWSMLIVRDA---------FE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVP--AES 70 (142)
T ss_dssp TTTTHHHHCSSSHHHHHHHH---------HT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE--CSS
T ss_pred HHHHHHHHcCCCHHHHHHHH---------Hc----CCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeec--CCC
Confidence 34456677667777666543 23 59999999999999 9999999999999999998631 111
Q ss_pred Cccccccccchhchhhh
Q 017777 101 GKVERLYGLAPVCKFLT 117 (366)
Q Consensus 101 g~~~~~y~~t~~~~~l~ 117 (366)
. ..-.|.+|+.+..|.
T Consensus 71 p-~r~~Y~LT~~G~~L~ 86 (142)
T d2f2ea1 71 G-SHQEYRLTDKGRALF 86 (142)
T ss_dssp S-SCEEEEECHHHHTTH
T ss_pred C-CeeEEecCcCcchHH
Confidence 1 134699998888666
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=86.79 E-value=0.24 Score=34.88 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccC
Q 017777 20 ANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNL 98 (366)
Q Consensus 20 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 98 (366)
+.+..++++.+-|...+|.. |.. |+....||.+.+ ++ ++..|.+=|+.|+..|+|.+...
T Consensus 9 pv~~~l~ilg~kW~l~Il~~---------L~~----g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~-- 69 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQ---------INR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQY-- 69 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHH---------HTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEE--
T ss_pred CHHHHHHHHcCCCHHHHHHH---------Hcc----CCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeeccc--
Confidence 57778888888887766543 334 489999999998 89 99999999999999999987521
Q ss_pred CCCccccccccchhchhhh
Q 017777 99 PDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 99 ~~g~~~~~y~~t~~~~~l~ 117 (366)
...+..-.|.+|+.+..+.
T Consensus 70 ~~~p~~veY~LT~~G~~L~ 88 (102)
T d2fswa1 70 PEVPPRVEYSLTPLGEKVL 88 (102)
T ss_dssp CSSSCEEEEEECHHHHTTH
T ss_pred CCCCCeehhhhhHhHHHHH
Confidence 1111123599999887665
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.75 E-value=0.92 Score=38.23 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCCCCeEEEEeCCccHHHHHHHHhC-CCCeEEEecc-hhHHhhCCC------CCCceEEEccCCC
Q 017777 199 FEGLNSVVDVGGGIGATLNMIISKY-PSIKGINFDL-PHVIQDAPA------FPGVEHVGGDMFV 255 (366)
Q Consensus 199 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~ 255 (366)
...+.+|||+.+|.|.=+..++... ++.+++.+|. +.-++..++ ..++.+...|...
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 4567889999999999888887664 4567888886 443433322 2578888888654
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=86.51 E-value=0.19 Score=36.14 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccccCC
Q 017777 21 NLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLRNLP 99 (366)
Q Consensus 21 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 99 (366)
....++++.+-|...+|.. |.. ||....||.+.+ ++ ++..|.+-|+.|+..|+|++... .
T Consensus 14 v~~~l~~ig~kW~l~Il~~---------L~~----g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~--~ 74 (114)
T d1yyva1 14 SREVLKHVTSRWGVLILVA---------LRD----GTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSY--P 74 (114)
T ss_dssp HHHHHHHHHSHHHHHHHHH---------GGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEE--C
T ss_pred HHHHHHHHcCCCHHHHHHH---------Hhc----CCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhccc--C
Confidence 5667788877777765543 344 589999999999 79 99999999999999999987521 1
Q ss_pred CCccccccccchhchhhhc
Q 017777 100 DGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 100 ~g~~~~~y~~t~~~~~l~~ 118 (366)
..+..-.|.+|+.+..|..
T Consensus 75 ~~p~~veY~LT~~G~~L~~ 93 (114)
T d1yyva1 75 VVPPHVEYSLTPLGEQVSD 93 (114)
T ss_dssp SSSCEEEEEECHHHHHHHH
T ss_pred CCCchhHhHhhHhHHHHHH
Confidence 1111245999999887763
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=86.29 E-value=0.29 Score=34.79 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHhhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcccccccccc
Q 017777 18 EEANLLAMQLTSASVLPMVLKSAIELDLLEIIAKAGPDAFMSPKDIASQL-PTKNPDAHTVLDRILRLLASYSVLNCSLR 96 (366)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 96 (366)
.-+++..++++.+-|...+|. .|.. |+....||.+.+ ++ ++..|.+=|+.|+..|+|.+..
T Consensus 6 ~c~i~~al~iig~kW~~~Il~---------~L~~----g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~- 67 (108)
T d1z7ua1 6 QTSINLALSTINGKWKLSLMD---------ELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRES- 67 (108)
T ss_dssp HHHHHHHHHTTCSTTHHHHHH---------HHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEE-
T ss_pred CCcHHHHHHHHcCCCHHHHHH---------HHHc----CCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeec-
Confidence 346677777777777766554 3444 489999999998 69 9999999999999999998742
Q ss_pred cCCCCccccccccchhchhhhc
Q 017777 97 NLPDGKVERLYGLAPVCKFLTK 118 (366)
Q Consensus 97 ~~~~g~~~~~y~~t~~~~~l~~ 118 (366)
. ...+..-.|.+|+.+..+..
T Consensus 68 ~-~~~p~~veY~LT~~G~~L~p 88 (108)
T d1z7ua1 68 F-NELPPRVEYTLTPEGYALYD 88 (108)
T ss_dssp E-CCSSCEEEEEECHHHHHHHH
T ss_pred c-CCCcceehhhhchhHHHHHH
Confidence 1 11111234999999887763
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=86.05 E-value=0.4 Score=31.15 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=31.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNC 93 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 93 (366)
-|-|+.|||+.+|++ ++..+.+.|..|+..|+|++
T Consensus 23 ~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r 57 (71)
T d1jhfa1 23 MPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEI 57 (71)
T ss_dssp SCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeec
Confidence 588999999999982 46678999999999999997
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=85.10 E-value=0.25 Score=36.09 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=48.3
Q ss_pred HhhChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccccccCCCCccccccccchhchhhh
Q 017777 41 IELDLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCSLRNLPDGKVERLYGLAPVCKFLT 117 (366)
Q Consensus 41 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~t~~~~~l~ 117 (366)
.++.++..|...+ +++.|..+||+.+++ +...+.+.++-|+..|+|++.. .+.|+. .-...+|+.++.+.
T Consensus 34 ~q~~vL~~l~~~~-~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~-~~~D~R-~v~i~LT~~G~~~~ 103 (125)
T d1p4xa2 34 VEFTILAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQDHA 103 (125)
T ss_dssp HHHHHHHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHcc-CCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeee-cCCCCC-eEEEEECHHHHHHH
Confidence 3445667775421 247899999999999 9999999999999999998752 122211 12366666665443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.70 E-value=3.2 Score=31.68 Aligned_cols=95 Identities=16% Similarity=0.047 Sum_probs=56.9
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEc-cCCCC--------CCCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGG-DMFVS--------VPKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-D~~~~--------~~~~-D~i~~~ 266 (366)
.+...+||=+|||. |..+..+++.....+++++|. ++-++.+++..--.++.. |.... .+.+ |+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 66788999999984 556666777766678999997 777777776533333321 11111 1233 766643
Q ss_pred cccccCChHHHHHHHHHHHHhC-CCCcEEEEEcccc
Q 017777 267 WICHDWSDEHCVKFLKNCYEAL-PVNGKVIVAESIL 301 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L-~pgG~lli~e~~~ 301 (366)
..- . ..+......+ +++|+++++-...
T Consensus 107 ~g~-----~---~~~~~a~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 107 IGH-----L---ETMIDALASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp SCC-----H---HHHHHHHTTSCTTTCEEEECSCCC
T ss_pred CCc-----h---HHHHHHHHHhhcCCeEEEEEEccc
Confidence 221 1 3344444455 5559999876543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=83.50 E-value=6.4 Score=29.58 Aligned_cols=92 Identities=14% Similarity=0.026 Sum_probs=55.6
Q ss_pred CCCCCeEEEEeCCc-cHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEc-cCCCC--------CCCC-CEEEec
Q 017777 199 FEGLNSVVDVGGGI-GATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGG-DMFVS--------VPKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-D~~~~--------~~~~-D~i~~~ 266 (366)
.++..+||=+|+|. |..+..+++.....+++..|. ++-.+.+++..-..++.. +..+. .+.+ |+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 67788999998864 446666777777778999997 555666655433333322 21111 1234 887764
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCc-EEEEEc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNG-KVIVAE 298 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG-~lli~e 298 (366)
..-. ..++.....++++| .+++.-
T Consensus 106 ~G~~--------~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 106 IGRL--------DTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp SCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred CCch--------hHHHHHHHHHhcCCcceEEec
Confidence 3332 44666777888875 555443
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.41 E-value=0.37 Score=32.58 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=38.1
Q ss_pred ChHHHHhhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 44 DLLEIIAKAGPDAFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 44 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
.|++.|.+.+ +-+|=++||+.+|+ ...-+|+.|..|...|+++..
T Consensus 22 ~v~~~L~~~~--~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~ 66 (88)
T d1q1ha_ 22 DVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (88)
T ss_dssp HHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHhcc--CcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEE
Confidence 4777776432 36899999999999 999999999999999999764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=81.28 E-value=4.9 Score=30.15 Aligned_cols=94 Identities=21% Similarity=0.178 Sum_probs=57.5
Q ss_pred CCCCCeEEEEeCC-ccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCC-CC--------CCCC-CEEEec
Q 017777 199 FEGLNSVVDVGGG-IGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMF-VS--------VPKG-DAIFIK 266 (366)
Q Consensus 199 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~-~~--------~~~~-D~i~~~ 266 (366)
.++..+||=+||| .|.++..+++.....++++.|. ++-.+.+++..--.++..+-. ++ .+.+ |+++-.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 6777888888887 4556677777776667888886 555666654432333322111 11 1233 887753
Q ss_pred cccccCChHHHHHHHHHHHHhCCCCcEEEEEccc
Q 017777 267 WICHDWSDEHCVKFLKNCYEALPVNGKVIVAESI 300 (366)
Q Consensus 267 ~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~~ 300 (366)
-- . ...++.+...+++||.++++-..
T Consensus 106 ~G-----~---~~~~~~~~~~~~~g~~~~~v~~~ 131 (176)
T d2fzwa2 106 IG-----N---VKVMRAALEACHKGWGVSVVVGV 131 (176)
T ss_dssp SC-----C---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CC-----C---HHHHHHHHHhhcCCceeEEEEee
Confidence 21 1 25678888999999877765443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.64 E-value=1.6 Score=33.33 Aligned_cols=89 Identities=22% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCCCCeEEEEeC--CccHHHHHHHHhCCCCeEEEecc-hhHHhhCCCCCCceEEEccCCC-C---------CCCC-CEEE
Q 017777 199 FEGLNSVVDVGG--GIGATLNMIISKYPSIKGINFDL-PHVIQDAPAFPGVEHVGGDMFV-S---------VPKG-DAIF 264 (366)
Q Consensus 199 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~---------~~~~-D~i~ 264 (366)
+.+..+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++..--.++ |..+ + -+.+ |+++
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVF--NHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEE--ETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCccccc--ccccccHHHHhhhhhccCCceEEe
Confidence 667889999985 5778888888776 467777764 5555665544222222 2222 1 1233 7776
Q ss_pred eccccccCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 017777 265 IKWICHDWSDEHCVKFLKNCYEALPVNGKVIVAES 299 (366)
Q Consensus 265 ~~~~lh~~~~~~~~~~L~~~~~~L~pgG~lli~e~ 299 (366)
-.. . ...++...+.|+|+|+++.+-.
T Consensus 103 d~~-----g----~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 103 EML-----A----NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp ESC-----H----HHHHHHHHHHEEEEEEEEECCC
T ss_pred ecc-----c----HHHHHHHHhccCCCCEEEEEec
Confidence 531 1 1457888899999999999753
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=80.03 E-value=0.6 Score=30.87 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=32.7
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcccccccc
Q 017777 56 AFMSPKDIASQLPTKNPDAHTVLDRILRLLASYSVLNCS 94 (366)
Q Consensus 56 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 94 (366)
-|+|-+|||..+|+ .+.-+.|.|..|...|+++..
T Consensus 28 ~~lt~~eLA~~~G~----sretvsr~L~~l~~~glI~~~ 62 (81)
T d2gaua1 28 IYLSREELATLSNM----TVSNAIRTLSTFVSERMLALD 62 (81)
T ss_dssp CCCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ecCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 48899999999999 999999999999999999963
|