Citrus Sinensis ID: 017783

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MELSGIHKARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSSSSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLLF
Secondary Structure (PSIPRED)
cccccEEEccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHcccccccccHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHccccEEccccccccEEEcccccccccEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEEEEEccccccccccccHEHcccEEEccccccccEEEcccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
melsgihkarceigtekygqkqvkgsenprsyykctfpscptkkkversldGQITEIVYkgshnhpkpqstrrsssssvnsnaiqastqhsneiqdqsyathgsgqmdsaatpenssisvgdddvdqgsqksksggggagggddfdedepeakrwkiegesegisapgsrtvreprvvvqttsdidilddgyrwrKYGQkvvkgnpnprsyykcthpgcpvrkhverASHDLRAVITTYegkhnhdvpaargsgsralpdnssnnnhnsnsnsnnngtlpvrasavahhpnnnsilnpvhnlrvsssegqapytlemlqgsgsfgfpgygNALRSYMNEGQQQDNVLSrakeeprdhdtffesllf
Flexible Loop (DISEMBL)
melsgihkarceigtekygqkqvkgsenprsyykctfpscptkkkveRSLDGQITEIvykgshnhpkpqstrrsssssvNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKsksggggagggddfdeDEPEAKRwkiegesegisapgsrtvreprvvvqttsdidilddgyrwRKYGQKvvkgnpnprsyykCTHPGCPVRKHVERASHDLRAVITtyegkhnhdvpaaRGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSrakeeprdhdtffesllf
Low Complexity Region (SEG)
MELSGIHKARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPqstrrsssssvnsnaiqasTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVdqgsqksksggggagggddFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDnssnnnhnsnsnsnnnGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLLF
Disordered region (IsUnstruct)
*******************************YYKCTFPSC*************ITEIVY*********************************************************************************************************************VVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYE***********************************************************************************FGFPGYG************************************
Disordered Region (DISOPRED)
******H*ARCEIGTEKYGQK*****ENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSSSSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWK********************VVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH*****************************************************************************************************************TFFESLLF
Disordered Region (DISEMBL)
MELSGIHKARCEIGTE***********NPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGS*******************************IQDQS*****************************************************AKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLLF
Disordered Region (DISPRO)
********ARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHN***********************************************************************************************************VREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKH*******************************************************************************************************************TFFE**LF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELSGIHKARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSSSSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q8S8P5	519	Probable WRKY transcripti	yes	no	0.863	0.608	0.556	1e-91
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.672	0.479	0.535	2e-67
Q93WV0	557	Probable WRKY transcripti	no	no	0.800	0.526	0.462	9e-66
Q9XI90	514	Probable WRKY transcripti	no	no	0.606	0.431	0.539	1e-64
Q9FG77	687	Probable WRKY transcripti	no	no	0.639	0.340	0.546	2e-64
Q9C5T3	309	Probable WRKY transcripti	no	no	0.469	0.556	0.572	7e-64
O22921	393	Probable WRKY transcripti	no	no	0.590	0.549	0.568	1e-63
O65590	568	Probable WRKY transcripti	no	no	0.661	0.426	0.491	2e-57
Q93WU7	423	Probable WRKY transcripti	no	no	0.614	0.531	0.483	1e-53
Q9SI37	487	WRKY transcription factor	no	no	0.702	0.527	0.395	2e-46

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  337 bits (863), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 201/361 (55%), Positives = 239/361 (66%), Gaps = 45/361 (12%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCTFP+CPTKKKVERSL+GQITEIVYKGSHNHPKPQSTRRSSS
Sbjct: 191 KYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQSTRRSSS 250

Query: 77  SS--VNSNAIQASTQHSNEIQ-DQSYATHGSGQMDSAATPE---NSSISVGDDDVDQGSQ 130
           SS   +S    AS  H+ +   DQ  + +   Q DS    +    +S SVGDD+ +QGS 
Sbjct: 251 SSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTTSDSVGDDEFEQGSS 310

Query: 131 KSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDD 190
                    G        EPEAKRWK + E+ G +  GS+TVREPR+VVQTTSDIDILDD
Sbjct: 311 IVSRDEEDCGS-------EPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILDD 363

Query: 191 GYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 250
           GYRWRKYGQKVVKGNPNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAA
Sbjct: 364 GYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 423

Query: 251 RGSGSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQ 310
           RGSG            + +N    ++ ++P+R +A+A H N              ++  Q
Sbjct: 424 RGSG------------YATNRAPQDSSSVPIRPAAIAGHSN-------------YTTSSQ 458

Query: 311 APYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNV------LSRAKEEPRDHDTFFESL 364
           APYTL+ML  + +   P +G A+ +  N    Q          SRAKEEP +  +FF+S 
Sbjct: 459 APYTLQMLHNNNTNTGP-FGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPNEETSFFDSF 517

Query: 365 L 365
           +
Sbjct: 518 M 518

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/265 (53%), Positives = 172/265 (64%), Gaps = 19/265 (7%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGS+ PRSYYKCT P+CP KKKVERSLDGQ+TEI+YKG HNH  PQ  R +++
Sbjct: 257 KYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELPQK-RGNNN 315

Query: 77  SSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGG 136
            S  S+ I    Q SN   ++S     + Q+ +        +S   D  + G+ ++  G 
Sbjct: 316 GSCKSSDIANQFQTSNSSLNKSKRDQETSQVTTT-----EQMSEASDSEEVGNAETSVG- 369

Query: 137 GGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 196
                  +  EDEP+ KR   E       A   RTV EPR++VQTTS++D+LDDGYRWRK
Sbjct: 370 -------ERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRK 422

Query: 197 YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSR 256
           YGQKVVKGNP PRSYYKCT P C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S  +
Sbjct: 423 YGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQ 482

Query: 257 ALPDNSSNNNHNSNSNSNNNGTLPV 281
             P    NN HN+ S  N N   PV
Sbjct: 483 LRP----NNQHNT-STVNFNHQQPV 502

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  250 bits (639), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 149/322 (46%), Positives = 188/322 (58%), Gaps = 29/322 (9%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQK VKGSE PRSYYKCT P+C  KK  ERS DGQIT+I+YKG+H+HPKPQ  RR+S 
Sbjct: 218 KYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPGRRNSG 277

Query: 77  S-SVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSG 135
             +     +      +   +  S   + S   +    PE   IS  DD           G
Sbjct: 278 GMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDD-----------G 326

Query: 136 GGGAGGG---DDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGY 192
           G  A      D+ D+D+P +KR ++EG  E    P  + +REPRVVVQT S++DILDDGY
Sbjct: 327 GEAAASNRNKDEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGY 384

Query: 193 RWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARG 252
           RWRKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ 
Sbjct: 385 RWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKS 444

Query: 253 SGS-----RALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVH----NLR 303
           S +     R  PD +   + N     +++G  P  AS    H  N  ++N  H    N R
Sbjct: 445 SSNHEIQPRFRPDETDTISLNLGVGISSDG--PNHASNEHQH-QNQQLVNQTHPNGVNFR 501

Query: 304 VSSSEGQAPYTLEMLQGSGSFG 325
              +   + Y   +  G   +G
Sbjct: 502 FVHASPMSSYYASLNSGMNQYG 523

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/243 (53%), Positives = 164/243 (67%), Gaps = 21/243 (8%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRR--S 74
           KYGQKQVKGSE PRSYYKCT P CP KKKVERSLDGQ+TEI+YKG HNH  PQ+T+R   
Sbjct: 236 KYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPPQNTKRGNK 295

Query: 75  SSSSVNSNAIQASTQHSNEIQDQSYATHGSGQ--------MDSAATPENSSISVGDDDVD 126
            +++  + +   + + S+E+    + T+ S +        +  A T E+ S +   ++V 
Sbjct: 296 DNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTEHLSEASDGEEV- 354

Query: 127 QGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGE-SEGISAPGSRTVREPRVVVQTTSDI 185
                    G G     + DE+EP+ KR   E   SE   A   RTV EPR++VQTTS++
Sbjct: 355 ---------GNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEV 405

Query: 186 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 245
           D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TTYEGKHNH
Sbjct: 406 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNH 465

Query: 246 DVP 248
           D+P
Sbjct: 466 DLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  246 bits (628), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/271 (54%), Positives = 174/271 (64%), Gaps = 37/271 (13%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRS-- 74
           KYGQK VKGSE PRSYYKCT P+C  KKKVERS +G ITEI+YKG+HNH KP   RRS  
Sbjct: 280 KYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKPPPNRRSGM 339

Query: 75  -----------------SSSSVNSNAIQ------------ASTQHSNEIQDQSYATHGSG 105
                            +++ V+ N  Q             ST+     Q  S      G
Sbjct: 340 QVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGSTRFEYGNQSGSIQAQTGG 399

Query: 106 QMDS----AATPENSSISVGDDDVDQGSQKSKS-GGGGAGGGDDFDEDEPEAKRWKIEGE 160
           Q +S         +S+ S  +D+ D+G+  S S G  G GGG   + DE E+KR K+E  
Sbjct: 400 QYESGDPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESESKRRKLEAF 459

Query: 161 SEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCP 220
           +  +S   +R +REPRVVVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYYKCT PGC 
Sbjct: 460 AAEMSG-STRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCT 518

Query: 221 VRKHVERASHDLRAVITTYEGKHNHDVPAAR 251
           VRKHVERASHDL++VITTYEGKHNHDVPAAR
Sbjct: 519 VRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  244 bits (623), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 148/236 (62%), Gaps = 64/236 (27%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKPQSTRRSS 75
           KYGQKQVKGSENPRSY+KCT+P+C TKKKVE SL  GQ+ EIVYKGSHNHPKPQST+RSS
Sbjct: 124 KYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPKPQSTKRSS 183

Query: 76  SSSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSG 135
           S+++                    A H           +NSS                  
Sbjct: 184 STAI--------------------AAH-----------QNSS------------------ 194

Query: 136 GGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR 195
               G G D  EDE EAKRWK E             V+EPRVVVQTTSDIDILDDGYRWR
Sbjct: 195 ---NGDGKDIGEDETEAKRWKRE-----------ENVKEPRVVVQTTSDIDILDDGYRWR 240

Query: 196 KYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 251
           KYGQKVVKGNPNPRSYYKCT  GC VRKHVERA  D ++VITTYEGKH H +P  R
Sbjct: 241 KYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/241 (56%), Positives = 163/241 (67%), Gaps = 25/241 (10%)

Query: 14  GTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRR 73
           G  KYGQKQVK SENPRSY+KCT+P C +KK VE + DGQITEI+YKG HNHPKP+ T+R
Sbjct: 170 GWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKPEFTKR 229

Query: 74  SSSSS----VNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGS 129
            S SS    VN   +       +E  DQS               ENSSIS    D++Q S
Sbjct: 230 PSQSSLPSSVNGRRLFNPASVVSEPHDQS---------------ENSSISFDYSDLEQKS 274

Query: 130 QKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILD 189
            KS+ G          +E++PE KR K EGE EG+S   S+ V+EPRVVVQT SDID+L 
Sbjct: 275 FKSEYGEIDE------EEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLI 328

Query: 190 DGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 249
           DG+RWRKYGQKVVKGN NPRSYYKCT  GC V+K VER++ D RAV+TTYEG+HNHD+P 
Sbjct: 329 DGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPT 388

Query: 250 A 250
           A
Sbjct: 389 A 389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/287 (49%), Positives = 167/287 (58%), Gaps = 45/287 (15%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRS-- 74
           KYGQK VKGSE PRSYYKCT P+C  KKKVERS +G I EI+Y G H H KP   RRS  
Sbjct: 185 KYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKPPPNRRSGI 244

Query: 75  -SSSSVNSNAIQAST------------------------QHSNEIQDQSYATHGSGQMDS 109
            SS +     I A+                          HS  +Q Q+  TH  G  D+
Sbjct: 245 GSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSHSGSMQVQN-GTHQFGYGDA 303

Query: 110 AATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGS 169
           AA     ++   +++ D+ S  S S         D + +E E+KR K+E  +   S   +
Sbjct: 304 AA----DALYRDENEDDRTSHMSVSLTY------DGEVEESESKRRKLEAYATETSG-ST 352

Query: 170 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERAS 229
           R  REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS
Sbjct: 353 RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERAS 412

Query: 230 HDLRAVITTYEGKHNHDVPAAR-----GSGSR-ALPDNSSNNNHNSN 270
            D ++V+TTY GKH H VPAAR     G+GS   L  + +   HN N
Sbjct: 413 DDFKSVLTTYIGKHTHVVPAARNSSHVGAGSSGTLQGSLATQTHNHN 459

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/279 (48%), Positives = 161/279 (57%), Gaps = 54/279 (19%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQK +KG E PRSYYKCT  +CP KKKVERS DGQIT+I+YKG H+H +PQ+ R    
Sbjct: 174 KYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHERPQNRRGGGG 233

Query: 77  SSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGG 136
                       + S E+        G+GQM  ++              D G +K     
Sbjct: 234 ------------RDSTEVG-------GAGQMMESSD-------------DSGYRKDHDDD 261

Query: 137 GGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 196
                 D   ED P +K  +I+G S        RTV EP+++VQT S++D+LDDGYRWRK
Sbjct: 262 DDDDEDD---EDLPASKIRRIDGVSTT-----HRTVTEPKIIVQTKSEVDLLDDGYRWRK 313

Query: 197 YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARG---- 252
           YGQKVVKGNP+PRSYYKCT P C VRKHVERAS D +AVITTYEGKHNHDVPAAR     
Sbjct: 314 YGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAA 373

Query: 253 --------SGSRALPDNSSNN--NHNSNSNSNNNGTLPV 281
                   S    +   S NN   H S  N+NN G  PV
Sbjct: 374 ATAAAVGPSDHHRMRSMSGNNMQQHMSFGNNNNTGQSPV 412

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 152/286 (53%), Gaps = 29/286 (10%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQK VKG+E  RSYY+CT P+C  KK++ERS  GQ+ + VY G H+HPKP +     +
Sbjct: 118 KYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPLAGAVPIN 177

Query: 77  SSVNSNAIQASTQHSNEIQ-------------DQSYATHGSG---QMDSAATPEN----- 115
               S+   A ++    I              D  +    SG   Q      P       
Sbjct: 178 QDKRSDVFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPPKIHGGL 237

Query: 116 --SSISVGDDDVDQGSQKSKSGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVR 173
             S I   DD     SQ S+  G         D + P AKR K  G  E   +P  R+  
Sbjct: 238 HVSVIPPADDVKTDISQSSRITGDNTHK----DYNSPTAKRRKKGGNIE--LSPVERSTN 291

Query: 174 EPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLR 233
           + R+VV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD +
Sbjct: 292 DSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTK 351

Query: 234 AVITTYEGKHNHDVPAARGSGSRALPDNSSNNNHNSNSNSNNNGTL 279
            +ITTYEGKH+HD+P  R      + D+  ++     + +  + TL
Sbjct: 352 LLITTYEGKHDHDMPPGRVVTHNNMLDSEVDDKEGDANKTPQSSTL 397

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
356553124	575	PREDICTED: probable WRKY transcription f	0.896	0.570	0.723	1e-137
183979108	603	DNA-binding protein [Vitis thunbergii]	0.926	0.562	0.714	1e-134
225434421	603	PREDICTED: probable WRKY transcription f	0.926	0.562	0.714	1e-134
356500910	580	PREDICTED: probable WRKY transcription f	0.896	0.565	0.728	1e-134
302399121	571	WRKY domain class transcription factor [	0.882	0.565	0.690	1e-132
259121367	595	WRKY transcription factor 1 [(Populus to	0.874	0.537	0.730	1e-132
449439187	576	PREDICTED: probable WRKY transcription f	0.901	0.572	0.704	1e-130
224146673	603	predicted protein [Populus trichocarpa]	0.893	0.542	0.730	1e-128
359801453	595	WRKY transcription factor 1 [(Populus to	0.874	0.537	0.739	1e-128
151934197	329	WRKY39 [Glycine max]	0.874	0.972	0.722	1e-128

>gi|356553124|ref|XP_003544908.1| PREDICTED: probable WRKY transcription factor 33 [Glycine max]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/355 (72%), Positives = 286/355 (80%), Gaps = 27/355 (7%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCT+P+CPTKKKVERSLDGQITEIVYKG+HNHPKPQ+TRR+SS
Sbjct: 241 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSS 300

Query: 77  SSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGG 136
           +S +  AI  S     EI DQSYATHGSGQMDSAATPENSSIS+GDDD +Q SQK KSGG
Sbjct: 301 NSSSL-AIPHSNSIRTEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGG 359

Query: 137 GGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 196
                 D++DEDEP+AKRWKIEGE+EG+SAPGSRTVREPRVVVQTTSDIDILDDGYRWRK
Sbjct: 360 ------DEYDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 413

Query: 197 YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS- 255
           YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 
Sbjct: 414 YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSH 473

Query: 256 ---RALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSS-SEGQA 311
              R +P+N+SN+         N     VR   V H  +N+     + N R  +  EGQ+
Sbjct: 474 SVNRPMPNNASNH--------TNTAATSVRLLPVIHQSDNS-----LQNQRSQAPPEGQS 520

Query: 312 PYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVL-SRAKEEPRDHDTFFESLL 365
           P+TLEMLQ  GSFGF G+GN ++SY+N+ Q  DNV  SR KEEPRD D F ESLL
Sbjct: 521 PFTLEMLQSPGSFGFSGFGNPMQSYVNQQQLSDNVFSSRTKEEPRD-DMFLESLL 574

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183979108|emb|CAP08303.1| DNA-binding protein [Vitis thunbergii]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/350 (71%), Positives = 283/350 (80%), Gaps = 11/350 (3%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCT+P+CPTKKKVERSL+GQ+TEIVYKG+HNHPKPQST    S
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQST--RRS 320

Query: 77  SSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGG 136
           S  +S  IQAS   +NE+ DQ +  HG+GQMDS ATPENSSIS+GDDD +Q SQKSKSGG
Sbjct: 321 SLSSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDFEQSSQKSKSGG 380

Query: 137 GGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 196
                 DDFDEDEPEAKRWK E E+EGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK
Sbjct: 381 ------DDFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 434

Query: 197 YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSR 256
           YGQKVVKGNPNPRSYYKCT+PGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 
Sbjct: 435 YGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSH 494

Query: 257 ALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQ-APYTL 315
           ++       +  + + +NNN  + +R S + H P NNS  NP+ ++R  +SE Q AP+TL
Sbjct: 495 SVNRPLPLPDTTAAATTNNNMPMAIRPSTMTHLP-NNSTTNPLRHVRHPTSEAQAAPFTL 553

Query: 316 EMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLL 365
           EMLQ    FGF  +GN++ +YMN+ Q QDNV SR KEEPRD D  FESLL
Sbjct: 554 EMLQSPDGFGFSNFGNSMATYMNQPQHQDNVFSRTKEEPRD-DMLFESLL 602

Source: Vitis thunbergii

Species: Vitis thunbergii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434421|ref|XP_002272040.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/350 (71%), Positives = 283/350 (80%), Gaps = 11/350 (3%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCT+P+CPTKKKVERSL+GQ+TEIVYKG+HNHPKPQST    S
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQST--RRS 320

Query: 77  SSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGG 136
           S  +S  IQAS   +NE+ DQ +  HG+GQMDS ATPENSSIS+GDDD +Q SQKSKSGG
Sbjct: 321 SLSSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDFEQSSQKSKSGG 380

Query: 137 GGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 196
                 DDFDEDEPEAKRWK E E+EGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK
Sbjct: 381 ------DDFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 434

Query: 197 YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSR 256
           YGQKVVKGNPNPRSYYKCT+PGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 
Sbjct: 435 YGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSH 494

Query: 257 ALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQ-APYTL 315
           ++       +  + + +NNN  + +R S + H P NNS  NP+ ++R  +SE Q AP+TL
Sbjct: 495 SVNRPLPLPDTTAAATTNNNMPMAIRPSIMTHLP-NNSTTNPLRHVRHPTSEAQAAPFTL 553

Query: 316 EMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLL 365
           EMLQ    FGF  +GN++ +YMN+ Q QDNV SR KEEPRD D  FESLL
Sbjct: 554 EMLQSPDGFGFSSFGNSMATYMNQPQHQDNVFSRTKEEPRD-DMLFESLL 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500910|ref|XP_003519273.1| PREDICTED: probable WRKY transcription factor 33 [Glycine max]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/357 (72%), Positives = 287/357 (80%), Gaps = 29/357 (8%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCT+P+CPTKKKVERSLDGQITEIVYKG+HNHPKPQ+TRR+SS
Sbjct: 244 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSS 303

Query: 77  SSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGG 136
           +S +  AI  S   S EI DQSYATHGSGQMDSAATPENSSIS+GDDD +Q SQK KSGG
Sbjct: 304 NSSSL-AIPHSNPISAEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGG 362

Query: 137 GGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 196
                 D++DEDEP+AKRWKIEGE+EG+SAPGSRTVREPRVVVQTTSDIDILDDGYRWRK
Sbjct: 363 ------DEYDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRK 416

Query: 197 YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS- 255
           YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 
Sbjct: 417 YGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSH 476

Query: 256 ---RALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSS-SEGQA 311
              R +P+N+        SN  N     +    V  H +N+       N R  +  EGQ+
Sbjct: 477 SVNRPMPNNA--------SNPTNTAATAISPLQVIQHSDNSH-----QNQRSQAPPEGQS 523

Query: 312 PYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQ--DNVL-SRAKEEPRDHDTFFESLL 365
           P+TLEMLQ  GSFGF G+GN ++SYMN+ QQQ  DNV  SRAKEEPRD D F ESLL
Sbjct: 524 PFTLEMLQSPGSFGFSGFGNPMQSYMNQQQQQLSDNVFSSRAKEEPRD-DMFLESLL 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399121|gb|ADL36855.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/359 (69%), Positives = 284/359 (79%), Gaps = 36/359 (10%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCT+P+CPTKKKVERSLDGQITEIVYKG+HNHPKPQ+ R+SSS
Sbjct: 238 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGNHNHPKPQNPRKSSS 297

Query: 77  SSVNSNAIQA-STQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSG 135
              NS+AI A +  ++NEI DQ+YA HG+ QMDS  TPE+SSIS+GDDD +Q SQ+SKSG
Sbjct: 298 ---NSHAIHALNPTNTNEIPDQTYANHGNSQMDSIGTPEHSSISIGDDDFEQSSQRSKSG 354

Query: 136 GGGAGGGDDFDEDEPEAKRWKIEGE-SEGISAPGSRTVREPRVVVQTTSDIDILDDGYRW 194
           GG     ++FDEDEP AKRWK E + +EGISAPG+RTVREPRVVVQTTSDIDILDDGYRW
Sbjct: 355 GG-----EEFDEDEPNAKRWKNEADHNEGISAPGNRTVREPRVVVQTTSDIDILDDGYRW 409

Query: 195 RKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSG 254
           RKYGQKVVKGNPNPRSYYKCT+PGCPVRKHVERASHD+RAVITTYEGKHNHDVPAARGSG
Sbjct: 410 RKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDIRAVITTYEGKHNHDVPAARGSG 469

Query: 255 SRALPDNSSNNNHNSNSNSNNNGTLPVRASAVA-------HHPNNNSILNPVHNLRVSSS 307
           S A                  N  +P   + VA       HH NN++  N V NLR  +S
Sbjct: 470 SHAAV----------------NRPIPNNNNNVASAMRPITHHTNNSANTNSVQNLRQPTS 513

Query: 308 EGQAPYTLEMLQGSGSFGFPGY-GNALRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLL 365
           EGQAP++LEMLQ  GS+GF G+ GN++ SYMN+ Q  D + S+AKEEPRD D FFESLL
Sbjct: 514 EGQAPFSLEMLQSPGSYGFVGFDGNSVGSYMNQTQLSD-IFSKAKEEPRD-DAFFESLL 570

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121367|gb|ACV92003.1| WRKY transcription factor 1 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/341 (73%), Positives = 278/341 (81%), Gaps = 21/341 (6%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCTFP+CPTKKKVERSLDGQITE+VYKGSHNHPKPQSTRR+SS
Sbjct: 265 KYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEMVYKGSHNHPKPQSTRRTSS 324

Query: 77  SSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSA-ATPENSSISVGDDDVDQGSQKSKSG 135
           +  N   I A   +SNEIQD+S+ THG+GQMDS+ ATP+NSSIS+GDDD D  SQKSKS 
Sbjct: 325 TGSNPAMIPAPNSNSNEIQDRSFVTHGNGQMDSSVATPDNSSISMGDDDFD--SQKSKSV 382

Query: 136 GGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR 195
           GG     DD DEDEP+AKRWK E E+EGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR
Sbjct: 383 GG-----DDLDEDEPDAKRWKRERENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR 437

Query: 196 KYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 255
           KYGQKVVKGNPNPRSYYKCT  GCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS
Sbjct: 438 KYGQKVVKGNPNPRSYYKCTFQGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 497

Query: 256 RALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLR---VSSSEGQAP 312
           R+L D+S+N N+N+   +        R S V +H +NN + NP+ N R    ++SEG  P
Sbjct: 498 RSLQDHSNNGNNNAAMAT--------RPSTV-NHVSNNPVNNPIRNQRAPPTATSEGDMP 548

Query: 313 YTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEE 353
           +TLEMLQ  GSFGF G+GN + SYMN+    D VLSRAK E
Sbjct: 549 FTLEMLQSPGSFGFSGFGNLMGSYMNQS-STDEVLSRAKRE 588

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439187|ref|XP_004137368.1| PREDICTED: probable WRKY transcription factor 33-like [Cucumis sativus] gi|449520551|ref|XP_004167297.1| PREDICTED: probable WRKY transcription factor 33-like [Cucumis sativus] gi|324106110|gb|ADY18304.1| WRKYP2 [Cucumis sativus]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/355 (70%), Positives = 277/355 (78%), Gaps = 25/355 (7%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCTFP+CPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSS 
Sbjct: 240 KYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSL 299

Query: 77  SSVNS-NAIQASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSG 135
           SS  S  AI A  Q +NE+ DQS+ T GSGQ D  ATPENSSIS+GD+D D+ SQKSKSG
Sbjct: 300 SSAGSSQAIVALNQAANEMADQSFTTQGSGQFDGVATPENSSISIGDEDFDRSSQKSKSG 359

Query: 136 GGGAGGGDDFDEDEPEAKRWKIEGES-EGISAPGSRTVREPRVVVQTTSDIDILDDGYRW 194
           G      DDFDE+EPEAKRW+ EG++ EGISA GSRTVREPRVVVQTTSDIDILDDGYRW
Sbjct: 360 G------DDFDEEEPEAKRWRREGDNNEGISAAGSRTVREPRVVVQTTSDIDILDDGYRW 413

Query: 195 RKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSG 254
           RKYGQKVVKGNPNPRSYYKCT+PGCPVRKHVERASHDLRAVITTYEGKHNHDVP ARGSG
Sbjct: 414 RKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSG 473

Query: 255 SRALPDNSSNNNHNSNSNSNNNGTLPVR-ASAVAHHPNNNSILNPVHNLRVS-SSEGQAP 312
           S +L          S    NN     +R  S V HH NN    +P   LR+  SS+ QA 
Sbjct: 474 SHSL----------SRPFPNNEPPAAIRPLSVVTHHSNNGG--HP-QGLRLQRSSDSQAA 520

Query: 313 YTLEMLQGSGSFGFPGYGNA--LRSYMNEGQQQDNVLSRAKEEPRDHDTFFESLL 365
           +T+EM+Q    F FP +GN+  + SYMN+ Q  DN+ +RAKEEPRDHD F +SLL
Sbjct: 521 FTVEMVQNGNGFSFPEFGNSMGMGSYMNQTQPNDNLFTRAKEEPRDHDMFIQSLL 575

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146673|ref|XP_002326093.1| predicted protein [Populus trichocarpa] gi|222862968|gb|EEF00475.1| predicted protein [Populus trichocarpa]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/342 (73%), Positives = 287/342 (83%), Gaps = 15/342 (4%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCT+P+CPTKK +ERSL+GQ+TEIVYKGSHNHPKPQSTRRSSS
Sbjct: 265 KYGQKQVKGSENPRSYYKCTYPNCPTKKILERSLEGQVTEIVYKGSHNHPKPQSTRRSSS 324

Query: 77  SSVNSN--AIQASTQHSNEIQDQSYATHGSGQMDSA-ATPENSSISVGDDDVDQGSQKSK 133
           S+  SN   I A   + NEIQ+QSY THGSGQMDS+ ATPENSSIS+GDDD D  SQ+S+
Sbjct: 325 STTASNLGMIPAPNSNPNEIQEQSYVTHGSGQMDSSVATPENSSISIGDDDFD--SQRSR 382

Query: 134 SGGGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYR 193
           SGGG     DDFDEDEPEAKRWK EG++EGISAPGS+ VREPRVVVQTTSDIDILDDGYR
Sbjct: 383 SGGG-----DDFDEDEPEAKRWKREGDNEGISAPGSKAVREPRVVVQTTSDIDILDDGYR 437

Query: 194 WRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 253
           WRKYGQKVVKGNPNPRSYYKCT+ GCPVRKHVERASHDLRAVITTYEGKHNHDVPAARG+
Sbjct: 438 WRKYGQKVVKGNPNPRSYYKCTYQGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGT 497

Query: 254 GSRALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRV--SSSEGQA 311
           GSR+LP +++ N +N+ +N++N+  + +R SAV +H  NNSI NPV + RV  ++SEG  
Sbjct: 498 GSRSLPGHNN-NGNNNGNNNSNHAVMAIRPSAV-NHVFNNSINNPVRDQRVPTTTSEGNM 555

Query: 312 PYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEE 353
           P+TLEMLQ  GSFGF G+GN +  YMN+    D V SRAK E
Sbjct: 556 PFTLEMLQSPGSFGFSGFGNLMGPYMNQS-STDEVFSRAKRE 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359801453|gb|AEV66272.1| WRKY transcription factor 1 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/341 (73%), Positives = 277/341 (81%), Gaps = 21/341 (6%)

Query: 17  KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 76
           KYGQKQVKGSENPRSYYKCTFP+CPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS
Sbjct: 265 KYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS 324

Query: 77  SSVNSNAIQASTQHSNEIQDQSYATHGSGQMDSA-ATPENSSISVGDDDVDQGSQKSKSG 135
           +  N   I A   +SNEIQDQSY THG+GQMDS+ ATP+NSSIS+GDDD D  SQKSKS 
Sbjct: 325 TGSNPAMIPAPNSNSNEIQDQSYVTHGNGQMDSSVATPDNSSISIGDDDFD--SQKSKSV 382

Query: 136 GGGAGGGDDFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR 195
           GG     DD DEDEP+AKR K E E+EGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR
Sbjct: 383 GG-----DDLDEDEPDAKRLKRERENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR 437

Query: 196 KYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 255
           KYGQKVVKGNPNPRSYYKCT  GCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS
Sbjct: 438 KYGQKVVKGNPNPRSYYKCTFQGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 497

Query: 256 RALPDNSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLR---VSSSEGQAP 312
           R+L D+S+N N+N+   +        R S V +H +NN + NP+ N R    ++SEG  P
Sbjct: 498 RSLQDHSNNGNNNAAMAT--------RPSTV-NHVSNNPVNNPIRNQRAPPTATSEGDMP 548

Query: 313 YTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDNVLSRAKEE 353
           +TLEMLQ  GSFGF G+GN + SYMN+    D VLSRAK E
Sbjct: 549 FTLEMLQSPGSFGFSGFGNLMGSYMNQS-STDEVLSRAKRE 588

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151934197|gb|ABS18436.1| WRKY39 [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/349 (72%), Positives = 279/349 (79%), Gaps = 29/349 (8%)

Query: 25  GSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSSSSVNSNAI 84
           GSENPRSYYKCT+P+CPTKKKVERSLDGQITEIVYKG+HNHPKPQ+TRR+SS+S +  AI
Sbjct: 1   GSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSNSSSL-AI 59

Query: 85  QASTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVDQGSQKSKSGGGGAGGGDD 144
             S   S EI DQSYATHGSGQMDSAATPENSSIS+GDDD +Q SQK KSGG      D+
Sbjct: 60  PHSNPISAEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGG------DE 113

Query: 145 FDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKG 204
           +DEDEP+AKRWKIEGE+EG+SAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKG
Sbjct: 114 YDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKG 173

Query: 205 NPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS----RALPD 260
           NPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS    R +P+
Sbjct: 174 NPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPMPN 233

Query: 261 NSSNNNHNSNSNSNNNGTLPVRASAVAHHPNNNSILNPVHNLRVSS-SEGQAPYTLEMLQ 319
           N+        SN  N     +    V  H +N+       N R  +  EGQ+P+TLEMLQ
Sbjct: 234 NA--------SNPTNTAATAISPLQVIQHSDNSH-----QNQRSQAPPEGQSPFTLEMLQ 280

Query: 320 GSGSFGFPGYGNALRSYMNEGQQQ--DNVL-SRAKEEPRDHDTFFESLL 365
             GSFGF G+GN ++SYMN+ QQQ  DNV  SRAKEEPRD D F ESLL
Sbjct: 281 SPGSFGFSGFGNPMQSYMNQQQQQLSDNVFSSRAKEEPRD-DMFLESLL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.846	0.597	0.489	7.1e-77
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.431	0.229	0.568	7.9e-64
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.808	0.531	0.435	2.7e-61
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.653	0.464	0.520	1.5e-60
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.286	0.267	0.695	3.8e-60
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.625	0.446	0.530	1e-59
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.256	0.304	0.723	4.2e-59
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.297	0.257	0.678	3.8e-58
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.644	0.415	0.486	2.1e-52
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.284	0.213	0.584	8.7e-49

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 165/337 (48%), Positives = 200/337 (59%)

Query:    17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXX 76
             KYGQKQVKGSENPRSYYKCTFP+CPTKKKVERSL+GQITEIVYKGSHNHPKP        
Sbjct:   191 KYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQSTRRSSS 250

Query:    77 XXXXXXXXX--XXTQHSNEIQ-DQSYATHGSGQMDSAATPEN---SSISVGDDDVXXXXX 130
                            H+ +   DQ  + +   Q DS    +    +S SVGDD+      
Sbjct:   251 SSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTTSDSVGDDEFEQGSS 310

Query:   131 XXXXXXXXXXXXXXFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDD 190
                               EPEAKRWK + E+ G +  GS+TVREPR+VVQTTSDIDILDD
Sbjct:   311 IVSRDEEDCGS-------EPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILDD 363

Query:   191 GYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 250
             GYRWRKYGQKVVKGNPNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAA
Sbjct:   364 GYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 423

Query:   251 RGSGSRALPDXXXXXXXXXXXXXXXXGTLPVRASAVAHHPNNNSILNPVHNLRV--SSSE 308
             RGSG                       ++P+R +A+A H N  +     + L++  +++ 
Sbjct:   424 RGSG------------YATNRAPQDSSSVPIRPAAIAGHSNYTTSSQAPYTLQMLHNNNT 471

Query:   309 GQAPYTLEMLQGSGSFGFPGYGNALRSYMNEGQQQDN 345
                P+   M   + +       N +    +  +++ N
Sbjct:   472 NTGPFGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPN 508

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 7.9e-64, Sum P(2) = 7.9e-64
 Identities = 95/167 (56%), Positives = 112/167 (67%)

Query:    91 SNEIQDQSYATHGSGQ----MDSAATPENSSISVGDDDVXXXXXXXXXXXXXXXXXXXFD 146
             S  IQ Q+   + SG     +D+++T  N      D+D                     +
Sbjct:   390 SGSIQAQTGGQYESGDPVVVVDASSTFSNDE----DEDDRGTHGSVSLGYDGGGGGGGGE 445

Query:   147 EDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP 206
              DE E+KR K+E  +  +S   +R +REPRVVVQTTSD+DILDDGYRWRKYGQKVVKGNP
Sbjct:   446 GDESESKRRKLEAFAAEMSG-STRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNP 504

Query:   207 NPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 253
             NPRSYYKCT PGC VRKHVERASHDL++VITTYEGKHNHDVPAAR S
Sbjct:   505 NPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNS 551

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 139/319 (43%), Positives = 170/319 (53%)

Query:    17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXX 76
             KYGQK VKGSE PRSYYKCT P+C  KK  ERS DGQIT+I+YKG+H+HPKP        
Sbjct:   218 KYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPGRRNSG 277

Query:    77 XXXXXXXXXXXTQHSNEIQDQSYATHG-SGQMDSAATPENSSISVGDDDVXXXXXXXXXX 135
                           S    ++    +  S   +    PE   IS  DD            
Sbjct:   278 GMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEAAASNRNKD 337

Query:   136 XXXXXXXXXFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR 195
                       D+D+P +KR ++EG  E    P  + +REPRVVVQT S++DILDDGYRWR
Sbjct:   338 EP--------DDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRWR 387

Query:   196 KYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 255
             KYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ S +
Sbjct:   388 KYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSSN 447

Query:   256 RAL-----PDXXXXXXXXXXXXXXXXGTLPVRASAVAHHPNNNSILNPVH----NLRVSS 306
               +     PD                G  P  AS   H   N  ++N  H    N R   
Sbjct:   448 HEIQPRFRPDETDTISLNLGVGISSDG--PNHASN-EHQHQNQQLVNQTHPNGVNFRFVH 504

Query:   307 SEGQAPYTLEMLQGSGSFG 325
             +   + Y   +  G   +G
Sbjct:   505 ASPMSSYYASLNSGMNQYG 523

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 127/244 (52%), Positives = 150/244 (61%)

Query:    17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXX 76
             KYGQKQVKGSE PRSYYKCT P CP KKKVERSLDGQ+TEI+YKG HNH  P        
Sbjct:   236 KYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPPQNTKRGNK 295

Query:    77 XXXXXXXXXXXTQH--SNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVXXXXXXXXX 134
                          +  S+E+    + T+ S +       E  S +   + +         
Sbjct:   296 DNTANINGSSINNNRGSSELGASQFQTNSSNKT-KREQHEAVSQATTTEHLSEASDGEEV 354

Query:   135 XXXXXXXXXXFDEDEPEAKRWKIEGE-SEGISAPGSRTVREPRVVVQTTSDIDILDDGYR 193
                        DE+EP+ KR   E   SE   A   RTV EPR++VQTTS++D+LDDGYR
Sbjct:   355 GNGETDVREK-DENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYR 413

Query:   194 WRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 253
             WRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TTYEGKHNHD+PAA+ S
Sbjct:   414 WRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSS 473

Query:   254 GSRA 257
                A
Sbjct:   474 SHAA 477

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 73/105 (69%), Positives = 87/105 (82%)

Query:   146 DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 205
             +E++PE KR K EGE EG+S   S+ V+EPRVVVQT SDID+L DG+RWRKYGQKVVKGN
Sbjct:   285 EEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGN 344

Query:   206 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 250
              NPRSYYKCT  GC V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct:   345 TNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 130/245 (53%), Positives = 153/245 (62%)

Query:    17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXX 76
             KYGQKQVKGS+ PRSYYKCT P+CP KKKVERSLDGQ+TEI+YKG HNH  P        
Sbjct:   257 KYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELPQKRGNNNG 316

Query:    77 XXXXXXXXXXXTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVXXXXXXXXXXX 136
                         Q SN   ++S     + Q+    T E  S +   ++V           
Sbjct:   317 SCKSSDIANQF-QTSNSSLNKSKRDQETSQV---TTTEQMSEASDSEEVGNAETSVGERH 372

Query:   137 XXXXXXXXFDEDEPEAKRWKIEGE-SEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWR 195
                       EDEP+ KR   E   SE + A   RTV EPR++VQTTS++D+LDDGYRWR
Sbjct:   373 ----------EDEPDPKRRNTEVRVSEPV-ASSHRTVTEPRIIVQTTSEVDLLDDGYRWR 421

Query:   196 KYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 255
             KYGQKVVKGNP PRSYYKCT P C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S  
Sbjct:   422 KYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSH 481

Query:   256 RALPD 260
             +  P+
Sbjct:   482 QLRPN 486

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 76/105 (72%), Positives = 80/105 (76%)

Query:   147 EDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP 206
             EDE EAKRWK E             V+EPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP
Sbjct:   203 EDETEAKRWKRE-----------ENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP 251

Query:   207 NPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 251
             NPRSYYKCT  GC VRKHVERA  D ++VITTYEGKH H +P  R
Sbjct:   252 NPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
 Identities = 76/112 (67%), Positives = 90/112 (80%)

Query:   146 DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 205
             DED+ +    KI    +G+S    RTV EP+++VQT S++D+LDDGYRWRKYGQKVVKGN
Sbjct:   265 DEDDEDLPASKIR-RIDGVSTT-HRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGN 322

Query:   206 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRA 257
             P+PRSYYKCT P C VRKHVERAS D +AVITTYEGKHNHDVPAAR +G+ A
Sbjct:   323 PHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAAR-NGTAA 373

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 123/253 (48%), Positives = 144/253 (56%)

Query:    17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNH--PKPXXXXXX 74
             KYGQK VKGSE PRSYYKCT P+C  KKKVERS +G I EI+Y G H H  P P      
Sbjct:   185 KYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKPPPNRRSGI 244

Query:    75 XXXXXXXXXXXXXTQH-----SNE-IQ-------DQSYATH-GSGQMDSAATPENSSISV 120
                          T++     +NE I+       +  Y +H GS Q+ +         + 
Sbjct:   245 GSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSHSGSMQVQNGTHQFGYGDAA 304

Query:   121 GDDDVXXXXXXXXXXXXXXXXXXXFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQ 180
              D                       + +E E+KR K+E  +   S   +R  REPRVVVQ
Sbjct:   305 ADALYRDENEDDRTSHMSVSLTYDGEVEESESKRRKLEAYATETSG-STRASREPRVVVQ 363

Query:   181 TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYE 240
             TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS D ++V+TTY 
Sbjct:   364 TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYI 423

Query:   241 GKHNHDVPAARGS 253
             GKH H VPAAR S
Sbjct:   424 GKHTHVVPAARNS 436

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 62/106 (58%), Positives = 79/106 (74%)

Query:   146 DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGN 205
             D + P AKR K  G  E   +P  R+  + R+VV T +  DI++DGYRWRKYGQK VKG+
Sbjct:   266 DYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGS 323

Query:   206 PNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 251
             P PRSYY+C+ PGCPV+KHVER+SHD + +ITTYEGKH+HD+P  R
Sbjct:   324 PYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGR 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8P5	WRK33_ARATH	No assigned EC number	0.5567	0.8633	0.6088	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	1e-37
smart00774	59	smart00774, WRKY, DNA binding domain	8e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-28
smart00774	59	smart00774, WRKY, DNA binding domain	9e-24

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  129 bits (326), Expect = 1e-37
 Identities = 42/59 (71%), Positives = 48/59 (81%)

Query: 188 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 246
           LDDGY WRKYGQK VKG+P PRSYY+CT PGCPV+K VER+S D + V  TYEG+HNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  121 bits (307), Expect = 8e-35
 Identities = 37/59 (62%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 188 LDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNH 245
           LDDGY+WRKYGQKV+KG+P PRSYY+CT+  GCP +K V+R+  D   V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  105 bits (263), Expect = 2e-28
 Identities = 37/52 (71%), Positives = 40/52 (76%), Gaps = 1/52 (1%)

Query: 17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPK 67
          KYGQK VKGS  PRSYY+CT P CP KK+VERS  D QI EI Y+G HNHPK
Sbjct: 9  KYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score = 92.5 bits (231), Expect = 9e-24
 Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 2/51 (3%)

Query: 17 KYGQKQVKGSENPRSYYKCTF-PSCPTKKKVERSL-DGQITEIVYKGSHNH 65
          KYGQK +KGS  PRSYY+CT+   CP KK+V+RS  D  + E+ Y+G H H
Sbjct: 9  KYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	88.87
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	86.25

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=2e-31  Score=204.21  Aligned_cols=60  Identities=68%  Similarity=1.347  Sum_probs=52.6

Q ss_pred             CCCCchhhhccccccCCCCCCcccccccCCCCCcccchhhccCCCCeEEEEEecccCCCC
Q 017783          188 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDV  247 (366)
Q Consensus       188 ~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~  247 (366)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999999999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=2.1e-31  Score=204.13  Aligned_cols=59  Identities=54%  Similarity=0.964  Sum_probs=50.7

Q ss_pred             CCCCCCcccccCCCCCCCCCCCCcccCCCCCCCccceeeeec-CCceEEEEecCCCCCCC
Q 017783            9 ARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPK   67 (366)
Q Consensus         9 ~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~   67 (366)
                      +||||+|||||||.|+|+++|||||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            689999999999999999999999999999999999999996 78899999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=3.8e-30  Score=196.90  Aligned_cols=58  Identities=64%  Similarity=1.261  Sum_probs=56.6

Q ss_pred             CCCCchhhhccccccCCCCCCcccccccC-CCCCcccchhhccCCCCeEEEEEecccCC
Q 017783          188 LDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNH  245 (366)
Q Consensus       188 ~dDGy~WRKYGQK~ikgn~~pRsYYrCt~-~gC~akK~Ver~~~D~~~~~~tY~G~HnH  245 (366)
                      ++|||+|||||||.|+|+++||+|||||+ ++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=5.4e-30  Score=196.07  Aligned_cols=57  Identities=49%  Similarity=0.890  Sum_probs=55.0

Q ss_pred             CCCCCCcccccCCCCCCCCCCCCcccCCC-CCCCccceeeeec-CCceEEEEecCCCCC
Q 017783            9 ARCEIGTEKYGQKQVKGSENPRSYYKCTF-PSCPTKKKVERSL-DGQITEIVYKGSHNH   65 (366)
Q Consensus         9 ~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~-~~C~akK~Vers~-Dg~i~~i~Y~G~HnH   65 (366)
                      ++|||+|||||||.|+|+++||+|||||+ ++|+|+|+||++. |+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            58999999999999999999999999999 9999999999996 789999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.87  E-value=0.13  Score=37.51  Aligned_cols=48  Identities=29%  Similarity=0.712  Sum_probs=24.4

Q ss_pred             CCCCchhhhccccccCCCCCCcccccccCC---CCCcccchhhccCCCCeEEEEEecccCC
Q 017783          188 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHP---GCPVRKHVERASHDLRAVITTYEGKHNH  245 (366)
Q Consensus       188 ~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~---gC~akK~Ver~~~D~~~~~~tY~G~HnH  245 (366)
                      +-|||.-.+....      ....|++|+..   +|+|+-.+.  .++  ..++...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~--~~~~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD--GRVVRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T--TEEEE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC--CEEEECCCccCC
Confidence            3488887765544      45689999873   899988776  222  333455599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.25  E-value=0.22  Score=36.23  Aligned_cols=48  Identities=15%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             CCCCCCcccccCCCCCCCCCCCCcccCCCC---CCCccceeeeecCCceEEEEecCCCCC
Q 017783            9 ARCEIGTEKYGQKQVKGSENPRSYYKCTFP---SCPTKKKVERSLDGQITEIVYKGSHNH   65 (366)
Q Consensus         9 ~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~~---~C~akK~Vers~Dg~i~~i~Y~G~HnH   65 (366)
                      .=|||.-++....      ..+.|++|+..   +|+|+=.+.  .++.. .+...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~~-~~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDGR-VVRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TTE-EEE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCCE-EEECCCccCC
Confidence            3456655554443      55789999864   799965554  22222 3444599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	366
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-31
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-27

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)
Query: 179 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITT 238
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 239 YEGKHNHDVPA 249
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 176 RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAV 235
           R+VV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 236 ITTYEGKHNHDVP 248
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	5e-50
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-21
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-47
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	6e-22

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  161 bits (409), Expect = 5e-50
 Identities = 59/77 (76%), Positives = 66/77 (85%)

Query: 173 REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDL 232
                 VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 233 RAVITTYEGKHNHDVPA 249
           +AV+TTYEGKHNHD+PA
Sbjct: 62  KAVVTTYEGKHNHDLPA 78

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKP 68
          KYGQK VKG+  PRSYYKCT P C  +K VER+  D +     Y+G HNH  P
Sbjct: 25 KYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  154 bits (392), Expect = 2e-47
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 176 RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAV 235
           R+VV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 236 ITTYEGKHNHDVPAA 250
           ITTYEGKH+HD+P  
Sbjct: 62  ITTYEGKHDHDMPPG 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 87.5 bits (217), Expect = 6e-22
 Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKP 68
          KYGQK VKGS  PRSYY+C+ P CP KK VERS  D ++    Y+G H+H  P
Sbjct: 22 KYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.97
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.97

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=6.9e-36  Score=237.60  Aligned_cols=75  Identities=68%  Similarity=1.313  Sum_probs=72.9

Q ss_pred             CceeeeeccccccCCCCchhhhccccccCCCCCCcccccccCCCCCcccchhhccCCCCeEEEEEecccCCCCCC
Q 017783          175 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA  249 (366)
Q Consensus       175 ~rvvv~t~s~~~~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~  249 (366)
                      .||+|+|.+++++++|||+|||||||.|||+++||+|||||++||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999986

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=9.2e-36  Score=237.88  Aligned_cols=75  Identities=79%  Similarity=1.322  Sum_probs=69.8

Q ss_pred             CceeeeeccccccCCCCchhhhccccccCCCCCCcccccccCCCCCcccchhhccCCCCeEEEEEecccCCCCCC
Q 017783          175 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA  249 (366)
Q Consensus       175 ~rvvv~t~s~~~~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~  249 (366)
                      .+|+|+|.+++++++|||+|||||||.|||+++||+|||||+++|+|+|+|||+++|+.+++|||+|+|||+.|+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999984

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.97  E-value=7.1e-32  Score=214.53  Aligned_cols=66  Identities=45%  Similarity=0.771  Sum_probs=62.1

Q ss_pred             cCCccCCCCCCcccccCCCCCCCCCCCCcccCCCCCCCccceeeeec-CCceEEEEecCCCCCCCCC
Q 017783            4 SGIHKARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKPQ   69 (366)
Q Consensus         4 ~~~~~~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~P~   69 (366)
                      +.+..++|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+.+++|||+|+|||+.|.
T Consensus         9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            56788999999999999999999999999999999999999999985 6789999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.97  E-value=7.2e-32  Score=215.41  Aligned_cols=67  Identities=45%  Similarity=0.716  Sum_probs=62.4

Q ss_pred             ccCCccCCCCCCcccccCCCCCCCCCCCCcccCCCCCCCccceeeeec-CCceEEEEecCCCCCCCCC
Q 017783            3 LSGIHKARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKPQ   69 (366)
Q Consensus         3 ~~~~~~~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~P~   69 (366)
                      ++.+..++|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+.+++|||+|+|||+.|.
T Consensus        11 ~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           11 TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            456788999999999999999999999999999999999999999984 7789999999999999883

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	4e-38
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	3e-20

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  129 bits (325), Expect = 4e-38
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 179 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITT 238
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TT
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 239 YEGKHNHDVPA 249
           YEGKHNHD+PA
Sbjct: 61  YEGKHNHDLPA 71

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 81.8 bits (202), Expect = 3e-20
 Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKP 68
          KYGQK VKG+  PRSYYKCT P C  +K VER+  D +     Y+G HNH  P
Sbjct: 18 KYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.2e-35  Score=229.94  Aligned_cols=71  Identities=83%  Similarity=1.424  Sum_probs=68.4

Q ss_pred             eeeccccccCCCCchhhhccccccCCCCCCcccccccCCCCCcccchhhccCCCCeEEEEEecccCCCCCC
Q 017783          179 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA  249 (366)
Q Consensus       179 v~t~s~~~~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~  249 (366)
                      |+|.+++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            56788999999999999999999999999999999999999999999999999999999999999999985

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.9e-32  Score=213.28  Aligned_cols=66  Identities=45%  Similarity=0.733  Sum_probs=62.0

Q ss_pred             cCCccCCCCCCcccccCCCCCCCCCCCCcccCCCCCCCccceeeeec-CCceEEEEecCCCCCCCCC
Q 017783            4 SGIHKARCEIGTEKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKPQ   69 (366)
Q Consensus         4 ~~~~~~~Dgy~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~P~   69 (366)
                      +.+..+||||.|||||||.|||+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|+
T Consensus         5 ~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           5 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            45778999999999999999999999999999999999999999986 6889999999999999884