Citrus Sinensis ID: 017787

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQIIWDVKPTHRVVNNTSFTPNYYYEKNWDWLKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEKRLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIMLNALLIESHQRL
ccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccccccccccccEEEEEEEEccccEEEEEEEccccccHHHHHHHHHHccccccEEEEEccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccccccccHHHHHHcccHHHHHHHHHHHHHcHHHHHcccccEEccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccc
cccHHHHHHHHHHHEHHHHHHHHcHHHcHcHEEHHHHHHHHHHHHHHcccccccccccHccccccEEEEccccHHHHHHcccEEEcccccHccccccccccccccccccccccccccHcccccccHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHccHHHHHHHHcHHHcccccccEEcccccEEEEEEEcccHHHHHHHHHHHHHccccccEEEEcHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccEEEEEccccccccccccHHHHHHccHHHHHHHHHHHHHccccccccccEEEEEccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccc
MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVhltpyfpsvsdfatsfssfvvFDHRDSCINLVNQIiwdvkpthrvvnntsftpnyyyekNWDWlksrkldacefqkldksdasdllngSWVVVAGDSQARLLVVSLLSLVLDQervdsirgdlfkrhsdydiVIDEIGMKLDfiwapfetnLTDLVIKFkekrkypdvlVMGTGLWHMLHVGNASDYGVSLRSLKSSVVsllpfspelgtdgpvtgsvsirsphlfwlGMPMLINGMLNTEEKRLKMNDLMWHAYDRalgdskllrqtggplvllDIQSltwncgprctldgmhydAAVYDAAVHIMLNALLIESHQRL
MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQiiwdvkpthrvvnntsftpnyYYEKNWDWLKSRKLDACEFQKLDksdasdllNGSWVVVAGDSQARLLVVSLLSlvldqervdsirgdlfkrhsdYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEKRLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIMLNALLIESHQRL
MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQIIWDVKPTHRVVNNTSFTPNYYYEKNWDWLKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARllvvsllslvlDQERVDSIRGDLFKRHSDYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGvslrslkssvvsllPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEKRLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIMLNALLIESHQRL
***GVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQIIWDVKPTHRVVNNTSFTPNYYYEKNWDWLKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEKRLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIMLNALLI******
***GVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFATS********HRDSCINLVNQIIWDVKPTHRVVNNTSFTPNYYYEKNWDWLKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARLLVVSLLSLVLD************KRHSDYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLING***T*****KMNDLMWHAYDRALGDS******GGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIMLNALLIESHQ**
MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQIIWDVKPTHRVVNNTSFTPNYYYEKNWDWLKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEKRLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIMLNALLIESHQRL
MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQIIWDVKPTHRVVN****TPN**YEKNWDWLKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTD*****SVSIRSPHLFWLGMPMLINGMLNTEEKRLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIMLNALLIESHQRL
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFATSFSSFVVFDHRDSCINLVNQIIWDVKPTHRVVNNTSFTPNYYYEKNWDWLKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEKRLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIMLNALLIESHQRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
255571275377 conserved hypothetical protein [Ricinus 0.994 0.965 0.752 1e-164
224079666371 predicted protein [Populus trichocarpa] 0.994 0.981 0.727 1e-152
224134641370 predicted protein [Populus trichocarpa] 0.991 0.981 0.727 1e-149
15228492368 uncharacterized protein [Arabidopsis tha 0.991 0.986 0.698 1e-145
297828796368 hypothetical protein ARALYDRAFT_477567 [ 0.991 0.986 0.698 1e-145
22136050368 unknown protein [Arabidopsis thaliana] 0.991 0.986 0.695 1e-144
449456210364 PREDICTED: uncharacterized protein LOC10 0.983 0.989 0.681 1e-140
358248026370 uncharacterized protein LOC100789581 [Gl 0.991 0.981 0.646 1e-128
357491771370 hypothetical protein MTR_5g076930 [Medic 0.997 0.986 0.622 1e-124
225466247353 PREDICTED: uncharacterized protein LOC10 0.959 0.994 0.644 1e-121
>gi|255571275|ref|XP_002526587.1| conserved hypothetical protein [Ricinus communis] gi|223534081|gb|EEF35799.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/376 (75%), Positives = 327/376 (86%), Gaps = 12/376 (3%)

Query: 1   MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFA 60
           M GGVQ+G LAACVVLFVPM MAGWHLSRNKMLFF  +LFITLAV VHLTPYFPSVSDF 
Sbjct: 1   MFGGVQLGVLAACVVLFVPMGMAGWHLSRNKMLFFSGALFITLAVGVHLTPYFPSVSDFV 60

Query: 61  TSFSSFVVFDHR-DSCINLVNQIIWDVKPTHRVVNNTSF---------TPNYYYEKNWDW 110
           TS  S VVFD+R DSCINLVN+++WDVKP  RV+N++S            +  Y+K WDW
Sbjct: 61  TSVQSVVVFDNREDSCINLVNEVVWDVKP--RVINDSSSGSSDSGGIKNGSLSYDKIWDW 118

Query: 111 LKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDL 170
            K+ K+ ACEFQ+LD+ DASDLLNGSWVVVAGDSQARL+V SLL L+LD +R++SI+GDL
Sbjct: 119 AKTGKVKACEFQRLDRFDASDLLNGSWVVVAGDSQARLIVQSLLKLILDSKRMESIKGDL 178

Query: 171 FKRHSDYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGN 230
           FKRHSDY IVI+EIG+KLDFIWAP+  NLTDL+I FK+ R YPDVLVMG+GLWHMLH+ N
Sbjct: 179 FKRHSDYQIVIEEIGLKLDFIWAPYVVNLTDLMIGFKQNRSYPDVLVMGSGLWHMLHMNN 238

Query: 231 ASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEK 290
           ASDYG +L+SL+SSVVSLLPFSP+LG DGPVTGSVS+RSPHLFWLGMPMLINGMLNTEEK
Sbjct: 239 ASDYGFALQSLRSSVVSLLPFSPQLGADGPVTGSVSVRSPHLFWLGMPMLINGMLNTEEK 298

Query: 291 RLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAA 350
           R KM+D MWHAYDRAL +S+LLR+ GGPL+LLDIQS++WNCGPRCT+DGMHYD AVY+AA
Sbjct: 299 REKMSDEMWHAYDRALRNSRLLRRYGGPLLLLDIQSMSWNCGPRCTVDGMHYDGAVYEAA 358

Query: 351 VHIMLNALLIESHQRL 366
           VHI+LNALLIESHQ+L
Sbjct: 359 VHILLNALLIESHQKL 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224079666|ref|XP_002305906.1| predicted protein [Populus trichocarpa] gi|222848870|gb|EEE86417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224134641|ref|XP_002327454.1| predicted protein [Populus trichocarpa] gi|222836008|gb|EEE74429.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15228492|ref|NP_186971.1| uncharacterized protein [Arabidopsis thaliana] gi|6714417|gb|AAF26105.1|AC012328_8 unknown protein [Arabidopsis thaliana] gi|56744240|gb|AAW28560.1| At3g03210 [Arabidopsis thaliana] gi|332640392|gb|AEE73913.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828796|ref|XP_002882280.1| hypothetical protein ARALYDRAFT_477567 [Arabidopsis lyrata subsp. lyrata] gi|297328120|gb|EFH58539.1| hypothetical protein ARALYDRAFT_477567 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22136050|gb|AAM91607.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449456210|ref|XP_004145843.1| PREDICTED: uncharacterized protein LOC101220526 [Cucumis sativus] gi|449521649|ref|XP_004167842.1| PREDICTED: uncharacterized LOC101220526 [Cucumis sativus] Back     alignment and taxonomy information
>gi|358248026|ref|NP_001240050.1| uncharacterized protein LOC100789581 [Glycine max] gi|255636963|gb|ACU18814.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357491771|ref|XP_003616173.1| hypothetical protein MTR_5g076930 [Medicago truncatula] gi|355517508|gb|AES99131.1| hypothetical protein MTR_5g076930 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225466247|ref|XP_002270106.1| PREDICTED: uncharacterized protein LOC100244457 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
TAIR|locus:2097710368 AT3G03210 "AT3G03210" [Arabido 0.991 0.986 0.663 1.2e-134
TAIR|locus:2097710 AT3G03210 "AT3G03210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 246/371 (66%), Positives = 287/371 (77%)

Query:     1 MVGGVQIGALAACVVLFVPMVMAGWHLSRNKMLFFGCSLFITLAVCVHLTPYFPSVSDFA 60
             M+G + +G LAAC VLFVPM MAGWHLSRNKMLFF  +LFI+LAVCVHLTPYFPSVSD  
Sbjct:     1 MLGAIHLGVLAACFVLFVPMAMAGWHLSRNKMLFFSGALFISLAVCVHLTPYFPSVSDIV 60

Query:    61 TSFSSFVVFDHRDSCINLVNQIIWDVKPT---HRVVNNTSFTPNYYYEKNWDWLKSRKLD 117
              S SS VV+DHR SCIN VNQI+WDVKP      V  N   T   Y+ KNWDW+KSRK+ 
Sbjct:    61 ASVSSVVVYDHRISCINEVNQIVWDVKPVPNPESVRRNNGSTKLDYFVKNWDWMKSRKVL 120

Query:   118 ACEFQKLDKSDASDLLNGSWVVVAGDSQARXXXXXXXXXX--XDQERVDSIRGDLFKRHS 175
             +CEFQKLDK D SDLLNGSWVVVAGDSQAR             D + +DS+RGDLF+RHS
Sbjct:   121 SCEFQKLDKFDVSDLLNGSWVVVAGDSQARFVALSLLNLVLGSDSKAMDSVRGDLFRRHS 180

Query:   176 DYDIVIDEIGMKLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGLWHMLHVGNASDYG 235
             DY IV+ EIGMKLDF+WAP+E +L DLV+ +K+ +KYPDV++MGTGLWHMLHV NASD+G
Sbjct:   181 DYSIVVKEIGMKLDFVWAPYEKDLDDLVVSYKKMKKYPDVVIMGTGLWHMLHVNNASDFG 240

Query:   236 XXXXXXXXXXXXXXPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEKRLKMN 295
                           P +P+    G   GSVS RS HLFW+GMP+LINGMLNT+EK+ KM+
Sbjct:   241 FRLRQLSSHVESLVPLTPKEQEGG---GSVSGRSVHLFWIGMPVLINGMLNTDEKKEKMS 297

Query:   296 DLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPRCTLDGMHYDAAVYDAAVHIML 355
             D +WH YDR+LG+SK+LRQ GGPL+LLDIQS TWNCGP+CTLDGMHYD+AVYDAAVH+ML
Sbjct:   298 DTVWHEYDRSLGESKILRQMGGPLILLDIQSFTWNCGPQCTLDGMHYDSAVYDAAVHVML 357

Query:   356 NALLIESHQRL 366
             NALLIESHQ L
Sbjct:   358 NALLIESHQSL 368


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      366       341   0.00095  116 3  11 22  0.48    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  266 KB (2139 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.74u 0.10s 25.84t   Elapsed:  00:00:02
  Total cpu time:  25.74u 0.10s 25.84t   Elapsed:  00:00:02
  Start:  Tue May 21 02:30:07 2013   End:  Tue May 21 02:30:09 2013
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 2e-07
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information 
 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 33/158 (20%)

Query: 124 LDKSDASDLLN---GSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIV 180
           L + DA   L    G  VV  GDS +R    SL+ L+   +        L +    +   
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLL--SQVEPPKGKTLERDGRLFRFR 58

Query: 181 IDEIGMKLDFIWAPF-------ETNLTDL---VIKFKEKRKY--PDVLVMGTGLW----- 223
             +  + ++F W+PF       E     L    I  K  + +   DVLV  +G W     
Sbjct: 59  FKDYNVTIEFYWSPFLVESDNAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWWLHRK 118

Query: 224 -----------HMLHVGNASDYGVSLRSLKSSVVSLLP 250
                      +   +G    Y  +L +    V   LP
Sbjct: 119 VYIGWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLP 156

The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 366
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 99.97
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 99.33
PF1441655 PMR5N: PMR5 N terminal Domain 98.76
cd01829200 SGNH_hydrolase_peri2 SGNH_peri2; putative periplas 98.26
cd01841174 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfa 98.13
cd01836191 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, Fee 98.05
cd04502171 SGNH_hydrolase_like_7 Members of the SGNH-hydrolas 97.82
cd04501183 SGNH_hydrolase_like_4 Members of the SGNH-hydrolas 97.73
cd01838199 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hyd 97.72
cd01834191 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SG 97.7
cd01839208 SGNH_arylesterase_like SGNH_hydrolase subfamily, s 97.61
COG2845354 Uncharacterized protein conserved in bacteria [Fun 97.39
cd01825189 SGNH_hydrolase_peri1 SGNH_peri1; putative periplas 97.37
cd01835193 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SG 97.3
cd01840150 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SG 97.19
cd01827188 sialate_O-acetylesterase_like1 sialate O-acetylest 97.18
cd04506204 SGNH_hydrolase_YpmR_like Members of the SGNH-hydro 97.07
cd01830204 XynE_like SGNH_hydrolase subfamily, similar to the 96.73
cd01828169 sialate_O-acetylesterase_like2 sialate_O-acetylest 96.71
cd01833157 XynB_like SGNH_hydrolase subfamily, similar to Rum 96.7
PRK10528191 multifunctional acyl-CoA thioesterase I and protea 96.55
cd01832185 SGNH_hydrolase_like_1 Members of the SGNH-hydrolas 96.39
cd01844177 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SG 96.08
cd01831169 Endoglucanase_E_like Endoglucanase E-like members 95.93
cd01820214 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-A 95.76
cd00229187 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, 94.85
cd01821198 Rhamnogalacturan_acetylesterase_like Rhamnogalactu 94.47
cd01822177 Lysophospholipase_L1_like Lysophospholipase L1-lik 94.28
PF13472179 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase fami 88.32
cd01823259 SEST_like SEST_like. A family of secreted SGNH-hyd 85.04
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information 
Probab=100.00  E-value=5e-51  Score=399.43  Aligned_cols=257  Identities=18%  Similarity=0.219  Sum_probs=192.6

Q ss_pred             EecchhhHhhhhhhhccCCC------------------ccccccCcccCCccccccchhhhhcCCcccccccccCccccc
Q 017787           69 FDHRDSCINLVNQIIWDVKP------------------THRVVNNTSFTPNYYYEKNWDWLKSRKLDACEFQKLDKSDAS  130 (366)
Q Consensus        69 ~~~~~~C~~ll~~G~W~~~~------------------~c~~~~~~~~~~~~~~~~~w~Wq~~~~P~~C~l~~f~~~d~~  130 (366)
                      .+++..|+  +++|+||.|+                  +|++|||+|.+|     ++||||    |++|+||||++.+|+
T Consensus        47 ~~~~~~CD--~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Y-----l~WRWq----P~gC~LPRFda~~fL  115 (387)
T PLN02629         47 QANQSTCA--LFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDY-----LKYRWQ----PLNCELPRFNGLEFL  115 (387)
T ss_pred             CCCccccC--CCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcch-----hhcccc----CCCCCCCCcCHHHHH
Confidence            34566899  9999999775                  788899999988     999999    999999999999999


Q ss_pred             cccCCcEEEEecCcchHHHHHHHHHhhcchhhhhhhhccccccc-CCceeeeecccceeeeeecccccchh---------
Q 017787          131 DLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRH-SDYDIVIDEIGMKLDFIWAPFETNLT---------  200 (366)
Q Consensus       131 ~cLrgK~ivFvGDS~~Rq~~~sLv~lL~~~~~~~~~~~~~~~kh-~~~~~~f~~~n~~i~f~W~Pfl~~~~---------  200 (366)
                      +.||||+|+|||||++|||||||+|||+. ......  ....++ ....++|++||+||+|||+|||+...         
T Consensus       116 e~~RgKrl~FVGDSL~RNQ~eSLvClL~~-~~p~~~--~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~~~~~l~  192 (387)
T PLN02629        116 LKMKGKTVMFVGDSLGRNQWESLICLISS-SVPSTR--TQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQGKRVLK  192 (387)
T ss_pred             HHhcCCeEEEeccccchhHHHHHHHHhhc-cCCCCc--eeeecCCceEEEEeccCCEEEEEEecceEEeeecCCCceeEE
Confidence            99999999999999999999999999952 211111  111222 23356899999999999999998532         


Q ss_pred             -HHHHhhhccccCCceEEeccchheehhcc----------C--------CCccccchhcccccc----------eeceec
Q 017787          201 -DLVIKFKEKRKYPDVLVMGTGLWHMLHVG----------N--------ASDYGVSLRSLKSSV----------VSLLPF  251 (366)
Q Consensus       201 -~~~~~~~~~~~~pdvlVi~sGlW~~~~~~----------~--------~~~y~~~L~~i~~~v----------~~l~~~  251 (366)
                       |.+.+.+..+.+.||||||+||||.+...          .        ..+|+++|++|.+||          ++||++
T Consensus       193 LD~id~~a~~w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~  272 (387)
T PLN02629        193 LEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSI  272 (387)
T ss_pred             ecCcchhhhhhccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEec
Confidence             22223456788999999999999965321          0        126999999999986          589999


Q ss_pred             CCCCCCCCC-CCCC------cccCCceeeeechhHHHhhccCcHHHHhhhhhhhHHHHHHhhcccchhhhcCCceEEEec
Q 017787          252 SPELGTDGP-VTGS------VSIRSPHLFWLGMPMLINGMLNTEEKRLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDI  324 (366)
Q Consensus       252 sP~h~~~~~-~~gg------c~~~t~~V~w~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~llDi  324 (366)
                      ||.||+||+ ++||      |.++|       .|..     +++ .... .+.+....+++      .+..+.++.+|||
T Consensus       273 SP~Hfe~g~Wn~gg~~~~~~C~~et-------~P~~-----~~~-~~~~-~~~~~~~ve~v------~~~~~~~v~lLDI  332 (387)
T PLN02629        273 SPTHYNPSEWSAGASTTTKNCYGET-------TPMS-----GMT-YPGA-YPDQMRVVDEV------IRGMHNPAYLLDI  332 (387)
T ss_pred             CcccccCCCcCCCCCCCCCCCccCC-------ccCc-----Ccc-ccCc-chHHHHHHHHH------HHhcCCceEEEec
Confidence            999999887 6543      76666       4521     111 0011 11112221222      2334678999999


Q ss_pred             cccccccCCe----e--------------ccCCccc-chhhHHHHHHHHHHHHH
Q 017787          325 QSLTWNCGPR----C--------------TLDGMHY-DAAVYDAAVHIMLNALL  359 (366)
Q Consensus       325 ~~ls~~~~~~----~--------------~~DG~H~-~~~v~~~~~qILLN~l~  359 (366)
                      |.||++|++.    +              ..||+|| .|+++|++++||+.+|+
T Consensus       333 T~ls~lR~DgHPs~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~  386 (387)
T PLN02629        333 TLLSELRKDGHPSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF  386 (387)
T ss_pred             hhhhhcCCCCCcccccCCCchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence            9999999633    2              2499999 99999999999999886

>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases Back     alignment and domain information
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins Back     alignment and domain information
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A Back     alignment and domain information
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE Back     alignment and domain information
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB Back     alignment and domain information
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional Back     alignment and domain information
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans Back     alignment and domain information
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases Back     alignment and domain information
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases Back     alignment and domain information
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases Back     alignment and domain information
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases Back     alignment and domain information
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A Back     alignment and domain information
>cd01823 SEST_like SEST_like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 55/322 (17%), Positives = 94/322 (29%), Gaps = 88/322 (27%)

Query: 56  VSDFATSFSSFVVFDH---RDSCINLVNQIIWDV--KPTHRVVN--NTSFTPNYYYEKNW 108
           V D   S  S    DH       ++   ++ W +  K    V          NY      
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY------ 91

Query: 109 DWLKSRKLDACEFQKLDKSDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRG 168
            +L S          +      +  +  +     D+Q    V +  + V   +    +R 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQ----VFAKYN-VSRLQPYLKLRQ 142

Query: 169 DLFK-RHSDYDIVIDEIGM----KLDFIWAPFETNLTDLVIKFKEKRKYPDVLVMGTGL- 222
            L + R +   ++ID  G+    K         T +   V        Y     M   + 
Sbjct: 143 ALLELRPAKN-VLID--GVLGSGK---------TWVALDVC-----LSYKVQCKMDFKIF 185

Query: 223 WHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLIN 282
           W  L++ N +     L  L+  +  + P             + + RS H          N
Sbjct: 186 W--LNLKNCNSPETVLEMLQKLLYQIDP-------------NWTSRSDHSS--------N 222

Query: 283 GMLNTEEKRLKMNDLM-WHAYDRALGDSKLLRQTGGPLVLLDIQSL-TWNC-GPRC---- 335
             L     + ++  L+    Y+  L            LVLL++Q+   WN     C    
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL------------LVLLNVQNAKAWNAFNLSCKILL 270

Query: 336 -TLDGMHYDAAVYDAAVHIMLN 356
            T      D        HI L+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD 292

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 98.47
4hf7_A209 Putative acylhydrolase; PF13472 family, structural 98.08
3hp4_A185 GDSL-esterase; psychrotrophic, monoethylphosphonat 98.0
3mil_A240 Isoamyl acetate-hydrolyzing esterase; SGNH-hydrola 97.87
3dc7_A232 Putative uncharacterized protein LP_3323; NESG LPR 97.83
2hsj_A214 Putative platelet activating factor; structr genom 97.82
3rjt_A216 Lipolytic protein G-D-S-L family; PSI-biology, mid 97.78
2q0q_A216 ARYL esterase; SGNH hydrolase, oligomeric enzyme, 97.73
3p94_A204 GDSL-like lipase; serine hydrolase, catalytic tria 97.73
1fxw_F229 Alpha2, platelet-activating factor acetylhydrolase 97.71
3dci_A232 Arylesterase; SGNH_hydrolase SUBF structural genom 97.67
2vpt_A215 Lipolytic enzyme; esterase, hydrolase; 1.40A {Clos 97.66
1es9_A232 PAF-AH, platelet-activating factor acetylhydrolase 97.55
1ivn_A190 Thioesterase I; hydrolase, protease; 1.90A {Escher 97.52
1yzf_A195 Lipase/acylhydrolase; structural GENO PSI, protein 97.51
1vjg_A218 Putative lipase from the G-D-S-L family; structura 97.13
3bzw_A274 Putative lipase; protein structure initiative II, 96.43
2o14_A375 Hypothetical protein YXIM; NESG, X-RAY, SR595, str 95.65
3skv_A385 SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydr 93.85
2wao_A341 Endoglucanase E; plant cell WALL degradation, carb 93.18
2waa_A347 Acetyl esterase, xylan esterase, putative, AXE2C; 89.12
1k7c_A233 Rhamnogalacturonan acetylesterase; N-linked glycos 81.75
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=98.47  E-value=2.4e-07  Score=81.56  Aligned_cols=122  Identities=15%  Similarity=0.174  Sum_probs=74.1

Q ss_pred             cCCceEEeccchheehhccCCCccccchhcccccceeceecCCCCCCCCCCCCCcccCCceeeeechhHHHhhccCcHHH
Q 017787          211 KYPDVLVMGTGLWHMLHVGNASDYGVSLRSLKSSVVSLLPFSPELGTDGPVTGSVSIRSPHLFWLGMPMLINGMLNTEEK  290 (366)
Q Consensus       211 ~~pdvlVi~sGlW~~~~~~~~~~y~~~L~~i~~~v~~l~~~sP~h~~~~~~~ggc~~~t~~V~w~~~P~~~~~~l~~~~~  290 (366)
                      ..||+||++.|.....  .+.+.|++.++++.+   .++...|.               .+|+|...||+.......   
T Consensus        73 ~~pd~Vvi~~G~ND~~--~~~~~~~~~l~~ii~---~l~~~~p~---------------~~ii~~~~~P~~~~~~~~---  129 (200)
T 4h08_A           73 TKFDVIHFNNGLHGFD--YTEEEYDKSFPKLIK---IIRKYAPK---------------AKLIWANTTPVRTGEGMK---  129 (200)
T ss_dssp             SCCSEEEECCCSSCTT--SCHHHHHHHHHHHHH---HHHHHCTT---------------CEEEEECCCCCEESGGGC---
T ss_pred             CCCCeEEEEeeeCCCC--CCHHHHHHHHHHHHH---HHhhhCCC---------------ccEEEeccCCCccccccc---
Confidence            5689999999988843  344567777776644   44444443               467776544322110000   


Q ss_pred             HhhhhhhhHHHHHHhhcccchhhhcCCceEEEeccccccccCCe-eccCCcccchhhHHHHHHHHHHHHH
Q 017787          291 RLKMNDLMWHAYDRALGDSKLLRQTGGPLVLLDIQSLTWNCGPR-CTLDGMHYDAAVYDAAVHIMLNALL  359 (366)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~llDi~~ls~~~~~~-~~~DG~H~~~~v~~~~~qILLN~l~  359 (366)
                      ...-.++.+..||+.+.+  +.++  ..+.++|.+..+...... .+.||+||.+.-++..++.+...+-
T Consensus       130 ~~~~~~~~~~~~n~~~~~--~a~~--~~v~~iD~~~~~~~~~~~~~~~Dg~Hpn~~Gy~~~A~~i~~~i~  195 (200)
T 4h08_A          130 EFAPITERLNVRNQIALK--HINR--ASIEVNDLWKVVIDHPEYYAGGDGTHPIDAGYSALANQVIKVIK  195 (200)
T ss_dssp             EECTHHHHHHHHHHHHHH--HHHH--TTCEEECHHHHHTTCGGGTTTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHH--Hhhh--cceEEEecHHhHhcCHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            011123445666665543  2232  247788987766543222 3579999999999999999988774
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0 Back     alignment and structure
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9 Back     alignment and structure
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3 Back     alignment and structure
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A* Back     alignment and structure
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis} Back     alignment and structure
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A Back     alignment and structure
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str} Back     alignment and structure
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum} Back     alignment and structure
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A* Back     alignment and structure
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A* Back     alignment and structure
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5 Back     alignment and structure
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A Back     alignment and structure
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9 Back     alignment and structure
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8 Back     alignment and structure
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP} Back     alignment and structure
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A* Back     alignment and structure
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus} Back     alignment and structure
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 98.05
d1yzfa1195 Lipase/acylhydrolase {Enterococcus faecalis [TaxId 97.77
d2o14a2208 Hypothetical protein YxiM {Bacillus subtilis [TaxI 97.72
d2hsja1211 Uncharacterized protein SP1450 {Streptococcus pneu 97.38
d1es9a_212 Platelet-activating factor acetylhydrolase {Cow (B 97.29
d1vjga_201 Hypothetical protein alr1529 {Nostoc sp. pcc 7120 96.83
d1fxwf_212 Platelet-activating factor acetylhydrolase {Cow (B 94.66
d1jrla_179 Thioesterase I, TAP {Escherichia coli [TaxId: 562] 90.1
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 83.57
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]

Probab=98.05  E-value=1.7e-06  Score=73.46  Aligned_cols=43  Identities=12%  Similarity=-0.067  Sum_probs=31.3

Q ss_pred             ceEEEeccccccccCC------eeccCCcccchhhHHHHHHHHHHHHHh
Q 017787          318 PLVLLDIQSLTWNCGP------RCTLDGMHYDAAVYDAAVHIMLNALLI  360 (366)
Q Consensus       318 ~v~llDi~~ls~~~~~------~~~~DG~H~~~~v~~~~~qILLN~l~~  360 (366)
                      .+.++|+...+.....      .+..||+||.+.-++..++.|.+.+-.
T Consensus       157 ~~~~id~~~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~ia~~i~~~I~~  205 (207)
T d3dc7a1         157 GVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDS  205 (207)
T ss_dssp             TCCEEEHHHHSSCCTTSHHHHHHHBSSSSSBCHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeehhhhhhcccccccchhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            3567787655433211      135799999999999999999998864
>d1yzfa1 c.23.10.5 (A:1-195) Lipase/acylhydrolase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha1 [TaxId: 9913]} Back     information, alignment and structure
>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc 7120 [TaxId: 103690]} Back     information, alignment and structure
>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha2 [TaxId: 9913]} Back     information, alignment and structure
>d1jrla_ c.23.10.5 (A:) Thioesterase I, TAP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure