Citrus Sinensis ID: 017788

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRSQQNFYSNEEEEPHPLKHVGFVY
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEccccccccccccccccccccEEEcccccccEEccccccccccccEEccccccccccccccccccccccEEEEccccccccccccccccccccEEccccccccEEcccccccccEEcccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHcccHHHHccccccccccccccEEEEccccccccccccccccEEEEEccccccccccccEEEEEEEEEEEEEEEccccEEEcccccccccEEEEEEEEcccccccccccccEEEEEEEEEcccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccccHcccEEEccccccHcccccccccccHHEEEcccccccccccccHHHHHHccEEcccccccHcHccccHHHHHHHHEEEccccHHHHcccHHHHcHHHccEEEccccccccccccccccccEEEccccccccEcccccccccHcccccccEEEccccHHHHccccHHHHHHHHHHHHHHHHccccccccccHcccccccEEEEcccccccHHEcccccccEEEEEcccccccccccEEEEEEEEEEcccccccccccEEEEcccccccEEEEEEcccccccccccccccEEEEEEEEEcccccccccEEEEEcEEEEEEEccccccccccccccccccccccccccccccEEc
Coil and Loop (DISEMBL)
MERTNLRFLILKNLVNLKEIDLSYSrqlkklpdlsqaRNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNcskllslpelpcnlfsvgvrrctsLEALSSFSFLFsamsphndqyfnlsdclklDQNELKGIAEDALQKIQQKATSWWMKLkeetdykykpscggiyfpgseipkwfrfssmgssiefkpqsdwinneyLGIAFCAVLRCrirfkipshdwyvrTIDYvesdhlfmgyyffhgdkgdsrQDFEKALFKIYFYnhtgramrccgvkkcgirlltagddflgINLRsqqnfysneeeephplkhvgfvy
Flexible Loop (DISEMBL)
MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFkipshdwyvRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRSQQNFysneeeephplkhvgfvy
Low Complexity Region (SEG)
MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTslealssfsflfsamsPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRSQQNFYSNEEEEPHPLKHVGFVY
Disordered region (IsUnstruct)
*****LRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRS**********************
Disordered Region (DISOPRED)
*ERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQ*****IAEDALQKIQQKATSWWMKLKE**DYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLT***************************KHVGFVY
Disordered Region (DISEMBL)
MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRSQQNFYSNEEEEPHPLKHVGFVY
Disordered Region (DISPRO)
***TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGD*********************HPLKHVGFVY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESDHLFMGYYFFHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDFLGINLRSQQNFYSNEEEEPHPLKHVGFVY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.396	0.111	0.359	1e-14
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.311	0.060	0.422	3e-11
Q40392	1144	TMV resistance protein N	N/A	no	0.357	0.114	0.337	2e-10
O82500	1095	Putative disease resistan	no	no	0.792	0.264	0.236	4e-10
Q9FKZ0	815	Probable disease resistan	no	no	0.300	0.134	0.369	2e-09
Q9LVT1	623	Putative disease resistan	no	no	0.368	0.216	0.335	4e-09
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.901	0.204	0.222	3e-08
Q9FKZ1	809	Probable disease resistan	no	no	0.379	0.171	0.355	3e-08
P0CB16	1201	Putative disease resistan	no	no	0.366	0.111	0.361	3e-08
Q9LZ25	811	Probable disease resistan	no	no	0.368	0.166	0.348	4e-08

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 22/167 (13%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           +++L +L+ +DLS S  L ++PDLS+A  LE+L+L  C SLV   S+I  L +LV L+M+
Sbjct: 769 IQSLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMK 828

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLR--------------------RIPESIINLS 110
            C  L  LP+ +  L SL+ L LSGCS+LR                     IP +I NL 
Sbjct: 829 ECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGNLH 887

Query: 111 KLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM 157
           +L  L +K C+ L  LP    NL S+     +   +L SF  +  ++
Sbjct: 888 RLVRLEMKKCTGLEVLPT-DVNLSSLETLDLSGCSSLRSFPLISESI 933

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 21/135 (15%)

Query: 13   NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 72
            +L  LK++ LSYS QL K+P LS A NLE++ L+ C+SL+    SI YL KLV L+++ C
Sbjct: 1256 SLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGC 1315

Query: 73   KNLNRLPSSLCELISLQRLYLSGCSNL--------------------RRIPESIINLSKL 112
              L  +P S+ +L SL+ L LSGCS L                    + IP SI NL  L
Sbjct: 1316 SKLENIP-SMVDLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLL 1374

Query: 113  ELLHLKNCSKLLSLP 127
            E L L+N   L +LP
Sbjct: 1375 EKLDLENSRHLKNLP 1389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 35/166 (21%)

Query: 12  KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71
           K+L +L+ IDLS+S++L + PD +   NLE + L  CS+L E H S+   SK++ L +  
Sbjct: 616 KHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLND 675

Query: 72  CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPE-----------------------SI-- 106
           CK+L R P    E  SL+ L L  C +L ++PE                       SI  
Sbjct: 676 CKSLKRFPCVNVE--SLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQ 733

Query: 107 --INLSKLELLHLKNCSKLLSLPELPC---NLFSVGVRRCTSLEAL 147
              +++KL L ++KN   L++LP   C   +L S+ V  C+ LE+L
Sbjct: 734 YKTHVTKLLLWNMKN---LVALPSSICRLKSLVSLSVSGCSKLESL 776

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 153/401 (38%), Gaps = 111/401 (27%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM- 69
           ++ L NL+ ++L+ SR L+ LP+L +A  L  L L  C SLVE  SSI+ L  L+ L+M 
Sbjct: 627 VQPLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLEMS 686

Query: 70  ----------------------RLCKNLNRLPS-----SLCELIS--------------- 87
                                 R C  L   P       L  LI                
Sbjct: 687 CCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEISTNIRLLNLIGTAITEVPPSVKYWSK 746

Query: 88  --------------------LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 127
                               L++L L     L  IP  +  L +L+++ +  C  ++SLP
Sbjct: 747 IDEICMERAKVKRLVHVPYVLEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLP 806

Query: 128 ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQ 187
           +LP ++ ++    C SL+ L      F   S H     N  +CLKL Q         A +
Sbjct: 807 KLPGSVSALTAVNCESLQILHGH---FRNKSIH----LNFINCLKLGQR--------AQE 851

Query: 188 KIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWIN-N 246
           KI +              Y ++ S      PG  +P +F + S GSSI     S+ ++ +
Sbjct: 852 KIHRSV------------YIHQSSYIADVLPGEHVPAYFSYRSTGSSIMI--HSNKVDLS 897

Query: 247 EYLGIAFCAVLRCRIRFK------------IPSHDWYVRTID--YVESDHLFMGYYFFHG 292
           ++     C VL    RF+             P   +  + +D   ++SDHL M  +    
Sbjct: 898 KFNRFKVCLVLGAGKRFEGCDIKFYKQFFCKPREYYVPKHLDSPLLKSDHLCMCEFELMP 957

Query: 293 DKGDSRQDF--EKALFKIYFYNHTGRAMRCCGVKKCGIRLL 331
               +  +        ++ F +  G  +  C VK+CG++ L
Sbjct: 958 PHPPTEWELLHPNEFLEVSFESRGG--LYKCEVKECGLQFL 996

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 12  KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           K L NL+EID+ Y   L +LP  + +  +L+ L +  C+ L +   +I  LS+L  L M 
Sbjct: 652 KALSNLQEIDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRLEVLRMC 711

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 121
            C NL+ LP +   L +L+ L +S C  LR++P+ I  L KLE + ++ CS
Sbjct: 712 SCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKCS 762

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 17/152 (11%)

Query: 8   FLILKNLVNLKEIDLSYSRQLKKLPDLSQA----RNLENLLLKAC---SSLVETHSSI-Q 59
           F I  +L NL+ + L    +   +P+LS +    +NL  L L  C   +S  +T   I Q
Sbjct: 405 FPIPTSLTNLRSLWL----ERVHVPELSSSMIPLKNLHKLYLIICKINNSFDQTAIDIAQ 460

Query: 60  YLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119
              KL  + +  C +L  LPS++C + SL  + ++ C N++ +P++I  L  L+LL L  
Sbjct: 461 IFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQLLRLYA 520

Query: 120 CSKLLSLP----ELPCNLFSVGVRRCTSLEAL 147
           C +L SLP    ELP  L  V +  C SL +L
Sbjct: 521 CPELKSLPVEICELP-RLVYVDISHCLSLSSL 551

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 159/387 (41%), Gaps = 57/387 (14%)

Query: 1    MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQY 60
            ++ T +R + + N  +  ++ L   +    L + S   ++E++ L+  ++L    S+   
Sbjct: 690  LQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFS---DVEHIDLECVTNLATVTSNNHV 746

Query: 61   LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120
            + KLV L+M+ C NL  LP  +  L SL+ LYLSGCS L +I     NL KL +      
Sbjct: 747  MGKLVCLNMKYCSNLRGLPD-MVSLESLKVLYLSGCSELEKIMGFPRNLKKLYV----GG 801

Query: 121  SKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNEL-- 178
            + +  LP+LP +L  +    C  L+   S +  F  +  H    F  S+C +     +  
Sbjct: 802  TAIRELPQLPNSLEFLNAHGCKHLK---SINLDFEQLPRH----FIFSNCYRFSSQVIAE 854

Query: 179  ---KGIA-------EDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFR- 227
               KG+        ++ L K  +      M  ++ + ++ +     +    +++  W + 
Sbjct: 855  FVEKGLVASLARAKQEELIKAPEVIICIPMDTRQRSSFRLQAGRNAM----TDLVPWMQK 910

Query: 228  -FSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIRFKIPSHD-----------WYVRTI 275
              S    S+    Q D+ N+  L I      RC   +K  ++            W     
Sbjct: 911  PISGFSMSVVVSFQDDYHNDVGLRI------RCVGTWKTWNNQPDRIVERFFQCWAPTEA 964

Query: 276  DYVESDHLFMGY--YFFHGDKGDSRQDFEKALFKIYFYNHTGRA---MRCCGVKKCGIRL 330
              V +DH+F+ Y       D  ++         K  F+  +G        C V +CG+ +
Sbjct: 965  PKVVADHIFVLYDTKMHPSDSEENHISMWAHEVKFEFHTVSGENNPLGASCKVTECGVEV 1024

Query: 331  LTA--GDDFLGINLRSQQNFYSNEEEE 355
            +TA  GD  +   +R  +     E+E+
Sbjct: 1025 ITAATGDTSVSGIIRESETITIIEKED 1051

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 10/149 (6%)

Query: 8   FLILKNLVNLKEIDLS-YSRQLKKLPDLSQARNLENLLLKACS---SLVETHSSI--QYL 61
           F  L +L NLK I L   S  L  +P L Q  +L+ L L  CS      +T   +    L
Sbjct: 590 FSCLSSLPNLKRIRLEKVSITLLDIPQL-QLSSLKKLSLVMCSFGEVFYDTEDIVVSNAL 648

Query: 62  SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 121
           SKL  +D+  C +L+ LP  + E++SL+ L ++ C+ L ++PE+I NLS+LE+L L +  
Sbjct: 649 SKLQEIDIDYCYDLDELPYWISEIVSLKTLSITNCNKLSQLPEAIGNLSRLEVLRLCSSM 708

Query: 122 KLLSLPELP---CNLFSVGVRRCTSLEAL 147
            L  LPE      NL  + +  C  L  L
Sbjct: 709 NLSELPEATEGLSNLRFLDISHCLGLRKL 737

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 10/144 (6%)

Query: 17  LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNL 75
           L E++LS +  L +LPD +S+  NL+ L+++ CS L +T  +++ L+ L   D+  C  L
Sbjct: 751 LHEVNLSET-NLSELPDKISELSNLKELIIRKCSKL-KTLPNLEKLTNLEIFDVSGCTEL 808

Query: 76  NRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP--CNL 133
             +  S   L  L ++ LS  +NL  +P  I  LS L+ L L+NCSKL +LP L    +L
Sbjct: 809 ETIEGSFENLSCLHKVNLSE-TNLGELPNKISELSNLKELILRNCSKLKALPNLEKLTHL 867

Query: 134 FSVGVRRCTSL----EALSSFSFL 153
               V  CT+L    E+  S S+L
Sbjct: 868 VIFDVSGCTNLDKIEESFESMSYL 891

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 17/152 (11%)

Query: 8   FLILKNLVNLKEIDLSYSRQLKKLPDLSQA----RNLENLLLKAC---SSLVETHSSI-Q 59
           F I  NL  LK + L    Q   +P+LS +    +NL  L L  C   +SL +T   I Q
Sbjct: 593 FSIFTNLAKLKSLWL----QRVHVPELSSSTVPLQNLHKLSLIFCKINTSLDQTELDIAQ 648

Query: 60  YLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119
              KL  L +  C +L  LPS++C + SL  + ++ C  ++ +P+++  L  L+LL L  
Sbjct: 649 IFPKLSDLTIDHCDDLLELPSTICGITSLNSISITNCPRIKELPKNLSKLKALQLLRLYA 708

Query: 120 CSKLLSLP----ELPCNLFSVGVRRCTSLEAL 147
           C +L SLP    ELP  L  V + +C SL +L
Sbjct: 709 CHELNSLPVEICELP-RLKYVDISQCVSLSSL 739

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
255564976	944	TMV resistance protein N, putative [Rici	0.806	0.312	0.313	1e-30
255561510	1018	TMV resistance protein N, putative [Rici	0.702	0.252	0.355	5e-30
255544956	1403	leucine-rich repeat containing protein,	0.669	0.174	0.341	1e-23
357468519	1087	Tir-nbs-lrr resistance protein [Medicago	0.740	0.249	0.296	7e-23
147858652	1241	hypothetical protein VITISV_004290 [Viti	0.617	0.182	0.317	2e-22
147858878	607	hypothetical protein VITISV_026993 [Viti	0.743	0.448	0.299	2e-22
297791265	1124	hypothetical protein ARALYDRAFT_917001 [	0.879	0.286	0.266	3e-22
357468503	1088	Tir-nbs-lrr resistance protein [Medicago	0.658	0.221	0.32	3e-22
357468511	1100	Tir-nbs-lrr resistance protein [Medicago	0.737	0.245	0.325	3e-22
15238668	1197	TIR-NBS-LRR class disease resistance pro	0.754	0.230	0.289	4e-22

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 168/370 (45%), Gaps = 75/370 (20%)

Query: 1   MERTNLRFLILKN--LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSI 58
           M  ++++FL   +  L  L  I+LS S+ L +LPD S+A NLE + L+ C SL +  SSI
Sbjct: 612 MPHSHVKFLWEGDQCLKKLNSINLSDSQHLIRLPDFSEALNLEYINLEGCISLAQVPSSI 671

Query: 59  QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 118
            YL+KL  L+++ CK L  +P SL +L SL++L LSGCSNL    +   N+ +L      
Sbjct: 672 GYLTKLDILNLKDCKELRSIP-SLIDLQSLRKLNLSGCSNLNHCQDFPRNIEEL------ 724

Query: 119 NCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNEL 178
            C    ++ ELP            S+E LS  +F            +++ +C +LDQN  
Sbjct: 725 -CLDGTAIEELP-----------ASIEDLSELTF------------WSMENCKRLDQNSC 760

Query: 179 KGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFK 238
             IA DA + IQ+ AT+  +       +          FPG+EIP W  +   GSSI  K
Sbjct: 761 CLIAADAHKTIQRTATAAGIHSLPSVSFG---------FPGTEIPDWLLYKETGSSITVK 811

Query: 239 PQSDWINN--EYLGIAFCAVLR-------------CRIRFKIPSHDWYVRTI-------- 275
              +W  N   +LG A C V++             C   FK    D +V           
Sbjct: 812 LHPNWHRNPSRFLGFAVCCVVKFTHFIDINNIYVICECNFKTNHDDHHVVNCFLQGLNNG 871

Query: 276 ----DYVESDHLFMGYYF------FHGDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKK 325
               D V+S H+++GY F        G        +E+  FK Y     G  +    V K
Sbjct: 872 KDESDLVKSQHVYIGYDFGIYLRAVKGTYPGRLYHYEEVTFKFYAKKMVGHTVAWRKVDK 931

Query: 326 CGIRLLTAGD 335
           CG+ LL A D
Sbjct: 932 CGVHLLYAQD 941

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561510|ref|XP_002521765.1| TMV resistance protein N, putative [Ricinus communis] gi|223538978|gb|EEF40575.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 149/290 (51%), Gaps = 33/290 (11%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           +++LVNLK IDLSYSR L ++PDLS+A+NLE + L  C +L    SS+Q L+KLV LD+ 
Sbjct: 624 VQHLVNLKRIDLSYSRHLTRIPDLSKAQNLERMELTTCQNLAAVSSSVQCLNKLVFLDLS 683

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPE-----SIINLSKLELLHLKNCSKLLS 125
            C NL  LP  +  L SL+ L L+ CSNL ++PE       + LS   +  L    +L  
Sbjct: 684 DCTNLRSLPGGI-NLNSLKALVLTSCSNLAKLPEISGDIRFLCLSGTAIEELPQ--RLRC 740

Query: 126 LPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDA 185
           L ++P  +  +    CTSLEA+     L+      + +Y++ ++C  LDQ E   +AEDA
Sbjct: 741 LLDVPPCIKILKAWHCTSLEAIPRIKSLWEP----DVEYWDFANCFNLDQKETSNLAEDA 796

Query: 186 LQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWIN 245
                   T+     K+  DYK  P  G   FPGSE+P+ F    + SS+ F   S+   
Sbjct: 797 QWSFLVMETA----SKQVHDYKGNP--GQFCFPGSEVPESFCNEDIRSSLTFMLPSN--G 848

Query: 246 NEYLGIAFCAVLR-------------CRIRFKIPSHDWYVRTIDYVESDH 282
            + +GIA C VL              C+  FK  + D  + T  Y   +H
Sbjct: 849 RQLMGIALCVVLGSEEPYSVSKVRCCCKCHFKSTNQDDLIFTSQYGSINH 898

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 134/275 (48%), Gaps = 30/275 (10%)

Query: 14   LVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 72
            L +L E++LS    L  LP  + + + LE L L     L    SSI+ L +L  + +  C
Sbjct: 939  LSSLVELNLSQCPMLGSLPFSIGELKCLEKLYLCGLRRLRSIPSSIRELKRLQDVYLNHC 998

Query: 73   KNLNRLPS----------------------SLCELISLQRLYLSGCSNLRRIPESIINLS 110
              L++LPS                      SL  L SLQ L L G +N  RIP +I  LS
Sbjct: 999  TKLSKLPSLSGCSSLRDLVLSYSGIVKVPGSLGYLSSLQVLLLKG-NNFMRIPATIRQLS 1057

Query: 111  KLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA---MSPHNDQYFNL 167
             LE+L +  C +L +LPELP  +  +    CTSL+ +SS    F      SP +   F  
Sbjct: 1058 WLEVLDISYCKRLKALPELPQRIRVLVAHNCTSLKTVSSPLIQFQESQEQSPDDKYGFTF 1117

Query: 168  SDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFR 227
            ++C+ L++N    I E AL K Q  AT+    L+  T Y+       + FPGSEIP+ FR
Sbjct: 1118 ANCVSLEKNARSNIVESALLKTQHLATA---VLELLTSYEEILVSPVVCFPGSEIPECFR 1174

Query: 228  FSSMGSSIEFKPQSDWINNEYLGIAFCAVLRCRIR 262
            + + G+S+     S W NN+ +G  FCAV+    R
Sbjct: 1175 YQNTGASVTTLLPSKWHNNKLVGFTFCAVIELENR 1209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468519|ref|XP_003604544.1| Tir-nbs-lrr resistance protein [Medicago truncatula] gi|355505599|gb|AES86741.1| Tir-nbs-lrr resistance protein [Medicago truncatula]

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 155/347 (44%), Gaps = 76/347 (21%)

Query: 11   LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
            ++NL+NLKE+ L +SR LK+LPD S+A NLE L +  CS L   H SI  L KL  LD+ 
Sbjct: 671  VQNLLNLKEVKLFFSRYLKELPDFSKALNLEVLDIHFCSQLTSVHPSILSLEKLEKLDLS 730

Query: 71   LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINL--------------------S 110
             C +L  L S      SL+ L L  C N+R+   + +N+                    S
Sbjct: 731  HCTSLTELTSD-THTSSLRYLNLKFCKNIRKFSVTSVNMTELDLRYTQVNTLPASFGCQS 789

Query: 111  KLELLHLKNCS-----------------------KLLSLPELPCNLFSVGVRRCTSLEAL 147
            KLE+LHL NCS                       KL +LP LP +L  +  + CT+L+ +
Sbjct: 790  KLEILHLGNCSIENFPSCFKNLIKLQYLEVRYCQKLQNLPVLPPSLEILLAQECTALKTV 849

Query: 148  SSFSFLFSAMSPH---NDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEE- 203
                 LF +++     N +    ++CLKLD++ L  I  +A   I + A       ++E 
Sbjct: 850  -----LFPSIAEQFKENRKRVVFANCLKLDEHSLANIVFNAQINITKFAYQHVSASRDEF 904

Query: 204  ----TDYKYKPSCGGIY-FPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVLR 258
                 +Y    S   +Y +PGS +P WF + +    +     S   ++ +LG  FC VL 
Sbjct: 905  HNKFNNYNEDDSHQALYVYPGSCVPDWFEYKTTTDYVAIDLPSSTSHSRFLGYIFCFVLG 964

Query: 259  CR------IRFKIP--------SHDWY----VRTIDYVESDHLFMGY 287
                    ++F I           D++     R    + SDH+FM Y
Sbjct: 965  GNRLIVDMLKFNITLCVEGQGKEEDYFELYISRPSSIIVSDHVFMIY 1011

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858652|emb|CAN82538.1| hypothetical protein VITISV_004290 [Vitis vinifera]

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 127/287 (44%), Gaps = 61/287 (21%)

Query: 1   MERTNLRFLILKNLV--NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSI 58
           M +++L  L   N V  NLK IDLS S+ L + PD S+  NL+ L  +      E  SSI
Sbjct: 675 MTKSHLTRLWEGNRVFKNLKYIDLSDSKYLAETPDFSRVXNLKXLXFE------ELPSSI 728

Query: 59  QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCS----------NLRRIPESIIN 108
            Y +KLV LD++ C+ L  LPSS+C+L  L+ L LSGCS          NL  +P  +  
Sbjct: 729 AYATKLVVLDLQNCEKLLSLPSSICKLAHLETLSLSGCSRLGKPQVNSDNLDALPRILDR 788

Query: 109 LSKLELLHLKNCSKLLSLPELPCNLFSVGVR-RCTSLEALSSFSFLF------------- 154
           LS L  L L++C  L +LP LP ++  +     CTSLE +S  S                
Sbjct: 789 LSHLRELQLQDCRSLRALPPLPSSMELINASDNCTSLEYISPQSVFLCFGGSIFGNCFQL 848

Query: 155 ----SAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEETDYKYKP 210
               S M PH  +          DQ+  K   +     +Q   ++               
Sbjct: 849 TKYQSKMGPHLXRM-----ATHFDQDRWKSAYDQQYPNVQVPFST--------------- 888

Query: 211 SCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVL 257
                 FPGS IP WF   S G  ++     DW ++ +LG A  AV+
Sbjct: 889 -----VFPGSTIPDWFMHYSKGHEVDIDVDPDWYDSSFLGFALSAVI 930

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858878|emb|CAN82897.1| hypothetical protein VITISV_026993 [Vitis vinifera]

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 145/317 (45%), Gaps = 45/317 (14%)

Query: 8   FLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTL 67
           F  +  LV+L+ + LS   +L+K  D+SQ       L    +++ E  SSI Y +KL  L
Sbjct: 198 FPGISQLVSLETLILSGCSKLEKFLDISQHMPCLRQLYLDGTAITELPSSIDYATKLEIL 257

Query: 68  DMRLCKNLNRLPSSLCELISLQRLYLSGCS----------NLRRIPESIINLSKLELLHL 117
           D+R C+ L  LPSS+C+L  L  L LSGCS          NL  +P ++  L  L++L L
Sbjct: 258 DLRNCRKLRSLPSSICKLTLLWCLSLSGCSDLGKCEVNSGNLDALPGTLDQLCSLKMLFL 317

Query: 118 KNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNE 177
           +NC  L +LP LP +L  +    C SLE +S  S +FS        + N S   K     
Sbjct: 318 QNCWSLRALPALPSSLVILNASNCESLEDISPQS-VFSLC--RGSIFRNCSKLTKFQSRM 374

Query: 178 LKGIAEDALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRF-SSMGSSIE 236
            + +   A +  Q+K  S + +   E D ++        FPGS IP WF+  S     I+
Sbjct: 375 ERDLQSMAAKVDQEKWRSTFEEQNSEVDVQF-----STVFPGSGIPDWFKHRSKRWRKID 429

Query: 237 FKPQSDWINNEYLGIAFCAVLR-------------CRIRFKIPSHDW-----------YV 272
            K   +W  + +LG A CAV+              C + F+  +  W           + 
Sbjct: 430 MKVSPNWYTSNFLGFALCAVVAPKKKSLTSSWSAYCDLEFRALNSKWKSNRSFHIFDVFT 489

Query: 273 RTID--YVESDHLFMGY 287
           R +    + SDH+++ Y
Sbjct: 490 RGLKDITIGSDHVWLAY 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791265|ref|XP_002863517.1| hypothetical protein ARALYDRAFT_917001 [Arabidopsis lyrata subsp. lyrata] gi|297309352|gb|EFH39776.1| hypothetical protein ARALYDRAFT_917001 [Arabidopsis lyrata subsp. lyrata]

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 170/416 (40%), Gaps = 94/416 (22%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSK 63
           T LR L   NL +L+ + LS    L++   +S+  NL+ L L   +++ +  S I  L K
Sbjct: 509 TGLRHLPDINLSSLRTLILSGCSNLQEFRLISE--NLDYLYLDG-TAIEDLPSEIVKLQK 565

Query: 64  LVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIP-------------------- 103
           L+ L+++ C+ L  LP  + +L SL+ L LSGCSNL+  P                    
Sbjct: 566 LILLNLKECRRLGSLPECIGKLKSLKELILSGCSNLKSFPNVEENMENFRVLLLDGTSIE 625

Query: 104 ------------------------------ESIINLSKLELLHLKNCSKLLSLPELPCNL 133
                                           I  L  L+ L LK C KL  L  LP NL
Sbjct: 626 EVPKILHGNNSISFLRRLSLSRNDVISSLGSDISQLYHLKWLDLKYCKKLRCLSTLPPNL 685

Query: 134 FSVGVRRCTSLEALSS-FSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK 192
             +    C SLE ++S  +FL      H+   F  ++C KL+      IA    +K Q  
Sbjct: 686 QCLDAHGCISLETVTSPLAFLMPMEDIHS--MFIFTNCCKLNDAAKNDIASHIRRKCQLI 743

Query: 193 ATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIA 252
           +            + ++   G  Y PG E+P WF   +  S +E K    W +N++LG+A
Sbjct: 744 SDD-----HHNGSFVFRALIGTCY-PGYEVPPWFSHQAFDSVVERKLPPHWCDNKFLGLA 797

Query: 253 FCAV--------------LRCRI----------RFKIPSHDWYVRTID--YVESDHLFMG 286
            CA+              ++C            RF +P   W+    +   VESDH+F+G
Sbjct: 798 LCAIVSFHDYRDQNNRLLVKCTCEFENLDASCSRFSVPVGGWFEPGNEPRTVESDHVFIG 857

Query: 287 YYFFHGDKGDSRQDFE------KALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDD 336
           Y  +   K    ++++      KA  +      TG  ++ C V KCG  L+   DD
Sbjct: 858 YISWLNIKKLQEEEYKKGCVPTKAKLRFIVTEGTGEEIKQCEVVKCGFGLVYEPDD 913

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468503|ref|XP_003604536.1| Tir-nbs-lrr resistance protein [Medicago truncatula] gi|355505591|gb|AES86733.1| Tir-nbs-lrr resistance protein [Medicago truncatula]

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 137/300 (45%), Gaps = 59/300 (19%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLD-- 68
           ++NL+NLKE+ L YSR LK+LPD S+A NLE L +  C  L   H SI  L  L  LD  
Sbjct: 681 VQNLLNLKEVKLFYSRFLKQLPDFSKALNLEVLDIHFCGQLTSVHPSIFSLENLEKLDLS 740

Query: 69  ---------------------MRLCKN--------------------LNRLPSSLCELIS 87
                                ++ CKN                    +N LP+S      
Sbjct: 741 HCTALTELTSDTHSSSLRYLSLKFCKNIRKFSVTSENMIELDLQYTQINALPASFGRQTK 800

Query: 88  LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEAL 147
           L+ L+L  CS + R P    NL +L+ L ++ C KL +LPELP +L  +  R CTSLE  
Sbjct: 801 LEILHLGNCS-IERFPSCFKNLIRLQYLDIRYCLKLQTLPELPQSLEVLHARGCTSLE-- 857

Query: 148 SSFSFLFSAMSPH---NDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKLKEE- 203
              S LF ++      N      ++CLKLD++ L  IA +A     + A      L+ + 
Sbjct: 858 ---SVLFPSIPEQFKENRYRVVFANCLKLDEHSLANIAFNAQINNMKFACQHVSALEHDF 914

Query: 204 ----TDYK-YKPSCGGIY-FPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVL 257
                DYK +  S   IY +PG+ +P+WF + +    +     S   ++  LG  FC VL
Sbjct: 915 HNKFNDYKDHNDSYQAIYVYPGNSVPEWFEYMTTTDYVVIDLSSSTSSSPLLGFIFCFVL 974

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468511|ref|XP_003604540.1| Tir-nbs-lrr resistance protein [Medicago truncatula] gi|355505595|gb|AES86737.1| Tir-nbs-lrr resistance protein [Medicago truncatula]

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 152/307 (49%), Gaps = 37/307 (12%)

Query: 11   LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKL---VTL 67
            +++L+NLKE+ LS+S  LK+LPD S+A NL+ L ++ C  L   H SI  L KL   V L
Sbjct: 704  VQDLINLKEVTLSFSEDLKELPDFSKAINLKVLNIQRCYMLTSVHPSIFSLDKLENIVEL 763

Query: 68   DMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 127
            D+  C  +N LPSS      L+ L L G + +  IP SI +L++L  L + +CS+LL+LP
Sbjct: 764  DLSRCP-INALPSSFGCQSKLETLVLRG-TQIESIPSSIKDLTRLRKLDISDCSELLALP 821

Query: 128  ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQ 187
            ELP +L ++ V  C SL+++  F    +     N +     +C KLD+  L  I  +   
Sbjct: 822  ELPSSLETLLV-DCVSLKSV-FFPSTVAEQLKENKKRIEFWNCFKLDERSLINIGLNLQI 879

Query: 188  KI-----QQKATSWWMKLKEETDYK-YKPSCGGIY-FPGSEIPKWFRFSSMGSS--IEFK 238
             +     Q  +T    K++   DYK    S   +Y +PGS +P+W  + +  +   ++  
Sbjct: 880  NLMEFAYQHLSTLEHDKVESYVDYKDILDSYQAVYVYPGSSVPEWLEYKTTKNDMIVDLS 939

Query: 239  PQSDWINNEYLGIAFCAVLR-----CRI-RFKIPSHD------------WYVRTIDYVES 280
            P      +  LG  FC +L      C I  F I + D            +  RT  Y E 
Sbjct: 940  PPH---LSPLLGFVFCFILAEDSKYCDIMEFNISTFDGEGDGEKDGVDIYMYRTCCYTEL 996

Query: 281  DHLFMGY 287
            DH+ M Y
Sbjct: 997  DHVCMIY 1003

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238668|ref|NP_197290.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|332005098|gb|AED92481.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 159/352 (45%), Gaps = 76/352 (21%)

Query: 4    TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSK 63
            T+L+ L    L++LK + LS   + K    +S    LE L L   +++ E    I  L +
Sbjct: 718  TSLKSLPEIQLISLKTLILSGCSKFKTFQVISD--KLEALYLDG-TAIKELPCDIGRLQR 774

Query: 64   LVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELL-------- 115
            LV L+M+ CK L RLP SL +L +L+ L LSGCS L   PE+  N+S+LE+L        
Sbjct: 775  LVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEILLLDETAIK 834

Query: 116  -----------------------------------HLKNCSKLLSLPELPCNLFSVGVRR 140
                                               HLK C  L  +P+LP NL  + V  
Sbjct: 835  DMPKILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCKNLTHVPQLPPNLQYLNVHG 894

Query: 141  CTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSWWMKL 200
            C+SL+ ++    + S    H +  F  ++C +L+Q   + I   A +K    A++  +K 
Sbjct: 895  CSSLKTVAK-PLVCSIPMKHVNSSFIFTNCNELEQAAKEEIVVYAERKCHLLASA--LKR 951

Query: 201  KEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLGIAFCAVL--- 257
             +E+       C    FPG E+P WF   ++GS +EF+    W +N   GIA C V+   
Sbjct: 952  CDESCVPEILFC--TSFPGCEMPSWFSHDAIGSMVEFELPPHWNHNRLSGIALCVVVSFK 1009

Query: 258  RCR------IRFKIPSHD---------WYVRTI-------DYVESDHLFMGY 287
             C+      ++F    ++         W V ++       + VESDH+F+GY
Sbjct: 1010 NCKSHANLIVKFSCEQNNGEGSSSSITWKVGSLIEQDNQEETVESDHVFIGY 1061

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.508	0.446	0.310	1.7e-21
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.633	0.193	0.299	2.6e-20
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.650	0.196	0.300	2.9e-20
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.344	0.105	0.465	4.4e-20
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.505	0.155	0.368	7.1e-20
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.644	0.191	0.295	1.3e-19
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.352	0.105	0.458	1.5e-19
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.352	0.128	0.458	3.3e-19
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.622	0.192	0.294	5e-18
TAIR|locus:2175070	1114	AT5G41740 [Arabidopsis thalian	0.319	0.105	0.45	6.5e-18

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
 Identities = 60/193 (31%), Positives = 97/193 (50%)

Query:    68 DMRLCK-NLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSL 126
             DM L   NL + P +   L SLQ L LS  +++  +P SI  L  L+ L+LKNC  L+SL
Sbjct:    33 DMYLTDCNLYKFPDNFSCLSSLQSLCLSR-NSIENLPGSIKKLHHLKSLYLKNCKNLISL 91

Query:   127 PELPCNLFSVGVRRCTXXXXXXXXXXXXXXXXPHNDQYFNLSDCLKLDQNELKGIAEDAL 186
             P LP N + + V  C                   +   F  +DC KL+++  + I     
Sbjct:    92 PVLPSNQY-LDVHGCISLETVSKPMTLLVIAEKTHST-FVFTDCYKLNRDAQEKIVAHTQ 149

Query:   187 QKIQQKAT-SWWMKLKEET-DYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWI 244
              K Q  A  S+ +  K ++ +   +P    + FPG+++P WFR   +GSS+E    S W 
Sbjct:   150 LKSQILANRSFQLNHKVQSLELVLEP-LSAVSFPGNDLPLWFRHQRIGSSMETNLPSHWC 208

Query:   245 NNEYLGIAFCAVL 257
             +++++G++ C V+
Sbjct:   209 DDKFIGLSLCTVV 221

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
 Identities = 74/247 (29%), Positives = 123/247 (49%)

Query:    14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKL--VTLDMR 70
             L  L  +++   ++LK+LPD L Q + LE L+L  CS L E   +   +S+L  + LD  
Sbjct:   772 LQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEILLLDET 831

Query:    71 LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP 130
               K++   P    +++S++RL L+    + R+P+ +   S+L+ LHLK C  L  +P+LP
Sbjct:   832 AIKDM---P----KILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCKNLTHVPQLP 884

Query:   131 CNLFSVGVRRCTXXXXXXXXXXXXXXXXPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQ 190
              NL  + V  C+                 H +  F  ++C +L+Q   + I   A +K  
Sbjct:   885 PNLQYLNVHGCSSLKTVAKPLVCSIPMK-HVNSSFIFTNCNELEQAAKEEIVVYAERKCH 943

Query:   191 QKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYLG 250
               A++  +K  +E+       C    FPG E+P WF   ++GS +EF+    W +N   G
Sbjct:   944 LLASA--LKRCDESCVPEILFCTS--FPGCEMPSWFSHDAIGSMVEFELPPHWNHNRLSG 999

Query:   251 IAFCAVL 257
             IA C V+
Sbjct:  1000 IALCVVV 1006

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
 Identities = 76/253 (30%), Positives = 114/253 (45%)

Query:    11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYL-----SKLV 65
             +K  +   EI L     +K+ P++S   NL+  +   C  +++  + +  L     S L 
Sbjct:   790 IKEKMECLEILLMDGTSIKQTPEMSCLSNLK--ICSFCRPVIDDSTGLVVLPFSGNSFLS 847

Query:    66 TLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS 125
              L +  C N+++LP     L SL+ L LS  +N+  +PESI  L  L LL LK+C +L S
Sbjct:   848 DLYLTNC-NIDKLPDKFSSLRSLRCLCLSR-NNIETLPESIEKLYSLLLLDLKHCCRLKS 905

Query:   126 LPELPCNLFSVGVRRC-TXXXXXXXXXXXXXXXXPHNDQYFNLSDCLKLDQNELKGIAED 184
             LP LP NL  +    C +                 H    F  +DC KL+Q E + I   
Sbjct:   906 LPLLPSNLQYLDAHGCGSLENVSKPLTIPLVTERMHTT--FIFTDCFKLNQAEKEDIVAQ 963

Query:   185 ALQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWI 244
             A  K Q  A +   +          P    + FPG +IP WF    MGS IE      W 
Sbjct:   964 AQLKSQLLART--SRHHNHKGLLLDPLVA-VCFPGHDIPSWFSHQKMGSLIETDLLPHWC 1020

Query:   245 NNEYLGIAFCAVL 257
             N++++G + C V+
Sbjct:  1021 NSKFIGASLCVVV 1033

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
 Identities = 60/129 (46%), Positives = 80/129 (62%)

Query:     1 MERTNLRFLI--LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSI 58
             M  +NLR L    K L NLK +DLSYS  LK+LP+LS A NLE L L+ CSSLVE  SSI
Sbjct:   698 MRSSNLRKLWEGTKQLRNLKWMDLSYSSYLKELPNLSTATNLEELKLRNCSSLVELPSSI 757

Query:    59 QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 118
             + L+ L  LD+  C +L +LP+ +     L+ L L  CS+L  +P SI   + L+ L++ 
Sbjct:   758 EKLTSLQILDLENCSSLEKLPA-IENATKLRELKLQNCSSLIELPLSIGTATNLKQLNIS 816

Query:   119 NCSKLLSLP 127
              CS L+ LP
Sbjct:   817 GCSSLVKLP 825

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.1e-20, P = 7.1e-20
 Identities = 70/190 (36%), Positives = 98/190 (51%)

Query:    13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 72
             N +NL+++DL+    L +LP    A NL+ LLL+ CS+LVE  SSI     L  LD+  C
Sbjct:   721 NAINLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYC 780

Query:    73 KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN 132
              +L RLPSS+   I+L  L L+GCSNL  +P SI N   L+ L L+ C+KLL LP    N
Sbjct:   781 SSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGN 840

Query:   133 LFSVGVRRCTXXXXXXXXXXXXXXXXPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK 192
               ++ ++                     N  Y NLS+C  L +  L  I    LQK+Q+ 
Sbjct:   841 --AINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLS-IGN--LQKLQEL 895

Query:   193 ATSWWMKLKE 202
                   KL++
Sbjct:   896 ILKGCSKLED 905

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 73/247 (29%), Positives = 117/247 (47%)

Query:    13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71
             NL  L  ++L   + L  LPD L + ++L+ L L  CS L         +  L+ L +  
Sbjct:   769 NLHRLIFLNLKDCKNLATLPDCLGELKSLQELKLSRCSKLKIFPDVTAKMESLLVLLLD- 827

Query:    72 CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPC 131
               ++  LP S+  L SL+RL LS   N+R +   + ++  L+ L LK C  L SLP LP 
Sbjct:   828 GTSIAELPCSIFHLSSLRRLCLSRNDNIRTLRFDMGHMFHLKWLELKYCKNLTSLPILPP 887

Query:   132 NLFSVGVRRCTXXXXXXXXXXXXXXXXPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 191
             NL  +    CT                  +  +   ++C +L+Q     ++++A+    Q
Sbjct:   888 NLQCLNAHGCTSLRTVASPQTLPTPTEQIHSTFI-FTNCHELEQ-----VSKNAIISYVQ 941

Query:   192 KATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFK-PQSDWINNEYLG 250
             K +      +   D+ YK S  G  FPG EIP WF   ++GS +  + PQ+ W ++  +G
Sbjct:   942 KKSKLMSADRYSPDFVYK-SLIGTCFPGCEIPAWFNHQALGSVLILELPQA-WNSSRIIG 999

Query:   251 IAFCAVL 257
             IA C V+
Sbjct:  1000 IALCVVV 1006

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 61/133 (45%), Positives = 82/133 (61%)

Query:    12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71
             K L NLK +DLS S  LK+LP+LS A NLE L L+ CSSLVE  SSI+ L+ L  L ++ 
Sbjct:   713 KQLRNLKWMDLSNSEDLKELPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQR 772

Query:    72 CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP--EL 129
             C +L  LPS       L+ LYL  CS+L ++P SI N + L+ L L NCS+++ LP  E 
Sbjct:   773 CSSLVELPS-FGNATKLEELYLENCSSLEKLPPSI-NANNLQQLSLINCSRVVELPAIEN 830

Query:   130 PCNLFSVGVRRCT 142
               NL  + +  C+
Sbjct:   831 ATNLQKLDLGNCS 843

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 3.3e-19, P = 3.3e-19
 Identities = 61/133 (45%), Positives = 84/133 (63%)

Query:    12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71
             K L NLK +DLS S  LK+LP+LS A NLE L L+ CSSLVE  SSI+ L+ L  LD+  
Sbjct:   667 KQLRNLKWMDLSDSEDLKELPNLSTATNLEELKLRRCSSLVELPSSIEKLTSLQILDLHS 726

Query:    72 CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP--EL 129
             C +L  LPS       L++L L  CS+L ++P SI N + L+ L L+NCS+++ LP  E 
Sbjct:   727 CSSLVELPS-FGNATKLEKLDLENCSSLVKLPPSI-NANNLQELSLRNCSRVVELPAIEN 784

Query:   130 PCNLFSVGVRRCT 142
               NL  + ++ C+
Sbjct:   785 ATNLRELKLQNCS 797

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 70/238 (29%), Positives = 112/238 (47%)

Query:    13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 72
             NL  L++++LS    L KLP +    NL++L L  CSSL+E   +I+  + L TL +  C
Sbjct:   822 NLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGC 881

Query:    73 KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN 132
              NL  LPSS+  + +LQ LYL+GCS+L+ +P  + N   L+ L L  CS L+ LP     
Sbjct:   882 SNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWR 941

Query:   133 LFSVGVRRCTXXXXXXXXXXXXXXXXPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK 192
             + ++     +                P +    +  DC  L Q  L    ++   KI   
Sbjct:   942 ISNLSYLDVSNCSSLLELNLVSHPVVP-DSLILDAGDCESLVQR-LDCFFQNP--KIVLN 997

Query:   193 ATSWWMKLKEETDYKYKPS-CGGIYFPGSEIPKWFRFSSMGSSIEFKPQSDWINNEYL 249
               + +   +E  D   + S C     PG ++P +F + + G S+  K     +N +YL
Sbjct:   998 FANCFKLNQEARDLIIQTSACRNAILPGEKVPAYFTYRATGDSLTVK-----LNQKYL 1050

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2175070 AT5G41740 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 6.5e-18, Sum P(2) = 6.5e-18
 Identities = 54/120 (45%), Positives = 78/120 (65%)

Query:     1 MERTNLRFLI--LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSI 58
             M R+NL  L   ++ L NLK I+L+ S +LK++P+LS+A NLE L L++C SLVE  SSI
Sbjct:   596 MPRSNLELLWGGIEPLPNLKIINLNRSYRLKEIPNLSKATNLERLTLESCLSLVELPSSI 655

Query:    59 QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 118
               L KL  LD++ C  L  +P+++  L SL+RL +SGCS LR  P+   N+  L   ++K
Sbjct:   656 SNLHKLEILDVKFCSMLQVIPTNI-NLASLERLDVSGCSRLRTFPDISSNIKTLIFGNIK 714

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-23
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  101 bits (252), Expect = 4e-23
 Identities = 60/120 (50%), Positives = 74/120 (61%), Gaps = 8/120 (6%)

Query: 14  LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 73
           L  L+ IDL  S+ LK++PDLS A NLE L L  CSSLVE  SSIQYL+KL  LDM  C+
Sbjct: 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692

Query: 74  NLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNL 133
           NL  LP+ +  L SL RL LSGCS L+  P+   N+S L+L          ++ E P NL
Sbjct: 693 NLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE-------TAIEEFPSNL 744

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 57/191 (29%), Positives = 79/191 (41%), Gaps = 45/191 (23%)

Query: 4   TNLRFLILKNLVNLKEIDLS--YSRQLKKLPDLSQARNLEN------------LLLKACS 49
           TNL  L L +  +L E+  S  Y  +L+ L D+S+  NLE             L L  CS
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDL-DMSRCENLEILPTGINLKSLYRLNLSGCS 715

Query: 50  ---SLVETHSSIQYLSKLVTLDMRLCKNL---NRLPSSLCELI----------------- 86
              S  +  ++I +L    T       NL   N     LCE+                  
Sbjct: 716 RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM 775

Query: 87  ---SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP---ELPCNLFSVGVRR 140
              SL RL+LS   +L  +P SI NL KLE L ++NC  L +LP    L  +L S+ +  
Sbjct: 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE-SLESLDLSG 834

Query: 141 CTSLEALSSFS 151
           C+ L      S
Sbjct: 835 CSRLRTFPDIS 845

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 54/234 (23%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSL-----VETHSSIQYLSKLV 65
           ++NL  L+ +++     L+ LP      +LE+L L  CS L     + T+ S   LS+  
Sbjct: 798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-- 855

Query: 66  TLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS 125
                    +  +P  + +  +L  L ++GC+NL+R+  +I  L  LE +   +C    +
Sbjct: 856 -------TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG---A 905

Query: 126 LPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDA 185
           L E   N     V   T     +  S L S +        N  +C  LDQ  L       
Sbjct: 906 LTEASWNGSPSEVAMATD----NIHSKLPSTVC------INFINCFNLDQEAL------- 948

Query: 186 LQKIQQKATSWWMKLKEETDYKYKPSCGGIYFPGSEIPKWFRFSSMGSSIEFKP 239
                         L++++ +K       +   G E+P +F   + G+S+   P
Sbjct: 949 --------------LQQQSIFKQ------LILSGEEVPSYFTHRTTGASLTNIP 982

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 69
            ++ L  L+E+DLS +  ++ L  LS  +NL  L L + + L +   SI  LS L TLD+
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL-SNNKLEDLPESIGNLSNLETLDL 262

Query: 70  RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIP---------ESIINLSKLELLHLKNC 120
               N     SSL  L +L+ L LSG S    +P         E ++NL           
Sbjct: 263 S--NNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKL 320

Query: 121 SKLLSLPELPCNLF 134
           + +L    +  N  
Sbjct: 321 NSILLNNNILSNGE 334

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSK 63
           T++  LI     NLKE+DLS ++       L    NL+NL L          S +  L  
Sbjct: 129 TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-----SDLPKLLS 183

Query: 64  LVTLDMRLCK---NLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120
            ++    L      ++ LP  +  L +L+ L LS  +++  +  S+ NL  L  L L N 
Sbjct: 184 NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSN- 241

Query: 121 SKLLSLPELPCNLFSV 136
           +KL  LPE   NL ++
Sbjct: 242 NKLEDLPESIGNLSNL 257

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 64  LVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLS---KLELLHLKNC 120
           LV L M+  K L +L   +  L  L+ + L G  NL+ IP    +LS    LE L L +C
Sbjct: 613 LVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDC 667

Query: 121 SKLLSLP---ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL 173
           S L+ LP   +    L  + + RC +LE L +   L S          NLS C +L
Sbjct: 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR------LNLSGCSRL 717

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.98
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.43
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.26
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.24
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.24
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.24
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.18
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.18
PLN03150	623	hypothetical protein; Provisional	99.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.08
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.03
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.02
PLN03150	623	hypothetical protein; Provisional	98.99
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.85
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.83
PRK15386	426	type III secretion protein GogB; Provisional	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.74
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.51
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.5
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.37
PRK15386	426	type III secretion protein GogB; Provisional	98.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.99
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.96
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.84
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.5
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.9
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.27
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.09
KOG4341	483	consensus F-box protein containing LRR [General fu	90.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.92
KOG4341	483	consensus F-box protein containing LRR [General fu	89.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.33
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.78
smart00370	26	LRR Leucine-rich repeats, outliers.	83.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.92

>PLN03210 Resistant to P

Probab=99.98  E-value=3.8e-31  Score=285.40  Aligned_cols=320  Identities=30%  Similarity=0.413  Sum_probs=213.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|+.|+|++|...+.+|+++.+++|+.|+|++|..+..+|.+++.+++|+.|++++|..++.+|..+ ++++|+.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~  708 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR  708 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence            456788888888887777788888888888888888888888888888888888888888877677666654 4444444


Q ss_pred             EEeeC--------------------------------------------------------------------------C
Q 017788           91 LYLSG--------------------------------------------------------------------------C   96 (366)
Q Consensus        91 L~Ls~--------------------------------------------------------------------------n   96 (366)
                      |++++                                                                          |
T Consensus       709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            44444                                                                          4


Q ss_pred             CCCCcchHHHhccCCCcEEcccccccccccCCC--CCCccEEecCCCcC----------CccccCcccccccCCCCCCce
Q 017788           97 SNLRRIPESIINLSKLELLHLKNCSKLLSLPEL--PCNLFSVGVRRCTS----------LEALSSFSFLFSAMSPHNDQY  164 (366)
Q Consensus        97 ~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l--~~~L~~L~l~~~~~----------L~~L~l~~n~l~~~~~~~~~~  164 (366)
                      .....+|.+++++++|+.|++++|..++.+|..  +.+|+.|++++|..          |+.|+++.|.+.. +|..+..
T Consensus       789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~-iP~si~~  867 (1153)
T PLN03210        789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE-VPWWIEK  867 (1153)
T ss_pred             CCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc-ChHHHhc
Confidence            344456777888888999999988888888864  46788888888744          5567778887776 6777777


Q ss_pred             EEeCCcccCCh-hhhhcchHHHHHHHHhhhh-----------hhhhh--------------------------hhcc--c
Q 017788          165 FNLSDCLKLDQ-NELKGIAEDALQKIQQKAT-----------SWWMK--------------------------LKEE--T  204 (366)
Q Consensus       165 l~~l~~l~L~~-n~l~~~~~~~~~~l~~L~~-----------~~~~~--------------------------~~~~--~  204 (366)
                      +..|..+++++ +.+.. +|..+.+++.|..           ..|..                          ++..  .
T Consensus       868 l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~  946 (1153)
T PLN03210        868 FSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE  946 (1153)
T ss_pred             CCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence            77777777776 33333 2222222222211           11100                          0000  0


Q ss_pred             C-ccCCCCceeEecCCCCCCCceeeccCCceEE-EecCCCCccCCccceeEEEEEeee----------eEEEeeccceee
Q 017788          205 D-YKYKPSCGGIYFPGSEIPKWFRFSSMGSSIE-FKPQSDWINNEYLGIAFCAVLRCR----------IRFKIPSHDWYV  272 (366)
Q Consensus       205 ~-l~~~~~~~~~~~pg~~iP~W~~~~~~g~~v~-i~lp~~w~~~~~~gf~~c~v~~~~----------~~~~~~~~~~~~  272 (366)
                      . +........+.+||.++|+||.|++.|++++ |.+|+.|....|.||++|+|++|.          +.+.|....-+.
T Consensus       947 a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~ 1026 (1153)
T PLN03210        947 ALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLG 1026 (1153)
T ss_pred             hhhcccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCC
Confidence            0 0011113457889999999999999999998 999999998899999999999754          223333211111


Q ss_pred             cccCccCCceEEEEEeee----------c---CCCCCCCCCceeEEEEEEEecCCCCccCcceEEEeeeEEEeecCCC
Q 017788          273 RTIDYVESDHLFMGYYFF----------H---GDKGDSRQDFEKALFKIYFYNHTGRAMRCCGVKKCGIRLLTAGDDF  337 (366)
Q Consensus       273 ~~~~~~~sdh~~~~~~~~----------~---~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~~vk~CGv~liy~~~~~  337 (366)
                      ........+|+|+.|...          .   +.....++.+++++++|.+.+..    ..++||+||||++|+.+..
T Consensus      1027 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210       1027 NHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKN----SQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred             CccccCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCC----CCeEEEeeeEEEeccCCCc
Confidence            111234566777666542          0   00112356788999999877642    2479999999999976543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=7.8e-20  Score=196.09  Aligned_cols=180  Identities=22%  Similarity=0.209  Sum_probs=92.0

Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      ++++|++|+|++|.+.+.+|. +.+++|++|+|++|...+.+|..++.+++|++|+|++|.+.+.+|..++++++|++|+
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  194 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT  194 (968)
T ss_pred             cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence            445555555555555444442 2344555555555544444555555555555555555554445555555555555555


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC---CCccEE-------------ecCCCcCCccccCccccccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP---CNLFSV-------------GVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L-------------~l~~~~~L~~L~l~~n~l~~  156 (366)
                      +++|.+.+.+|..++++++|++|++++|.+.+.+|...   .+|+.|             .+.++++|+.|+++.|.+.+
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            55555544555555555555555555554444444311   112222             23344555556666555555


Q ss_pred             CCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          157 MSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       157 ~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      ..|..+..+..++.+++++|.+.+.+|..+.++++|+
T Consensus       275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  311 (968)
T PLN00113        275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE  311 (968)
T ss_pred             cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence            5555555555555566665555555555555544443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=1.2e-19  Score=194.53  Aligned_cols=193  Identities=22%  Similarity=0.219  Sum_probs=156.4

Q ss_pred             CCCccceeccC-----------CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEec
Q 017788            2 ERTNLRFLILK-----------NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM   69 (366)
Q Consensus         2 ~~~~L~~l~l~-----------~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L   69 (366)
                      .+++|+.|+++           .+++|++|+|++|.+.+.+|. ++++++|++|+|++|...+.+|..++++++|++|+|
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence            35667777642           577888999998888777886 888888999999888877788888888888888888


Q ss_pred             ccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC---CCccEEecC-------
Q 017788           70 RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP---CNLFSVGVR-------  139 (366)
Q Consensus        70 ~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L~l~-------  139 (366)
                      ++|.+.+.+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|...+.+|...   .+|+.|.+.       
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            8888888888888888888888888888888888888888888888888887766666433   455665543       


Q ss_pred             ------CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhh
Q 017788          140 ------RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKAT  194 (366)
Q Consensus       140 ------~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~  194 (366)
                            ++++|+.|+++.|.+.+.+|..+..+..++.++++.|.+.+..|..+..+++|+.
T Consensus       276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  336 (968)
T PLN00113        276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV  336 (968)
T ss_pred             CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence                  3567888999999988888888888889999999999998888888887777764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.67  E-value=2.8e-18  Score=164.07  Aligned_cols=183  Identities=20%  Similarity=0.132  Sum_probs=115.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      |++|++|+.|.|..|.+...-.+ |..+.++++|+|+.|+....-..++.+|++|+.|+|++|.+...-++++...++|+
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~  320 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK  320 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence            55666666666666655333222 55666666666666544443344555566666666666655555555555556666


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCC----CCCCccEEe----------------cCCCcCCccccC
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE----LPCNLFSVG----------------VRRCTSLEALSS  149 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~----l~~~L~~L~----------------l~~~~~L~~L~l  149 (366)
                      .|+|+.|.+...-+.++..|..|++|.|++|. ++.+.+    ..++|++|+                +.++++|+.|.+
T Consensus       321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             eEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence            66666655554444445555555555555442 222221    112333332                456889999999


Q ss_pred             cccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhhh
Q 017788          150 FSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATS  195 (366)
Q Consensus       150 ~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~~  195 (366)
                      .+|++..+....|.++..|+.|+|.+|.+..+.+++|..+ .|..+
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L  444 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL  444 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence            9999999888899999999999999999999999999877 55543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.4e-18  Score=142.91  Aligned_cols=169  Identities=24%  Similarity=0.288  Sum_probs=146.2

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +-++.+++.|.||+|+++...|.+..+.+|+.|++.+| .+.++|.++..+++|+.|+++-|+ +..+|..|+.++.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhh
Confidence            44677888999999999777778999999999999987 567899999999999999999888 7889999999999999


Q ss_pred             EEeeCCCCCC-cchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           91 LYLSGCSNLR-RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        91 L~Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      |||..|.+.. .+|..|..|+.|+.|++++|. .+.+|.        +++.+++|+.|.+..|.+-. +|..++.+..++
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~--------dvg~lt~lqil~lrdndll~-lpkeig~lt~lr  176 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPP--------DVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLR  176 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCC-cccCCh--------hhhhhcceeEEeeccCchhh-CcHHHHHHHHHH
Confidence            9999987654 589999999999999999984 578888        88999999999999998877 888999999999


Q ss_pred             cccCChhhhhcchHHHHHHHHhh
Q 017788          170 CLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       170 ~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      .+.+.+|+++ .+|..++++..+
T Consensus       177 elhiqgnrl~-vlppel~~l~l~  198 (264)
T KOG0617|consen  177 ELHIQGNRLT-VLPPELANLDLV  198 (264)
T ss_pred             HHhcccceee-ecChhhhhhhhh
Confidence            9999999987 445555555433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=3.9e-16  Score=150.55  Aligned_cols=178  Identities=22%  Similarity=0.288  Sum_probs=108.8

Q ss_pred             cCCCCCCCEEeccCCCCC--CCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcC-CCCC
Q 017788           11 LKNLVNLKEIDLSYSRQL--KKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLC-ELIS   87 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~--~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~-~l~~   87 (366)
                      ++.|+.||.+++..|++.  |..+++..+..|..|+|++| .+.++|..+..-+++-.|+|++|+ +..+|..++ +|+-
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtD  151 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTD  151 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHh
Confidence            566777777777777653  22334777777788888777 456777777777777777777776 556666543 7777


Q ss_pred             CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccc----cccCCCCCCccEEe--------------cCCCc-------
Q 017788           88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL----LSLPELPCNLFSVG--------------VRRCT-------  142 (366)
Q Consensus        88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l----~~lp~l~~~L~~L~--------------l~~~~-------  142 (366)
                      |-.||||+|. +..+|+.+..|..|++|+|++|++.    ..+|.. .+|+.|.              +.++.       
T Consensus       152 LLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  152 LLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             Hhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc-hhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            7777777764 5567777777777777777777542    233321 1222221              12233       


Q ss_pred             ----------------CCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhh
Q 017788          143 ----------------SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKAT  194 (366)
Q Consensus       143 ----------------~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~  194 (366)
                                      +|+.|+++.|.++. +.-..+....++.|+|+.|+++ .+|.++.+++.|+.
T Consensus       230 S~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  230 SENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK  295 (1255)
T ss_pred             cccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence                            44444444444443 2222233345555666666665 56888888888873

>PLN03210 Resistant to P

Probab=99.54  E-value=1.3e-14  Score=157.59  Aligned_cols=122  Identities=32%  Similarity=0.465  Sum_probs=82.8

Q ss_pred             CCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      ..+|++|+|++|++. .++ .+..+++|+.|+|++|..++.+| .+..+++|++|+|++|..+..+|..++.+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            356777777777653 344 36677777777777766666666 366677777777777776777777777777777777


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEec
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGV  138 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l  138 (366)
                      +++|..++.+|..+ ++++|+.|++++|..++.+|..+.+|+.|.+
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L  732 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDL  732 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence            77777676777655 6677777777777666666655555555544

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.52  E-value=1.9e-15  Score=144.80  Aligned_cols=173  Identities=18%  Similarity=0.132  Sum_probs=99.7

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccc-------------------
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKN-------------------   74 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~-------------------   74 (366)
                      .++++|+|++|+++..-.+ |.++.+|.+|.|+.|++....+.+|.+|++|+.|+|..|.+                   
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            3455555555555332222 55555555555555544333333444455555555554442                   


Q ss_pred             -----cCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccC
Q 017788           75 -----LNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSS  149 (366)
Q Consensus        75 -----~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l  149 (366)
                           ..--...|..+.++++|+|+.|++...--.++.+|++|+.|+++.|.+...-+.        ....|++|+.|++
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d--------~WsftqkL~~LdL  324 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID--------SWSFTQKLKELDL  324 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc--------hhhhcccceeEec
Confidence                 221122344555666666666655444445566667777777777655444443        4556777777777


Q ss_pred             cccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhhh
Q 017788          150 FSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKATS  195 (366)
Q Consensus       150 ~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~~  195 (366)
                      ++|+++...+..+..|..|+.|+|+.|.++.+...+|..+++|..+
T Consensus       325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            7777777667777777777777777777777666666666666543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.43  E-value=8.1e-15  Score=120.77  Aligned_cols=153  Identities=24%  Similarity=0.257  Sum_probs=134.3

Q ss_pred             CCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhc
Q 017788           29 KKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIIN  108 (366)
Q Consensus        29 ~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~  108 (366)
                      .++|.+..+.++..|.|++| .+..+|+.|+.+.+|+.|++.+|+ ++.+|.+++.+++|+.|+++-|. +..+|.+|+.
T Consensus        24 ~~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs  100 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGS  100 (264)
T ss_pred             hhcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence            45677778899999999998 556789999999999999999888 88999999999999999999875 5589999999


Q ss_pred             cCCCcEEccccccccc-ccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHH
Q 017788          109 LSKLELLHLKNCSKLL-SLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQ  187 (366)
Q Consensus       109 L~~L~~L~L~~n~~l~-~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~  187 (366)
                      ++.|+.||+..|+..+ .+|.        ++..++.|+.|.++.|.+.- +|...+.++.++.+.+.+|.+- ..|..++
T Consensus       101 ~p~levldltynnl~e~~lpg--------nff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig  170 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPG--------NFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIG  170 (264)
T ss_pred             CchhhhhhccccccccccCCc--------chhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence            9999999999986643 5777        78888999999999999987 8888999999999999999887 5678888


Q ss_pred             HHHhhhh
Q 017788          188 KIQQKAT  194 (366)
Q Consensus       188 ~l~~L~~  194 (366)
                      .+.+|+.
T Consensus       171 ~lt~lre  177 (264)
T KOG0617|consen  171 DLTRLRE  177 (264)
T ss_pred             HHHHHHH
Confidence            8888863

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.42  E-value=5.6e-15  Score=142.66  Aligned_cols=153  Identities=30%  Similarity=0.429  Sum_probs=115.6

Q ss_pred             CCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ..+.+|+.+|||.|.+ ..+|+ +.++++|+.|+|++|. ++++.-.++...+|++|+|+.|+ +..+|+.+++|+.|+.
T Consensus       219 d~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTK  295 (1255)
T ss_pred             hhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHH
Confidence            3566777777777766 45565 7777778888888774 34555556666777788888777 6778888888888888


Q ss_pred             EEeeCCCCC-CcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           91 LYLSGCSNL-RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        91 L~Ls~n~~~-~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      |.+.+|.+. .-+|++|++|.+|+.+..++| .+.-.|+        .+..|..|+.|.++.|++-. +|..+.-|.-++
T Consensus       296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPE--------glcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~  365 (1255)
T KOG0444|consen  296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE--------GLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLK  365 (1255)
T ss_pred             HHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCch--------hhhhhHHHHHhcccccceee-chhhhhhcCCcc
Confidence            888777553 347888888888888888776 5677777        78888999999999998877 788777778888


Q ss_pred             cccCChhh
Q 017788          170 CLKLDQNE  177 (366)
Q Consensus       170 ~l~L~~n~  177 (366)
                      .|+|..|+
T Consensus       366 vLDlreNp  373 (1255)
T KOG0444|consen  366 VLDLRENP  373 (1255)
T ss_pred             eeeccCCc
Confidence            88887764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.26  E-value=7e-14  Score=128.94  Aligned_cols=159  Identities=23%  Similarity=0.248  Sum_probs=117.5

Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .+.+|..|++.+|++....|+.-.++.|+.|+...| .++.+|+.++.+.+|..|+|..|+ +..+| .|.++..|.+|+
T Consensus       158 ~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh  234 (565)
T KOG0472|consen  158 NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELH  234 (565)
T ss_pred             HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHH
Confidence            444555566666665444444333666666666665 566677777777777777777777 56666 677777777777


Q ss_pred             eeCCCCCCcchHHHh-ccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcc
Q 017788           93 LSGCSNLRRIPESII-NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCL  171 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~-~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l  171 (366)
                      ++.|. ...+|+.+. +|.+|..||+++| .+++.|.        .+.-+++|+.|++++|.+++ +|..++++ .++.+
T Consensus       235 ~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pd--------e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  235 VGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD--------EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFL  302 (565)
T ss_pred             hcccH-HHhhHHHHhcccccceeeecccc-ccccCch--------HHHHhhhhhhhcccCCcccc-CCcccccc-eeeeh
Confidence            77664 446777766 8999999999998 5688887        66677899999999999999 88899999 89999


Q ss_pred             cCChhhhhcchHHHH
Q 017788          172 KLDQNELKGIAEDAL  186 (366)
Q Consensus       172 ~L~~n~l~~~~~~~~  186 (366)
                      .+.+|++..+-.+.+
T Consensus       303 ~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  303 ALEGNPLRTIRREII  317 (565)
T ss_pred             hhcCCchHHHHHHHH
Confidence            999999987655444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.24  E-value=1.3e-13  Score=126.91  Aligned_cols=56  Identities=14%  Similarity=0.075  Sum_probs=40.7

Q ss_pred             CCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhhh
Q 017788          139 RRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKAT  194 (366)
Q Consensus       139 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~~  194 (366)
                      .++++|+.|++++|+++.+-+.+|..+..++.+.|..|++..+...+|..+..|..
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t  326 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT  326 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence            34567777888888877777777777777777777777777777777766666653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.24  E-value=2.4e-11  Score=124.66  Aligned_cols=79  Identities=25%  Similarity=0.282  Sum_probs=52.9

Q ss_pred             CCcEEcccccccccccCCCCCCccEEecCCC---------cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcc
Q 017788          111 KLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI  181 (366)
Q Consensus       111 ~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~---------~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~  181 (366)
                      +|+.|++++|. +..+|..+++|+.|++++.         .+|+.|+++.|.++. +|..+..+..+..++|++|++++.
T Consensus       383 ~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        383 GLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             ccceEEecCCc-ccCCCCcccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCch
Confidence            56666666664 3456666666666665542         245667777777775 677777788888888888888877


Q ss_pred             hHHHHHHHHh
Q 017788          182 AEDALQKIQQ  191 (366)
Q Consensus       182 ~~~~~~~l~~  191 (366)
                      .+..+..+.+
T Consensus       461 ~~~~L~~l~s  470 (788)
T PRK15387        461 TLQALREITS  470 (788)
T ss_pred             HHHHHHHHhc
Confidence            7776644433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.24  E-value=5.5e-14  Score=129.60  Aligned_cols=173  Identities=24%  Similarity=0.290  Sum_probs=115.1

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +..+.+|+.|+.++|.+....++++.+..|+.|+..+| .+..+|+.++++.+|..|++.+|+ +..+|+..-+++.|++
T Consensus       110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~  187 (565)
T KOG0472|consen  110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKH  187 (565)
T ss_pred             HhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHh
Confidence            34566677777777776544445777777777777666 445667777777888888888777 4444444445888888


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCC--CccEEec-------------CCCcCCccccCcccccc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPC--NLFSVGV-------------RRCTSLEALSSFSFLFS  155 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~--~L~~L~l-------------~~~~~L~~L~l~~n~l~  155 (366)
                      ||...| .++.+|+.++.|.+|..|++.+| .+..+|++++  .|+++.+             .++.++..|++..|++.
T Consensus       188 ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  188 LDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             cccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence            888776 56788888888999999999888 4577786552  2222222             23455666667777766


Q ss_pred             cCCCCCCceEEeCCcccCChhhhhcchHHHHHHH
Q 017788          156 AMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKI  189 (366)
Q Consensus       156 ~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l  189 (366)
                      . .|..+.-+..++.+|+++|.+++ .|..++++
T Consensus       266 e-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl  297 (565)
T KOG0472|consen  266 E-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL  297 (565)
T ss_pred             c-CchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence            6 66666666667777777776664 34445544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.18  E-value=7.5e-11  Score=121.09  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=14.3

Q ss_pred             CCCEEeccCCCCCCCCCCCCCCCCCcEEecccC
Q 017788           16 NLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC   48 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n   48 (366)
                      +|+.|++++|++. .+|.+  +++|++|++++|
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N  252 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL--PPELRTLEVSGN  252 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC--CCCCcEEEecCC
Confidence            4555555555442 34432  345555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.18  E-value=5.3e-11  Score=122.60  Aligned_cols=119  Identities=24%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             CCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCC-CCCCccEEecCCC
Q 017788           63 KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVRRC  141 (366)
Q Consensus        63 ~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~-l~~~L~~L~l~~~  141 (366)
                      +|+.|++++|+ +..+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|.+ ..+|. .+.+|+.|.+.++
T Consensus       263 ~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        263 ALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSL-TALPETLPPGLKTLEAGEN  335 (754)
T ss_pred             CCCEEECcCCc-cCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcc-ccCCccccccceeccccCC
Confidence            45555555444 233444332  34555555555333 3333221  2445555555432 23332 3345555555443


Q ss_pred             ----------cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHh
Q 017788          142 ----------TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ  191 (366)
Q Consensus       142 ----------~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~  191 (366)
                                ++|+.|+++.|.++. +|..+  ...|..|++++|.++.+.+.....++.
T Consensus       336 ~Lt~LP~~l~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~~l~~sL~~  392 (754)
T PRK15370        336 ALTSLPASLPPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPENLPAALQI  392 (754)
T ss_pred             ccccCChhhcCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCHhHHHHHHH
Confidence                      367777777777665 44433  245677778878777655444333333

>PLN03150 hypothetical protein; Provisional

Probab=99.14  E-value=9.8e-11  Score=119.47  Aligned_cols=89  Identities=27%  Similarity=0.241  Sum_probs=64.9

Q ss_pred             CcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788           40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN  119 (366)
Q Consensus        40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~  119 (366)
                      ++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|+.+++|++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677777766667777777777777777777776667777777777777777777777777777777777777777777


Q ss_pred             cccccccCC
Q 017788          120 CSKLLSLPE  128 (366)
Q Consensus       120 n~~l~~lp~  128 (366)
                      |.+.+.+|.
T Consensus       500 N~l~g~iP~  508 (623)
T PLN03150        500 NSLSGRVPA  508 (623)
T ss_pred             CcccccCCh
Confidence            776666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.08  E-value=1.5e-10  Score=119.25  Aligned_cols=150  Identities=19%  Similarity=0.301  Sum_probs=96.3

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      ++|+.|+|++|++. .+|. +.  ++|++|++++|. +..+|..+.  .+|+.|+|++|. +..+|..+.  .+|+.|++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEEC
Confidence            36888888888775 5554 43  478888888875 446666543  478888888887 457777653  57888888


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCC-CCCCccEEecCC----------CcCCccccCcccccccCCCCCC
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVRR----------CTSLEALSSFSFLFSAMSPHND  162 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~-l~~~L~~L~l~~----------~~~L~~L~l~~n~l~~~~~~~~  162 (366)
                      ++|.+. .+|..+.  .+|+.|++++|++ ..+|. ++.+|+.|++.+          .++|+.|.++.|.++. +|..+
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l  344 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSI-RTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL  344 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCcc-ccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh
Confidence            887655 5776554  4788888888854 45554 333444444332          2356666666666655 44333


Q ss_pred             ceEEeCCcccCChhhhhc
Q 017788          163 QYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       163 ~~l~~l~~l~L~~n~l~~  180 (366)
                      .  ..|+.|++++|.++.
T Consensus       345 ~--~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        345 P--PELQVLDVSKNQITV  360 (754)
T ss_pred             c--CcccEEECCCCCCCc
Confidence            2  456666666666653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.03  E-value=2.1e-11  Score=112.57  Aligned_cols=172  Identities=18%  Similarity=0.164  Sum_probs=116.6

Q ss_pred             CCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch-hcCCCCCCcEEEe
Q 017788           16 NLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS-SLCELISLQRLYL   93 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~l~~L~~L~L   93 (366)
                      .-..++|..|.+....|. |+.+++||+|+|+.|.+...-|.+|.++..|..|-+.+|+.++.+|. .|++|.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456788888888433333 88888888899888877777788888888888887777444667765 5668888888888


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccc--------------------
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL--------------------  153 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~--------------------  153 (366)
                      .-|.+.....+.+..|++|..|.+.+|. .+.++.-       .+.++.+++++.+..|.                    
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~-------tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie  219 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKG-------TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE  219 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccc-------cccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence            7777766677777888888888877763 3444431       11111222222211111                    


Q ss_pred             -----------------------------------------cccC-CCCCCceEEeCCcccCChhhhhcchHHHHHHHHh
Q 017788          154 -----------------------------------------FSAM-SPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ  191 (366)
Q Consensus       154 -----------------------------------------l~~~-~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~  191 (366)
                                                               .... +...|..|..|+.++|++|.++++.+.+|.....
T Consensus       220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~  299 (498)
T KOG4237|consen  220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE  299 (498)
T ss_pred             cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence                                                     0011 1123667888999999999999999999888877


Q ss_pred             hhhh
Q 017788          192 KATS  195 (366)
Q Consensus       192 L~~~  195 (366)
                      ++..
T Consensus       300 l~eL  303 (498)
T KOG4237|consen  300 LQEL  303 (498)
T ss_pred             hhhh
Confidence            7644

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.02  E-value=7.1e-11  Score=110.66  Aligned_cols=110  Identities=21%  Similarity=0.123  Sum_probs=56.5

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCC---CCCcEEecccCCCcc----ccCccccCC-cCCcEEecccccccC----ccc
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQA---RNLENLLLKACSSLV----ETHSSIQYL-SKLVTLDMRLCKNLN----RLP   79 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l---~~L~~L~L~~n~~~~----~~p~~i~~L-~~L~~L~L~~n~~~~----~lp   79 (366)
                      ++++|+.|++++|.+.+..+. +..+   ++|+.|++++|....    .+...+..+ ++|+.|++++|.+.+    .++
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            455666666666665433332 3222   336666666664431    122334444 566666666666442    233


Q ss_pred             hhcCCCCCCcEEEeeCCCCCC----cchHHHhccCCCcEEccccccc
Q 017788           80 SSLCELISLQRLYLSGCSNLR----RIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        80 ~~i~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      ..+..+++|++|++++|.+.+    .++..+..+++|+.|++++|.+
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            344455566666666665442    1233344455666666666643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=7.4e-10  Score=113.09  Aligned_cols=106  Identities=25%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             CcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcC
Q 017788           64 LVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTS  143 (366)
Q Consensus        64 L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~  143 (366)
                      ++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|.        .+.++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--------~l~~L~~  491 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--------SLGQLTS  491 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--------HHhcCCC
Confidence            45555555555555555555555555555555555555555555555555555555555555555        4455555


Q ss_pred             CccccCcccccccCCCCCCceE-EeCCcccCChhh
Q 017788          144 LEALSSFSFLFSAMSPHNDQYF-NLSDCLKLDQNE  177 (366)
Q Consensus       144 L~~L~l~~n~l~~~~~~~~~~l-~~l~~l~L~~n~  177 (366)
                      |+.|+++.|.+++.+|..+..+ ..+..+++.+|.
T Consensus       492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            5555555555555555544332 223334444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=3.2e-11  Score=121.64  Aligned_cols=86  Identities=28%  Similarity=0.302  Sum_probs=42.4

Q ss_pred             cCCCCCCcEEEeeCCCCCCcchH-HHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC
Q 017788           82 LCELISLQRLYLSGCSNLRRIPE-SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH  160 (366)
Q Consensus        82 i~~l~~L~~L~Ls~n~~~~~lp~-~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~  160 (366)
                      +.++++|++|+|++|.+ ..+|+ .+.++..|++|+|++| .++.+|.        .+..|..|++|...+|++.. .| 
T Consensus       379 l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGN-kL~~Lp~--------tva~~~~L~tL~ahsN~l~~-fP-  446 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGN-KLTTLPD--------TVANLGRLHTLRAHSNQLLS-FP-  446 (1081)
T ss_pred             hccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccc-hhhhhhH--------HHHhhhhhHHHhhcCCceee-ch-
Confidence            34555566666666542 23443 3455556666666665 3455554        33344444444444444443 33 


Q ss_pred             CCceEEeCCcccCChhhhh
Q 017788          161 NDQYFNLSDCLKLDQNELK  179 (366)
Q Consensus       161 ~~~~l~~l~~l~L~~n~l~  179 (366)
                      .+..+..++++|++.|.++
T Consensus       447 e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hhhhcCcceEEecccchhh
Confidence            3444444455555544443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.93  E-value=9.8e-11  Score=109.73  Aligned_cols=39  Identities=18%  Similarity=0.130  Sum_probs=19.0

Q ss_pred             cCCccccCcccccccC----CCCCCceEEeCCcccCChhhhhc
Q 017788          142 TSLEALSSFSFLFSAM----SPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       142 ~~L~~L~l~~n~l~~~----~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      ++|+.|+++.|.+...    +...+..+..++.+++++|.+.+
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            3555555555544321    11223344556666666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.90  E-value=5.3e-10  Score=95.06  Aligned_cols=106  Identities=27%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             CCCCCCEEeccCCCCCCCCCCCC-CCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhc-CCCCCCcE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPDLS-QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSL-CELISLQR   90 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~l~-~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i-~~l~~L~~   90 (366)
                      +...+++|+|++|.+ ..+..++ .+.+|+.|+|++|.+ ..++ .+..+++|++|++++|.+ ..+++.+ ..+++|++
T Consensus        17 n~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N~I-~~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNNQI-TKLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-ccccchhhhhcCCCEEECCCCCC-cccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCE
Confidence            444556666666655 2334444 355566666665533 2332 344555566666665552 3333322 23555666


Q ss_pred             EEeeCCCCCCc-chHHHhccCCCcEEccccccc
Q 017788           91 LYLSGCSNLRR-IPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        91 L~Ls~n~~~~~-lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      |++++|.+... --..+..+++|+.|++.+|+.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            66655543221 012344555555555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.87  E-value=3.6e-11  Score=115.64  Aligned_cols=162  Identities=27%  Similarity=0.317  Sum_probs=103.7

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      .--...||+.|++ ..+|. +..+-.|+.|.|..| .+..+|..++++..|.+|||+.|+ +..+|..++.|+ |+.|.+
T Consensus        75 tdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRF-SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhcccccc-ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence            3345567788877 45564 777777777777776 445677788888888888888877 667777776665 777777


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL  173 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L  173 (366)
                      ++| .++.+|+.|+.+..|..||.+.|. +..+|.        .+.++.+|+.|.+..|++.. +|..+..|.. ..||+
T Consensus       151 sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slps--------ql~~l~slr~l~vrRn~l~~-lp~El~~LpL-i~lDf  218 (722)
T KOG0532|consen  151 SNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPS--------QLGYLTSLRDLNVRRNHLED-LPEELCSLPL-IRLDF  218 (722)
T ss_pred             ecC-ccccCCcccccchhHHHhhhhhhh-hhhchH--------HhhhHHHHHHHHHhhhhhhh-CCHHHhCCce-eeeec
Confidence            766 455777777777777788877774 455555        44555555555555555555 3443333332 23555


Q ss_pred             ChhhhhcchHHHHHHHHhhh
Q 017788          174 DQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       174 ~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +.|++. .+|-.|.+|+.|+
T Consensus       219 ScNkis-~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  219 SCNKIS-YLPVDFRKMRHLQ  237 (722)
T ss_pred             ccCcee-ecchhhhhhhhhe
Confidence            555554 3455555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.85  E-value=2.9e-10  Score=114.84  Aligned_cols=112  Identities=30%  Similarity=0.341  Sum_probs=93.0

Q ss_pred             CCCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      +.-+|+.|||++|.+ +..| .+..+.+|+.|+++.| .+..+|.++.++.+|++|+|.+|. +..+|.++..+++|+.|
T Consensus        43 ~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYL  119 (1081)
T ss_pred             heeeeEEeecccccc-ccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhccccc
Confidence            344589999998887 5666 4888999999999987 677888899999999999999766 88899999999999999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCC
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE  128 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~  128 (366)
                      ++++|. .+.+|..+..++.+..+..++|..++.++.
T Consensus       120 dlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~  155 (1081)
T KOG0618|consen  120 DLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQ  155 (1081)
T ss_pred             ccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence            999985 557888888888888888888855555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.83  E-value=1.1e-10  Score=112.25  Aligned_cols=151  Identities=23%  Similarity=0.256  Sum_probs=103.1

Q ss_pred             CCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      +..|+.+.|..|.+ ..+| .+.++..|.+|+|+.|+ +..+|..+..|+ |+.|-+++|+ ++.+|..++.+..|..||
T Consensus        97 f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen   97 FVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLD  172 (722)
T ss_pred             HHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhh
Confidence            44566667777766 3444 37777777777777763 345666666665 7777777666 677777777777777777


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK  172 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~  172 (366)
                      .+.|. +..+|..++.+.+|+.|.++.|. +..+|+        .+. +-.|..|+++.|++.. +|-.|.++..|+.+.
T Consensus       173 ~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~--------El~-~LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  173 VSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPE--------ELC-SLPLIRLDFSCNKISY-LPVDFRKMRHLQVLQ  240 (722)
T ss_pred             hhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCH--------HHh-CCceeeeecccCceee-cchhhhhhhhheeee
Confidence            77774 34677777777777777777763 445554        333 3346777777777777 777777777777777


Q ss_pred             CChhhhhc
Q 017788          173 LDQNELKG  180 (366)
Q Consensus       173 L~~n~l~~  180 (366)
                      |++|++..
T Consensus       241 LenNPLqS  248 (722)
T KOG0532|consen  241 LENNPLQS  248 (722)
T ss_pred             eccCCCCC
Confidence            77777764

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.82  E-value=1.9e-08  Score=95.76  Aligned_cols=152  Identities=21%  Similarity=0.357  Sum_probs=96.7

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +..+.+++.|++++|.+ ..+|.+  ..+|+.|.+++|..+..+|+.+  ..+|+.|++++|..+..+|..      |+.
T Consensus        48 ~~~~~~l~~L~Is~c~L-~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDI-ESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCC-cccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence            44578999999999965 666743  2469999999998888888755  368999999999667777754      666


Q ss_pred             EEeeCCC--CCCcchHHHhccC------------------CCcEEcccccccccccCCCCCCccEEecCCCcCCccccCc
Q 017788           91 LYLSGCS--NLRRIPESIINLS------------------KLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSF  150 (366)
Q Consensus        91 L~Ls~n~--~~~~lp~~i~~L~------------------~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~  150 (366)
                      |+++++.  ..+.+|.++..|.                  +|++|++++|......+.+|.+|+.|.++.+. ...+.+.
T Consensus       117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~-~~sLeI~  195 (426)
T PRK15386        117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ-KTTWNIS  195 (426)
T ss_pred             EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccc-cccccCc
Confidence            6676543  2556777665442                  56666666665433222355556555554321 1222222


Q ss_pred             ccccccCCCCCCceEEeCCcccCChhhhh
Q 017788          151 SFLFSAMSPHNDQYFNLSDCLKLDQNELK  179 (366)
Q Consensus       151 ~n~l~~~~~~~~~~l~~l~~l~L~~n~l~  179 (366)
                      .    ..+|..+ .+.+.+|+.++.+.++
T Consensus       196 ~----~sLP~nl-~L~f~n~lkL~~~~f~  219 (426)
T PRK15386        196 F----EGFPDGL-DIDLQNSVLLSPDVFK  219 (426)
T ss_pred             c----ccccccc-EechhhhcccCHHHhh
Confidence            1    1255555 6777777777665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.76  E-value=9.8e-09  Score=87.31  Aligned_cols=116  Identities=25%  Similarity=0.245  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCCcEEecccCCCccccCcccc-CCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHH-
Q 017788           29 KKLPDLSQARNLENLLLKACSSLVETHSSIQ-YLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESI-  106 (366)
Q Consensus        29 ~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~-~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i-  106 (366)
                      ...|.+.+...++.|+|++|.+. .+ +.++ .+.+|+.|+|++|. +..++ .+..++.|++|++++|.+. .+++.+ 
T Consensus        10 ~~~~~~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~   84 (175)
T PF14580_consen   10 EQIAQYNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLD   84 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHH
T ss_pred             ccccccccccccccccccccccc-cc-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCC-ccccchH
Confidence            55666777778999999999554 33 3455 58899999999998 55554 5778999999999999766 455555 


Q ss_pred             hccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788          107 INLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus       107 ~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      ..+++|++|++++|++ ..+..+-      .+..|++|+.|++..|.++.
T Consensus        85 ~~lp~L~~L~L~~N~I-~~l~~l~------~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKI-SDLNELE------PLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             HH-TT--EEE-TTS----SCCCCG------GGGG-TT--EEE-TT-GGGG
T ss_pred             HhCCcCCEEECcCCcC-CChHHhH------HHHcCCCcceeeccCCcccc
Confidence            4689999999999854 3333211      45567778888877777653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.74  E-value=3.6e-09  Score=102.45  Aligned_cols=155  Identities=27%  Similarity=0.357  Sum_probs=94.6

Q ss_pred             CCCCCCCEEeccCCCCCCCCCC-CCCCC-CCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPD-LSQAR-NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~-~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ..++.++.|++.+|.+. .+|. ...+. +|+.|++++|. +..+|..++.+++|+.|++++|+ +..+|...+.+++|+
T Consensus       113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~  189 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN  189 (394)
T ss_pred             hcccceeEEecCCcccc-cCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence            34566788888877774 4444 55553 78888888773 45556677788888888888877 666776666778888


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      .|++++|. ...+|..+..+..|+.|.+++|.....+.         .+.++..+..+.+..|++.. .+..++.+..++
T Consensus       190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~---------~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~  258 (394)
T COG4886         190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLS---------SLSNLKNLSGLELSNNKLED-LPESIGNLSNLE  258 (394)
T ss_pred             heeccCCc-cccCchhhhhhhhhhhhhhcCCcceecch---------hhhhcccccccccCCceeee-ccchhccccccc
Confidence            88888874 44677766666778888887774322222         23333444444444444333 233334444444


Q ss_pred             cccCChhhhhc
Q 017788          170 CLKLDQNELKG  180 (366)
Q Consensus       170 ~l~L~~n~l~~  180 (366)
                      .+++++|.++.
T Consensus       259 ~L~~s~n~i~~  269 (394)
T COG4886         259 TLDLSNNQISS  269 (394)
T ss_pred             eeccccccccc
Confidence            44444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.71  E-value=5.4e-09  Score=101.22  Aligned_cols=156  Identities=31%  Similarity=0.313  Sum_probs=129.8

Q ss_pred             CCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788           16 NLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS   94 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls   94 (366)
                      +|+.|+++.|.+ ..+| .+..+++|+.|+++.| .+..+|...+.++.|+.|++++|+ +..+|..+..+..|++|.++
T Consensus       141 nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccch-hhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence            899999999998 5665 5899999999999998 456777777789999999999998 78888887777789999999


Q ss_pred             CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCC
Q 017788           95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLD  174 (366)
Q Consensus        95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~  174 (366)
                      +|. ....+..+.++.++..+.+.+|+. ..++.        .+..+++++.|+++.|.++. ++. ++.+..+..++++
T Consensus       218 ~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~--------~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s  285 (394)
T COG4886         218 NNS-IIELLSSLSNLKNLSGLELSNNKL-EDLPE--------SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLS  285 (394)
T ss_pred             CCc-ceecchhhhhcccccccccCCcee-eeccc--------hhccccccceeccccccccc-ccc-ccccCccCEEecc
Confidence            985 336777889999999999888754 34344        56677889999999999988 443 8889999999999


Q ss_pred             hhhhhcchHHHH
Q 017788          175 QNELKGIAEDAL  186 (366)
Q Consensus       175 ~n~l~~~~~~~~  186 (366)
                      .|.+....+...
T Consensus       286 ~n~~~~~~~~~~  297 (394)
T COG4886         286 GNSLSNALPLIA  297 (394)
T ss_pred             Cccccccchhhh
Confidence            999887766554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.64  E-value=4.6e-09  Score=94.23  Aligned_cols=130  Identities=20%  Similarity=0.133  Sum_probs=63.7

Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788           15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS   94 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls   94 (366)
                      ..|+++|||+|.+...-.+..-+|.++.|+++.|.+.. + .+++.|++|+.|||++|. +..+-.+-.++-+.++|.|+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence            34556666666552222224445566666666654332 2 235555666666666555 33333333355556666666


Q ss_pred             CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      +|.+. .+ +++++|-+|..||+++|++ +.+.+-      -.+++++.|+.+.+.+|.+.+
T Consensus       361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~I-e~ldeV------~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIE-TL-SGLRKLYSLVNLDLSSNQI-EELDEV------NHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHh-hh-hhhHhhhhheeccccccch-hhHHHh------cccccccHHHHHhhcCCCccc
Confidence            55321 22 3455555666666666532 222110      034455555666665555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.61  E-value=3.4e-08  Score=68.99  Aligned_cols=58  Identities=29%  Similarity=0.238  Sum_probs=25.8

Q ss_pred             CCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788           39 NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC   96 (366)
Q Consensus        39 ~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n   96 (366)
                      +|++|++++|.+...-+..+.++++|++|++++|.+...-|..|.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444444444332222234444555555555544433333334445555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=4.4e-08  Score=68.41  Aligned_cols=59  Identities=29%  Similarity=0.301  Sum_probs=40.9

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEeccccc
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK   73 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~   73 (366)
                      ++|++|++++|++....++ |.++++|++|++++|.+....|..+.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4677777777766433333 7777777777777776655555677777777777777775

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.54  E-value=9.7e-09  Score=92.16  Aligned_cols=134  Identities=24%  Similarity=0.232  Sum_probs=90.2

Q ss_pred             CCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEc
Q 017788           37 ARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLH  116 (366)
Q Consensus        37 l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~  116 (366)
                      .+.|+.|+|++| .+..+.+++.-+++++.|+++.|.+.. +. .+..+++|+.||||+|.+. .+-.+=.+|-+.++|.
T Consensus       283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            345677777776 455666777777777777777777433 22 2556777777777776433 3444445667777777


Q ss_pred             ccccccccccCCCCCCccEEecCCCcCCccccCcccccccCC-CCCCceEEeCCcccCChhhhhcchHH
Q 017788          117 LKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMS-PHNDQYFNLSDCLKLDQNELKGIAED  184 (366)
Q Consensus       117 L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~L~~n~l~~~~~~  184 (366)
                      |++| .+..+.         .++.+-+|..|+++.|++.... -..++.++.++.+.|.+|++.++...
T Consensus       359 La~N-~iE~LS---------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  359 LAQN-KIETLS---------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhhh-hHhhhh---------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            7776 334443         3556778889999999876531 23567888888899999998865443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.4e-08  Score=95.35  Aligned_cols=161  Identities=24%  Similarity=0.221  Sum_probs=88.3

Q ss_pred             CCCCCCCEEeccCCCCCCCCC--C-CCCCCCCcEEecccCCCccccCccc-cCCcCCcEEecccccccC-ccchhcCCCC
Q 017788           12 KNLVNLKEIDLSYSRQLKKLP--D-LSQARNLENLLLKACSSLVETHSSI-QYLSKLVTLDMRLCKNLN-RLPSSLCELI   86 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~n~~~~~~p~~i-~~L~~L~~L~L~~n~~~~-~lp~~i~~l~   86 (366)
                      ..|++++.||||.|-+...-|  . ...+++|+.|+|+.|.+.-...+.. ..+++|+.|.|+.|.+.. .+-.....++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            457777777777776543333  2 4567777777777775443222211 245677777777776542 2222333567


Q ss_pred             CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccC-CCCC----
Q 017788           87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM-SPHN----  161 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~-~~~~----  161 (366)
                      +|+.|+|.+|......-....-++.|+.|||++|+++ ..+..+      ..+.++.|+.|+++.+.+..+ .|+.    
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGY------KVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccc------ccccccchhhhhccccCcchhcCCCccchh
Confidence            7777777777433222233344567777777777543 223211      234455566666655554432 1111    


Q ss_pred             -CceEEeCCcccCChhhhh
Q 017788          162 -DQYFNLSDCLKLDQNELK  179 (366)
Q Consensus       162 -~~~l~~l~~l~L~~n~l~  179 (366)
                       ...+..++.|++..|++.
T Consensus       296 kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhcccccceeeecccCccc
Confidence             234556666677766654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.50  E-value=4.8e-08  Score=102.53  Aligned_cols=105  Identities=30%  Similarity=0.319  Sum_probs=62.6

Q ss_pred             CCCCCEEeccCCCC-CCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           14 LVNLKEIDLSYSRQ-LKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        14 l~~L~~L~Ls~n~~-~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      .+.|++|-+..|.. ...++.  |..++.|++|||++|...+.+|++|+.|-+|++|+|+++. +..+|.++.+|+.|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhhe
Confidence            44566666665541 233332  5566666666666666666666666666666666666655 4466666666666666


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKN  119 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~  119 (366)
                      |++..+.....+|..+..|++|++|.+..
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeec
Confidence            66666555555555555566666666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.48  E-value=7.9e-08  Score=100.92  Aligned_cols=131  Identities=29%  Similarity=0.371  Sum_probs=102.1

Q ss_pred             CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCC-ccccC-ccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSS-LVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~-~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      .+....+.+.+-+|.+ ..++.-...+.|++|-+.+|.. +..++ ..|..++.|+.|||++|...+.+|+.|+.|-+|+
T Consensus       520 ~~~~~~rr~s~~~~~~-~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKI-EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             cchhheeEEEEeccch-hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            3445667777777765 4555544556899999999862 34444 3478899999999999999999999999999999


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccc
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF  152 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n  152 (366)
                      +|++++.. ...+|.++++|.+|.+|++..+..+..+|.        .+..+.+|+.|.+...
T Consensus       599 yL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~--------i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  599 YLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPG--------ILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccccCCC-ccccchHHHHHHhhheeccccccccccccc--------hhhhcccccEEEeecc
Confidence            99999975 448999999999999999999877777765        3444666777666443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=8.2e-08  Score=90.20  Aligned_cols=140  Identities=20%  Similarity=0.162  Sum_probs=92.5

Q ss_pred             CCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccc-cCccccCCcCCcEEecccccccCccchhcCCCCCC
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVE-THSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISL   88 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~-~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L   88 (366)
                      ..|++|+.|+|+.|++.--..+  -..+++|+.|.|++|.+... +......+++|+.|+|..|.....--.....+..|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            4799999999999988544332  34678999999999966432 22234567899999999886444333344467889


Q ss_pred             cEEEeeCCCCCCcch--HHHhccCCCcEEcccccccccccCCCCC-CccEEecCCCcCCccccCcccccc
Q 017788           89 QRLYLSGCSNLRRIP--ESIINLSKLELLHLKNCSKLLSLPELPC-NLFSVGVRRCTSLEALSSFSFLFS  155 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp--~~i~~L~~L~~L~L~~n~~l~~lp~l~~-~L~~L~l~~~~~L~~L~l~~n~l~  155 (366)
                      +.|||++|.+. .++  ..++.++.|+.|+++.|.+ .++..... ++.  .....++|+.|.+..|++.
T Consensus       249 ~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi-~si~~~d~~s~~--kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  249 QELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGI-ASIAEPDVESLD--KTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhccccCCccc-ccccccccccccchhhhhccccCc-chhcCCCccchh--hhcccccceeeecccCccc
Confidence            99999998765 344  4567788888888888743 33221110 000  1134567777777777763

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.00  E-value=7.9e-06  Score=78.07  Aligned_cols=107  Identities=25%  Similarity=0.425  Sum_probs=77.2

Q ss_pred             CCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcE
Q 017788           35 SQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL  114 (366)
Q Consensus        35 ~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~  114 (366)
                      ..+.+++.|++++| .+..+|.   -..+|+.|++++|..+..+|..+  ..+|+.|++++|..+..+|.      +|+.
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            35789999999998 6667772   23469999999998888888765  46899999999976667775      4666


Q ss_pred             EcccccccccccCCCCCCccEEecCCC-------------cCCccccCccccc
Q 017788          115 LHLKNCSKLLSLPELPCNLFSVGVRRC-------------TSLEALSSFSFLF  154 (366)
Q Consensus       115 L~L~~n~~l~~lp~l~~~L~~L~l~~~-------------~~L~~L~l~~n~l  154 (366)
                      |++..+ ....++.+|.+|+.|.+.+.             ++|+.|.++.+..
T Consensus       117 L~L~~n-~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~  168 (426)
T PRK15386        117 LEIKGS-ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN  168 (426)
T ss_pred             EEeCCC-CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence            667654 34456777778887776321             3566666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.98  E-value=2.6e-06  Score=83.12  Aligned_cols=163  Identities=23%  Similarity=0.139  Sum_probs=101.9

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +..+++|+.|++..|++ ..+.. +..+++|++|++++|.+.. +. .+..++.|+.|++++|.+ ..+ ..+..+++|+
T Consensus        91 l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLI-SDI-SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccch-hhcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcc-hhc-cCCccchhhh
Confidence            56778888888888887 45555 7888888888888885443 32 466777788888888884 333 2344588888


Q ss_pred             EEEeeCCCCCCcch-HHHhccCCCcEEcccccccccccCCC----------C-CCccEEe-cCCCcC--CccccCccccc
Q 017788           90 RLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPEL----------P-CNLFSVG-VRRCTS--LEALSSFSFLF  154 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~l----------~-~~L~~L~-l~~~~~--L~~L~l~~n~l  154 (366)
                      .+++++|.+...-+ . ...+.+|+.+.+.+|.+...-..-          . ..+..+. +..+..  |+.+.++.|.+
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRI  244 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcc
Confidence            88888886554333 1 467788888888887543221100          0 0000000 111122  66777777776


Q ss_pred             ccCCCCCCceEEeCCcccCChhhhhc
Q 017788          155 SAMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       155 ~~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      .. .+..+..+..+..+++.+|.+..
T Consensus       245 ~~-~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  245 SR-SPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             cc-ccccccccccccccchhhccccc
Confidence            65 32445556666777777776654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.96  E-value=1.8e-06  Score=79.21  Aligned_cols=129  Identities=24%  Similarity=0.287  Sum_probs=87.9

Q ss_pred             cCCCCCCCEEeccCCCCCCCCC----C-CCCCCCCcEEecccCCCccc-------------cCccccCCcCCcEEecccc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLP----D-LSQARNLENLLLKACSSLVE-------------THSSIQYLSKLVTLDMRLC   72 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p----~-l~~l~~L~~L~L~~n~~~~~-------------~p~~i~~L~~L~~L~L~~n   72 (366)
                      +..+++|++||||.|.+...-+    + ++++..|+.|.|.+|.+...             ....++.-++|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            4567799999999998753332    3 57789999999998844321             1123445578999999988


Q ss_pred             cccCc-----cchhcCCCCCCcEEEeeCCCCCCc----chHHHhccCCCcEEccccccccc--------ccCCCCCCccE
Q 017788           73 KNLNR-----LPSSLCELISLQRLYLSGCSNLRR----IPESIINLSKLELLHLKNCSKLL--------SLPELPCNLFS  135 (366)
Q Consensus        73 ~~~~~-----lp~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~L~~n~~l~--------~lp~l~~~L~~  135 (366)
                      + ++.     +...+...+.|+.+.++.|.+...    +-..+..+++|+.|||.+|.+..        .+|.++ +|+.
T Consensus       168 r-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~E  245 (382)
T KOG1909|consen  168 R-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRE  245 (382)
T ss_pred             c-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hhee
Confidence            8 433     334566678899999988865422    33567789999999999986643        333333 5666


Q ss_pred             EecCCC
Q 017788          136 VGVRRC  141 (366)
Q Consensus       136 L~l~~~  141 (366)
                      ++++.|
T Consensus       246 l~l~dc  251 (382)
T KOG1909|consen  246 LNLGDC  251 (382)
T ss_pred             eccccc
Confidence            665554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.93  E-value=1.8e-06  Score=85.97  Aligned_cols=105  Identities=25%  Similarity=0.258  Sum_probs=79.4

Q ss_pred             cCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCC
Q 017788           62 SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC  141 (366)
Q Consensus        62 ~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~  141 (366)
                      .+|.+.+.+.|. +..+..++.-++.|+.|+|++|.+...  +.+..|++|++|||+.| .+..+|.+       ...+|
T Consensus       164 n~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l-------~~~gc  232 (1096)
T KOG1859|consen  164 NKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQL-------SMVGC  232 (1096)
T ss_pred             hhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhcccccc-------chhhh
Confidence            356666777666 666677777789999999999976543  37889999999999998 56777763       55677


Q ss_pred             cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788          142 TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       142 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      + |+.|.+++|.++..  ..+.+|..|..||+++|-+.+
T Consensus       233 ~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             h-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhc
Confidence            6 88888888877652  335577888888888888776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=1.7e-06  Score=69.35  Aligned_cols=106  Identities=21%  Similarity=0.261  Sum_probs=81.7

Q ss_pred             CCEEeccCCCCCCCCCC----CCCCCCCcEEecccCCCccccCcccc-CCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           17 LKEIDLSYSRQLKKLPD----LSQARNLENLLLKACSSLVETHSSIQ-YLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        17 L~~L~Ls~n~~~~~~p~----l~~l~~L~~L~L~~n~~~~~~p~~i~-~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      +..+||+.|.+ ..+++    +.+...|...+|++|. ...+|+.+. ..+.+++|||++|+ +..+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchh-hHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence            45678888876 44543    5677788888999984 456676665 44589999999888 77889999999999999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccC
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP  127 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp  127 (366)
                      +++.|++. ..|..|..|.+|..|+..+|.+ ..+|
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~-~eid  139 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENAR-AEID  139 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCcc-ccCc
Confidence            99998654 6888888899999999888743 3444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.74  E-value=5.4e-07  Score=89.63  Aligned_cols=81  Identities=27%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCCCCcEEEeeCCCCCCcchHHHhccCCC
Q 017788           34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELISLQRLYLSGCSNLRRIPESIINLSKL  112 (366)
Q Consensus        34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L  112 (366)
                      +.-++.|+.|+|++|+.. .+. .+..|++|++|||+.|. +..+|.- ...+. |+.|.+++|... .+ .+|.+|.+|
T Consensus       183 Lqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL  256 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSL  256 (1096)
T ss_pred             HHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHH-hh-hhHHhhhhh
Confidence            444455555555555332 222 44555555555555555 3333321 11222 555555554322 12 234555555


Q ss_pred             cEEccccc
Q 017788          113 ELLHLKNC  120 (366)
Q Consensus       113 ~~L~L~~n  120 (366)
                      +.||++.|
T Consensus       257 ~~LDlsyN  264 (1096)
T KOG1859|consen  257 YGLDLSYN  264 (1096)
T ss_pred             hccchhHh
Confidence            55555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=5.5e-05  Score=48.85  Aligned_cols=33  Identities=33%  Similarity=0.468  Sum_probs=13.9

Q ss_pred             CCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788           63 KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC   96 (366)
Q Consensus        63 ~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n   96 (366)
                      +|++|++++|+ +..+|..+++|++|++|++++|
T Consensus         2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCC-CcccCchHhCCCCCCEEEecCC
Confidence            34444444444 2234444444444444444444

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.68  E-value=4.9e-06  Score=81.22  Aligned_cols=129  Identities=27%  Similarity=0.259  Sum_probs=76.0

Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .+..++.+++..|.+......+..+++|+.|++.+|.+ ..+...+..+++|++|++++|.+...-  .+..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            35566666677776643233477777788888877744 344333667777888888877743322  344666677777


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEe-cCCCcCCccccCcccccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVG-VRRCTSLEALSSFSFLFS  155 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~-l~~~~~L~~L~l~~n~l~  155 (366)
                      +++|.+.. + ..+..+.+|+.+++++|.+. .+..        . +..+.+++.+.+..|.+.
T Consensus       147 l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~-~ie~--------~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLISD-I-SGLESLKSLKLLDLSYNRIV-DIEN--------DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcchh-c-cCCccchhhhcccCCcchhh-hhhh--------hhhhhccchHHHhccCCchh
Confidence            77775542 2 23444677777777777443 3322        1 234455555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.67  E-value=5.4e-05  Score=48.88  Aligned_cols=34  Identities=26%  Similarity=0.280  Sum_probs=15.7

Q ss_pred             CCcEEecccCCCccccCccccCCcCCcEEeccccc
Q 017788           39 NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK   73 (366)
Q Consensus        39 ~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~   73 (366)
                      +|++|++++|.+ ..+|+.+++|++|++|++++|+
T Consensus         2 ~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCC-cccCchHhCCCCCCEEEecCCC
Confidence            445555555422 2344445555555555555554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=1.7e-05  Score=71.52  Aligned_cols=155  Identities=19%  Similarity=0.177  Sum_probs=91.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC--ccccCCcCCcEEecccccccCccchh-cC-CC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH--SSIQYLSKLVTLDMRLCKNLNRLPSS-LC-EL   85 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p--~~i~~L~~L~~L~L~~n~~~~~lp~~-i~-~l   85 (366)
                      ++.+.+|+.|.|.++++...+-. +.+-.+|+.|+|++|...++..  --+.+++.|..|||+.|......-.. +. --
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            45688888888888887655554 7888899999999987665432  23567888999999988755432111 11 12


Q ss_pred             CCCcEEEeeCCCCC---CcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCC
Q 017788           86 ISLQRLYLSGCSNL---RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND  162 (366)
Q Consensus        86 ~~L~~L~Ls~n~~~---~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~  162 (366)
                      ++|..|+|+|+...   ..+..-..++++|.+|||++|..++.  ....     .+...+.|++|+++.+.  +++|..+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~-----~~~kf~~L~~lSlsRCY--~i~p~~~  356 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQ-----EFFKFNYLQHLSLSRCY--DIIPETL  356 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHH-----HHHhcchheeeehhhhc--CCChHHe
Confidence            46777778776321   11212234677888888888755432  1100     23344556666554432  3344332


Q ss_pred             ---ceEEeCCcccCC
Q 017788          163 ---QYFNLSDCLKLD  174 (366)
Q Consensus       163 ---~~l~~l~~l~L~  174 (366)
                         .....+.+|+..
T Consensus       357 ~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  357 LELNSKPSLVYLDVF  371 (419)
T ss_pred             eeeccCcceEEEEec
Confidence               233344555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.25  E-value=0.00037  Score=59.72  Aligned_cols=102  Identities=23%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             CCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch--hcCCCCCCcEEEe
Q 017788           16 NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS--SLCELISLQRLYL   93 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~--~i~~l~~L~~L~L   93 (366)
                      +...+||++|.+ ..++.|..++.|.+|.|..|.+...-|.--..+++|..|.|.+|.+ ..+-+  .+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccch-hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceeee
Confidence            455667776665 4556666677777777776654433333333456677777776653 22211  2335566666666


Q ss_pred             eCCCCCCcch---HHHhccCCCcEEcccc
Q 017788           94 SGCSNLRRIP---ESIINLSKLELLHLKN  119 (366)
Q Consensus        94 s~n~~~~~lp---~~i~~L~~L~~L~L~~  119 (366)
                      -+|.....--   -.+..+++|+.||..+
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            6664332100   1244556666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.19  E-value=0.0002  Score=73.76  Aligned_cols=107  Identities=21%  Similarity=0.170  Sum_probs=56.3

Q ss_pred             CCCCCCEEeccCCCCCCC-CCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCCc
Q 017788           13 NLVNLKEIDLSYSRQLKK-LPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISLQ   89 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~-~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L~   89 (366)
                      .||+|+.|.+++-.+... ... ..++++|+.||++++. +..+ ..+++|++|+.|.+++=.+.. .--..+.+|++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            366677776665433211 112 4466777777777653 3333 456677777777666444221 1112344677777


Q ss_pred             EEEeeCCCCCCcc--h----HHHhccCCCcEEcccccc
Q 017788           90 RLYLSGCSNLRRI--P----ESIINLSKLELLHLKNCS  121 (366)
Q Consensus        90 ~L~Ls~n~~~~~l--p----~~i~~L~~L~~L~L~~n~  121 (366)
                      +||+|.......-  .    +.-..|++|+.||.++..
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            7777764332211  1    111236677777776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.15  E-value=0.00015  Score=66.94  Aligned_cols=139  Identities=16%  Similarity=0.085  Sum_probs=93.2

Q ss_pred             cCCCCCCCEEeccCCCCCCCCC-----C-CCCCCCCcEEecccCCCcc----ccCccccCCcCCcEEecccccccC----
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLP-----D-LSQARNLENLLLKACSSLV----ETHSSIQYLSKLVTLDMRLCKNLN----   76 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p-----~-l~~l~~L~~L~L~~n~~~~----~~p~~i~~L~~L~~L~L~~n~~~~----   76 (366)
                      ...-+.||++....|++ +.-+     . |...+.|+.+.++.|.+..    .+...+..+++|+.|||++|.+..    
T Consensus       153 ~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~  231 (382)
T KOG1909|consen  153 AASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV  231 (382)
T ss_pred             cCCCcceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence            44567899999998887 3333     2 5667889999998885532    234567788999999999998653    


Q ss_pred             ccchhcCCCCCCcEEEeeCCCCCCcchH----HHh-ccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcc
Q 017788           77 RLPSSLCELISLQRLYLSGCSNLRRIPE----SII-NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS  151 (366)
Q Consensus        77 ~lp~~i~~l~~L~~L~Ls~n~~~~~lp~----~i~-~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~  151 (366)
                      .+...++.+++|+.|++++|.+...--.    .+. ..++|+.|.+.+|.+...--.-.    ...+...+.|..|.++.
T Consensus       232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l----a~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL----AACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH----HHHHhcchhhHHhcCCc
Confidence            3445666788899999999865443222    222 36789999999986543211000    00123356788888888


Q ss_pred             ccc
Q 017788          152 FLF  154 (366)
Q Consensus       152 n~l  154 (366)
                      |.+
T Consensus       308 N~l  310 (382)
T KOG1909|consen  308 NRL  310 (382)
T ss_pred             ccc
Confidence            887

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.08  E-value=0.00034  Score=72.13  Aligned_cols=106  Identities=21%  Similarity=0.230  Sum_probs=72.5

Q ss_pred             CCCCEEeccCCCCC-CCCCC--CCCCCCCcEEecccCCCcc-ccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           15 VNLKEIDLSYSRQL-KKLPD--LSQARNLENLLLKACSSLV-ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~-~~~p~--l~~l~~L~~L~L~~n~~~~-~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      .+|+.||+++.... ...|.  -..+|+|+.|.+.+-.... .+-.-..++++|..||++++. +..+ .++++|++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence            46888888875543 22232  3467899999998743321 223345678999999999888 4555 67889999999


Q ss_pred             EEeeCCCCCC-cchHHHhccCCCcEEccccccc
Q 017788           91 LYLSGCSNLR-RIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        91 L~Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      |.+.+-.+.. ..-..+.+|++|+.||+|..+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            9887644332 1224577899999999987543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.06  E-value=3.9e-05  Score=61.72  Aligned_cols=57  Identities=16%  Similarity=0.335  Sum_probs=25.5

Q ss_pred             cCCcEEecccccccCccchhcC-CCCCCcEEEeeCCCCCCcchHHHhccCCCcEEccccc
Q 017788           62 SKLVTLDMRLCKNLNRLPSSLC-ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC  120 (366)
Q Consensus        62 ~~L~~L~L~~n~~~~~lp~~i~-~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n  120 (366)
                      ..|...+|++|. ...+|+.|. ..+.+++|++++|. +..+|..+..++.|+.|+++.|
T Consensus        53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC
Confidence            334444555444 344444333 23344555554442 2244444444455555544444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.99  E-value=0.0005  Score=61.12  Aligned_cols=87  Identities=23%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccc--cccCccchhcCCCCCCcEEEeeCCCCCC--cchHHHhcc
Q 017788           34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC--KNLNRLPSSLCELISLQRLYLSGCSNLR--RIPESIINL  109 (366)
Q Consensus        34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n--~~~~~lp~~i~~l~~L~~L~Ls~n~~~~--~lp~~i~~L  109 (366)
                      ...+..|+.|.+.++..++.  ..+-.|++|+.|.++.|  ...+.++-....+++|++|++++|.+..  ++ ..+..+
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhh
Confidence            34556666666666543322  23456778888888888  5555565555566888888888886531  12 234566


Q ss_pred             CCCcEEcccccccc
Q 017788          110 SKLELLHLKNCSKL  123 (366)
Q Consensus       110 ~~L~~L~L~~n~~l  123 (366)
                      .+|..|++.+|...
T Consensus       116 ~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVT  129 (260)
T ss_pred             cchhhhhcccCCcc
Confidence            77788888877543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.0001  Score=66.61  Aligned_cols=145  Identities=18%  Similarity=0.210  Sum_probs=78.1

Q ss_pred             CCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCC-cchHHHhccCCC
Q 017788           36 QARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLR-RIPESIINLSKL  112 (366)
Q Consensus        36 ~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L  112 (366)
                      ..+.++.|+|.+|.+..  ++..-..+++.|++|||+.|.+...+...-..+.+|++|.|.|..+.- ..-..+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45678888888874432  223335678888888888877543221111256678888887754322 223445667777


Q ss_pred             cEEcccccccccc------cCCCCCCccEEecCCC---------------cCCccccCcccccccC-CCCCCceEEeCCc
Q 017788          113 ELLHLKNCSKLLS------LPELPCNLFSVGVRRC---------------TSLEALSSFSFLFSAM-SPHNDQYFNLSDC  170 (366)
Q Consensus       113 ~~L~L~~n~~l~~------lp~l~~~L~~L~l~~~---------------~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~  170 (366)
                      +.|.++.|..-+-      +....+.++++.+..|               +++..+-+..+.+... -......+..+.|
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            7777777632211      1111122333333332               3344444444433221 1122345667778


Q ss_pred             ccCChhhhhc
Q 017788          171 LKLDQNELKG  180 (366)
Q Consensus       171 l~L~~n~l~~  180 (366)
                      |+|+.|++..
T Consensus       229 LnL~~~~ids  238 (418)
T KOG2982|consen  229 LNLGANNIDS  238 (418)
T ss_pred             hhhccccccc
Confidence            8898887764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=4.8e-05  Score=68.77  Aligned_cols=86  Identities=24%  Similarity=0.265  Sum_probs=54.9

Q ss_pred             CCcEEecccCCCcc-ccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcch--HHHhccCCCcEE
Q 017788           39 NLENLLLKACSSLV-ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIP--ESIINLSKLELL  115 (366)
Q Consensus        39 ~L~~L~L~~n~~~~-~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp--~~i~~L~~L~~L  115 (366)
                      .|++|||+...+.. .+..-+..+.+|+.|.|.++++...+-..+.+-.+|+.|+|++|+......  --+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            37777777643321 123334556777777777777666666667777778888888776554322  235667778888


Q ss_pred             ccccccccc
Q 017788          116 HLKNCSKLL  124 (366)
Q Consensus       116 ~L~~n~~l~  124 (366)
                      +++.|...+
T Consensus       266 NlsWc~l~~  274 (419)
T KOG2120|consen  266 NLSWCFLFT  274 (419)
T ss_pred             CchHhhccc
Confidence            888775543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.50  E-value=0.0058  Score=54.92  Aligned_cols=111  Identities=17%  Similarity=0.096  Sum_probs=76.3

Q ss_pred             cCCCCCCCEEeccCCCCCCCCC----C-CCCCCCCcEEecccCCCccccC-c-------------cccCCcCCcEEeccc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLP----D-LSQARNLENLLLKACSSLVETH-S-------------SIQYLSKLVTLDMRL   71 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p----~-l~~l~~L~~L~L~~n~~~~~~p-~-------------~i~~L~~L~~L~L~~   71 (366)
                      +-+|++|+..+||.|.+....|    + ++..+.|.+|.|++|.. +.+. .             -..+-+.|++.....
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            4579999999999999866655    3 68889999999998843 3221 1             123457899999888


Q ss_pred             ccccCccch-----hcCCCCCCcEEEeeCCCCCCc-----chHHHhccCCCcEEcccccccc
Q 017788           72 CKNLNRLPS-----SLCELISLQRLYLSGCSNLRR-----IPESIINLSKLELLHLKNCSKL  123 (366)
Q Consensus        72 n~~~~~lp~-----~i~~l~~L~~L~Ls~n~~~~~-----lp~~i~~L~~L~~L~L~~n~~l  123 (366)
                      |++ ...|.     .+..-..|+++.+..|.+...     +-.++..+.+|+.||+.+|.+.
T Consensus       167 NRl-engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         167 NRL-ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             chh-ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            883 33332     232335788888888764321     1123456788999999988654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.48  E-value=0.0034  Score=53.97  Aligned_cols=84  Identities=26%  Similarity=0.203  Sum_probs=64.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCC-CCCCCcEEecccCCCccccC--ccccCCcCCcEEecccccccCccc----hhcC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLS-QARNLENLLLKACSSLVETH--SSIQYLSKLVTLDMRLCKNLNRLP----SSLC   83 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~-~l~~L~~L~L~~n~~~~~~p--~~i~~L~~L~~L~L~~n~~~~~lp----~~i~   83 (366)
                      |..++.|.+|.|.+|+++..-|.+. -+++|..|.|.+|++ ..+.  .-+..+++|++|.+-+|... .-+    -.+.
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~  137 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLY  137 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceeeecCCchh-cccCceeEEEE
Confidence            6788999999999999987777754 567899999999854 3332  23567899999999998843 222    2467


Q ss_pred             CCCCCcEEEeeCC
Q 017788           84 ELISLQRLYLSGC   96 (366)
Q Consensus        84 ~l~~L~~L~Ls~n   96 (366)
                      .+++|++||..+-
T Consensus       138 klp~l~~LDF~kV  150 (233)
T KOG1644|consen  138 KLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcceEeehhhh
Confidence            8999999998764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.0002  Score=64.29  Aligned_cols=100  Identities=21%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch--hcCCCCCCcE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS--SLCELISLQR   90 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~--~i~~l~~L~~   90 (366)
                      .+.+.+.|++.+|.+ ..+.-..+++.|++|.|+-|++...  ..+..+++|+.|+|+.|. +..+.+  -+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L-~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGL-DDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCc-cHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhh
Confidence            356777888888876 3443356788899999998865443  347788899999998887 444433  2457888888


Q ss_pred             EEeeCCCCCCcchH-----HHhccCCCcEEc
Q 017788           91 LYLSGCSNLRRIPE-----SIINLSKLELLH  116 (366)
Q Consensus        91 L~Ls~n~~~~~lp~-----~i~~L~~L~~L~  116 (366)
                      |-|..|.-.+.-+.     .+.-|++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888776665543     345577777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.29  E-value=0.0032  Score=56.08  Aligned_cols=64  Identities=17%  Similarity=0.097  Sum_probs=44.5

Q ss_pred             cccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC--CCCCcchHHHhccCCCcEEccccccc
Q 017788           57 SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC--SNLRRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        57 ~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n--~~~~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      -...+..|+.|.+.++..++ + ..+-.|++|+.|.+|.|  .....++.....+++|++|++++|++
T Consensus        38 l~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             ccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            33445667777777666332 2 23347888999999998  55666666666779999999999864

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.25  E-value=0.00071  Score=60.61  Aligned_cols=163  Identities=15%  Similarity=0.064  Sum_probs=94.8

Q ss_pred             CCCCCCCEEeccCCCCCCCC----CC-CCCCCCCcEEecccCCCccc----cC-------ccccCCcCCcEEeccccccc
Q 017788           12 KNLVNLKEIDLSYSRQLKKL----PD-LSQARNLENLLLKACSSLVE----TH-------SSIQYLSKLVTLDMRLCKNL   75 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~----p~-l~~l~~L~~L~L~~n~~~~~----~p-------~~i~~L~~L~~L~L~~n~~~   75 (366)
                      ..+..++.++||+|.+.+.-    .. +.+-.+|+..+++.- .++.    ++       +.+.++++|+..+|++|.+.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34778889999999875442    22 666788888888763 3322    22       34567899999999999876


Q ss_pred             Cccchh----cCCCCCCcEEEeeCCCCCCcch-HHH-------------hccCCCcEEcccccccccccCCCCCCccEEe
Q 017788           76 NRLPSS----LCELISLQRLYLSGCSNLRRIP-ESI-------------INLSKLELLHLKNCSKLLSLPELPCNLFSVG  137 (366)
Q Consensus        76 ~~lp~~----i~~l~~L~~L~Ls~n~~~~~lp-~~i-------------~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~  137 (366)
                      ...|+.    |+.-+.|.+|.+++|.. +.+. .-|             ..-+.|+......|++ ..-|.-.   ....
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~---~a~~  180 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKEL---SAAL  180 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHH---HHHH
Confidence            666653    45668899999988753 3221 112             2345677777766643 2222100   0000


Q ss_pred             cCCCcCCccccCcccccccC-----CCCCCceEEeCCcccCChhhhhc
Q 017788          138 VRRCTSLEALSSFSFLFSAM-----SPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       138 l~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      +..=..|+.+.+..|.+...     .-.-+..++.|..|+|.+|-++-
T Consensus       181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            11113566666666654321     00112345667777777777654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.0041  Score=56.57  Aligned_cols=35  Identities=11%  Similarity=-0.087  Sum_probs=21.1

Q ss_pred             cCCCcCCccccCcccccccCCCC------CCceEEeCCccc
Q 017788          138 VRRCTSLEALSSFSFLFSAMSPH------NDQYFNLSDCLK  172 (366)
Q Consensus       138 l~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~l~~l~  172 (366)
                      +.+.++|..|.++.+.+...+..      .+++|+.++.|+
T Consensus       245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            44678888888888876543221      234555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.72  E-value=0.02  Score=45.73  Aligned_cols=105  Identities=13%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             eeccCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch-hcCC
Q 017788            8 FLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS-SLCE   84 (366)
Q Consensus         8 ~l~l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~   84 (366)
                      ...+.++++|+.+.+.. .+ ..++.  |.++++|+.+.+.++ ....-...+.++++|+.+.+.+ . ...++. .+..
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~   79 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TI-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSN   79 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT
T ss_pred             HHHHhCCCCCCEEEECC-Ce-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccccc
Confidence            34467777888888774 23 34442  777878888888764 3333334566777788888864 2 333333 4555


Q ss_pred             CCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788           85 LISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN  119 (366)
Q Consensus        85 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~  119 (366)
                      +++|+.+++..+ +...-...+.+. +|+.+.+..
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            788888887653 222222345554 677666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.83  E-value=0.016  Score=31.15  Aligned_cols=18  Identities=33%  Similarity=0.375  Sum_probs=8.1

Q ss_pred             CcEEecccccccCccchhc
Q 017788           64 LVTLDMRLCKNLNRLPSSL   82 (366)
Q Consensus        64 L~~L~L~~n~~~~~lp~~i   82 (366)
                      |++|+|++|++ +.+|++|
T Consensus         2 L~~Ldls~n~l-~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNL-TSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEE-SEEGTTT
T ss_pred             ccEEECCCCcC-EeCChhh
Confidence            44455555542 2444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=0.0024  Score=57.49  Aligned_cols=64  Identities=22%  Similarity=0.112  Sum_probs=32.3

Q ss_pred             CCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           84 ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        84 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      +|+.|++|.||-|.+...  +.+..+++|+.|+|..|. +.++-++.      .+.++++|+.|.+..|...+
T Consensus        39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~-I~sldEL~------YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC-IESLDELE------YLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc-cccHHHHH------HHhcCchhhhHhhccCCccc
Confidence            555666666666544322  234555666666666552 22222211      34455566666666555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.83  E-value=0.16  Score=40.30  Aligned_cols=95  Identities=17%  Similarity=0.252  Sum_probs=50.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELIS   87 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~   87 (366)
                      +.++++|+.+++..+ + ..+++  |.++++|+.+.+..+ ....-...+..+++|+.+++..+  ...++ ..+.+. +
T Consensus        31 F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-L-TSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-N  104 (129)
T ss_dssp             TTT-TT-SEEEESST-T-SCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T
T ss_pred             ccccccccccccccc-c-cccceeeeeccccccccccccc-ccccccccccccccccccccCcc--ccEEchhhhcCC-C
Confidence            778889999999875 3 45553  889989999999753 33333456777999999999754  33444 455566 8


Q ss_pred             CcEEEeeCCCCCCcchHHHhccCCC
Q 017788           88 LQRLYLSGCSNLRRIPESIINLSKL  112 (366)
Q Consensus        88 L~~L~Ls~n~~~~~lp~~i~~L~~L  112 (366)
                      |+.+.+..+ ....-...|.+.++|
T Consensus       105 l~~i~~~~~-~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  105 LKEINIPSN-ITKIEENAFKNCTKL  128 (129)
T ss_dssp             --EEE-TTB--SS----GGG-----
T ss_pred             ceEEEECCC-ccEECCccccccccC
Confidence            999888653 222223345555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.78  E-value=0.03  Score=30.07  Aligned_cols=19  Identities=32%  Similarity=0.188  Sum_probs=9.8

Q ss_pred             CcEEecccCCCccccCcccc
Q 017788           40 LENLLLKACSSLVETHSSIQ   59 (366)
Q Consensus        40 L~~L~L~~n~~~~~~p~~i~   59 (366)
                      |++|+|++|.+. .+|++++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555666665333 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.90  E-value=0.003  Score=55.43  Aligned_cols=85  Identities=18%  Similarity=0.151  Sum_probs=43.1

Q ss_pred             CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCc
Q 017788           34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLE  113 (366)
Q Consensus        34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~  113 (366)
                      +......+.||++.|+ +..+...+..++.|..|+++.|. ...+|..++.+..++.+++..| .....|.++++++.++
T Consensus        38 i~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence            4444555555555542 22333344445555555555554 4445555555555555555443 2334555555555555


Q ss_pred             EEcccccc
Q 017788          114 LLHLKNCS  121 (366)
Q Consensus       114 ~L~L~~n~  121 (366)
                      .+++.++.
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            55555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.27  E-value=0.079  Score=52.21  Aligned_cols=111  Identities=26%  Similarity=0.282  Sum_probs=63.6

Q ss_pred             CCCCCCEEeccCCCCCCCC---CCCCCCCCCcEEecccC-CCccccC----ccccCCcCCcEEecccccccC-ccchhcC
Q 017788           13 NLVNLKEIDLSYSRQLKKL---PDLSQARNLENLLLKAC-SSLVETH----SSIQYLSKLVTLDMRLCKNLN-RLPSSLC   83 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~---p~l~~l~~L~~L~L~~n-~~~~~~p----~~i~~L~~L~~L~L~~n~~~~-~lp~~i~   83 (366)
                      .+++|+.|.+..+......   +.....++|+.|++++| ......+    .....+++|+.|+++.+...+ ..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            4677777777776544431   23566778888888763 2222221    233455778888888777322 2112222


Q ss_pred             -CCCCCcEEEeeCCCC-CCc-chHHHhccCCCcEEcccccccc
Q 017788           84 -ELISLQRLYLSGCSN-LRR-IPESIINLSKLELLHLKNCSKL  123 (366)
Q Consensus        84 -~l~~L~~L~Ls~n~~-~~~-lp~~i~~L~~L~~L~L~~n~~l  123 (366)
                       .+++|++|.+.+|.. +.. +-.....+++|++|++++|..+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence             367788888777753 221 2223345677888888877554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.09  E-value=0.14  Score=25.53  Aligned_cols=10  Identities=40%  Similarity=0.458  Sum_probs=3.0

Q ss_pred             CcEEeccccc
Q 017788           64 LVTLDMRLCK   73 (366)
Q Consensus        64 L~~L~L~~n~   73 (366)
                      |+.|+|++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=90.91  E-value=0.05  Score=51.80  Aligned_cols=112  Identities=19%  Similarity=0.302  Sum_probs=62.0

Q ss_pred             CCCCCEEeccCCCCCCCCC--C-CCCCCCCcEEecccCCCccccC--ccccCCcCCcEEecccccccCccc-hhc-CCCC
Q 017788           14 LVNLKEIDLSYSRQLKKLP--D-LSQARNLENLLLKACSSLVETH--SSIQYLSKLVTLDMRLCKNLNRLP-SSL-CELI   86 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~n~~~~~~p--~~i~~L~~L~~L~L~~n~~~~~lp-~~i-~~l~   86 (366)
                      ..-+.++++..|...+...  . -..+..|++|..++|...+..+  .-..+..+|+.|-+..|+..+..- ..+ .+.+
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            3445566666664433322  1 2356677888888776544321  123456778888888877543221 111 2567


Q ss_pred             CCcEEEeeCCCCCCc--chHHHhccCCCcEEcccccccccc
Q 017788           87 SLQRLYLSGCSNLRR--IPESIINLSKLELLHLKNCSKLLS  125 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~--lp~~i~~L~~L~~L~L~~n~~l~~  125 (366)
                      .|+.+++.+|.....  +-.--.+++.|+.|.+++|..++.
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence            777787777643221  111123566788888887765544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.92  E-value=0.081  Score=45.67  Aligned_cols=80  Identities=26%  Similarity=0.350  Sum_probs=42.9

Q ss_pred             CcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcC-CCCCCcEEEeeCCCCCCc-chHHHhccCCCcEEc
Q 017788           40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLC-ELISLQRLYLSGCSNLRR-IPESIINLSKLELLH  116 (366)
Q Consensus        40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~-~l~~L~~L~Ls~n~~~~~-lp~~i~~L~~L~~L~  116 (366)
                      ++.++-+++.+..+--+.+.+++.++.|.+.+|+.....- +-++ -.++|+.|+|++|..+.. --..+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            5566666554433333445666667777777766543211 0111 346677777777754322 224556666666666


Q ss_pred             ccc
Q 017788          117 LKN  119 (366)
Q Consensus       117 L~~  119 (366)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.78  E-value=0.26  Score=47.15  Aligned_cols=134  Identities=22%  Similarity=0.294  Sum_probs=78.6

Q ss_pred             CCCCCCEEeccCCCCCCCCC--C-CCCCCCCcEEecccCCCccccC-ccc-cCCcCCcEEecccccccCc--cchhcCCC
Q 017788           13 NLVNLKEIDLSYSRQLKKLP--D-LSQARNLENLLLKACSSLVETH-SSI-QYLSKLVTLDMRLCKNLNR--LPSSLCEL   85 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~n~~~~~~p-~~i-~~L~~L~~L~L~~n~~~~~--lp~~i~~l   85 (366)
                      .+..|++|+.+++...+..+  . ..+..+|++|.+++|+..+..- ..+ .+.+.|+.+++..|.....  +-..-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            46678888888776543333  2 3466888888888886544321 112 3567788888887764322  22222367


Q ss_pred             CCCcEEEeeCCCCCCcc-----hHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccc
Q 017788           86 ISLQRLYLSGCSNLRRI-----PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL  153 (366)
Q Consensus        86 ~~L~~L~Ls~n~~~~~l-----p~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~  153 (366)
                      +.|+.|.+++|......     -..-..+..|..+.|++|+.+..--     |+  .+..|++|+.+.+...+
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-----Le--~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-----LE--HLSICRNLERIELIDCQ  437 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-----HH--HHhhCcccceeeeechh
Confidence            78888888877544322     1222345567788888876543211     11  35567777776665443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.33  E-value=0.0065  Score=53.40  Aligned_cols=86  Identities=13%  Similarity=0.019  Sum_probs=64.8

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +......+.||++.|++...--.|+-++.|..|+++.| .+..+|..++.+..++.+++..|. ....|.+++.++.++.
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence            55667778888888876443335777788888888876 456678888888888888887666 7778888888888888


Q ss_pred             EEeeCCCC
Q 017788           91 LYLSGCSN   98 (366)
Q Consensus        91 L~Ls~n~~   98 (366)
                      +++.++.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            88877753

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.78  E-value=0.19  Score=49.53  Aligned_cols=87  Identities=28%  Similarity=0.351  Sum_probs=53.2

Q ss_pred             CCCCCcEEecccCCCccc--cCccccCCcCCcEEecccc-cccCccc----hhcCCCCCCcEEEeeCCC-CCCcchHHHh
Q 017788           36 QARNLENLLLKACSSLVE--THSSIQYLSKLVTLDMRLC-KNLNRLP----SSLCELISLQRLYLSGCS-NLRRIPESII  107 (366)
Q Consensus        36 ~l~~L~~L~L~~n~~~~~--~p~~i~~L~~L~~L~L~~n-~~~~~lp----~~i~~l~~L~~L~Ls~n~-~~~~lp~~i~  107 (366)
                      ..++|+.|.+.+|..+..  +-.....++.|+.|++++| ......+    .....+++|+.|+++.+. +....-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            467788888887766555  3345567788888888763 2222222    223356788888888876 3322223333


Q ss_pred             c-cCCCcEEccccccc
Q 017788          108 N-LSKLELLHLKNCSK  122 (366)
Q Consensus       108 ~-L~~L~~L~L~~n~~  122 (366)
                      . +++|+.|.+.+|..
T Consensus       266 ~~c~~L~~L~l~~c~~  281 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSN  281 (482)
T ss_pred             hhCCCcceEccCCCCc
Confidence            3 67888888777753

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.92  E-value=0.85  Score=25.24  Aligned_cols=11  Identities=27%  Similarity=0.326  Sum_probs=4.7

Q ss_pred             CCcEEeccccc
Q 017788           63 KLVTLDMRLCK   73 (366)
Q Consensus        63 ~L~~L~L~~n~   73 (366)
                      +|++|+|++|.
T Consensus         3 ~L~~L~L~~N~   13 (26)
T smart00370        3 NLRELDLSNNQ   13 (26)
T ss_pred             CCCEEECCCCc
Confidence            34444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.92  E-value=0.85  Score=25.24  Aligned_cols=11  Identities=27%  Similarity=0.326  Sum_probs=4.7

Q ss_pred             CCcEEeccccc
Q 017788           63 KLVTLDMRLCK   73 (366)
Q Consensus        63 ~L~~L~L~~n~   73 (366)
                      +|++|+|++|.
T Consensus         3 ~L~~L~L~~N~   13 (26)
T smart00369        3 NLRELDLSNNQ   13 (26)
T ss_pred             CCCEEECCCCc
Confidence            34444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	366
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		3e-08

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 12  KNLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           + LVNL+ + L ++  ++ LP  ++  +NL++L ++  S L     +I +L KL  LD+R
Sbjct: 180 QGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLR 237
Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP--- 127
            C  L   P        L+RL L  CSNL  +P  I  L++LE L L+ C  L  LP   
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 128 -ELPCN 132
            +LP N
Sbjct: 298 AQLPAN 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 1e-25
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 69
            + LVNL+ + L ++  ++ LP  ++  +NL++L ++    L     +I +L KL  LD+
Sbjct: 179 HQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDL 236

Query: 70  RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL 129
           R C  L   P        L+RL L  CSNL  +P  I  L++LE L L+ C  L  LP L
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 130 PCNLFS 135
              L +
Sbjct: 297 IAQLPA 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 3e-25
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD----------LSQARNLENLLLKACSSLVETHSSIQY 60
           + +L  L+E+ +    +L +LP+               NL++L L   + +    +SI  
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIAN 204

Query: 61  LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120
           L  L +L +R    L+ L  ++  L  L+ L L GC+ LR  P      + L+ L LK+C
Sbjct: 205 LQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 121 SKLLSLPELPCNLFSV---GVRRCTSLEAL 147
           S LL+LP     L  +    +R C +L  L
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 13  NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71
           NL NLK + +  S  L  L   +     LE L L+ C++L          + L  L ++ 
Sbjct: 204 NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 72  CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPC 131
           C NL  LP  +  L  L++L L GC NL R+P  I  L    ++ +    +       P 
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

Query: 132 NL 133
             
Sbjct: 323 AR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 6e-19
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 22/146 (15%)

Query: 13  NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71
                  ++L     L + PD   +  +L+++ +   + L+E   ++Q  + L TL +  
Sbjct: 79  TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTI-DAAGLMELPDTMQQFAGLETLTLAR 136

Query: 72  CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIIN---------LSKLELLHLKNCSK 122
              L  LP+S+  L  L+ L +  C  L  +PE + +         L  L+ L L   + 
Sbjct: 137 NP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTG 194

Query: 123 LLSLPELPCNLFSVGVRRCTSLEALS 148
           + SLP    NL         +L++L 
Sbjct: 195 IRSLPASIANL--------QNLKSLK 212

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 1e-16
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 30/194 (15%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLEN-------------------LLLKACSS 50
             +    + +    S  L+   D LSQ +   N                   +  +   +
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67

Query: 51  LVETHSSIQYLS--KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIIN 108
           L  T   ++  +    V L++R    L + P     L  LQ + +     L  +P+++  
Sbjct: 68  LKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQ 125

Query: 109 LSKLELLHLKNCSKLLSLPELPCNLFS---VGVRRCTSLEALSSFSFLFSAMSPHNDQYF 165
            + LE L L     L +LP    +L     + +R C  L  L       +  S  +    
Sbjct: 126 FAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPE-PLASTDASGEHQGLV 183

Query: 166 NLSDCLKLDQNELK 179
           NL   L+L+   ++
Sbjct: 184 NLQS-LRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 9/101 (8%)

Query: 51  LVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLS 110
           +  +H    + S    L  +    L      L +         +   +  R      N +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56

Query: 111 KLELLHLKNCSKLLSLPELPCNLFSVGVR----RCTSLEAL 147
             ++        L +  +L  +    G      R   L   
Sbjct: 57  NPQIETR-TGRALKATADLLEDATQPGRVALELRSVPLPQF 96

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 1/77 (1%)

Query: 13  NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71
               LK + L     L  LP  + +   LE L L+ C +L    S I  L     + +  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 72  CKNLNRLPSSLCELISL 88
                          + 
Sbjct: 311 HLQAQLDQHRPVARPAE 327

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 29/200 (14%)

Query: 11  LKNLVNLKEIDLSY---------SRQLKKLPDLSQARNLENLLLKACS-SLVETHSSIQY 60
           LK L  ++ I+++              + L D      ++ + +   +       +S+Q 
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 61  LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKN 119
           + KL  L+      L     +    I L  L L+    +  IP +      ++E L   +
Sbjct: 329 MKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAH 386

Query: 120 CSKLLSLPELPCNLFSVGVRRCTSLEAL--------SSFSFLFSAMSPHNDQYFNLSDCL 171
             KL  +P           +  + + A+        S     F  + P   +  N+S  +
Sbjct: 387 N-KLKYIPN------IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS-I 438

Query: 172 KLDQNELKGIAEDALQKIQQ 191
            L  N++    ++       
Sbjct: 439 NLSNNQISKFPKELFSTGSP 458

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 13/140 (9%), Positives = 43/140 (30%), Gaps = 9/140 (6%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 69
            +  +   +I    +  +  +   + +   L    +     + E                
Sbjct: 179 SRITLKDTQIGQLSN-NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS----- 232

Query: 70  RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL 129
              +           L  L  + +  C NL ++P  +  L +++L+++    + +S  +L
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQL 291

Query: 130 PCNLFS-VGVRRCTSLEALS 148
             +  +         ++ + 
Sbjct: 292 KDDWQALADAPVGEKIQIIY 311

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 27/188 (14%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSSIQYLSKLVTL 67
             + + L  ++L+Y+ Q+ ++P         +ENL         +      + +S +  +
Sbjct: 349 FGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 68  DMR-------LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKN 119
           D           KN + L  +  + I++  + LS    + + P+ +    S L  ++L  
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG 466

Query: 120 CSKLLSLPELPCNLFSVGVRRCTSLEALS----SFSFLFSAMSPHNDQYFNLSD--CLKL 173
              L  +P+      +   +    L ++       + L       + +   L     + L
Sbjct: 467 N-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-----SDDFRATTLPYLVGIDL 520

Query: 174 DQNELKGI 181
             N     
Sbjct: 521 SYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 19/187 (10%), Positives = 48/187 (25%), Gaps = 57/187 (30%)

Query: 11  LKNLVNLKEIDLSY--SRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLD 68
           +  L  L+ + L     +  ++L          +   K    +    + + Y  +    D
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 69  M------------------RLCKNLNRL----------PSSLCELISLQRLYLSGCS--- 97
           +                  R+     ++            ++  L  L++ Y+       
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 98  ----------------NLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC 141
                             +       NL  L  + + NC  L  LP          ++  
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT--------FLKAL 272

Query: 142 TSLEALS 148
             ++ ++
Sbjct: 273 PEMQLIN 279

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 21/136 (15%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPD---------LSQARNLENLLLKACSSLVETHSSIQY 60
           +      L  I+L  +  L ++P                L ++ L+    L +     + 
Sbjct: 452 LFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRA 509

Query: 61  --LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRR------IPESIINLSKL 112
             L  LV +D+    + ++ P+      +L+   +    + +        PE I     L
Sbjct: 510 TTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 113 ELLHLKNCSKLLSLPE 128
             L + +   +  + E
Sbjct: 569 TQLQIGSN-DIRKVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 11/116 (9%)

Query: 9   LILKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH------SSIQYL 61
                L  L  IDLSY+    K P     +  L+   ++                 I   
Sbjct: 507 FRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 62  SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHL 117
             L  L +    ++ ++   +    ++  L +    N+      +    +  +  L
Sbjct: 566 PSLTQLQIGSN-DIRKVNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 16/145 (11%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLL----KACSSLVETHSSIQYLSKLV 65
           L +   +  + L       ++PD + Q   LE L L    +  +  +     I       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 66  TLDMRLCKNLNRLPSSL--CELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL 123
                               +   L +  ++     + I +S     K   +   + + +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNI 195

Query: 124 LSLPELPCNLFSVGVRRCTSLEALS 148
             + +         V R T L    
Sbjct: 196 TFVSK--------AVMRLTKLRQFY 212

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 16/141 (11%), Positives = 41/141 (29%), Gaps = 4/141 (2%)

Query: 42  NLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRR 101
           N   +      +   S+    ++  L +       R+P ++ +L  L+ L L   S+  +
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALG--SHGEK 118

Query: 102 IPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN 161
           + E +     +         + + +      +        + L      +      S   
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD-CINSDPQQKSIKK 177

Query: 162 DQYFNLSDC-LKLDQNELKGI 181
                L D  +    N +  +
Sbjct: 178 SSRITLKDTQIGQLSNNITFV 198

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 3/117 (2%)

Query: 13  NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC 72
            + +L  I L+    +  L  +  A N+++L +         ++ I  LS L  L +   
Sbjct: 42  QMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIH--ATNYNPISGLSNLERLRIMGK 98

Query: 73  KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL 129
              +    +L  L SL  L +S  ++   I   I  L K+  + L     +  +  L
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 19/122 (15%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           ++   N+K++ ++          +S   NLE L +       +   ++  L+ L  LD+ 
Sbjct: 62  IEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLPE 128
              + + + + +  L  +  + LS    +  I   +  L +L+ L+++         + +
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIED 179

Query: 129 LP 130
            P
Sbjct: 180 FP 181

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 15/128 (11%)

Query: 4   TNLRFLIL-----------KNLVNLKEIDLSYSR-QLKKLPDLSQARNLENLLLKACSSL 51
            N++ L +             L NL+ + +        K+P+LS   +L  L +   +  
Sbjct: 66  HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 52  VETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSK 111
               + I  L K+ ++D+     +  +   L  L  L+ L +     +      I +  K
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD-GVHDY-RGIEDFPK 182

Query: 112 LELLHLKN 119
           L  L+  +
Sbjct: 183 LNQLYAFS 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 4   TNLRFLILKN---------LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVET 54
           + L+ + + N           +L+ I    + QL++LP+L     L  +     +SL + 
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYA-DNNSLKKL 210

Query: 55  HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL 114
                 L  +V        N+      L  L  L  +Y      L+ +P+   +L  L +
Sbjct: 211 PDLPLSLESIV-----AGNNILEELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNV 264

Query: 115 LHLKNCSKLLSLPELPCNL 133
                   L  LPELP +L
Sbjct: 265 RDN----YLTDLPELPQSL 279

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 47/172 (27%)

Query: 2   ERTNLRFLILKNLV-----NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHS 56
                R + +  L         E++L+    L  LP+L    +LE+L+  +C+SL E   
Sbjct: 53  GNGEQREMAVSRLRDCLDRQAHELELNN-LGLSSLPELPP--HLESLVA-SCNSLTELPE 108

Query: 57  SIQYLSKLVTLDMRLCKNLNRLPSSLCELI----------------SLQRLYLSGCSNLR 100
             Q L  L+  +  L   L+ LP  L  L                  L+ + +    +L+
Sbjct: 109 LPQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLK 166

Query: 101 RIPES-------------------IINLSKLELLHLKNCSKLLSLPELPCNL 133
           ++P+                    + NL  L  ++  N   L  LP+LP +L
Sbjct: 167 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLKKLPDLPLSL 217

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 26/139 (18%)

Query: 4   TNLRFLILKN---------LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVET 54
            +L  L + N            L+ +  S++  L ++P+L Q  NL+ L +   + L E 
Sbjct: 317 PSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPELPQ--NLKQLHV-EYNPLREF 372

Query: 55  HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL 114
               + +  L     R+  +L  +P       +L++L++     LR  P+   ++  L +
Sbjct: 373 PDIPESVEDL-----RMNSHLAEVPELPQ---NLKQLHVETN-PLREFPDIPESVEDLRM 423

Query: 115 LHLKNCSKLLSLPELPCNL 133
                  +++   E     
Sbjct: 424 NSE----RVVDPYEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 12/76 (15%)

Query: 70  RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS-------- 121
           R   NL  +P     + S    Y +     R  P       ++ +  L++C         
Sbjct: 18  RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77

Query: 122 ----KLLSLPELPCNL 133
                L SLPELP +L
Sbjct: 78  LNNLGLSSLPELPPHL 93

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 29/167 (17%)

Query: 9   LILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVET------HSSIQYLS 62
           + L     L   DL     + + P++   +    + LK       T        +IQ L+
Sbjct: 390 MFLDYDQRLNLSDLLQD-AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 63  KLVTLDMRLCK-------------------NLNRLPSSLCELISLQRLYLSGCSNLRRIP 103
           KL  +                                S   L  L  + L  C N+ ++P
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 104 ESIINLSKLELLHLKNCSKLLSLPELPCNLFSV--GVRRCTSLEALS 148
           + + +L +L+ L++    + +S  +L  +   +         ++   
Sbjct: 509 DFLYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFY 554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 24/157 (15%)

Query: 6   LRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-------SLVETHS 56
              +     +N   + LSY+ +++K P    +    +  ++L           SL     
Sbjct: 664 SCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 57  SIQYLSKLVTLDMRLCKN-LNRLPSSL--CELISLQRLYLSGCSNLRRIPESIINLSKLE 113
           + +    L T+D  L  N L  L        L  L  + +S        P   +N S+L+
Sbjct: 723 NYKNTYLLTTID--LRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLK 779

Query: 114 LLHLKNCSKLLS---LPELPCNLFSVGVRRCTSLEAL 147
              +++         L + P  +       C SL  L
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGI-----TTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 14/144 (9%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENL-LLKACSSLVETHSSIQYLSKLVTLDM 69
                 ++   + Y+  L++ P  +  + +  L LL    + V    +     KL  L  
Sbjct: 544 EDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK- 601

Query: 70  RLCKN-LNRLPSSLCE-LISLQRLYLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLS 125
            L  N +  +P   C     ++ L  S    L+ IP   +  ++  +  +          
Sbjct: 602 -LDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYN----K 655

Query: 126 LPELPCNLF-SVGVRRCTSLEALS 148
           +     N+  S+   +  +   ++
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVT 679

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 27/206 (13%), Positives = 60/206 (29%), Gaps = 36/206 (17%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLL--------LKACSSLVETHSSIQYL 61
                  ++ +  S++ +LK +P++  A+++  +         + +    +         
Sbjct: 614 FCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 62  SKLVTLDMRLCKN-LNRLPSSLCE-LISLQRLYLSGCS-------NLRRIPESIINLSKL 112
               T+   L  N + + P+ L      +  + LS          +L+    +  N   L
Sbjct: 673 INASTVT--LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 113 ELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLE-------ALSSFSFLFSAMSPHNDQYF 165
             + L+   KL SL +               L          SSF       S    + F
Sbjct: 731 TTIDLRFN-KLTSLSD------DFRATTLPYLSNMDVSYNCFSSFPTQPLNSS--QLKAF 781

Query: 166 NLSDCLKLDQNELKGIAEDALQKIQQ 191
            +      + N +       +     
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPS 807

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 9/130 (6%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETH------SSIQYLSKL 64
           +  L  LK +             L     L   + +     +  H         Q L+  
Sbjct: 343 IGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 65  VTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSN-LRRIPESIINLSKLELLHLKNCSKL 123
             L   + +N    P      ISL+   +   +N +  I ++I  L+KL++++  N    
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PF 460

Query: 124 LSLPELPCNL 133
                     
Sbjct: 461 TYDNIAVDWE 470

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 23/143 (16%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD---------LSQARNLENLLLKACSSLVET 54
                 +      +  I LS +  +  +P+               L  + L   + L   
Sbjct: 686 QKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDL-RFNKLTSL 743

Query: 55  HSSIQY--LSKLVTLDMRLCKN-LNRLPSSLCELISLQRLYLSGCSNL------RRIPES 105
               +   L  L  +D  +  N  +  P+       L+   +    +       R+ P  
Sbjct: 744 SDDFRATTLPYLSNMD--VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 106 IINLSKLELLHLKNCSKLLSLPE 128
           I     L  L + +   +  + E
Sbjct: 802 ITTCPSLIQLQIGSN-DIRKVDE 823

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 16/142 (11%), Positives = 39/142 (27%), Gaps = 6/142 (4%)

Query: 42  NLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRR 101
           N   +      +    +    ++  L +       R+P ++ +L  L+ L     S    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 102 IPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS-SFSFLFSAMSPH 160
                      ++   +     +        +F    +R    + L  + +         
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYK----KMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

Query: 161 NDQYFNLSDC-LKLDQNELKGI 181
            D   +L D  +    N +  I
Sbjct: 419 KDSRISLKDTQIGNLTNRITFI 440

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 11/116 (9%)

Query: 9   LILKNLVNLKEIDLSYSRQLKKLPD-LSQARNLE------NLLLKACSSLVETHSSIQYL 61
                L  L  +D+SY+      P     +  L+          +    L +  + I   
Sbjct: 747 FRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805

Query: 62  SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHL 117
             L+ L +    ++ ++   L     L  L ++   N+     S+    +  +  L
Sbjct: 806 PSLIQLQIGSN-DIRKVDEKLTP--QLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 32/203 (15%)

Query: 4   TNLRFLIL-------------KNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKAC 48
            +L  L L              NL NL+ + L  +R LK +P    +   NL  L +   
Sbjct: 56  PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN 114

Query: 49  SSLVETHSSIQYLSKLVTLDMRLCKN-LNRLPS-SLCELISLQRLYLSGCSNLRRIP-ES 105
             ++      Q L  L +L+  +  N L  +   +   L SL++L L  C NL  IP E+
Sbjct: 115 KIVILLDYMFQDLYNLKSLE--VGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEA 171

Query: 106 IINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS-SFSFLFSAMSPHNDQY 164
           + +L  L +L L++     ++  +    F    +R   L+ L  S       M+P+    
Sbjct: 172 LSHLHGLIVLRLRHL----NINAIRDYSF----KRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 165 FNLSDCLKLDQNELKGIAEDALQ 187
            NL+  L +    L  +   A++
Sbjct: 224 LNLTS-LSITHCNLTAVPYLAVR 245

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 29/195 (14%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYL 61
             L   + ++L NLK +++  +  L  +     S   +LE L L+ C+       ++ +L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175

Query: 62  SKLVTLDMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120
             L+ L +R   N+N +   S   L  L+ L +S    L  +  + +    L  L + +C
Sbjct: 176 HGLIVLRLR-HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 121 SKLLSLPELPCNLFSVGVRRCTSLEALS----SFSFL----FSAMSPHNDQYFNLSDCLK 172
               +L  +P        R    L  L+      S +       +         L + ++
Sbjct: 235 ----NLTAVPYLAV----RHLVYLRFLNLSYNPISTIEGSMLHELL-------RLQE-IQ 278

Query: 173 LDQNELKGIAEDALQ 187
           L   +L  +   A +
Sbjct: 279 LVGGQLAVVEPYAFR 293

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKL-PDLSQARNLENLLLKAC--SSLVETHSSIQY 60
             +R    K L  LK +++S+   L  + P+     NL +L +  C  +++   + ++++
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV--PYLAVRH 246

Query: 61  LSKLVTLDMRLCKN-LNRLPS-SLCELISLQRLYLSGCSNLRRIPESI-INLSKLELLHL 117
           L  L  L++    N ++ +    L EL+ LQ + L G   L  +       L+ L +L++
Sbjct: 247 LVYLRFLNLS--YNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNV 303

Query: 118 KNCSKLLSLPE 128
               +L +L E
Sbjct: 304 SGN-QLTTLEE 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 22/136 (16%)

Query: 4   TNLRFLILKN------LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSS 57
             L                L ++ +  + QL  LP L     L+ L + + + L    + 
Sbjct: 104 LELSIFSNPLTHLPALPSGLCKLWIFGN-QLTSLPVLPP--GLQELSV-SDNQLASLPAL 159

Query: 58  IQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHL 117
              L KL   + +L      LP        LQ L +S    L  +P     L KL   + 
Sbjct: 160 PSELCKLWAYNNQL----TSLPMLPS---GLQELSVSDN-QLASLPTLPSELYKLWAYNN 211

Query: 118 KNCSKLLSLPELPCNL 133
               +L SLP LP  L
Sbjct: 212 ----RLTSLPALPSGL 223

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 25/139 (17%)

Query: 4   TNLRFLILKN---------LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVET 54
             L+ L + +            L ++    + QL  LP L     L+ L +     L   
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNN-QLTSLPML--PSGLQELSVSDNQ-LASL 196

Query: 55  HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL 114
            +    L KL   + RL      LP+       L+ L +SG   L  +P     L +L +
Sbjct: 197 PTLPSELYKLWAYNNRL----TSLPALPS---GLKELIVSGN-RLTSLPVLPSELKELMV 248

Query: 115 LHLKNCSKLLSLPELPCNL 133
               N  +L SLP LP  L
Sbjct: 249 SG--N--RLTSLPMLPSGL 263

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 35/118 (29%)

Query: 16  NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNL 75
               +++     L  LPD                            + + TL +    NL
Sbjct: 41  GNAVLNVG-ESGLTTLPD-------------------------CLPAHITTLVIP-DNNL 73

Query: 76  NRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNL 133
             LP+       L+ L +SG   L  +P     L +L +           LP LP  L
Sbjct: 74  TSLPALPP---ELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLT----HLPALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 12  KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC--SSLVETHSSIQYLSKLVTLDM 69
                LKE+ +S + +L  LP L     L+ L++     +SL          S L++L +
Sbjct: 218 ALPSGLKELIVSGN-RLTSLPVLPS--ELKELMVSGNRLTSLPML------PSGLLSLSV 268

Query: 70  RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIIN-LSKLELLHLKNCSKLLSLPE 128
              + L RLP SL  L S   + L G   L       +  ++             ++   
Sbjct: 269 YRNQ-LTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 129 LP 130
            P
Sbjct: 327 AP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
            + L ++ ++ ++   ++  +  +    NLE L L      +   S +  L KL  L + 
Sbjct: 40  QEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ--ITDISPLSNLVKLTNLYIG 96

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL 129
              N     S+L  L +L+ LYL+   N+  I   + NL+K+  L+L     L  L  L
Sbjct: 97  --TNKITDISALQNLTNLRELYLNED-NISDIS-PLANLTKMYSLNLGANHNLSDLSPL 151

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 8e-09
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           L NL  L  +++  + Q+  +  +     L+ L + +    +   S +  LS+L +L + 
Sbjct: 239 LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ--ISDISVLNNLSQLNSLFLN 295

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119
             +  N     +  L +L  L+LS   ++  I   + +LSK++     N
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           + N+  L  + +  + ++  L  L+    L  L +   ++ +   ++++ L+KL  L++ 
Sbjct: 217 VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEI--GTNQISDINAVKDLTKLKMLNV- 272

Query: 71  LCKNLNRL--PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE 128
                N++   S L  L  L  L+L+         E I  L+ L  L L     +  +  
Sbjct: 273 ---GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP 328

Query: 129 L 129
           L
Sbjct: 329 L 329

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
             +L       L  +  +  +    +  ++  L++      V +   I+YL+ L  L++ 
Sbjct: 18  DADLAEGIRAVLQKA-SVTDVVTQEELESITKLVV--AGEKVASIQGIEYLTNLEYLNLN 74

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL 129
             + +  +   L  L+ L  LY+   +N      ++ NL+ L  L+L     +  +  L
Sbjct: 75  GNQ-ITDIS-PLSNLVKLTNLYIG--TNKITDISALQNLTNLRELYLNED-NISDISPL 128

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           L NL  +  ++L  +  L  L  LS    L  L +      V+  + I  L+ L +L   
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--VKDVTPIANLTDLYSLS-- 183

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL 129
           L  N     S L  L SL          +  I   + N+++L  L + N  K+  L  L
Sbjct: 184 LNYNQIEDISPLASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLKIGNN-KITDLSPL 239

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 26/174 (14%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           ++ L NL +I+ S + QL  +  L     L ++L+      +   + +  L+ L  L   
Sbjct: 64  VEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNN--QIADITPLANLTNLTGLT-- 118

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC-SKLLSLPEL 129
           L  N       L  L +L RL LS    +  I  ++  L+ L+ L   N  + L  L  L
Sbjct: 119 LFNNQITDIDPLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGNQVTDLKPLANL 176

Query: 130 PCNLFSVGVR--RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI 181
              L  + +   + + +  L+  +              NL   L    N++  I
Sbjct: 177 T-TLERLDISSNKVSDISVLAKLT--------------NLES-LIATNNQISDI 214

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 44/191 (23%), Positives = 70/191 (36%), Gaps = 38/191 (19%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           L NL NL  + L  + Q+  +  L    NL  L L + +  +   S++  L+ L  L   
Sbjct: 108 LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLS-- 162

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLPE 128
              N       L  L +L+RL +S  SN       +  L+ LE L   N   S +  L  
Sbjct: 163 -FGNQVTDLKPLANLTTLERLDIS--SNKVSDISVLAKLTNLESLIATNNQISDITPLGI 219

Query: 129 LPCNLFSVGVRRC--TSLEALSSFSFLFSAMSPHNDQYFNLSDC---------------- 170
           L  NL  + +       +  L+S + L            +L++                 
Sbjct: 220 LT-NLDELSLNGNQLKDIGTLASLTNL---------TDLDLANNQISNLAPLSGLTKLTE 269

Query: 171 LKLDQNELKGI 181
           LKL  N++  I
Sbjct: 270 LKLGANQISNI 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           L  L NL E+ L+ + QLK +  L+   NL +L L      +   + +  L+KL  L   
Sbjct: 217 LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQ--ISNLAPLSGLTKLTELK-- 271

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL 129
           L  N     S L  L +L  L L+    L  I   I NL  L  L L     +  +  +
Sbjct: 272 LGANQISNISPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDISPV 327

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           LKNL  L +I ++ + Q+  +  L+   NL  L L      +     ++ L+ L  L++ 
Sbjct: 86  LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQ--ITDIDPLKNLTNLNRLELS 142

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLPE 128
              N     S+L  L SLQ+L      N     + + NL+ LE L + +   S +  L +
Sbjct: 143 --SNTISDISALSGLTSLQQLSF---GNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 197

Query: 129 LPCNLFSVGVRRC--TSLEALSSFSFL 153
           L  NL S+       + +  L   + L
Sbjct: 198 LT-NLESLIATNNQISDITPLGILTNL 223

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
              L    +  L  +  +      +    +  L        +++   ++YL+ L  ++  
Sbjct: 20  DTALAEKMKTVLGKT-NVTDTVSQTDLDQVTTLQADRLG--IKSIDGVEYLNNLTQIN-- 74

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL 129
              N     + L  L  L  + ++    +  I   + NL+ L  L L N  ++  +  L
Sbjct: 75  FSNNQLTDITPLKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDIDPL 130

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           L  L  L  ++L+ + QL+ +  +S  +NL  L L   +  +   S +  L+KL  L   
Sbjct: 283 LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN--ISDISPVSSLTKLQRLFFY 339

Query: 71  -----------LCKNLNRL---------PSSLCELISLQRLYLSGCSNLRRIPESIINLS 110
                         N+N L          + L  L  + +L L+        P +     
Sbjct: 340 NNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ-AWTNAPVNYKANV 398

Query: 111 KLELLHLKNCSKLLSLPELPCNL 133
            +    +KN +  L  P    + 
Sbjct: 399 SIPNT-VKNVTGALIAPATISDG 420

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
              L ++ +I  + S  +K +  +    N+  L L    + +     +  L  L  L   
Sbjct: 39  QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFL--NGNKLTDIKPLTNLKNLGWLF-- 93

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLPE 128
           L +N  +  SSL +L  L+ L L     +  I   +++L +LE L+L N   + +  L  
Sbjct: 94  LDENKIKDLSSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNKITDITVLSR 151

Query: 129 LPCNLFSVGVRRC--TSLEALSSFSFL 153
           L   L ++ +     + +  L+  + L
Sbjct: 152 LT-KLDTLSLEDNQISDIVPLAGLTKL 177

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 19/137 (13%)

Query: 4   TNLRFLIL-----------KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLV 52
            N+  L L            NL NL  + L  + ++K L  L   + L++L L+     +
Sbjct: 65  PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHNG--I 121

Query: 53  ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKL 112
              + + +L +L +L   L  N     + L  L  L  L L     +  I   +  L+KL
Sbjct: 122 SDINGLVHLPQLESLY--LGNNKITDITVLSRLTKLDTLSLEDN-QISDI-VPLAGLTKL 177

Query: 113 ELLHLKNCSKLLSLPEL 129
           + L+L     +  L  L
Sbjct: 178 QNLYLSKN-HISDLRAL 193

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 20/190 (10%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKAC--SSLVETHSSIQ 59
             ++    K+L +L+ + LS +  ++ +     +   NL  L L     +++   + +  
Sbjct: 77  QIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTI--PNGAFV 133

Query: 60  YLSKLVTLDMRLCKNLNRLPSSL-CELISLQRLYLSGCSNLRRIPESI-INLSKLELLHL 117
           YLSKL  L +R    +  +PS     + SL+RL L     L  I E     LS L  L+L
Sbjct: 134 YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 118 KNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNE 177
             C  L  +P L              L+ L       SA+ P + Q       L + Q++
Sbjct: 193 AMC-NLREIPNL---------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 178 LKGIAEDALQ 187
           ++ I  +A  
Sbjct: 243 IQVIERNAFD 252

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 24/143 (16%)

Query: 4   TNLRFLIL-------------KNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKAC 48
           + L+ L L               + +L+ +DL   ++L  + +       NL  L L  C
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 49  SSLVETHSSIQYLSKLVTLDMRLCKN-LNRLPS-SLCELISLQRLYLSGCSNLRRIPESI 106
           +  +    ++  L KL  LD  L  N L+ +   S   L+ LQ+L++     ++ I  + 
Sbjct: 196 N--LREIPNLTPLIKLDELD--LSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNA 250

Query: 107 I-NLSKLELLHLKNCSKLLSLPE 128
             NL  L  ++L +   L  LP 
Sbjct: 251 FDNLQSLVEINLAHN-NLTLLPH 272

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKAC--SSLVETHSSIQYLSKLVTL 67
                +LK +DLS++  +  +  +      LE+L  +      + E  S    L  L+ L
Sbjct: 74  DFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYL 131

Query: 68  DMRLCKNLNRLPSSLCE-LISLQRLYLSGCSNLRRIPESI-INLSKLELLHLKNCSKLLS 125
           D+    +     + +   L SL+ L ++G S        I   L  L  L L  C     
Sbjct: 132 DISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC----Q 186

Query: 126 LPELPCNLFS 135
           L +L    F+
Sbjct: 187 LEQLSPTAFN 196

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 18/152 (11%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQA----RNLENLLLKACSSLVETHSSIQ 59
            +L   +   L  L ++ LS +  L      SQ+     +L+ L L     ++   S+  
Sbjct: 41  QSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFL 98

Query: 60  YLSKLVTLDMRLCKNLNRLPSS--LCELISLQRLYLSGCSNLRRIPESI-INLSKLELLH 116
            L +L  LD +   NL ++        L +L  L +S   + R     I   LS LE+L 
Sbjct: 99  GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLK 156

Query: 117 LKNCSKLLSLPELPCNLFSVGVRRCTSLEALS 148
           +   S   +      ++F        +L  L 
Sbjct: 157 MAGNSFQENFLP---DIF----TELRNLTFLD 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 34/197 (17%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSSIQY 60
             ++    ++L +L+ + L  +  ++++     +   +L  L L     +++ + +  +Y
Sbjct: 88  QMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA-FEY 145

Query: 61  LSKLVTLDMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIPESI-INLSKLELLHLK 118
           LSKL  L +R    +  +PS +   + SL RL L     L  I E     L  L+ L+L 
Sbjct: 146 LSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 119 NCSKLLSLPELPCNLFSVGVRRCTSLEALS----SFSFL----FSAMSPHNDQYFNLSDC 170
            C  +  +P L              LE L      F  +    F  +S       +L   
Sbjct: 205 MC-NIKDMPNL---------TPLVGLEELEMSGNHFPEIRPGSFHGLS-------SLKK- 246

Query: 171 LKLDQNELKGIAEDALQ 187
           L +  +++  I  +A  
Sbjct: 247 LWVMNSQVSLIERNAFD 263

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 24/143 (16%)

Query: 4   TNLRFLIL-------------KNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKAC 48
           + LR L L               + +L  +DL   ++L+ + +       NL+ L L  C
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 49  SSLVETHSSIQYLSKLVTLDMRLCKN-LNRLPS-SLCELISLQRLYLSGCSNLRRIPE-S 105
           +  ++   ++  L  L  L+  +  N    +   S   L SL++L++     +  I   +
Sbjct: 207 N--IKDMPNLTPLVGLEELE--MSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNA 261

Query: 106 IINLSKLELLHLKNCSKLLSLPE 128
              L+ L  L+L +   L SLP 
Sbjct: 262 FDGLASLVELNLAHN-NLSSLPH 283

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
              L ++ +I  + S  +K +  +    N+  L L    + +     +  L  L  L   
Sbjct: 42  QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFL--NGNKLTDIKPLANLKNLGWLF-- 96

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLPE 128
           L +N  +  SSL +L  L+ L L     +  I   +++L +LE L+L N   + +  L  
Sbjct: 97  LDENKVKDLSSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNKITDITVLSR 154

Query: 129 LPCNLFSVGVRRC--TSLEALSSFSFL 153
           L   L ++ +     + +  L+  + L
Sbjct: 155 LT-KLDTLSLEDNQISDIVPLAGLTKL 180

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 1   MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSS 57
               N+  +        K I L+ + ++  L D        ++ L LK      V     
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 58  IQYLSKLVTLDMRLCKN-LNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLH 116
                 L  L+  L  N +  +   +     L+ L LS    L  +     + + +  + 
Sbjct: 165 AASSDTLEHLN--LQYNFIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWIS 220

Query: 117 LKNCSKLLSLPELPCNLFSVGVRRCTSLEALS 148
           L+N  KL+ + +         +R   +LE   
Sbjct: 221 LRNN-KLVLIEK--------ALRFSQNLEHFD 243

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 14/128 (10%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYL 61
                 + ++  N+KE+DLS +  L ++    L+    LE L L   S+++     ++ L
Sbjct: 23  KQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNL--SSNVLYETLDLESL 79

Query: 62  SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 121
           S L TLD+    N N +   L    S++ L+ +   N+ R+  S       + ++L N  
Sbjct: 80  STLRTLDL----NNNYV-QELLVGPSIETLHAANN-NISRVSCSR--GQGKKNIYLANN- 130

Query: 122 KLLSLPEL 129
           K+  L +L
Sbjct: 131 KITMLRDL 138

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 18/185 (9%)

Query: 13  NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLK--ACSSLVETHSSIQYLSKLVTLDMR 70
            L +LK +  + + +           +LE L L     S       S    + L  LD+ 
Sbjct: 323 KLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII--NLSKLELLHLKNCSKLLSLPE 128
               +  + S+   L  L+ L      NL+++ E  +  +L  L  L + +         
Sbjct: 382 FNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN 438

Query: 129 LPCNLFSVGVRRCTSLEALS-SFSFLFSAMSPHN-DQYFNLSDCLKLDQNELKGIAEDAL 186
               +F+      +SLE L  + +       P    +  NL+  L L Q +L+ ++  A 
Sbjct: 439 ---GIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLEQLSPTAF 490

Query: 187 QKIQQ 191
             +  
Sbjct: 491 NSLSS 495

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 33/193 (17%), Positives = 74/193 (38%), Gaps = 23/193 (11%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD---LSQARNLENLLLKACSSLVETHSSIQY 60
            +L    + +L  LKE++++++  ++        S   NLE+L L +        + ++ 
Sbjct: 113 ASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 61  LSKLVTLDMRL---CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLH 116
           L ++  L++ L      +N +     + I L +L L    +   + ++ I  L+ LE+  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 117 LKNCSKLLS--LPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK-- 172
           L          L +   +           L  L+   F  + +  + D   +L +CL   
Sbjct: 232 LVLGEFRNEGNLEKFDKSALE-------GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 173 ----LDQNELKGI 181
               L    ++ +
Sbjct: 285 SSFSLVSVTIERV 297

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYL 61
            +L      +   L+ +DLS   +++ + D       +L  L+L           +   L
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 62  SKLVTLDMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRI--PESIINLSKLELLHLK 118
           S L  L      NL  L +  +  L +L+ L ++    ++    PE   NL+ LE L L 
Sbjct: 100 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS 157

Query: 119 NCSKLLSLPELPCNLFS 135
           +      +  + C    
Sbjct: 158 SN----KIQSIYCTDLR 170

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 43/189 (22%), Positives = 67/189 (35%), Gaps = 30/189 (15%)

Query: 16  NLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK 73
           + K +DLS++  L+ L          L+ L L  C        + Q LS L TL +    
Sbjct: 29  STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 74  NLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNL 133
             +    +   L SLQ+L     +        I +L  L+ L++ +   + S        
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFK--LPEY 144

Query: 134 FSVGVRRCTSLEAL------------SSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI 181
           FS      T+LE L            +    L      H     NLS  L L  N +  I
Sbjct: 145 FS----NLTNLEHLDLSSNKIQSIYCTDLRVL------HQMPLLNLS--LDLSLNPMNFI 192

Query: 182 AEDALQKIQ 190
              A ++I+
Sbjct: 193 QPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 22/188 (11%)

Query: 5   NLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKL 64
           +    +   L N+    L     ++++ D S     ++L L    +          L  L
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLEL---VNCKFGQFPTLKLKSL 327

Query: 65  VTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRR--IPESIINLSKLELLHLKNCSK 122
             L      N      S  +L SL+ L LS      +    +S    + L+ L L     
Sbjct: 328 KRLT--FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-G 384

Query: 123 LLSLPELPCNLFSVGVRRCTSLEALSSFSF-LFSAMSPHNDQYFNLSDCLKLD--QNELK 179
           ++++      L          LE L  F       MS  +  + +L + + LD      +
Sbjct: 385 VITMSSNFLGL--------EQLEHL-DFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTR 434

Query: 180 GIAEDALQ 187
                   
Sbjct: 435 VAFNGIFN 442

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 38/189 (20%), Positives = 64/189 (33%), Gaps = 26/189 (13%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACS-SLVETHSSIQYLSKLVTLDM 69
                +LK +DLS++  +    +      LE+L  +  +   +   S    L  L+ LD+
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 70  RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKNCSKLLSLPE 128
                          L SL+ L ++G S        I   L  L  L L  C     L +
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC----QLEQ 484

Query: 129 LPCNLFSVGVRRCTSLEAL--------SSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG 180
           L    F+      +SL+ L        S  +F +  ++       +L   L    N +  
Sbjct: 485 LSPTAFN----SLSSLQVLNMSHNNFFSLDTFPYKCLN-------SLQV-LDYSLNHIMT 532

Query: 181 IAEDALQKI 189
             +  LQ  
Sbjct: 533 SKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 35/194 (18%), Positives = 64/194 (32%), Gaps = 20/194 (10%)

Query: 5   NLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLK--ACSSLVETHSSIQYLS 62
                    L +LK +  + + +           +LE L L     S       S    +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 63  KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKNCS 121
            L  LD+     +  + S+   L  L+ L     +  +    S+  +L  L  L + +  
Sbjct: 374 SLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 122 KLLSLPELPCNLFSVGVRRCTSLEALS----SFSFLFSAMSPHNDQYFNLSDCLKLDQNE 177
             ++   +   L        +SLE L     SF   F        +  NL+  L L Q +
Sbjct: 433 TRVAFNGIFNGL--------SSLEVLKMAGNSFQENFLPDIFTELR--NLTF-LDLSQCQ 481

Query: 178 LKGIAEDALQKIQQ 191
           L+ ++  A   +  
Sbjct: 482 LEQLSPTAFNSLSS 495

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 34/188 (18%), Positives = 74/188 (39%), Gaps = 13/188 (6%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSR--QLKKLPDLSQARNLENLLLKACSSLVETHSSIQYL 61
            +L    + +L  LKE++++++     K     S   NLE+L L +        + ++ L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 62  SKL----VTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLH 116
            ++    ++LD+ L   +N +     + I L +L L    +   + ++ I  L+ LE+  
Sbjct: 173 HQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 117 LKNCSKLLS--LPELPCNLFSVGVRRCTSLE-ALSSFSFLFSAMSPHNDQYFNLSDCLKL 173
           L          L +   +    G+   T  E  L+   +    +    +   N+S    L
Sbjct: 232 LVLGEFRNEGNLEKFDKSALE-GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS-SFSL 289

Query: 174 DQNELKGI 181
               ++ +
Sbjct: 290 VSVTIERV 297

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 4   TNLRFLIL-------------KNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKAC 48
           ++L  LIL               L +L+++    +  L  L +  +   + L+ L +   
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 49  S-SLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ----RLYLSGCSNLRRIP 103
                +       L+ L  LD+   K  +   + L  L  +      L LS    +  I 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQ 193

Query: 104 ESIINLSKLELLHLKNCSKLLSLPELPCNLFS 135
                  +L  L L+N    L++ +      +
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 16/191 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLD 68
            ++L +L  + L+ +  ++ L     S   +L+ L+    +     +  I +L  L  L+
Sbjct: 72  YQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 69  MRLCKNLN-RLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 127
           +      + +LP     L +L+ L LS           +  L ++ LL+L     L  + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 128 ELPCNLFSVGVRRCTSLEALS-SFSFLFSAMSP------HNDQYFNLSDCLKLDQNELKG 180
            +    F     +   L  L+   +F    +           +   L      ++  L+ 
Sbjct: 191 FIQPGAF-----KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 181 IAEDALQKIQQ 191
             + AL+ +  
Sbjct: 246 FDKSALEGLCN 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 6e-08
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 13/129 (10%)

Query: 9   LILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS--SLVETHSSIQYLSKL 64
           ++L    N      S+   +        S     E   L   +    V        +++ 
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQF 61

Query: 65  VTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLL 124
             L +    NL+ LP +L     +  L ++    L  +PE   +L  L+        +L 
Sbjct: 62  SELQLN-RLNLSSLPDNLPP--QITVLEITQN-ALISLPELPASLEYLDACDN----RLS 113

Query: 125 SLPELPCNL 133
           +LPELP +L
Sbjct: 114 TLPELPASL 122

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 4   TNLRFLILKN---------LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVET 54
             +  L +             +L+ +D   + +L  LP+L    +L++L +     L   
Sbjct: 80  PQITVLEITQNALISLPELPASLEYLDACDN-RLSTLPELPA--SLKHLDVDNNQ-LTML 135

Query: 55  HSSIQYLSKLVTLDMRLCKN-LNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLE 113
                 L  +         N L  LP       SL+ L +     L  +PE   +L  L+
Sbjct: 136 PELPALLEYI-----NADNNQLTMLPELPT---SLEVLSVRNN-QLTFLPELPESLEALD 186

Query: 114 LLHLKNCSKLLSLPELPCNLFS 135
           +    N   L SLP +P     
Sbjct: 187 VST--N--LLESLPAVPVRNHH 204

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 35/159 (22%)

Query: 4   TNLRFLILKN---------LVNLKEIDLSYSRQLKKLPDLSQARNLENL---------LL 45
            +L +L   +           +LK +D+  + QL  LP+L     LE +         L 
Sbjct: 100 ASLEYLDACDNRLSTLPELPASLKHLDVDNN-QLTMLPELPA--LLEYINADNNQLTMLP 156

Query: 46  KACSSLVE---THSSIQYL----SKLVTLDMRLCKNLNRLPSSLCELISLQR----LYLS 94
           +  +SL      ++ + +L      L  LD+     L  LP+        +         
Sbjct: 157 ELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCR 215

Query: 95  GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNL 133
               +  IPE+I++L     + L++   L S      + 
Sbjct: 216 EN-RITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 8   FLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTL 67
           F              + +  +  L +         L L    +L     ++    ++  L
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQL-NRLNLSSLPDNL--PPQITVL 85

Query: 68  DMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 127
           ++     L  LP       SL+ L       L  +PE   +L  L++ +    ++L  LP
Sbjct: 86  EITQNA-LISLPELPA---SLEYLDACDN-RLSTLPELPASLKHLDVDN----NQLTMLP 136

Query: 128 ELPCNL 133
           ELP  L
Sbjct: 137 ELPALL 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 29/147 (19%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
             +L  +  +    +  +  +  +    NL  L LK     +   + ++ L+K+  L+  
Sbjct: 37  QADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQ--ITDLAPLKNLTKITELE-- 91

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLPE 128
           L  N  +  S++  L S++ L L+    +  +   +  LS L++L+L     + +  L  
Sbjct: 92  LSGNPLKNVSAIAGLQSIKTLDLTST-QITDV-TPLAGLSNLQVLYLDLNQITNISPLAG 149

Query: 129 LPCNLFSVGVRRC--TSLEALSSFSFL 153
           L  NL  + +     + L  L++ S L
Sbjct: 150 LT-NLQYLSIGNAQVSDLTPLANLSKL 175

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           LKNL  + E++LS +  LK +  ++  ++++ L L   S+ +   + +  LS L  L   
Sbjct: 81  LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDL--TSTQITDVTPLAGLSNLQVLY-- 135

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLPE 128
           L  N     S L  L +LQ L +     +  +   + NLSKL  L   +   S +  L  
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNA-QVSDL-TPLANLSKLTTLKADDNKISDISPLAS 193

Query: 129 LPCNLFSVGVRRC--TSLEALSSFSFL 153
           LP NL  V ++    + +  L++ S L
Sbjct: 194 LP-NLIEVHLKNNQISDVSPLANTSNL 219

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 13/108 (12%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
           L  L NL+ + +  + Q+  L  L+    L  L      + +   S +  L  L+ +   
Sbjct: 147 LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKAD--DNKISDISPLASLPNLIEVH-- 201

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 118
           L  N     S L    +L  + L+          +I N       +L 
Sbjct: 202 LKNNQISDVSPLANTSNLFIVTLTNQ--------TITNQPVFYNNNLV 241

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 9   LILKNLVNLKEIDLSYSRQL--KKLPDLSQA-RNLENLLLKACSSLVETHSSIQYLSK-- 63
           LI K+  N K + LS         L  ++   RNL+ L L+       +   + +     
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183

Query: 64  --LVTLDMRLCKNLNRLPSSLCELI----SLQRLYLSGCSNLRRIPESIINLSKLELLHL 117
             LV+L++    +     S+L  L+    +L+ L L+    L ++   +    +LE L  
Sbjct: 184 TSLVSLNISCLASEVS-FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242

Query: 118 KNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF------NLSDCL 171
              +  +       +  SV +  C  L  LS F     A  P            NLS   
Sbjct: 243 GGYTAEVR--PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300

Query: 172 KLD 174
              
Sbjct: 301 VQS 303

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 26/168 (15%), Positives = 48/168 (28%), Gaps = 14/168 (8%)

Query: 10  ILKNLVNLKEIDLSYSR----QLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLV 65
           +      L  ++LSY+      L KL  L Q   L+ L +                  L 
Sbjct: 284 VYSVCSRLTTLNLSYATVQSYDLVKL--LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341

Query: 66  TLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHL-KNCSKLL 124
            L +   +     P+       L  +   GC  L  +      ++   L+ + +N   + 
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400

Query: 125 SLPELPCNLFSVGVRRCTSL-EALSSFSFLFSAMSPHNDQYFNLSDCL 171
                   L  +  +    L        F        + +  +LS  L
Sbjct: 401 RF-----RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 24/188 (12%)

Query: 10  ILKNLVNLKEIDLSY----SRQLKKLPDLSQARNLENLLLKAC--SSLVETHSSIQYLSK 63
             ++L +L+ +DLS        LK         +L+ L+L      S+ +T   +  L  
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 64  LVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL 123
           L +LD+      + +P S      ++ L LS    +R +   I     LE+L + N   L
Sbjct: 389 LTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSNN-NL 443

Query: 124 LSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE 183
            S       L  + + R   L+ L   S               +S       N+LK + +
Sbjct: 444 DSFSLFLPRLQELYISRN-KLKTLPDASLF------PVLLVMKISR------NQLKSVPD 490

Query: 184 DALQKIQQ 191
               ++  
Sbjct: 491 GIFDRLTS 498

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 11/137 (8%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYL 61
           T +    L+   NL+ + L  S ++  +         +LE+L L        + S    L
Sbjct: 39  TYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97

Query: 62  SKLVTLDMRLCKNLNRLPSSLC--ELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLK 118
           S L  L++        L  +     L +LQ L +        I       L+ L  L +K
Sbjct: 98  SSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 119 NCSKLLSLPELPCNLFS 135
                LSL         
Sbjct: 157 A----LSLRNYQSQSLK 169

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 14/198 (7%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD---LSQARNLENLLLKACSSLVE-THSSIQ 59
           ++L       L +LK ++L  +   + L          NL+ L +    +  E       
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 60  YLSKLVTLDMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 118
            L+ L  L+++   +L    S SL  +  +  L L    +   +      LS +  L L+
Sbjct: 146 GLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 119 NCSKLLSLPELPCNLFSVGVR------RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK 172
           + + L      P  +  V         R + L   S    L               DC  
Sbjct: 205 DTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 173 LDQNELKGIAEDALQKIQ 190
               +      D + ++ 
Sbjct: 264 NGLGDFNPSESDVVSELG 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 25/196 (12%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLL-KACSSLVETHSSIQYLS 62
           +++R+L L++  NL     S     +    + +     ++L  ++ + L++    I  LS
Sbjct: 196 SSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 63  KLVTLDMRLCKNLNRLPSSLC---------ELISLQRLYLSGCSNLRRIPESIINLSKLE 113
           ++   D  L   L     S           E ++++RL++        +      L K++
Sbjct: 255 EVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 114 LLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF-LFSAMSPHNDQYFNLSDCLK 172
            + ++N      +  +PC+          SLE L   S  L       N         L+
Sbjct: 314 RITVENS----KVFLVPCSFSQ----HLKSLEFL-DLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 173 ---LDQNELKGIAEDA 185
              L QN L+ + +  
Sbjct: 365 TLVLSQNHLRSMQKTG 380

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 16/175 (9%)

Query: 21  DLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP 79
           D   SR    +P  L+    +++L L         H  ++  + L  L ++  + +N + 
Sbjct: 11  DGR-SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIE 66

Query: 80  SSLCE-LISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKNCSKLLSLPELPCNLFSVG 137
                 L SL+ L LS   +L  +  S    LS L+ L+L       +L     +LF   
Sbjct: 67  GDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLG--VTSLFP-- 120

Query: 138 VRRCTSLEALS-SFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 191
               T+L+ L       FS +   +       + L++    L+     +L+ I+ 
Sbjct: 121 --NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC--SSLVETHSSIQYLSKLVTLD 68
           L +L  L+ + LS S     +     + +L +L L     S  V T +S+   S L  L+
Sbjct: 73  LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 69  MRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESII---NLSKLELLHLKNCS 121
           +           S   +L SL+ L LS  S         +      +L+ L +    
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 56  SSIQYLSKLVTLDMRLCKNLNRL----PSSLCELISLQRLYLSGCSNLR-RIPESIINLS 110
           SS+  LSKL  L + L    N L    P  L  + +L+ L L    +L   IP  + N +
Sbjct: 436 SSLGSLSKLRDLKLWL----NMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCT 490

Query: 111 KLELLHLKN 119
            L  + L N
Sbjct: 491 NLNWISLSN 499

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 10  ILKNLVNLKEIDLSY----SRQLKKLPDLSQARNLENLLLKACS---SLVETHSSIQYLS 62
               L +L+ +DLS        +           L++L +        +      +    
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-----DVSRCV 200

Query: 63  KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLR-RIPESIINLSKLELLHLKNCS 121
            L  LD+    N +     L +  +LQ L +SG   L      +I   ++L+LL++ +  
Sbjct: 201 NLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQ 258

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 36/142 (25%)

Query: 11  LKNLVNLKEIDLSY--------SRQLKKLPDLSQARN-----LENLLLKACSSLVETH-- 55
           +     LK +++S            LK L  LS A N     + + L  AC +L      
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 56  ---------SSIQYLSKLVTLDMRLCKNLNRL-----PSSLCELISLQRLYLSGCSNLR- 100
                          S L +L +    + N         +L ++  L+ L LS       
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLAL----SSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSG 357

Query: 101 RIPESIINLS-KLELLHLKNCS 121
            +PES+ NLS  L  L L + +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNN 379

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 25/143 (17%)

Query: 61  LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHL--- 117
           ++ +      L    + + SSL  L  L+ L+LS       +       + L  L L   
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110

Query: 118 ------------KNCSKLLSLPELPCNLFSV-----GVRRCTSLEALS-SFSFLFSAMSP 159
                        +CS L  L  +  N         G  +  SLE L  S + +  A   
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFL-NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 160 HNDQYFNLSD--CLKLDQNELKG 180
                    +   L +  N++ G
Sbjct: 170 GWVLSDGCGELKHLAISGNKISG 192

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 18/186 (9%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYL 61
           +++ F+ L N   L+ + L     +  +          L+ L  +  +    +   +  L
Sbjct: 118 SSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 62  SKLVTLDMRLCKN-LNRLPSSLCELISLQRLYLSGCSNLRRIPESIIN--LSKLELLHLK 118
            +   L + L  N +  +     +    Q L   G  NL  I + + N  +  L L   +
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 119 NCSKLLSLPELPCNLFSVGVRRCTSLEALS-SFSFLFSAMSPHNDQYFNLSD--CLKLDQ 175
           +    +   ++   +F        S+E+++    + F   +  ++ +   S    L L  
Sbjct: 237 D----MDDEDISPAVFEGLCE--MSVESINLQKHYFF---NISSNTFHCFSGLQELDLTA 287

Query: 176 NELKGI 181
             L  +
Sbjct: 288 THLSEL 293

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 3   RTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQA----RNLENLLLKACSSLVETHSSI 58
           R  L    L+NL NL+E+DLS+   ++     +       +L++L L     L     + 
Sbjct: 338 RLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 59  QYLSKLVTLDMRLCKNLNRL--PSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELL 115
           +   +L  LD+     L      S    L  L+ L LS    L    E +   L  L+ L
Sbjct: 397 KECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHL 454

Query: 116 HLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS 148
           +L+             N           LE L 
Sbjct: 455 NLQGNH-FPKGNIQKTNSLQ----TLGRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLL---LKACSSLVETHSSIQY 60
            +L+    K    L+ +DL+++ +LK     S  +NL  L    L      + +      
Sbjct: 389 LSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 61  LSKLVTLDM---RLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLH 116
           L  L  L++      K   +  +SL  L  L+ L LS C +L  I +    +L  +  + 
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVD 506

Query: 117 LKN 119
           L +
Sbjct: 507 LSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 40/186 (21%), Positives = 59/186 (31%), Gaps = 37/186 (19%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSSIQYLSKLVTL 67
           L  L  LK++ LS + + + L     S   +L +L +K  +  L      ++ L  L  L
Sbjct: 297 LVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 68  DMRLCK--NLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS 125
           D+        +     L  L  LQ L LS    L    E+     +LELL L        
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT----- 410

Query: 126 LPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDA 185
                         R    +A S F  L             L   L L  + L   +E  
Sbjct: 411 --------------RLKVKDAQSPFQNL-----------HLLKV-LNLSHSLLDISSEQL 444

Query: 186 LQKIQQ 191
              +  
Sbjct: 445 FDGLPA 450

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 9/135 (6%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYL 61
             ++      L+NL  +DL+   Q+  + +        L+ L+L A   +    +++   
Sbjct: 46  PTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104

Query: 62  SKLVTLDMRLCKNLNRL-PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120
             L  L       ++ +    L    +L+ LYL                 KL++L  +N 
Sbjct: 105 KALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 121 SKLLSLPELPCNLFS 135
               ++  L     S
Sbjct: 164 ----AIHYLSKEDMS 174

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 25/195 (12%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACS-SLVETHSSIQY 60
           ++++         LK +D   +  +  L   D+S  +   NL L      +         
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 61  LSKLVTLDMRLCKNLNRLPSSL--CELISLQRLYLSGCSNLRRIPESIINLSKLELLHLK 118
            +   +L+    +NL  +   L    + SL         +    P     L ++ +  + 
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI- 259

Query: 119 NCSKLLSLPELPCNLFSVGVRRCTSLEALS----SFSFLFSAMSPHNDQYFNLSD--CLK 172
           N  K      +  N F       + L+ L       S L S +         LS    L 
Sbjct: 260 NLQK-HYFFNISSNTFH----CFSGLQELDLTATHLSELPSGL-------VGLSTLKKLV 307

Query: 173 LDQNELKGIAEDALQ 187
           L  N+ + + + +  
Sbjct: 308 LSANKFENLCQISAS 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 18/178 (10%)

Query: 18  KEIDLSYSRQLKKLPDLSQARNLENLLLKAC--SSLVETHSSIQYLSKLVTLDMRLCKNL 75
           K  +      L ++P  +   + E L        ++   +++   L  L  LD+  C  +
Sbjct: 15  KTYNCEN-LGLNEIPG-TLPNSTECLEFSFNVLPTI--QNTTFSRLINLTFLDLTRC-QI 69

Query: 76  NRLPS-SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLF 134
             +   +      L  L L+    +     ++     L+ L          +  +     
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT----GISSIDFIPL 125

Query: 135 SVGVRRCTSLEALS-SFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ 191
                   +LE+L    + + S   P       L   L    N +  ++++ +  +QQ
Sbjct: 126 H----NQKTLESLYLGSNHISSIKLPKGFPTEKLKV-LDFQNNAIHYLSKEDMSSLQQ 178

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 1   MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSS 57
               N+  +        K I L+ + ++  L D        ++ L LK      V     
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 58  IQYLSKLVTLDMRLCKN-LNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLH 116
                 L  L+  L  N +  +   +     L+ L LS    L  +     + + +  + 
Sbjct: 165 AASSDTLEHLN--LQYNFIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWIS 220

Query: 117 LKNCSKLLSLPE 128
           L+N  KL+ + +
Sbjct: 221 LRNN-KLVLIEK 231

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 23/148 (15%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSS-LVETHSSIQY 60
                 + ++  N+KE+DLS +  L ++    L+    LE L L   SS ++     ++ 
Sbjct: 23  KQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNL---SSNVLYETLDLES 78

Query: 61  LSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC 120
           LS L TLD+    N N +   L    S++ L+ +   N+ R+  S       + ++L N 
Sbjct: 79  LSTLRTLDL----NNNYV-QELLVGPSIETLHAANN-NISRVSCSR--GQGKKNIYLANN 130

Query: 121 SKLLSLPELPCNLFSVGVRRCTSLEALS 148
                +  L            + ++ L 
Sbjct: 131 ----KITMLRDLDEG----CRSRVQYLD 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLD 68
                 L  +D+ ++  + KL      +   L+ L L+       +  +  + + L  L 
Sbjct: 45  FTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 69  MRLCKNLNRL-PSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKNCSKLLSL 126
           +    ++ ++  +   +  +L  L LS    L          L  L+ L L N      +
Sbjct: 104 LMSN-SIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNN----KI 157

Query: 127 PELPCNLFSVGVRRCTSLEALS 148
             L      +     +SL+ L 
Sbjct: 158 QALKSEELDIF--ANSSLKKLE 177

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 46/214 (21%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTL 67
           + + L  LK ++L ++ +L +L D   +   NL  L L + S     ++       L+TL
Sbjct: 68  LCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 68  DMRLCKNLNRL----PSSLCELISLQRLYLSGC---------------SNLRR------- 101
           D+    + N L      +  +L +LQ L LS                 S+L++       
Sbjct: 127 DL----SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 102 ----IPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM 157
                P     + +L  L L N     SL E  C   +      TS+  LS  +   S  
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA-----NTSIRNLSLSNSQLSTT 237

Query: 158 SP---HNDQYFNLSDCLKLDQNELKGIAEDALQK 188
           S       ++ NL+  L L  N L  +  D+   
Sbjct: 238 SNTTFLGLKWTNLTM-LDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 10  ILKNLVNLKEIDLSY----SRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYL--SK 63
               +  L  + L+         +KL       ++ NL L        ++++   L  + 
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 64  LVTLDMRLCKNLNRL-PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSK 122
           L  LD+    NLN +   S   L  L+  +L   +       S+  L  +  L+LK    
Sbjct: 250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 123 LL-----SLPELPCNLFSVGVRRCTSLEALS 148
                  SLP++    F         LE L+
Sbjct: 309 KQSISLASLPKIDDFSFQ----WLKCLEHLN 335

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 12/145 (8%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLK----ACSSLVETHS-SIQYLSKL 64
           +   L+NLK + LS S    +        +L +  L       + + +  S +  +L  L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 65  VTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL 123
             LD+ L +    L       L ++  +YLS    L+    S   +  L+ L L+    L
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-AL 466

Query: 124 LSLPELPCNLFSVGVRRCTSLEALS 148
            ++   P + F        +L  L 
Sbjct: 467 KNVDSSP-SPFQ----PLRNLTILD 486

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 30/199 (15%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLL----KACSSLVETHSS 57
             +     + L  L+ +++  +  +  +     +   NL+ L L     +  +L      
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 58  IQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLH 116
               S L  L++   K       +   L  L+ L L      + +       L  +  ++
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 117 LKNCSKLLSLPELPCNLFSVGVRRCTSLEALS----SFSFLFSAMSP----HNDQYFNLS 168
           L    K L L     N F+       SL+ L     +   + S+ SP     N    +LS
Sbjct: 437 LSYN-KYLQLTR---NSFA----LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 169 DCLKLDQNELKGIAEDALQ 187
           +      N +  I +D L+
Sbjct: 489 N------NNIANINDDMLE 501

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 25/204 (12%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSR----------QLKKLPDLSQARNLENLLLKACSSLVE 53
             +       L  L+   L Y+            L  +  L+  R+     +   S    
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 54  THSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG-CSNLRRIPESI---INL 109
              S Q+L  L  L+M          +    LI+L+ L LS   ++LR +       +  
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 110 SKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS-SFSFLFSAMSPHNDQYF-NL 167
           S L +L+L    K+  +     + FS        LE L    + +   ++    +   N+
Sbjct: 381 SPLHILNLTKN-KISKIES---DAFS----WLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 168 SDCLKLDQNELKGIAEDALQKIQQ 191
            + + L  N+   +  ++   +  
Sbjct: 433 FE-IYLSYNKYLQLTRNSFALVPS 455

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 15/122 (12%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENL--------LLKACSSLVETHSSIQ 59
             + L NL  +DLS +  +  + D  L     LE L         L   ++       ++
Sbjct: 475 PFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 60  YLSKLVTLDMRLCKNLNRL-PSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHL 117
            LS L  L++      + +      +L  L+ + L    NL  +P S+  N   L+ L+L
Sbjct: 534 GLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNL 591

Query: 118 KN 119
           + 
Sbjct: 592 QK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 26/136 (19%)

Query: 61  LSKLVTLDMRLCKNLNRL-PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119
            + +  L++     L RL  ++      L  L +   +  +  PE    L  L++L+L++
Sbjct: 24  PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 120 CSKLLSLPELPCNLFSVGVRRCTSLEAL--------SSFSFLFSAMSPHNDQYFNLSDCL 171
                 L +L    F+     CT+L  L           +  F           NL   L
Sbjct: 83  N----ELSQLSDKTFA----FCTNLTELHLMSNSIQKIKNNPFVKQK-------NLIT-L 126

Query: 172 KLDQNELKGIAEDALQ 187
            L  N L         
Sbjct: 127 DLSHNGLSSTKLGTQV 142

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
              L N  + +L   + +  L    +   ++N      +S +++ + +Q+ + L  L   
Sbjct: 15  DPGLANAVKQNLGK-QSVTDLVSQKELSGVQNFNG--DNSNIQSLAGMQFFTNLKELH-- 69

Query: 71  LCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLPE 128
           L  N     S L +L  L+ L ++    L+ +  + I  + L  L L N       SL  
Sbjct: 70  LSHNQISDLSPLKDLTKLEELSVNRN-RLKNL--NGIPSACLSRLFLDNNELRDTDSLIH 126

Query: 129 LPCNLFSVGVRRC--TSLEALSSFSFL 153
           L  NL  + +R     S+  L   S L
Sbjct: 127 LK-NLEILSIRNNKLKSIVMLGFLSKL 152

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR 70
            K L  ++  +   S  ++ L  +    NL+ L L      +   S ++ L+KL  L + 
Sbjct: 37  QKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQ--ISDLSPLKDLTKLEELSV- 92

Query: 71  LCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC--SKLLSLP 127
              N NRL + +      L RL+L     LR   +S+I+L  LE+L ++N     ++ L 
Sbjct: 93  ---NRNRLKNLNGIPSACLSRLFLDNN-ELRDT-DSLIHLKNLEILSIRNNKLKSIVMLG 147

Query: 128 ELPCNLFSVGVRRC--TSLEALSSFSFL 153
            L   L  + +     T+   L+    +
Sbjct: 148 FLS-KLEVLDLHGNEITNTGGLTRLKKV 174

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 14/187 (7%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 69
           I +N  +L  + +     L+ +     A NLE     + +  +        L     L  
Sbjct: 215 IARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274

Query: 70  RLCKNL--NRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKNC---SKL 123
                +  N +P        +++L L           ++I     LE+L  +N      L
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL 334

Query: 124 LSLPELPCNLFSVGVRRCTSLEALSSFSFLFS-------AMSPHNDQYFNLSDCLKLDQN 176
             L +    L  + + R    + +     L S       A      +Y  +     +   
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNE 393

Query: 177 ELKGIAE 183
            L+ I  
Sbjct: 394 SLESIGT 400

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 20/157 (12%)

Query: 10  ILKNLVNLKEIDLSYSRQL--KKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTL 67
           +      ++++DL Y+          + +  NLE L  +            QY  +L  L
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347

Query: 68  DMRLCKNLNRLPSSLCEL------------ISLQRLYLSGC----SNLRRIPESIINLSK 111
            +    +   +      +              L+ + +        +L  I   + NL  
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 112 LELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS 148
             L+ L    ++  LP    N     +  C  L   +
Sbjct: 408 FRLVLLDREERITDLPL--DNGVRSLLIGCKKLRRFA 442

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 27/188 (14%), Positives = 57/188 (30%), Gaps = 12/188 (6%)

Query: 6   LRFLILKNLVNLKEIDLSYSRQL--KKLPDLSQA-RNLENLLLKACSSLVETHSSIQYLS 62
           L  L      +L+ + L          L  +    R ++ LL++  S   +    +  L+
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 63  K----LVTLDMRLCKNLNRLPSSLCELI----SLQRLYLSGCSNLRRIPESIINLSKLEL 114
           +    L  L+  + +     P  L  +     SL  + +     L  +       + LE 
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEE 247

Query: 115 LHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLD 174
               + ++ + +PE   NL          L  +               +  +L   L   
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

Query: 175 QNELKGIA 182
           ++    I 
Sbjct: 308 EDHCTLIQ 315

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 25/190 (13%), Positives = 54/190 (28%), Gaps = 37/190 (19%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD-------LSQARNLENLLLKACSSLVETHSSIQYLSK 63
           LKNL + + + L    ++  LP        L   + L           + T   + Y+  
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL-TDLGLSYIG- 459

Query: 64  LVTLDMRLCKNLNRLPSSLCEL--ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 121
                 +   N+  +           L      GC NL++             L ++ C 
Sbjct: 460 ------QYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQK-------------LEMRGCC 499

Query: 122 ----KLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNE 177
                + +      +L  + V+   +   ++    +  A    N +        +++Q  
Sbjct: 500 FSERAIAAAVTKLPSLRYLWVQGYRAS--MTGQDLMQMARPYWNIELIPSRRVPEVNQQG 557

Query: 178 LKGIAEDALQ 187
                E    
Sbjct: 558 EIREMEHPAH 567

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 29/194 (14%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSSIQY 60
             L   +L +   ++ ++L+   Q++++     + A  ++ L +   +   +  H   Q 
Sbjct: 58  RKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQN 115

Query: 61  LSKLVTLDMRLCKN-LNRLPSSL-CELISLQRLYLSGCSNLRRIPESI-INLSKLELLHL 117
           +  L  L   L +N L+ LP  +      L  L +S   NL RI +      + L+ L L
Sbjct: 116 VPLLTVLV--LERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQL 172

Query: 118 KNCSKLLSLP-ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN 176
            +  +L  +   L  +LF   V     L  L+    +                 L    N
Sbjct: 173 SSN-RLTHVDLSLIPSLFHANVSYN-LLSTLAIPIAVEE---------------LDASHN 215

Query: 177 ELKGIAEDALQKIQ 190
            +  +      ++ 
Sbjct: 216 SINVVRGPVNVELT 229

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 17/142 (11%)

Query: 4   TNLRFLILKN----------LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVE 53
             +  L   +           V L  + L ++  L     L     L  + L        
Sbjct: 205 IAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKI 263

Query: 54  THSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLE 113
            +     + +L  L +     L  L      + +L+ L LS   +L  +  +     +LE
Sbjct: 264 MYHPFVKMQRLERLYIS-NNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 321

Query: 114 LLHLKNCSKLLSLPELPCNLFS 135
            L+L +     S+  L  +   
Sbjct: 322 NLYLDHN----SIVTLKLSTHH 339

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 30/205 (14%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSI-QY 60
             +          ++++ + ++  ++ LP         L  L+L+    L      I   
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHN 139

Query: 61  LSKLVTLDMRLCKNLNRL----PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLH 116
             KL TL M    + N L      +     SLQ L LS    L  +  S   +  L   +
Sbjct: 140 TPKLTTLSM----SNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLS--LIPSLFHAN 192

Query: 117 LKNCSKLLSLPELP---------CNLFSVGVRRCTSLEALS-SFSFLFSAMSPHNDQYFN 166
           +     L +L              ++  V       L  L    + L    +     Y  
Sbjct: 193 VSYN-LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPG 249

Query: 167 LSDCLKLDQNELKGIAEDALQKIQQ 191
           L + + L  NEL+ I      K+Q+
Sbjct: 250 LVE-VDLSYNELEKIMYHPFVKMQR 273

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 47/176 (26%)

Query: 4   TNLRFLILKN----------LVNLKEIDLSYSRQLKKLPDLSQARNLENLLL-------- 45
           T+L+ L L +          + +L   ++SY+  L  L        +E L          
Sbjct: 165 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLSTLAIPI---AVEELDASHNSINVV 220

Query: 46  --KACSSLVE---------THSSIQYLSKLVTLDMRLCKN-LNRLP-SSLCELISLQRLY 92
                  L             + +     LV +D  L  N L ++      ++  L+RLY
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD--LSYNELEKIMYHPFVKMQRLERLY 278

Query: 93  LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS 148
           +S  + L  +      +  L++L L +   LL +     N           LE L 
Sbjct: 279 ISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVER---NQPQ-----FDRLENLY 324

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 13  NLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSSIQYLSKLVTLDM 69
           NL  +  I++  +R L  +    L +   L+ L +      +    + +        L++
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 70  RLCKNLNRLPSSLCELIS--LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 127
                +  +P +  + +      L L        +     N +KL+ ++L     L  + 
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 128 E 128
           +
Sbjct: 197 K 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 12/132 (9%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSI-QYLSKLVTL 67
             NL N+  I +S    L++L          + ++ ++   +L        + L  L  L
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110

Query: 68  DMRLCKNLNRLP--SSLCELISLQRLYLSGCSNLRRIPE-SIINLSK-LELLHLKNCSKL 123
            +     L   P  + +        L ++    +  IP  +   L      L L N    
Sbjct: 111 GIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN--- 166

Query: 124 LSLPELPCNLFS 135
                +    F+
Sbjct: 167 -GFTSVQGYAFN 177

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 29/194 (14%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSSIQY 60
             L   +L +   ++ ++L+   Q++++     + A  ++ L +   +   +  H   Q 
Sbjct: 64  RKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQN 121

Query: 61  LSKLVTLDMRLCKN-LNRLPSSL-CELISLQRLYLSGCSNLRRIPESII-NLSKLELLHL 117
           +  L  L   L +N L+ LP  +      L  L +S   NL RI +      + L+ L L
Sbjct: 122 VPLLTVLV--LERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQL 178

Query: 118 KNCSKLLSLP-ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN 176
            +  +L  +   L  +LF   V     L  L+    +                 L    N
Sbjct: 179 SSN-RLTHVDLSLIPSLFHANVSYN-LLSTLAIPIAVEE---------------LDASHN 221

Query: 177 ELKGIAEDALQKIQ 190
            +  +      ++ 
Sbjct: 222 SINVVRGPVNVELT 235

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 9/136 (6%)

Query: 1   MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQY 60
               ++  +     V L  + L ++  L     L     L  + L         +     
Sbjct: 218 ASHNSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 61  LSKLVTLDMRLCKN-LNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN 119
           + +L  L   +  N L  L      + +L+ L LS   +L  +  +     +LE L+L +
Sbjct: 277 MQRLERLY--ISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 333

Query: 120 CSKLLSLPELPCNLFS 135
                S+  L  +   
Sbjct: 334 N----SIVTLKLSTHH 345

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSI-QY 60
             +          ++++ + ++  ++ LP         L  L+L+    L      I   
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHN 145

Query: 61  LSKLVTLDMRLCKNLNRL----PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLH 116
             KL TL M    + N L      +     SLQ L LS    L  +  S   +  L   +
Sbjct: 146 TPKLTTLSM----SNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLS--LIPSLFHAN 198

Query: 117 LKNCSKLLSLPELP---------CNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNL 167
           +     L +L              ++  V       L  L          +     Y  L
Sbjct: 199 VSYN-LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK-LQHNNLTDTAWLLNYPGL 256

Query: 168 SDCLKLDQNELKGIAEDALQKIQQ 191
            + + L  NEL+ I      K+Q+
Sbjct: 257 VE-VDLSYNELEKIMYHPFVKMQR 279

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 36/192 (18%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYL 61
             L+     N   L+ +DLS   +++ + D       +L NL+L        +  S   L
Sbjct: 45  KILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103

Query: 62  SKLVTLDMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRI--PESIINLSKLELLHLK 118
           + L  L       L  L S  + +LI+L++L ++    +     P    NL+ L  + L 
Sbjct: 104 TSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLS 161

Query: 119 NCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNEL 178
                                    ++ ++     F   +P  +   ++S       N +
Sbjct: 162 YN----------------------YIQTITVNDLQFLRENPQVNLSLDMSL------NPI 193

Query: 179 KGIAEDALQKIQ 190
             I + A Q I+
Sbjct: 194 DFIQDQAFQGIK 205

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 32/204 (15%)

Query: 1   MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLK--ACSSLVETHSSI 58
           + R  L+     +L  LK + L+ ++            +L  L L   A S       S 
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNK-GSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 59  QYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII--NLSKLELLH 116
              + L  LD+        + ++   L  LQ L     S L+R+ E     +L KL  L 
Sbjct: 373 LGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLD 430

Query: 117 LKNCSKLLSLPELPCNLFSVGVRRCTSLEAL---------SSFSFLFSAMSPHNDQYFNL 167
           +       +       +F       TSL  L         ++ S +F+  +       NL
Sbjct: 431 ISYT----NTKIDFDGIFL----GLTSLNTLKMAGNSFKDNTLSNVFANTT-------NL 475

Query: 168 SDCLKLDQNELKGIAEDALQKIQQ 191
           +  L L + +L+ I+      + +
Sbjct: 476 TF-LDLSKCQLEQISWGVFDTLHR 498

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 12/191 (6%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSR--QLKKLPDLSQARNLENLLLKAC--SSLVETHSS-- 57
            +L    +  L+ LK+++++++     K     S   NL ++ L      ++        
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 58  IQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLH 116
            +     ++LDM L   ++ +     + I L  L L G  N   I ++ + NL+ L +  
Sbjct: 177 RENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 117 LKNC--SKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLD 174
           L         +L     ++   G+   T  E   +++  FS          N+S  + L 
Sbjct: 236 LILGEFKDERNLEIFEPSIME-GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS-AMSLA 293

Query: 175 QNELKGIAEDA 185
              +K + +  
Sbjct: 294 GVSIKYLEDVP 304

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 12/117 (10%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTL 67
           I   L +L  + ++ +           +   NL  L L  C     +      L +L  L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 68  DMRLCKNLNRL----PSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKN 119
           +M    + N L     S   +L SL  L  S    +      +      L   +L N
Sbjct: 503 NM----SHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 30/174 (17%)

Query: 5   NLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKL 64
            L     K+  NL+  + S    L  +        ++   L   +   +       L+ +
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDV-------TIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 65  VTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLL 124
             +   L     +    + +    Q L +  C  L++ P    +L  L+ L L      +
Sbjct: 288 SAMS--LAGVSIKYLEDVPKHFKWQSLSIIRC-QLKQFPTL--DLPFLKSLTLTMNKGSI 342

Query: 125 SLPELPCNLFSVGVRRCTSLEALS----SFSFL----FSAMSPHNDQYFNLSDC 170
           S  ++             SL  L     + SF     +S +  ++ ++ +LS  
Sbjct: 343 SFKKVA----------LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 25/158 (15%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC--SSLVETHSSIQYL 61
                +  + L  L  +D   S  +  +  + +   L  L+  +   ++L      +   
Sbjct: 31  QATDTISEEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNITTL-----DLSQN 84

Query: 62  SKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC- 120
           + L  L     K L  L   +  L  L  L       L ++  S      L  L+     
Sbjct: 85  TNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN-KLTKLDVS--QNPLLTYLNCARNT 138

Query: 121 ------SKLLSLPELPCN----LFSVGVRRCTSLEALS 148
                 S    L EL C+    +  + V   T L  L 
Sbjct: 139 LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 32/174 (18%), Positives = 54/174 (31%), Gaps = 30/174 (17%)

Query: 1   MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC--SSL-VETHSS 57
             R  L  + + +   L E+D   ++++    D++    L  L       + L V  +  
Sbjct: 134 CARNTLTEIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKITELDVSQNKL 192

Query: 58  IQYLS----KLVTLDMRLCKNL-------NRLPS-SLCELISLQRLYLSGCSNLRRIPES 105
           +  L+     +  LD+     L       N+L    +  L  L     S    L  +  S
Sbjct: 193 LNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVN-PLTELDVS 251

Query: 106 IINLSKLELLHLKNC-------SKLLSLPELPCN----LFSVGVRRCTSLEALS 148
              LSKL  LH           +    L          +  + V   T L  L 
Sbjct: 252 --TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 19/127 (14%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLS- 62
           T L +   +    +KE+D++++ QL  L D   A  +  L L     LV       YL+ 
Sbjct: 275 TQLIYFQAEGCRKIKELDVTHNTQLYLL-DCQAA-GITELDLSQNPKLVYL-----YLNN 327

Query: 63  -KLVTLDMRLCKNLNRLP---------SSLCELISLQRLYLSGCSNLRRIPESIINLSKL 112
            +L  LD+     L  L          SS+ ++ +L   + +       +P+  +  + L
Sbjct: 328 TELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAE-GQTITMPKETLTNNSL 386

Query: 113 ELLHLKN 119
            +    +
Sbjct: 387 TIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 39  NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSN 98
           N  + +  A         S + L+ L +LD     ++  +   + +L  L +L  +   N
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCH-NSSITDMT-GIEKLTGLTKLICTSN-N 75

Query: 99  LRRIPESIINLSKLELLHLKNC-------SKLLSLPELPCN---LFSVGVRRCTSLEALS 148
           +  +  S    + L  L   +        + L  L  L C+   L  + V +   L  L+
Sbjct: 76  ITTLDLS--QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN 133

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSI-QYLSKLVTL 67
                +L++I++S +  L+ +     S    L  + ++  ++L+  +    Q L  L  L
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 68  DMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIPE-SIINLS-KLELLHLKNCSKLL 124
            +     +  LP       +    L +    N+  I   S + LS +  +L L       
Sbjct: 110 LISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN---- 164

Query: 125 SLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAED 184
            + E+  + F          E   S +     +        +    L + +  +  +   
Sbjct: 165 GIQEIHNSAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 185 ALQKIQQ 191
            L+ +++
Sbjct: 221 GLENLKK 227

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 14/162 (8%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACS----SLVETHSSIQYLSKLV 65
             +NL NL+ + +S +  +K LPD+ +  +L+ +LL          +E +S +    + V
Sbjct: 99  AFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 66  TLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKNCSKLL 124
            L +     +  + +S      L  L LS  +NL  +P  +    S   +L +    ++ 
Sbjct: 158 ILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIH 215

Query: 125 SLPE-----LPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN 161
           SLP      L   L +        L  L     L  A   + 
Sbjct: 216 SLPSYGLENLK-KLRARSTYNLKKLPTLEKLVALMEASLTYP 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 69/405 (17%), Positives = 125/405 (30%), Gaps = 123/405 (30%)

Query: 27  QLKKLPDLSQARNLENLLL---KAC--SSLV-ETHSSIQYLSKLVT----LDMRLCKNLN 76
           +L++   L + R  +N+L+        + +  +   S +   K+      L+++ C +  
Sbjct: 139 KLRQA--LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-- 194

Query: 77  RLPSSLCELISLQRLYL-------SGCSNLRRIPESIINLSKLELLHL------KNCSKL 123
             P ++  L  LQ+L         S   +   I   I +  + EL  L      +NC  L
Sbjct: 195 --PETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENC--L 247

Query: 124 LSL-----PELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP---------HNDQYFN--- 166
           L L      +   N F++    C  L   + F  +   +S          H+        
Sbjct: 248 LVLLNVQNAKA-WNAFNLS---CKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 167 ----LSDCLKLDQNEL------------KGIAEDALQKIQQKATSW--W-----MKLK-- 201
               L   L     +L              IAE     I+    +W  W      KL   
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE----SIRDGLATWDNWKHVNCDKLTTI 358

Query: 202 --------EETDYK--YKPSCGGIYFP-GSEIPK------WFRFSSMGSSIEFKPQSDWI 244
                   E  +Y+  +      + FP  + IP       W         I+       +
Sbjct: 359 IESSLNVLEPAEYRKMFD-RLS-V-FPPSAHIPTILLSLIW------FDVIKSDVMV--V 407

Query: 245 NNEYLGIAFCAVLRCRIRFKIPSHDWYVRTIDYVESD---H-LFMGYYFFHGDKGDSRQD 300
            N+     +  V +      I     Y+     +E++   H   + +Y     K     D
Sbjct: 408 VNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP--KTFDSDD 463

Query: 301 FEKALFKIYFYNHTGRAMRCCGV--KKCGIRLLTAGDDFLGINLR 343
                   YFY+H G  ++      +    R++     FL   +R
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 19/197 (9%)

Query: 1   MERTNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQA--RNLENLLLKACSSLVET-HSS 57
           +   NL   +   L++   I     R     P         ++++ L      V T H  
Sbjct: 54  LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113

Query: 58  IQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII--NLSKLELL 115
           +   SKL  L +   +  + + ++L +  +L RL LSGCS         +  + S+L+ L
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173

Query: 116 HLKNCSKL------LSLPELPCNLFSVGVRRCTSL---EALSSFSFLFSAMSPHNDQYFN 166
           +L  C         +++  +   +  + +           LS+       +      + +
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL-----VHLD 228

Query: 167 LSDCLKLDQNELKGIAE 183
           LSD + L  +  +   +
Sbjct: 229 LSDSVMLKNDCFQEFFQ 245

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 23/132 (17%)

Query: 73  KNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSK--------LL 124
           K+ N LP+   +   +Q +  +    +    + +  L  +E + L  C          L 
Sbjct: 48  KDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107

Query: 125 SLPELPCNLFSVGVRRCT-----SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK 179
            L  L  ++  + +  C       + AL  F  L         +Y  LSD   + + E  
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL---------KYLFLSDLPGVKEKEKI 158

Query: 180 GIA-EDALQKIQ 190
             A + +L  ++
Sbjct: 159 VQAFKTSLPSLE 170

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 26  RQLKKLPDLS-QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKN-----LNRLP 79
           +    LP        ++ +       +      ++ L  +  + +  C       L RL 
Sbjct: 48  KDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107

Query: 80  SSLCELISLQRLYLSGCSNLR-RIPESIINLSKLELLHLKNCSKL 123
                  S+  + +  C N+  +   ++ +   L+ L L +   +
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 42/190 (22%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKAC--SSLVETHSSIQ 59
             +       L  L+++DLS + QL+ +          L  L L  C    L       +
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGLFR 126

Query: 60  YLSKLVTLDMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIPESI-INLSKLELLHL 117
            L+ L  L ++    L  LP  +  +L +L  L+L G + +  +PE     L  L+ L L
Sbjct: 127 GLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLL 184

Query: 118 KNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNE 177
                   +  +  + F         L  L                         L  N 
Sbjct: 185 HQNR----VAHVHPHAFR----DLGRLMTLY------------------------LFANN 212

Query: 178 LKGIAEDALQ 187
           L  +  +AL 
Sbjct: 213 LSALPTEALA 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 40/193 (20%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSI-QY 60
           +++     +   NL  + L  +  L ++     +    LE L L   + L     +    
Sbjct: 45  SHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 61  LSKLVTLDMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIPESI-INLSKLELLHLK 118
           L +L TL +  C  L  L       L +LQ LYL     L+ +P+    +L  L  L L 
Sbjct: 104 LGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLH 161

Query: 119 NCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNEL 178
             +++ S+PE     F    R   SL+ L                         L QN +
Sbjct: 162 G-NRISSVPE---RAF----RGLHSLDRLL------------------------LHQNRV 189

Query: 179 KGIAEDALQKIQQ 191
             +   A + + +
Sbjct: 190 AHVHPHAFRDLGR 202

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHS-SIQYLSKLVT 66
           + + L   + + LS++  ++ +          L+ L L +  + +     + + L  L  
Sbjct: 19  VPQVLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77

Query: 67  LDMRLCKNLNRLPSSLCELISLQRLYLSGC--SNLRRIPESIINLSKLELLHLKNCSKLL 124
           LD+   K     P +   L  L  L L  C  S+         NL  L  L L    ++ 
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIR 136

Query: 125 SLPELPCNLFSVGVRRCTSLEALS 148
           SL       F     +  SL+++ 
Sbjct: 137 SLY--LHPSFG----KLNSLKSID 154

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 30/165 (18%), Positives = 47/165 (28%), Gaps = 27/165 (16%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLL--------KACSSLVE 53
             L       L  +  IDL  +  +  + D        L+ L L            S+ +
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 54  THSSIQYLSKLVTLDMRL------CKNLNRLP--SSLCELISLQRLYLSGCSNLRRIPES 105
              S   L  L  +++           L  L     L  +  LQ L L+           
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGD 444

Query: 106 II--NLSKLELLHLKNCS-KLLSLPELPCNLFSVGVRRCTSLEAL 147
                   LE L L     +L    EL  ++F       + L+ L
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVF----EGLSHLQVL 485

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 8e-06
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKL-------PDLSQARNLENLLLKACSSLVETHSSIQYLS 62
            L+    LK +D   +  L  L         + +    +  +L      +     ++ L 
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463

Query: 63  KLVTLDMRLCKN-LNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCS 121
            +  LD  L  N L  LP +L  L  L+ L  S    L  +   + NL +L+ L L N  
Sbjct: 464 LVTHLD--LSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNN- 518

Query: 122 KLLSLPELPCNLFSVGVRRCTSLEALS 148
           +L     +        +  C  L  L+
Sbjct: 519 RLQQSAAIQP------LVSCPRLVLLN 539

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 69
           L+ L+ +  +DLS++ +L+ LP  L+  R LE L        +E    +  L +L  L  
Sbjct: 459 LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN--ALENVDGVANLPRLQELL- 514

Query: 70  RLCKN-LNRLPS--SLCELISLQRLYLSG--CSNLRRIPESIIN-LSKLELL 115
            LC N L +  +   L     L  L L G        I E +   L  +  +
Sbjct: 515 -LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 36/144 (25%), Positives = 52/144 (36%), Gaps = 46/144 (31%)

Query: 4   TNLRFLIL-------------KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSS 50
           TNL  L+L               + NL+ +DLS +  L  L +                 
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDE----------------- 105

Query: 51  LVETHSSIQYLSKLVTLDMRLCKN-LNRLPS-SLCELISLQRLYLSGCSNLRRIPESII- 107
                     L  L  L   L  N +  +   +  ++  LQ+LYLS    + R P  +I 
Sbjct: 106 -----FLFSDLQALEVLL--LYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIK 157

Query: 108 ---NLSKLELLHLKNCSKLLSLPE 128
               L KL LL L + +KL  LP 
Sbjct: 158 DGNKLPKLMLLDLSS-NKLKKLPL 180

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 21/207 (10%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKAC--SSLVETHSSIQ 59
           T +    L+  VNL+ + L+ +  +  + +   S   +LE+L L     S+L  + S  +
Sbjct: 65  TYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNL--SSSWFK 121

Query: 60  YLSKLVTLDMRLCKN-LNRLP--SSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELL 115
            LS L  L+  L  N    L   S    L  LQ L +       +I       L+ LE L
Sbjct: 122 PLSSLTFLN--LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 116 HLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQ 175
            +        L                ++  L         +        +  +CL+L  
Sbjct: 180 EIDAS----DLQSYEPKSLK----SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 176 NELKGIAEDALQKIQQKATSWWMKLKE 202
            +L       L   +  +       + 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRN 258

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/181 (13%), Positives = 54/181 (29%), Gaps = 29/181 (16%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDM 69
           +  +L  L+ + +       K+                             L+ L  L++
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQR----------------------KDFAGLTFLEELEI 181

Query: 70  RLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLK-NCSKLLSL 126
               +L      SL  + ++  L L        + E  +   S +E L L+         
Sbjct: 182 DAS-DLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 127 PELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDAL 186
            EL     +  + +  +   +         +    +Q   L + L+  +N+LK + +   
Sbjct: 240 SELSTGETN-SLIKKFTFRNVKITDESLFQVMKLLNQISGLLE-LEFSRNQLKSVPDGIF 297

Query: 187 Q 187
            
Sbjct: 298 D 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 23/114 (20%)

Query: 56  SSIQYLSKLVTLDMRLCKNLN---RLPSSLCELISLQRLYLSGCSNLR-RIPESIINLSK 111
            +     ++  LD+    NL     +PSSL  L  L  LY+ G +NL   IP +I  L++
Sbjct: 44  DTDTQTYRVNNLDLS-GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 112 LELLHLK-------------NCSKLLSLPELPCNLFS----VGVRRCTSLEALS 148
           L  L++                  L++L +   N  S      +    +L  ++
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTL-DFSYNALSGTLPPSISSLPNLVGIT 155

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 34/111 (30%)

Query: 13  NLVNLKEIDLSYSRQLK-KLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRL 71
           NL  L  + +     L   +P                        +I  L++L  L +  
Sbjct: 74  NLPYLNFLYIGGINNLVGPIP-----------------------PAIAKLTQLHYLYI-- 108

Query: 72  CKNLNRL----PSSLCELISLQRLYLSGCSNLR-RIPESIINLSKLELLHL 117
                 +    P  L ++ +L  L  S    L   +P SI +L  L  +  
Sbjct: 109 --THTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITF 156

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 64/205 (31%)

Query: 4   TNLRFLIL-------------KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKAC-- 48
            NL  LIL               LV L+ + LS + QLK+LP+    + L+ L +     
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE-KMPKTLQELRVHENEI 133

Query: 49  SSLVETHSSIQYLSKLVTLDMRLCKNLNRL------PSSLCELISLQRLYLSGCSNLRRI 102
           + +    S    L++++ +++      N L        +   +  L  + ++   N+  I
Sbjct: 134 TKV--RKSVFNGLNQMIVVEL----GTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTI 186

Query: 103 PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND 162
           P+ +     L  LHL        + ++             +L  L               
Sbjct: 187 PQGL--PPSLTELHLDGNK----ITKVDAASLK----GLNNLAKLG-------------- 222

Query: 163 QYFNLSDCLKLDQNELKGIAEDALQ 187
                     L  N +  +   +L 
Sbjct: 223 ----------LSFNSISAVDNGSLA 237

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 26/137 (18%)

Query: 4   TNLRFLILKN----------LVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-S 50
             L ++ + +            +L E+ L  + ++ K+    L    NL  L L   S S
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 51  LVETHSSIQYLSKLVTLDMRLCKN-LNRLPSSLCELISLQRLYLSGCSNLRRIPESII-- 107
            V+  S +     L  L   L  N L ++P  L +   +Q +YL   +N+  I  +    
Sbjct: 230 AVDNGS-LANTPHLRELH--LNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCP 285

Query: 108 -----NLSKLELLHLKN 119
                  +    + L +
Sbjct: 286 PGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 45/174 (25%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLL----------KACSSL 51
           T ++    KNL NL  + L  + ++ K+     +    LE L L          K   +L
Sbjct: 65  TEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL 123

Query: 52  VETH------SSIQ-----YLSKLVTLDMRLCKNLNRL------PSSLCELISLQRLYLS 94
            E        + ++      L++++ +++      N L        +   +  L  + ++
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVEL----GTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 95  GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS 148
              N+  IP+ +     L  LHL        + ++             +L  L 
Sbjct: 180 DT-NITTIPQGL--PPSLTELHLDGN----KITKVDAASLK----GLNNLAKLG 222

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 15/130 (11%)

Query: 10  ILKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSI-QYLSKLVT 66
           +  +  +L+++ L+ + ++ K+ D       +L  L L   + L    S + + L KL  
Sbjct: 294 VFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEV 351

Query: 67  LDMRLCKNLNRLPSSLCE-LISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKN----- 119
           LD+     +  L       L +L+ L L     L+ +P+ I   L+ L+ + L       
Sbjct: 352 LDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409

Query: 120 -CSKLLSLPE 128
            C ++  L  
Sbjct: 410 SCPRIDYLSR 419

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 25  SRQLKKLPDLSQARNLENLLLKAC--SSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSL 82
           +R L ++P+L    ++  + L     + L    +S   L  L  L +        + ++ 
Sbjct: 19  NRGLHQVPELP--AHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 83  CE-LISLQRLYLSGCSNLRRIPESI-INLSKLELLHLKNCSKLLSLPELPCNLFSVGVRR 140
              L SL  L L   +   ++       L+ LE+L L  C+  L    L  N F    + 
Sbjct: 75  FRGLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCN--LDGAVLSGNFF----KP 127

Query: 141 CTSLEALSSFSFLFSAMSPHN--DQYFNLSDCLKLDQNELKGIAEDALQKIQQKATSW 196
            TSLE L         + P +           L L  N++K I E+ L   Q K  + 
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHV-LDLTFNKVKSICEEDLLNFQGKHFTL 184

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACS-SLVETHSSIQYLSKLVTL 67
           L    NL E+ +   + L+ L    L     L NL +       V    +  +  +L  L
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRL 85

Query: 68  DMRLCKNLNRLPSSLCELISLQRLYLSG 95
           ++     L  L     + +SLQ L LSG
Sbjct: 86  NLSFN-ALESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 73  KNLNRLPSSLCELISLQRLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPE 128
                    L    +L  LY+    +L+ +    +  L +L  L +     L  +  
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP 73

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 29/143 (20%)

Query: 4   TNLRFLILKNLVNLKEIDLSYSRQLKKLPDLSQA----RNLENLLLKACS-SLVETHSSI 58
           T+  F    +L  L+ + L  + QLK+L  +++     ++L+ L +   S S  E     
Sbjct: 337 TDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 59  QYLSKLVTLDMRLCK---------------------NLNRLPSSLCELISLQRLYLSGCS 97
            +   L++L+M                          +  +P  + +L +LQ L ++   
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN- 454

Query: 98  NLRRIPESII-NLSKLELLHLKN 119
            L+ +P+ I   L+ L+ + L  
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHT 477

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 33/118 (27%)

Query: 205 DYKYKPSCGGIYFPGSE--IPKWFRFSSMGSSIEFKPQSDWINNEYLGIAF-----CAVL 257
           +Y  +     +         P   R   + S +E          ++L IA+      A  
Sbjct: 123 NYSSEVKENSVDSDDKAKVPPL-IRI--V-SGLELSDTKQK-GKKFLVIAYEPFENIA-- 175

Query: 258 RCRIRFKIPSHDWYVRTIDYVESDHLFMGY--------YFFHGDKGDSRQDFEKALFK 307
                 ++P        I + E++ +                 D   S+  + +  FK
Sbjct: 176 -----IELPP-----NEILFSENNDMDNNNDGVDELNKKCTFWDA-ISKLYYVQFFFK 222

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 25/132 (18%)

Query: 13  NLVNLKEIDLSYSRQLKKLP------DLSQARNLENLLLKAC--SSLVETHSSIQYLSKL 64
           +L  LKE++++++  ++         +L+   NLE+L L +    S+    + ++ L ++
Sbjct: 122 HLKTLKELNVAHN-LIQSFKLPEYFSNLT---NLEHLDLSSNKIQSI--YCTDLRVLHQM 175

Query: 65  VTLDMRLCKNLNRL---PSSLCELISLQRLYLSGCSNLRRIPESII-NLSKLELLHLKN- 119
             L++ L  +LN +        + I L+ L L     L+ +P+ I   L+ L+ + L   
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234

Query: 120 -----CSKLLSL 126
                C ++  L
Sbjct: 235 PWDCSCPRIDYL 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.75
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.71
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.71
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.69
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.69
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.67
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.66
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.66
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.65
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.65
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.57
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.54
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.51
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.5
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.49
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.38
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.3
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.91
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.72
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.47
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.11
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.59
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.53
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.73

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=7e-22  Score=185.23  Aligned_cols=171  Identities=25%  Similarity=0.259  Sum_probs=143.9

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCC-----
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCE-----   84 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~-----   84 (366)
                      +.++++|++|+|++|.+. .+|. ++++++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..++.     
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            456888999999999886 6775 888999999999988655 78888999999999999998888888887654     


Q ss_pred             ----CCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC
Q 017788           85 ----LISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH  160 (366)
Q Consensus        85 ----l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~  160 (366)
                          +++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.        .+.++++|+.|+++.|.+.+.+|.
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~--------~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP--------AIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCG--------GGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCch--------hhccCCCCCEEECcCCcchhhhHH
Confidence                889999999998766 78888999999999999998654 5665        677888999999999988888999


Q ss_pred             CCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          161 NDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       161 ~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .++.+..|+.+++++|.+.+.+|..+.++++|+
T Consensus       248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred             HhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence            999999999999999988888887777666664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=9.5e-22  Score=184.36  Aligned_cols=172  Identities=20%  Similarity=0.267  Sum_probs=156.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccC---------CcCCcEEecccccccCccch
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQY---------LSKLVTLDMRLCKNLNRLPS   80 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~---------L~~L~~L~L~~n~~~~~lp~   80 (366)
                      ++++++|++|+|++|.+. .+|. +.++++|++|++++|...+.+|..++.         +++|++|+|++|.+ ..+|.
T Consensus       123 ~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~  200 (328)
T 4fcg_A          123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPA  200 (328)
T ss_dssp             GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCG
T ss_pred             HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchH
Confidence            567899999999999986 7775 999999999999999999999987765         99999999999985 48999


Q ss_pred             hcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC
Q 017788           81 SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH  160 (366)
Q Consensus        81 ~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~  160 (366)
                      .++.+++|++|+|++|.+. .+|..++.+++|+.|++++|...+.+|.        .+.++++|+.|+++.|.+.+.+|.
T Consensus       201 ~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             hhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcch
Confidence            9999999999999999876 5777899999999999999999999998        788899999999999998888999


Q ss_pred             CCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          161 NDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       161 ~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .+..+..|+.+++++|.+.+.+|..+.+++.+.
T Consensus       272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             hhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            999999999999999999999998887776664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.84  E-value=1.4e-21  Score=203.07  Aligned_cols=181  Identities=19%  Similarity=0.176  Sum_probs=114.8

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      ++++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..++.+++|++|+|++|++.+.+|..++.+++|++|
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL  519 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence            445555555555555555554 5556666666666665555556666666666666666666555666666666666666


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCc---cE---------------------------------
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNL---FS---------------------------------  135 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L---~~---------------------------------  135 (366)
                      +|++|.+.+.+|..++++++|+.|++++|++.+.+|......   ..                                 
T Consensus       520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (768)
T 3rgz_A          520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI  599 (768)
T ss_dssp             ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred             ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence            666666666666666666666666666666655555321110   00                                 


Q ss_pred             --------------------------EecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHH
Q 017788          136 --------------------------VGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKI  189 (366)
Q Consensus       136 --------------------------L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l  189 (366)
                                                -.+.++++|+.|+++.|.+++.+|..++.+..++.|+|++|.++|.+|..++++
T Consensus       600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence                                      012335667778888888888788888888888888888888888888877777


Q ss_pred             Hhhh
Q 017788          190 QQKA  193 (366)
Q Consensus       190 ~~L~  193 (366)
                      +.|+
T Consensus       680 ~~L~  683 (768)
T 3rgz_A          680 RGLN  683 (768)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            6665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=7.1e-21  Score=197.87  Aligned_cols=175  Identities=20%  Similarity=0.168  Sum_probs=147.8

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +..+++|++|+|++|++.+.+|. +.++++|++|++++|.+.+.+|..++.+++|++|+|++|.+.+.+|..++.+++|+
T Consensus       462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI  541 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred             HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence            44678899999999998888886 88899999999999988888888899999999999999988888898888899999


Q ss_pred             EEEeeCCCCCCcchHHHh--------------------------------------------------------------
Q 017788           90 RLYLSGCSNLRRIPESII--------------------------------------------------------------  107 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~--------------------------------------------------------------  107 (366)
                      .|++++|.+.+.+|..+.                                                              
T Consensus       542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred             EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence            999998887777775543                                                              


Q ss_pred             --------ccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhh
Q 017788          108 --------NLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELK  179 (366)
Q Consensus       108 --------~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~  179 (366)
                              .+++|+.|++++|++.+.+|.        .++++++|+.|+++.|.+++.+|..++.+..|+.|+|++|.++
T Consensus       622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--------~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPK--------EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             EECCCSCSSSBCCCEEECCSSCCBSCCCG--------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ccCchhhhccccccEEECcCCcccccCCH--------HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence                    246788889999888888887        7788888888888888888888888888888888888888888


Q ss_pred             cchHHHHHHHHhhh
Q 017788          180 GIAEDALQKIQQKA  193 (366)
Q Consensus       180 ~~~~~~~~~l~~L~  193 (366)
                      |.+|..+.+++.|+
T Consensus       694 g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          694 GRIPQAMSALTMLT  707 (768)
T ss_dssp             ECCCGGGGGCCCCS
T ss_pred             CcCChHHhCCCCCC
Confidence            88888887777665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=3e-21  Score=179.73  Aligned_cols=173  Identities=18%  Similarity=0.169  Sum_probs=130.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCC-CC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI-SL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~-~L   88 (366)
                      ++++++|++|+|++|.+.+.+|. +.++++|++|++++|.+.+.+|..++.+++|++|+|++|.+.+.+|..++.++ +|
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            45788999999999998778886 89999999999999988778899999999999999999998778999999888 89


Q ss_pred             cEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC---CCccEEecC------------CCcCCccccCcccc
Q 017788           89 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP---CNLFSVGVR------------RCTSLEALSSFSFL  153 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L~l~------------~~~~L~~L~l~~n~  153 (366)
                      ++|++++|.+.+.+|..+..++ |+.|++++|.+.+..|...   .+|+.|+++            .+++|+.|+++.|.
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred             cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence            9999999988888898898887 9999999987776666521   233333332            23455555555555


Q ss_pred             cccCCCCCCceEEeCCcccCChhhhhcchHH
Q 017788          154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAED  184 (366)
Q Consensus       154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~  184 (366)
                      +++.+|..+..+..++.+++++|.+++.+|.
T Consensus       256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            5544555555555555555555555554444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=1.6e-21  Score=181.51  Aligned_cols=169  Identities=18%  Similarity=0.171  Sum_probs=96.2

Q ss_pred             CCCCEEeccCCCCCC--CCCC-CCCCCCCcEEeccc-CCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           15 VNLKEIDLSYSRQLK--KLPD-LSQARNLENLLLKA-CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~--~~p~-l~~l~~L~~L~L~~-n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      .++++|+|++|.+.+  .+|. +.++++|++|++++ |...+.+|..++.+++|++|+|++|.+.+.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            456666666666655  4554 66666666666663 5555556666666666666666666655566666666666666


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCc-CCccccCcccccccCCCCCCceEEeCC
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCT-SLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      |++++|.+.+.+|..+..+++|++|++++|.+.+.+|.        .+.+++ +|+.|+++.|.+++.+|..+..+. ++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--------~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~  200 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD--------SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA  200 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG--------GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH--------HHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence            66666666556666666666666666666655545554        333443 445555555554444444444444 44


Q ss_pred             cccCChhhhhcchHHHHHHHHhh
Q 017788          170 CLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       170 ~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      .+++++|.+++..|..+.++++|
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L  223 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCC
T ss_pred             EEECcCCcccCcCCHHHhcCCCC
Confidence            45555554444444444333333

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=9.2e-20  Score=167.03  Aligned_cols=173  Identities=23%  Similarity=0.196  Sum_probs=94.0

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcccc-CccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVET-HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++++|++|+|++|.+.+..|. +.++++|++|++++|..++.+ |..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus        54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  133 (285)
T 1ozn_A           54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY  133 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence            344444444444444333332 444444455554444322222 334444444555555444433333444444445555


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+....+..++++++|+.|++++|++. .+|..       .+.++++|+.|+++.|.+++..|..+..+..++.
T Consensus       134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  205 (285)
T 1ozn_A          134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER-------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (285)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTT-------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             EECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHH-------HhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence            555544444333333444445555555544322 22210       2445678888888888888877778888888888


Q ss_pred             ccCChhhhhcchHHHHHHHHhhh
Q 017788          171 LKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       171 l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +++++|.++++.+..+..++.|+
T Consensus       206 L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          206 LYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCC
T ss_pred             eeCCCCcCCcCCHHHcccCcccC
Confidence            88888888887777776666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=2.9e-19  Score=162.83  Aligned_cols=164  Identities=15%  Similarity=0.071  Sum_probs=121.1

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|++|+|++|.+.+ ++.+..+++|++|++++|.+.+..+..++.+++|++|+|++|.+.+..|..+..+++|++
T Consensus        59 l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            4567788888888887743 556778888888888888665555555778888888888888765555555777888888


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+.+..|..++.+++|+.|++++|++.+..+.        .+.++++|+.|+++.|.+++..+..+..+..++.
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG--------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  209 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH--------HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence            88888876655555667788888888888855433333        3567788888888888888877777788888888


Q ss_pred             ccCChhhhhcchH
Q 017788          171 LKLDQNELKGIAE  183 (366)
Q Consensus       171 l~L~~n~l~~~~~  183 (366)
                      +++++|++.+..|
T Consensus       210 L~l~~N~~~~~~~  222 (272)
T 3rfs_A          210 IWLHDNPWDCTCP  222 (272)
T ss_dssp             EECCSSCBCCCTT
T ss_pred             EEccCCCccccCc
Confidence            8888888776543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.78  E-value=2.2e-18  Score=155.10  Aligned_cols=160  Identities=16%  Similarity=0.081  Sum_probs=138.1

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .++|+.|+|++|.+.+..+. +.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|+
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            35799999999999777775 99999999999999988777777799999999999999997666667788999999999


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK  172 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~  172 (366)
                      |++|.+.+..+..+..+++|+.|++++|.+.+..+.        .+.++++|+.|+++.|.+++..+..+..+..++.++
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  185 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG--------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT  185 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH--------HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            999988766666678999999999999965443333        467889999999999999997777889999999999


Q ss_pred             CChhhhhcc
Q 017788          173 LDQNELKGI  181 (366)
Q Consensus       173 L~~n~l~~~  181 (366)
                      +++|++...
T Consensus       186 l~~N~~~c~  194 (251)
T 3m19_A          186 LFGNQFDCS  194 (251)
T ss_dssp             CCSCCBCTT
T ss_pred             eeCCceeCC
Confidence            999999865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.78  E-value=2.9e-19  Score=174.20  Aligned_cols=183  Identities=17%  Similarity=0.135  Sum_probs=139.1

Q ss_pred             cCCCCCCCEEeccCCCCCCCCC-C-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh--cCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS--LCELI   86 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~--i~~l~   86 (366)
                      ++++++|++|+|++|.+.+.++ . |.++++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..|..  +..++
T Consensus        50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred             hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence            5678899999999998876664 3 889999999999998877777888999999999999999877666665  88899


Q ss_pred             CCcEEEeeCCCCCCcchHH-HhccCCCcEEcccccccccccCCCC-----------------------------------
Q 017788           87 SLQRLYLSGCSNLRRIPES-IINLSKLELLHLKNCSKLLSLPELP-----------------------------------  130 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp~~-i~~L~~L~~L~L~~n~~l~~lp~l~-----------------------------------  130 (366)
                      +|++|++++|.+.+..|.. +.++++|++|++++|.+.+..|...                                   
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  209 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF  209 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence            9999999999887776766 7889999999999887655544321                                   


Q ss_pred             --CCccEEecCCC----------------------------------------------------cCCccccCccccccc
Q 017788          131 --CNLFSVGVRRC----------------------------------------------------TSLEALSSFSFLFSA  156 (366)
Q Consensus       131 --~~L~~L~l~~~----------------------------------------------------~~L~~L~l~~n~l~~  156 (366)
                        .+|+.|+++++                                                    ++|+.|+++.|.+.+
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence              23555555443                                                    356666677777766


Q ss_pred             CCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          157 MSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       157 ~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      ..|..++.+..++.+++++|.+.++.+..+.++++|+
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  326 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL  326 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence            6677777777777777877777777666666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=2.7e-19  Score=163.94  Aligned_cols=181  Identities=19%  Similarity=0.147  Sum_probs=152.4

Q ss_pred             ccceeccCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCcc-chhc
Q 017788            5 NLRFLILKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSL   82 (366)
Q Consensus         5 ~L~~l~l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~l-p~~i   82 (366)
                      .|+.+...-.++|++|+|++|.+.+..+. +..+++|++|++++|.+.+..|..++.+++|++|++++|..++.+ |..+
T Consensus        22 ~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~  101 (285)
T 1ozn_A           22 GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (285)
T ss_dssp             CCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             CcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence            34444455567999999999999665555 999999999999999777766889999999999999999744444 7789


Q ss_pred             CCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCC
Q 017788           83 CELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND  162 (366)
Q Consensus        83 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~  162 (366)
                      ..+++|++|++++|.+.+..|..+.++++|++|++++|.+....+.        .+.++++|+.|+++.|.++...+..+
T Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD--------TFRDLGNLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh--------HhccCCCccEEECCCCcccccCHHHh
Confidence            9999999999999998887788899999999999999966543333        46788999999999999998666778


Q ss_pred             ceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          163 QYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       163 ~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      ..+..++.+++++|.+.+..|..+.++++|+
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cCccccCEEECCCCcccccCHhHccCccccc
Confidence            9999999999999999988887776666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=9.3e-19  Score=159.23  Aligned_cols=170  Identities=22%  Similarity=0.182  Sum_probs=111.9

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      ++|++|+|++|.+....+. |.++++|++|++++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            4578888888877554443 777888888888877554433344577788888888877755444445667788888888


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL  173 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L  173 (366)
                      ++|.+....|..+..+++|++|++++|.+ +.+|..       .+.++++|+.|+++.|.++...+..+..+..++.+++
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKG-------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHh-------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence            88777666666677788888888888754 334431       2455666666677666666655555666666666777


Q ss_pred             ChhhhhcchHHHHHHHHhh
Q 017788          174 DQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       174 ~~n~l~~~~~~~~~~l~~L  192 (366)
                      ++|.++++.+..+..++.|
T Consensus       189 ~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          189 DNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTC
T ss_pred             CCCcCCcCCHHHhccccCC
Confidence            7666665555444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=6.8e-19  Score=160.35  Aligned_cols=164  Identities=18%  Similarity=0.075  Sum_probs=135.7

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +.++++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..+..+++|+
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  160 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT  160 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence            56789999999999999766665 89999999999999987766666789999999999999986655555678999999


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      +|++++|.+.+..+..++.+++|+.|++++|.+.+..|.        .+.++++|+.|+++.|.+.+..       ..+.
T Consensus       161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~N~~~~~~-------~~l~  225 (272)
T 3rfs_A          161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG--------VFDRLTSLQYIWLHDNPWDCTC-------PGIR  225 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSSCBCCCT-------TTTH
T ss_pred             EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH--------HHhCCcCCCEEEccCCCccccC-------cHHH
Confidence            999999988876777789999999999999976655544        4678899999999999887633       3466


Q ss_pred             cccCChhhhhcchHHHHHHH
Q 017788          170 CLKLDQNELKGIAEDALQKI  189 (366)
Q Consensus       170 ~l~L~~n~l~~~~~~~~~~l  189 (366)
                      .+++..|.+.|.+|..++.+
T Consensus       226 ~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          226 YLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             HHHHHHHHTGGGBBCTTSCB
T ss_pred             HHHHHHHhCCCcccCccccc
Confidence            77888888888777665433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=4.6e-18  Score=154.61  Aligned_cols=162  Identities=16%  Similarity=0.083  Sum_probs=137.3

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +.++++|++|+|++|.+....+. |.++++|++|++++|.+....+..+..+++|++|+|++|.+.+..|..+..+++|+
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  136 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT  136 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence            66889999999999998654445 78999999999999977665556779999999999999997776677788999999


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      +|++++|.+....+..+..+++|+.|++++|.+....+.        .+.++++|+.|+++.|.++...+..+..+..++
T Consensus       137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG--------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh--------HhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence            999999987765556689999999999999965443333        467889999999999999987777788899999


Q ss_pred             cccCChhhhhc
Q 017788          170 CLKLDQNELKG  180 (366)
Q Consensus       170 ~l~L~~n~l~~  180 (366)
                      .+++++|++..
T Consensus       209 ~L~l~~N~~~c  219 (270)
T 2o6q_A          209 MLQLQENPWDC  219 (270)
T ss_dssp             EEECCSSCBCC
T ss_pred             EEEecCCCeeC
Confidence            99999999764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=1.1e-18  Score=169.88  Aligned_cols=181  Identities=22%  Similarity=0.221  Sum_probs=113.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +.++++|++|+|++|.+....+. |.++++|++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|+
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence            56777888888888877554444 77888888888888765544445677788888888888775444444667777788


Q ss_pred             EEEeeCCCCCCcchH-HHhccCCCcEEcccccccccccCCCC--CCccEEec-------------CCCcCCccccCcccc
Q 017788           90 RLYLSGCSNLRRIPE-SIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGV-------------RRCTSLEALSSFSFL  153 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~-~i~~L~~L~~L~L~~n~~l~~lp~l~--~~L~~L~l-------------~~~~~L~~L~l~~n~  153 (366)
                      +|++++|...+.++. .+.++++|+.|++++|. ++.+|.+.  .+|+.|++             .++++|+.|+++.|.
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence            888877666555554 56777777777777774 34555321  23333332             234455555566665


Q ss_pred             cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788          154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      ++...+..+..+..|+.|+|++|.++++.+..+..+++|
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            555555555555556666666666555554444444333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.75  E-value=2.3e-19  Score=182.71  Aligned_cols=152  Identities=14%  Similarity=0.198  Sum_probs=106.9

Q ss_pred             CCC-CCCCCCCcEEecccCCCccc-----------------cCcccc--CCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           31 LPD-LSQARNLENLLLKACSSLVE-----------------THSSIQ--YLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        31 ~p~-l~~l~~L~~L~L~~n~~~~~-----------------~p~~i~--~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +|. ++++++|++|+|++|.+.+.                 +|+.++  ++++|++|+|++|.+.+.+|..++++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            554 77788888888888876654                 777777  8888888888888877888888888888888


Q ss_pred             EEeeCCC-CCC-cchHHHhcc------CCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCC
Q 017788           91 LYLSGCS-NLR-RIPESIINL------SKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND  162 (366)
Q Consensus        91 L~Ls~n~-~~~-~lp~~i~~L------~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~  162 (366)
                      |++++|. +.+ .+|..++++      ++|++|++++|.+. .+|..-      .+.++++|+.|+++.|.+.+.+| .+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~------~l~~l~~L~~L~L~~N~l~g~ip-~~  349 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET------SLQKMKKLGMLECLYNQLEGKLP-AF  349 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH------HHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh------hhccCCCCCEEeCcCCcCccchh-hh
Confidence            8888887 665 678777776      78888888887554 666300      14556667777777777775566 66


Q ss_pred             ceEEeCCcccCChhhhhcchHHHHHHHHh
Q 017788          163 QYFNLSDCLKLDQNELKGIAEDALQKIQQ  191 (366)
Q Consensus       163 ~~l~~l~~l~L~~n~l~~~~~~~~~~l~~  191 (366)
                      +.+..++.+++++|.+. .+|..+.+++.
T Consensus       350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             EEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred             CCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence            67777777777777666 33443444333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=169.29  Aligned_cols=113  Identities=21%  Similarity=0.202  Sum_probs=72.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +.++++|++|+|++|++....+. |.++++|++|+|++|.+....|..+..+++|++|+|++|.+.+..|..+..+++|+
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            34556666666666665433333 56666666666666665555566666677777777777665555556667777777


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccc
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL  123 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l  123 (366)
                      +|++++|.+....+..+.++++|+.|++++|.+.
T Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             EEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            7777777666555556667777777777666443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=2.7e-18  Score=158.76  Aligned_cols=162  Identities=23%  Similarity=0.156  Sum_probs=119.7

Q ss_pred             CCCCCCCEEeccCCCCCCCCC--CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCC
Q 017788           12 KNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISL   88 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L   88 (366)
                      .++++|++|++++|.+.+..+  .+..+++|++|++++|...+..+..++.+++|++|++++|.+.+ .+|..+..+++|
T Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A           98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            456677777777777654443  37777777788877776666666677777888888888777555 467777778888


Q ss_pred             cEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE-e
Q 017788           89 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN-L  167 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~  167 (366)
                      ++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.        .+.++++|+.|+++.|.+.+..+..+..+. .
T Consensus       178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--------hccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence            8888888777666677777788888888887754433332        456778899999999999888888888774 8


Q ss_pred             CCcccCChhhhhcc
Q 017788          168 SDCLKLDQNELKGI  181 (366)
Q Consensus       168 l~~l~L~~n~l~~~  181 (366)
                      ++.+++++|++.+.
T Consensus       250 L~~L~L~~N~~~~~  263 (306)
T 2z66_A          250 LAFLNLTQNDFACT  263 (306)
T ss_dssp             CCEEECTTCCEECS
T ss_pred             CCEEEccCCCeecc
Confidence            88999999988764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=1.1e-18  Score=169.87  Aligned_cols=181  Identities=18%  Similarity=0.112  Sum_probs=145.3

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      -.++++.|+|++|++....+. |.++++|++|+|++|.+....+..+.++++|++|+|++|.+....+..+..+++|++|
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            346899999999999766655 9999999999999998777667889999999999999998655555578899999999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCC----CCCccEEecCC-----------CcCCccccCccccccc
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL----PCNLFSVGVRR-----------CTSLEALSSFSFLFSA  156 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l----~~~L~~L~l~~-----------~~~L~~L~l~~n~l~~  156 (366)
                      +|++|.+....+..+.++++|+.|++++|+.++.++..    ..+|+.|++++           +++|+.|+++.|.+++
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence            99999877666668999999999999998888877752    25666666543           4577777777777777


Q ss_pred             CCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          157 MSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       157 ~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      ..|..+..+..|+.|+|++|.++++.+.++.++++|+
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV  258 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence            6677777777777788888777777776666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=1.1e-18  Score=170.09  Aligned_cols=183  Identities=19%  Similarity=0.169  Sum_probs=146.1

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCcc--ccCCcCCcEEecccccccCccchh-cCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSS--IQYLSKLVTLDMRLCKNLNRLPSS-LCELI   86 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~--i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~   86 (366)
                      ++++++|++|+|++|.+.+..|. +.++++|++|++++|.+.+..+..  ++.+++|++|+|++|.+.+..|.. +..++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            56789999999999999777675 999999999999999777655554  889999999999999977776776 78899


Q ss_pred             CCcEEEeeCCCCCCcchHHHhcc----------------------------------CCCcEEcccccccccccCC----
Q 017788           87 SLQRLYLSGCSNLRRIPESIINL----------------------------------SKLELLHLKNCSKLLSLPE----  128 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp~~i~~L----------------------------------~~L~~L~L~~n~~l~~lp~----  128 (366)
                      +|++|++++|.+.+..|..+..+                                  ++|++|++++|.+.+..|.    
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            99999999998877766655544                                  5788888888765432221    


Q ss_pred             --------------------------------------CCCCccEEec-------------CCCcCCccccCcccccccC
Q 017788          129 --------------------------------------LPCNLFSVGV-------------RRCTSLEALSSFSFLFSAM  157 (366)
Q Consensus       129 --------------------------------------l~~~L~~L~l-------------~~~~~L~~L~l~~n~l~~~  157 (366)
                                                            ...+++.|++             .++++|+.|+++.|.+.+.
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence                                                  0135666654             4578899999999999998


Q ss_pred             CCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          158 SPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       158 ~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .|..+..+..|+.+++++|.+.++.+..+.+++.|+
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence            888999999999999999999888888877777665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.74  E-value=1.4e-18  Score=169.70  Aligned_cols=181  Identities=22%  Similarity=0.203  Sum_probs=121.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      |.++++|++|+|++|.+.+..|. |.++++|++|+|++|.+....+..++.+++|++|+|++|.+....+..+..+++|+
T Consensus        95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  174 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM  174 (452)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence            56788889999998888665555 88888899999988866655555688888888888888885544444677888888


Q ss_pred             EEEeeCCCCCCcchH-HHhccCCCcEEcccccccccccCCCC--CCccEEec-------------CCCcCCccccCcccc
Q 017788           90 RLYLSGCSNLRRIPE-SIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGV-------------RRCTSLEALSSFSFL  153 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~-~i~~L~~L~~L~L~~n~~l~~lp~l~--~~L~~L~l-------------~~~~~L~~L~l~~n~  153 (366)
                      +|++++|...+.+|. .+.++++|+.|++++|.+ ..+|.+.  .+|+.|++             .++++|+.|+++.|.
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence            888888766666654 477788888888888744 4455322  34444443             234556666666666


Q ss_pred             cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788          154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      +.+..+..+..+..|+.++|++|.++++.+..+..+++|
T Consensus       254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence            665555556666666666666666665555444444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.74  E-value=1.5e-18  Score=169.54  Aligned_cols=180  Identities=18%  Similarity=0.072  Sum_probs=136.3

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .++|++|+|++|.+.+..|+ |.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+....+..+..+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            46899999999999776665 99999999999999988777778999999999999999996655555688999999999


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCC----CCCccEEecCC-----------CcCCccccCcccccccC
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL----PCNLFSVGVRR-----------CTSLEALSSFSFLFSAM  157 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l----~~~L~~L~l~~-----------~~~L~~L~l~~n~l~~~  157 (366)
                      |++|.+....+..+.++++|+.|++++|+.++.+|..    ..+|+.|++++           +++|+.|+++.|.+++.
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence            9999877655668999999999999998888887752    23455554432           34556666666666655


Q ss_pred             CCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          158 SPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       158 ~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .|..+..+..|+.+++++|.++++.+.++..+++|+
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence            555566666666666666666655555554444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=3.8e-18  Score=147.87  Aligned_cols=156  Identities=18%  Similarity=0.119  Sum_probs=133.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      .+.+++|++|++++|.+. .+|.+..+++|++|++++|. +..+ +.+..+++|++|++++|.+.+..|..++.+++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            456789999999999985 67789999999999999993 3443 47899999999999999987778899999999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+....|..+..+++|++|++++|..++.+|         .+.++++|+.|+++.|.++. ++ .+..+..++.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---------~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~  185 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---------PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ  185 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---------GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---------hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence            9999999888889999999999999999997567765         46788999999999999987 44 7788999999


Q ss_pred             ccCChhhhhc
Q 017788          171 LKLDQNELKG  180 (366)
Q Consensus       171 l~L~~n~l~~  180 (366)
                      +++++|++.+
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            9999998753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=1.5e-18  Score=158.11  Aligned_cols=170  Identities=16%  Similarity=0.056  Sum_probs=113.7

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +.++++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            55677888888888877554443 77888888888888866666667778888888888888875555454677888888


Q ss_pred             EEEeeCCCCCC-cchHHHhccCCCcEEcccccccccccCCCC---CCcc----EEecCC------------CcCCccccC
Q 017788           90 RLYLSGCSNLR-RIPESIINLSKLELLHLKNCSKLLSLPELP---CNLF----SVGVRR------------CTSLEALSS  149 (366)
Q Consensus        90 ~L~Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~----~L~l~~------------~~~L~~L~l  149 (366)
                      +|++++|.+.. .+|..+.++++|++|++++|++.+..+...   .+++    .|++++            ..+|+.|++
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L  207 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL  207 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEEC
Confidence            88888887665 367888888888888888875543322211   1122    233322            225666666


Q ss_pred             cccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788          150 FSFLFSAMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       150 ~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      +.|.+++..+..+..+..++.+++++|++.+
T Consensus       208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCceeecCHhHhcccccccEEEccCCcccc
Confidence            6666666544555666666666777666664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=3.4e-18  Score=149.23  Aligned_cols=164  Identities=15%  Similarity=0.048  Sum_probs=113.9

Q ss_pred             eeccCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCC
Q 017788            8 FLILKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI   86 (366)
Q Consensus         8 ~l~l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~   86 (366)
                      .+...-.++|++|++++|.+.+..+. +.++++|++|++++|.+....+..+..+++|++|+|++|.+.+..+..+..++
T Consensus        21 ~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  100 (208)
T 2o6s_A           21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT  100 (208)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence            33344456788888888888654444 77888888888888866544444567888888888888885544444567888


Q ss_pred             CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE
Q 017788           87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN  166 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  166 (366)
                      +|++|++++|.+.+..+..+.++++|++|++++|.+. .+|..       .+.++++|+.|+++.|.+.+       .+.
T Consensus       101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~-------~~~~l~~L~~L~l~~N~~~~-------~~~  165 (208)
T 2o6s_A          101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDG-------VFDRLTSLQYIWLHDNPWDC-------TCP  165 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT-------TTTTCTTCCEEECCSCCBCC-------CTT
T ss_pred             CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHH-------HhccCCCccEEEecCCCeec-------CCC
Confidence            8888888888776655556788888888888888554 34431       35667778888888776665       223


Q ss_pred             eCCcccCChhhhhcchHHHH
Q 017788          167 LSDCLKLDQNELKGIAEDAL  186 (366)
Q Consensus       167 ~l~~l~L~~n~l~~~~~~~~  186 (366)
                      .++.+++..|.++|.+|..+
T Consensus       166 ~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          166 GIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             TTHHHHHHHHHCTTTBBCTT
T ss_pred             CHHHHHHHHHhCCceeeccC
Confidence            45566666677766665444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.73  E-value=4.4e-18  Score=171.81  Aligned_cols=182  Identities=19%  Similarity=0.102  Sum_probs=123.7

Q ss_pred             cCCCCCCCEEeccCCCCCCCC--CC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKL--PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELI   86 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~--p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~   86 (366)
                      +.++++|++|++++|.+.+..  |. +.++++|++|++++|...+..|..++.+++|++|++++|.+.+..|.. +..++
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            456788888888888876553  43 788888888888888777777778888888888888888866655543 77888


Q ss_pred             CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccc-cCC-----CCCCccEEec-------------CCCcCCccc
Q 017788           87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS-LPE-----LPCNLFSVGV-------------RRCTSLEAL  147 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~-lp~-----l~~~L~~L~l-------------~~~~~L~~L  147 (366)
                      +|++|++++|.+.+..|..+..+++|+.|++++|++.+. +|.     ..++|+.|++             .++++|+.|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            888888888887777777788888888888888866542 221     0123333332             234556666


Q ss_pred             cCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          148 SSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       148 ~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +++.|.+++..|..+..+..+ .+++++|.++++.|..+..++.|+
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence            666666655555555555555 566666666665555555555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=1.1e-17  Score=156.50  Aligned_cols=177  Identities=15%  Similarity=0.079  Sum_probs=136.8

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .++|++|+|++|.+.+..|. +.++++|++|++++|.+.+..|..++.+++|++|++++|. +..+|..+.  ++|++|+
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELR  129 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEE
Confidence            45799999999998666564 9999999999999998777778889999999999999998 557787764  8999999


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEccccccccc--ccCCCCC--CccEEecCCC----------cCCccccCcccccccCC
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLL--SLPELPC--NLFSVGVRRC----------TSLEALSSFSFLFSAMS  158 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~--~lp~l~~--~L~~L~l~~~----------~~L~~L~l~~n~l~~~~  158 (366)
                      +++|.+....+..+.++++|+.|++++|.+..  ..|....  +|+.|++.++          ++|+.|+++.|.+.+..
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence            99998776666678999999999999986632  3333221  4555555442          47888888888888766


Q ss_pred             CCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          159 PHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       159 ~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +..+..+..++.+++++|.+.++.+..+..+++|+
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  244 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR  244 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence            67778888888888888888877766665555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=1.2e-17  Score=156.17  Aligned_cols=176  Identities=15%  Similarity=0.095  Sum_probs=123.9

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..|..++.+++|++|++++|. ++.+|..+.  ++|++|+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELR  127 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEE
Confidence            35788999999988666554 8889999999999887776668888899999999999888 556777654  7888888


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEccccccccc--ccCCC---CCCccEEecCCC----------cCCccccCcccccccC
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLL--SLPEL---PCNLFSVGVRRC----------TSLEALSSFSFLFSAM  157 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~--~lp~l---~~~L~~L~l~~~----------~~L~~L~l~~n~l~~~  157 (366)
                      +++|.+.+..+..+.++++|+.|++++|....  ..+..   ..+|+.|++.++          ++|+.|+++.|.+++.
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV  207 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc
Confidence            88888776667778888888888888886532  33321   134455544432          4566666666666665


Q ss_pred             CCCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788          158 SPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       158 ~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      .+..+..+..++.+++++|.+++..+..+..+++|
T Consensus       208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  242 (330)
T 1xku_A          208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  242 (330)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence            55566666666666776666666555444444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=1.5e-17  Score=151.53  Aligned_cols=146  Identities=18%  Similarity=0.121  Sum_probs=115.8

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L   88 (366)
                      ++++++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..+..++.+++|++|++++|.+.. .+|..+..+++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L  151 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence            56789999999999999766665 9999999999999997766666679999999999999999655 478999999999


Q ss_pred             cEEEeeCCCCCCcchHHHhccCCCc----EEcccccccccccCCCC--CCccEEecC-------------CCcCCccccC
Q 017788           89 QRLYLSGCSNLRRIPESIINLSKLE----LLHLKNCSKLLSLPELP--CNLFSVGVR-------------RCTSLEALSS  149 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp~~i~~L~~L~----~L~L~~n~~l~~lp~l~--~~L~~L~l~-------------~~~~L~~L~l  149 (366)
                      ++|++++|.+.+..+..+..+.+|+    .|++++|.+....+...  .+|+.|+++             ++++|+.|++
T Consensus       152 ~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred             CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence            9999999988776677777777776    78888886543333222  256666654             4667888888


Q ss_pred             ccccccc
Q 017788          150 FSFLFSA  156 (366)
Q Consensus       150 ~~n~l~~  156 (366)
                      +.|.+..
T Consensus       232 ~~N~~~c  238 (276)
T 2z62_A          232 HTNPWDC  238 (276)
T ss_dssp             CSSCBCC
T ss_pred             cCCcccc
Confidence            8887765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=8.8e-18  Score=151.11  Aligned_cols=168  Identities=18%  Similarity=0.170  Sum_probs=142.7

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      ...++++++++.+ ..+|. +.  ++|+.|+|++|.+.+..+..++.+++|++|+|++|.+.+..|..+..+++|++|+|
T Consensus        14 ~~~~~l~~~~~~l-~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSL-DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCC-SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCc-cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            3578899999988 45664 54  68999999999888777778999999999999999987777778899999999999


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL  173 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L  173 (366)
                      ++|.+....+..+..+++|++|++++|.+. .+|..       .+.++++|+.|+++.|.+++..+..++.+..++.++|
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  162 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSG-------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL  162 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCC-CcChh-------HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence            999888777778899999999999999654 44431       3578899999999999999977778999999999999


Q ss_pred             ChhhhhcchHHHHHHHHhhh
Q 017788          174 DQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       174 ~~n~l~~~~~~~~~~l~~L~  193 (366)
                      ++|.++++.+..+.+++.|+
T Consensus       163 ~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          163 STNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             CSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCcCCccCHHHHhCCCCCC
Confidence            99999988877776666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.72  E-value=1.1e-17  Score=160.10  Aligned_cols=180  Identities=14%  Similarity=0.053  Sum_probs=129.7

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~L   88 (366)
                      ++++++|++|+|++|.+.+..+. +.++++|++|++++|.+.+..|..++.+++|++|+|++|.+ ..+|.. +..+++|
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKL  143 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCCHHHhcCCCCC
Confidence            34678899999998888655553 88889999999998877666667788889999999998884 456654 5788889


Q ss_pred             cEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC-------------------CCccEEecCCC--------
Q 017788           89 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP-------------------CNLFSVGVRRC--------  141 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~-------------------~~L~~L~l~~~--------  141 (366)
                      ++|++++|.+.+..|..+.++++|++|++++|.+...-....                   .+++.|++.++        
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~  223 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  223 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence            999999888777667778888888888888886543211112                   23444444332        


Q ss_pred             --cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          142 --TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       142 --~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                        ++|+.|+++.|.+++.  ..+..+..++.+++++|.++++.|..+.++++|+
T Consensus       224 ~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  275 (390)
T 3o6n_A          224 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE  275 (390)
T ss_dssp             CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred             ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence              3566777777766652  3566777788888888888877777776666665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=1.6e-18  Score=160.35  Aligned_cols=172  Identities=13%  Similarity=0.098  Sum_probs=91.9

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      .++|++|+|++|.+....+. +.++++|++|++++|.+..  ..+..+..+++|++|+|++|. +..+|..+..+++|++
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH  105 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence            35677777777776432223 6677777777777765432  124455556666666666665 3345555666666666


Q ss_pred             EEeeCCCCCCcch-HHHhccCCCcEEcccccccccccCCCC---CCccEE--------------ecCCCcCCccccCccc
Q 017788           91 LYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPELP---CNLFSV--------------GVRRCTSLEALSSFSF  152 (366)
Q Consensus        91 L~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L--------------~l~~~~~L~~L~l~~n  152 (366)
                      |++++|.+.+..+ ..+..+++|++|++++|.+....|...   .+|+.|              .+.++++|+.|+++.|
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            6666665443322 345566666666666665444444311   111111              2333445555555555


Q ss_pred             ccccCCCCCCceEEeCCcccCChhhhhcchHHHH
Q 017788          153 LFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDAL  186 (366)
Q Consensus       153 ~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~  186 (366)
                      .+++..|..+..+..++.+++++|.++++.+..+
T Consensus       186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             CcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence            5555445555555555555555555554443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=1.1e-17  Score=169.11  Aligned_cols=180  Identities=14%  Similarity=0.047  Sum_probs=126.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~L   88 (366)
                      +.++++|++|+|++|.+.+..|. |+.+++|++|+|++|.+.+..|..++++++|++|+|++|.+. .+|.. ++.+++|
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L  149 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL  149 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCC
Confidence            34578899999999888766664 888999999999988776666667788999999999988854 45544 5788999


Q ss_pred             cEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCC-------------------ccEEecCCC--------
Q 017788           89 QRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN-------------------LFSVGVRRC--------  141 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~-------------------L~~L~l~~~--------  141 (366)
                      ++|+|++|.+.+..|..++++++|++|++++|.+...-+...++                   |+.|+++++        
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            99999998887777778888889999999888654322122223                   333333322        


Q ss_pred             --cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          142 --TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       142 --~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                        ++|+.|+++.|.+++  +..+..+..|..|+|++|.+.++.|..+..++.|+
T Consensus       230 ~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  281 (597)
T 3oja_B          230 VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE  281 (597)
T ss_dssp             CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred             cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence              245556666665554  24455666777777777777777666666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1.6e-18  Score=181.06  Aligned_cols=157  Identities=20%  Similarity=0.213  Sum_probs=97.1

Q ss_pred             cCCCCCCCEEeccCCCCCC-----------------CCCC-CC--CCCCCcEEecccCCCccccCccccCCcCCcEEecc
Q 017788           11 LKNLVNLKEIDLSYSRQLK-----------------KLPD-LS--QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR   70 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~-----------------~~p~-l~--~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~   70 (366)
                      ++++++|++|+|++|.+.+                 .+|. ++  ++++|++|+|++|...+.+|..++++++|++|+|+
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            4455666666666666655                 1443 44  66666666666666666666666666666666666


Q ss_pred             ccc-ccC-ccchhcCCCC-------CCcEEEeeCCCCCCcchH--HHhccCCCcEEcccccccccccCCCCCCccEEecC
Q 017788           71 LCK-NLN-RLPSSLCELI-------SLQRLYLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVR  139 (366)
Q Consensus        71 ~n~-~~~-~lp~~i~~l~-------~L~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~  139 (366)
                      +|+ +.+ .+|..++.++       +|++|+|++|.+. .+|.  .++++++|+.|++++|.+. .+|         .+.
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp---------~~~  592 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE---------AFG  592 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC---------CCC
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch---------hhc
Confidence            665 444 4555444433       6666666666555 5665  6666666666666666443 444         345


Q ss_pred             CCcCCccccCcccccccCCCCCCceEEe-CCcccCChhhhh
Q 017788          140 RCTSLEALSSFSFLFSAMSPHNDQYFNL-SDCLKLDQNELK  179 (366)
Q Consensus       140 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~-l~~l~L~~n~l~  179 (366)
                      ++++|+.|+++.|.+. .+|..+..+.. |+.|++++|.+.
T Consensus       593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            5667777777777777 36666777777 777777777766

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.71  E-value=4.4e-18  Score=158.08  Aligned_cols=164  Identities=19%  Similarity=0.193  Sum_probs=82.0

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-C--CCCCCCcEEecccCCCccccCccccCC-----cCCcEEecccccccCccchhcCC
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-L--SQARNLENLLLKACSSLVETHSSIQYL-----SKLVTLDMRLCKNLNRLPSSLCE   84 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l--~~l~~L~~L~L~~n~~~~~~p~~i~~L-----~~L~~L~L~~n~~~~~lp~~i~~   84 (366)
                      ++++|++|+|++|++.+.+|. +  ..+++|++|+|++|.+.+. |..++.+     ++|++|+|++|.+.+..|..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            355566666666655555553 3  5555666666665544333 4444444     55555555555544444455555


Q ss_pred             CCCCcEEEeeCCCCCCc--chHHH--hccCCCcEEcccccccccccCCC-------CCCccEEe--------------cC
Q 017788           85 LISLQRLYLSGCSNLRR--IPESI--INLSKLELLHLKNCSKLLSLPEL-------PCNLFSVG--------------VR  139 (366)
Q Consensus        85 l~~L~~L~Ls~n~~~~~--lp~~i--~~L~~L~~L~L~~n~~l~~lp~l-------~~~L~~L~--------------l~  139 (366)
                      +++|++|++++|.+.+.  +|..+  .++++|++|++++|++. .++..       ..+|+.|+              +.
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC-CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc-chHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            55555555555544433  23333  45555555555555332 11110       01122221              22


Q ss_pred             CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcc
Q 017788          140 RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI  181 (366)
Q Consensus       140 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~  181 (366)
                      .+++|+.|+++.|.++. +|..+.  ..++.+++++|.+++.
T Consensus       251 ~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC
T ss_pred             hcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC
Confidence            34566666666666664 444443  4555666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.71  E-value=1e-17  Score=164.40  Aligned_cols=175  Identities=18%  Similarity=0.188  Sum_probs=104.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +.++++|++|+|++|.+.+..|. |.++++|+.|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|+
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  203 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK  203 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred             ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence            34567777888877777555554 77777777777777755444334456666666666666654444344455555555


Q ss_pred             EEEeeCCCCCCcch------------------------HHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCc
Q 017788           90 RLYLSGCSNLRRIP------------------------ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLE  145 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp------------------------~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~  145 (366)
                      .|++++|...+.+|                        ..+.++++|+.|++++|.+.+..+.        .+.++++|+
T Consensus       204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~  275 (477)
T 2id5_A          204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS--------MLHELLRLQ  275 (477)
T ss_dssp             EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT--------SCTTCTTCC
T ss_pred             eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh--------hccccccCC
Confidence            55555444433333                        3455666666666666544332222        234456667


Q ss_pred             cccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          146 ALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       146 ~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .|+++.|.+.+..|..+..+..|+.+++++|.++++.+..+..+++|+
T Consensus       276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  323 (477)
T 2id5_A          276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE  323 (477)
T ss_dssp             EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred             EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence            777777776666666666666777777777776666655555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=175.37  Aligned_cols=183  Identities=17%  Similarity=0.129  Sum_probs=115.8

Q ss_pred             cCCCCCCCEEeccCCCCCCCC-CC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh--cCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKL-PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS--LCELI   86 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~-p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~--i~~l~   86 (366)
                      ++++++|++|+|++|...+.+ |. |.++++|++|+|++|.+.+..|..++++++|++|+|++|.+.+.+|..  +..++
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            566777777777777555555 33 777777777777777666666777777777777777777765555554  66777


Q ss_pred             CCcEEEeeCCCCCCcch-HHHhccCCCcEEcccccccccccCCC--------------------------C---------
Q 017788           87 SLQRLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPEL--------------------------P---------  130 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~l--------------------------~---------  130 (366)
                      +|++|+|++|.+.+..| ..++++++|++|++++|.+.+..|..                          .         
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  203 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN  203 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence            77777777776655433 45667777777777666543222110                          0         


Q ss_pred             CCccEEecCCC---------------------------------------------------cCCccccCcccccccCCC
Q 017788          131 CNLFSVGVRRC---------------------------------------------------TSLEALSSFSFLFSAMSP  159 (366)
Q Consensus       131 ~~L~~L~l~~~---------------------------------------------------~~L~~L~l~~n~l~~~~~  159 (366)
                      .+|+.|+++++                                                   ++|+.|+++.|.+.+..+
T Consensus       204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~  283 (844)
T 3j0a_A          204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS  283 (844)
T ss_dssp             CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred             CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence            01445554432                                                   456666666776666666


Q ss_pred             CCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          160 HNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       160 ~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      ..++.+..++.++|++|.+.++.+.++..+++|+
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  317 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ  317 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence            6677777777777777777776666666655554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=4.8e-17  Score=149.67  Aligned_cols=155  Identities=22%  Similarity=0.088  Sum_probs=91.5

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      +++++|+|++|.+.+..+. +.++++|++|+|++|.+. .++.. +.+++|++|+|++|. +..+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence            4567777777776544443 667777777777776443 33332 566677777777666 4466666666777777777


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL  173 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L  173 (366)
                      ++|.+.+..|..|.++++|+.|++++|.+. .+|..       .+..+++|+.|+++.|+++...+..+..+..++.++|
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~-------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPG-------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTT-------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChh-------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence            776665544556666777777777776443 33321       2344555555555555555544444455555555555


Q ss_pred             Chhhhhc
Q 017788          174 DQNELKG  180 (366)
Q Consensus       174 ~~n~l~~  180 (366)
                      ++|.++.
T Consensus       180 ~~N~l~~  186 (290)
T 1p9a_G          180 QENSLYT  186 (290)
T ss_dssp             CSSCCCC
T ss_pred             CCCcCCc
Confidence            5555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=1.9e-17  Score=152.27  Aligned_cols=169  Identities=17%  Similarity=0.136  Sum_probs=108.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +++++++++++++++.+. .+| .+.  ++++.|+|++|.+.+..+..+..+++|++|+|++|. +..+|.. ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCC
Confidence            345667777777776663 444 343  567777777776655556667777777777777776 3344433 5677777


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      +|++++|.+. .+|..+..+++|+.|++++|++.+..|.        .+.++++|+.|+++.|.++...+..+..+..++
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG--------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSS--------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHH--------HHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            7777776544 5666667777777777777754333223        456667777777777777765555666677777


Q ss_pred             cccCChhhhhcchHHHHHHHHhhh
Q 017788          170 CLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       170 ~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .|+|++|.++++.+..+.++++|+
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~  175 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLD  175 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             EEECCCCcCCccCHHHhcCcCCCC
Confidence            777777777766665555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.70  E-value=2.3e-17  Score=154.22  Aligned_cols=178  Identities=19%  Similarity=0.136  Sum_probs=144.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ++++++|++|+|++|.+.+..|. +.++++|++|++++|.+ ..+|..+.  ++|++|++++|.+.+..+..+..+++|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence            67899999999999999777675 99999999999999854 56776654  7999999999997766667788999999


Q ss_pred             EEEeeCCCCCC--cchHHHhccCCCcEEcccccccccccCC-CCCCccEEecC-------------CCcCCccccCcccc
Q 017788           90 RLYLSGCSNLR--RIPESIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVGVR-------------RCTSLEALSSFSFL  153 (366)
Q Consensus        90 ~L~Ls~n~~~~--~lp~~i~~L~~L~~L~L~~n~~l~~lp~-l~~~L~~L~l~-------------~~~~L~~L~l~~n~  153 (366)
                      +|++++|.+..  ..+..+.++++|+.|++++|.+ +.+|. .+.+|+.|+++             ++++|+.|+++.|.
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  227 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS  227 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            99999997753  6678899999999999999865 44553 34677777654             46789999999999


Q ss_pred             cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +++..+..+..+..++.+++++|.+.. +|..+..++.|+
T Consensus       228 l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~  266 (330)
T 1xku_A          228 ISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQ  266 (330)
T ss_dssp             CCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCC
T ss_pred             CceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcC
Confidence            998777788899999999999999884 344444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=3.3e-17  Score=165.52  Aligned_cols=167  Identities=15%  Similarity=0.058  Sum_probs=109.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ++++++|++|+|++|.+.+..|. |+++++|++|+|++|.+....+..++.+++|++|+|++|.+.+..|..++.+++|+
T Consensus        95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence            56788999999999998777776 89999999999999966544344468999999999999998777777899999999


Q ss_pred             EEEeeCCCCCCcchHHHhccCCC-------------------cEEcccccccccccCCCCCCccEEecC-----------
Q 017788           90 RLYLSGCSNLRRIPESIINLSKL-------------------ELLHLKNCSKLLSLPELPCNLFSVGVR-----------  139 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L-------------------~~L~L~~n~~l~~lp~l~~~L~~L~l~-----------  139 (366)
                      +|++++|.+.+.-   ++.+++|                   +.|++++|.+....+..+.+|+.|+++           
T Consensus       175 ~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~  251 (597)
T 3oja_B          175 NLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL  251 (597)
T ss_dssp             EEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG
T ss_pred             EEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc
Confidence            9999999766432   2233333                   333333333222222233445554433           


Q ss_pred             CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788          140 RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       140 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      ++++|+.|+++.|.+.+..|..++.+..|..|+|++|.+.+
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  292 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  292 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence            23455555555555555445455555555555555554443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=6.1e-18  Score=172.14  Aligned_cols=174  Identities=16%  Similarity=0.211  Sum_probs=134.6

Q ss_pred             cCCCCCCCEEeccCCCCCCC-----------------CCC-CC--CCCCCcEEecccCCCccccCccccCCcCCcEEecc
Q 017788           11 LKNLVNLKEIDLSYSRQLKK-----------------LPD-LS--QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMR   70 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~-----------------~p~-l~--~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~   70 (366)
                      ++++++|++|+|++|.+.+.                 +|. ++  ++++|++|+|++|...+.+|..++++++|++|+|+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            77899999999999999874                 775 88  99999999999999999999999999999999999


Q ss_pred             ccc-ccC-ccchhcCCC------CCCcEEEeeCCCCCCcchH--HHhccCCCcEEcccccccccccCCCC--CCccEEec
Q 017788           71 LCK-NLN-RLPSSLCEL------ISLQRLYLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGV  138 (366)
Q Consensus        71 ~n~-~~~-~lp~~i~~l------~~L~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~L~~n~~l~~lp~l~--~~L~~L~l  138 (366)
                      +|+ +.+ .+|..++.+      ++|++|++++|.+. .+|.  .++++++|++|++++|.+.+.+|.+.  .+|+.|++
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L  360 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL  360 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence            998 777 899988876      99999999999877 8998  99999999999999998777888321  23444443


Q ss_pred             CC------------CcC-CccccCcccccccCCCCCCceEE--eCCcccCChhhhhcchHHHH
Q 017788          139 RR------------CTS-LEALSSFSFLFSAMSPHNDQYFN--LSDCLKLDQNELKGIAEDAL  186 (366)
Q Consensus       139 ~~------------~~~-L~~L~l~~n~l~~~~~~~~~~l~--~l~~l~L~~n~l~~~~~~~~  186 (366)
                      ++            +++ |+.|+++.|.++. +|..+..+.  .++.+++++|.+.+..|..+
T Consensus       361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  422 (636)
T 4eco_A          361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF  422 (636)
T ss_dssp             CSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred             CCCccccccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence            32            334 5666666666553 454444333  45555666666655544433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.70  E-value=9.4e-18  Score=169.41  Aligned_cols=178  Identities=20%  Similarity=0.173  Sum_probs=135.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCcccc--CccccCCcCCcEEecccccccCccchhcCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVET--HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI   86 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~--p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~   86 (366)
                      +.++++|++|++++|.+.+.+|.  +.++++|++|++++|.+.+..  +..++.+++|++|++++|.+.+..|..+..++
T Consensus       321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  400 (606)
T 3t6q_A          321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP  400 (606)
T ss_dssp             GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred             hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence            45789999999999998877763  899999999999999776655  77899999999999999998888888999999


Q ss_pred             CCcEEEeeCCCCCCcchH-HHhccCCCcEEcccccccccccCCCC---CCccEEecCC----------------CcCCcc
Q 017788           87 SLQRLYLSGCSNLRRIPE-SIINLSKLELLHLKNCSKLLSLPELP---CNLFSVGVRR----------------CTSLEA  146 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp~-~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L~l~~----------------~~~L~~  146 (366)
                      +|++|++++|.+.+..|. .+.++++|+.|++++|.+....|...   ++|++|++++                +++|+.
T Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence            999999999988776654 48899999999999998776666522   3444444332                345556


Q ss_pred             ccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHH
Q 017788          147 LSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQK  188 (366)
Q Consensus       147 L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~  188 (366)
                      |+++.|.+++..|..+..+..++.+++++|.+++..|..+.+
T Consensus       481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred             EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence            666666665555555566666666666666665555544433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.9e-17  Score=156.26  Aligned_cols=173  Identities=21%  Similarity=0.140  Sum_probs=141.9

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      -.++|++|++++|.+.+..+. +.++++|++|++++|.+.+..|..++.+++|++|+|++|.+.+..+..+..+++|++|
T Consensus        50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            345899999999998655553 9999999999999997776667789999999999999998554444448899999999


Q ss_pred             EeeCCCCCCcchH--HHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           92 YLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        92 ~Ls~n~~~~~lp~--~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      ++++|.+. .+|.  .+.++++|++|++++|..++.++..       .+.++++|+.|+++.|.+.+..|..+..+..++
T Consensus       130 ~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          130 NLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK-------DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             ECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             ECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHH-------HccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence            99999766 5655  7889999999999998655555421       577889999999999999998899999999999


Q ss_pred             cccCChhhhhcchHHHHHHHHhhh
Q 017788          170 CLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       170 ~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .+++++|.+..+.+..+..++.|+
T Consensus       202 ~L~l~~n~l~~~~~~~~~~~~~L~  225 (353)
T 2z80_A          202 HLILHMKQHILLLEIFVDVTSSVE  225 (353)
T ss_dssp             EEEEECSCSTTHHHHHHHHTTTEE
T ss_pred             eecCCCCccccchhhhhhhccccc
Confidence            999999998766665565566665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.70  E-value=2.3e-17  Score=166.54  Aligned_cols=174  Identities=18%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ++++++|++|+|++|.+.+..|+ |.++++|++|+|++|.+.+..|.+++++++|++|+|++|.+.+..|..++++++|+
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  131 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK  131 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred             ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence            33445555555555554433343 45555555555555544443444555555555555555553333334455555555


Q ss_pred             EEEeeCCCCCC-cchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCc----cccCcccccccCCCCCCce
Q 017788           90 RLYLSGCSNLR-RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLE----ALSSFSFLFSAMSPHNDQY  164 (366)
Q Consensus        90 ~L~Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~----~L~l~~n~l~~~~~~~~~~  164 (366)
                      +|++++|.+.+ .+|..++++++|++|++++|.+.+..|.        .+..+++|+    .++++.|.+++..+..+..
T Consensus       132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~  203 (606)
T 3vq2_A          132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN--------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG  203 (606)
T ss_dssp             EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT--------TTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred             EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh--------hhhhhhccccccceeeccCCCcceeCcccccC
Confidence            55555554433 3455555555555555555543333332        222333332    5666666666644444443


Q ss_pred             EEeCCcccCChhhhh-cchHHHHHHHHhhh
Q 017788          165 FNLSDCLKLDQNELK-GIAEDALQKIQQKA  193 (366)
Q Consensus       165 l~~l~~l~L~~n~l~-~~~~~~~~~l~~L~  193 (366)
                      . .++.+++++|.+. +..+..+.+++.++
T Consensus       204 ~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~  232 (606)
T 3vq2_A          204 I-KLHELTLRGNFNSSNIMKTCLQNLAGLH  232 (606)
T ss_dssp             C-EEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred             c-eeeeeeccCCccchhHHHHHhccccccc
Confidence            3 5666777777665 35566666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.69  E-value=1.6e-17  Score=165.69  Aligned_cols=173  Identities=20%  Similarity=0.155  Sum_probs=146.3

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .++|++|+|++|.+.+..|. |.++++|++|++++|.+.+..|.+++.+++|++|+|++|.+.+..|..++++++|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            46899999999998766665 99999999999999988777778899999999999999997777777799999999999


Q ss_pred             eeCCCCCC-cchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcc
Q 017788           93 LSGCSNLR-RIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCL  171 (366)
Q Consensus        93 Ls~n~~~~-~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l  171 (366)
                      +++|.+.+ ..|..++++++|++|++++|...+.+|..       .+.++++|+.|+++.|.+++..|..++.+..++.+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-------DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHh-------hhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            99998765 46778999999999999999867777631       57788999999999999998889999999999999


Q ss_pred             cCChhhhhcchHHHHHHHHhhh
Q 017788          172 KLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       172 ~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +++.|.+..+....+..+++|+
T Consensus       178 ~l~~n~~~~~~~~~~~~l~~L~  199 (549)
T 2z81_A          178 TLHLSESAFLLEIFADILSSVR  199 (549)
T ss_dssp             EEECSBSTTHHHHHHHSTTTBS
T ss_pred             ecccCcccccchhhHhhccccc
Confidence            9998887654444444455554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.69  E-value=5.7e-17  Score=155.05  Aligned_cols=166  Identities=14%  Similarity=0.059  Sum_probs=111.8

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCcc-ccCCcCCcEEecccccccCccchhcCCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSS-IQYLSKLVTLDMRLCKNLNRLPSSLCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~-i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L   88 (366)
                      ++++++|++|+|++|.+.+..|. +.++++|++|++++|.+. .+|.. ++.+++|++|++++|.+.+..|..+..+++|
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence            56788999999999998777676 899999999999998655 55554 5889999999999999777667778899999


Q ss_pred             cEEEeeCCCCCCcchHHHhccCC-------------------CcEEcccccccccccCCCCCCccEEecC----------
Q 017788           89 QRLYLSGCSNLRRIPESIINLSK-------------------LELLHLKNCSKLLSLPELPCNLFSVGVR----------  139 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp~~i~~L~~-------------------L~~L~L~~n~~l~~lp~l~~~L~~L~l~----------  139 (366)
                      ++|++++|.+...-   +..+++                   |+.|++++|.+...-...+.+|+.|+++          
T Consensus       168 ~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l  244 (390)
T 3o6n_A          168 QNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL  244 (390)
T ss_dssp             CEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGG
T ss_pred             CEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHH
Confidence            99999998765432   233333                   3344444443222211223455555543          


Q ss_pred             -CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788          140 -RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       140 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                       ++++|+.|+++.|.+.+..|..+..+..++.+++++|.+++
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  286 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence             24556666666666665545555555555555555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=2e-17  Score=166.94  Aligned_cols=166  Identities=20%  Similarity=0.128  Sum_probs=144.6

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .++|++|+|++|.+.+..+. |.++++|++|++++|.+.+..|.+++++++|++|+|++|.+.+..|..|+++++|++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            47899999999999766664 99999999999999987777788899999999999999997777799999999999999


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEccccccccc-ccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC--
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLL-SLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD--  169 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~-~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~--  169 (366)
                      +++|.+.+..|..++++++|++|++++|.+.+ .+|.        .+.++++|+.|+++.|.+++..+..++.+..++  
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~  182 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA--------YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV  182 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG--------GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechH--------hHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence            99998877666889999999999999997654 5677        788999999999999999998888888887765  


Q ss_pred             --cccCChhhhhcchHHHHH
Q 017788          170 --CLKLDQNELKGIAEDALQ  187 (366)
Q Consensus       170 --~l~L~~n~l~~~~~~~~~  187 (366)
                        .++++.|.++++.+..+.
T Consensus       183 l~~L~l~~n~l~~~~~~~~~  202 (606)
T 3vq2_A          183 NLSLDMSLNPIDFIQDQAFQ  202 (606)
T ss_dssp             CCEEECTTCCCCEECTTTTT
T ss_pred             cceeeccCCCcceeCccccc
Confidence              699999999877666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=7e-18  Score=150.48  Aligned_cols=164  Identities=17%  Similarity=0.185  Sum_probs=88.4

Q ss_pred             CCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC-ccccCCcCCcEEeccc-ccccCccchhcCCCCCCcEEE
Q 017788           16 NLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRL-CKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~-n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      +|++|++++|++.+..+. |.++++|++|++++|..++.++ ..+.++++|++|++++ |.+.+..+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            566667766666444442 6666667777776664233333 3566666677777766 443322234556666667777


Q ss_pred             eeCCCCCCcchHHHhccCCCc---EEcccccccccccCCCCCCccEEecCCCcCCc-cccCcccccccCCCCCCceEEeC
Q 017788           93 LSGCSNLRRIPESIINLSKLE---LLHLKNCSKLLSLPELPCNLFSVGVRRCTSLE-ALSSFSFLFSAMSPHNDQYFNLS  168 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~---~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~l  168 (366)
                      +++|.+.+ +|. +..+++|+   .|++++|..++.+|..       .+.++++|+ .|+++.|.++...+..+.. ..+
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-------~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L  181 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-------AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKL  181 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-------TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEE
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcc-------cccchhcceeEEEcCCCCCcccCHhhcCC-CCC
Confidence            66665443 554 55666665   6666666333344321       244455555 5555555555422223333 445


Q ss_pred             CcccCChhh-hhcchHHHHHHH
Q 017788          169 DCLKLDQNE-LKGIAEDALQKI  189 (366)
Q Consensus       169 ~~l~L~~n~-l~~~~~~~~~~l  189 (366)
                      +.+++++|+ ++++.+..+..+
T Consensus       182 ~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          182 DAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             EEEECTTCTTCCEECTTTTTTC
T ss_pred             CEEEcCCCCCcccCCHHHhhcc
Confidence            555555553 554444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.69  E-value=3.2e-17  Score=167.81  Aligned_cols=181  Identities=17%  Similarity=0.109  Sum_probs=112.3

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      ++++|++|+|++|.+.+..+. |+++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..++.+++|++|
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            456667777776666433333 6677777777777765554444567777777777777776666666666677777777


Q ss_pred             EeeCCCCCCcchHHHh--ccCCCcEEcccccccccccCCCC------------------------------CCccEEecC
Q 017788           92 YLSGCSNLRRIPESII--NLSKLELLHLKNCSKLLSLPELP------------------------------CNLFSVGVR  139 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~--~L~~L~~L~L~~n~~l~~lp~l~------------------------------~~L~~L~l~  139 (366)
                      ++++|.+.+..|..+.  .+++|+.|++++|.+.+..|...                              .+|+.|.+.
T Consensus       151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~  230 (680)
T 1ziw_A          151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS  230 (680)
T ss_dssp             ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred             EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence            7777766655555554  34677777777775544433211                              233344333


Q ss_pred             C-------------C--cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          140 R-------------C--TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       140 ~-------------~--~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +             +  ++|+.|+++.|.+.+..+..++.+..++.+++++|.+.+..+.++.++++|+
T Consensus       231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (680)
T 1ziw_A          231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR  299 (680)
T ss_dssp             TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred             CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence            2             1  2366777777777666666666777777777777777766666665555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.68  E-value=4.7e-17  Score=152.30  Aligned_cols=177  Identities=20%  Similarity=0.209  Sum_probs=139.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ++++++|++|+|++|.+.+..|. +.++++|++|++++|.+ ..+|..+.  ++|++|++++|.+.+..+..+..+++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            67899999999999998766675 99999999999999855 46776665  8999999999996655555688999999


Q ss_pred             EEEeeCCCCC--CcchHHHhccCCCcEEcccccccccccCC-CCCCccEEe-------------cCCCcCCccccCcccc
Q 017788           90 RLYLSGCSNL--RRIPESIINLSKLELLHLKNCSKLLSLPE-LPCNLFSVG-------------VRRCTSLEALSSFSFL  153 (366)
Q Consensus        90 ~L~Ls~n~~~--~~lp~~i~~L~~L~~L~L~~n~~l~~lp~-l~~~L~~L~-------------l~~~~~L~~L~l~~n~  153 (366)
                      +|++++|.+.  +..|..+..+ +|+.|++++|.+. .+|. .+.+|+.|+             +.++++|+.|+++.|.
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~  228 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ  228 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred             EEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            9999999774  3566777777 8888888888543 4553 334555554             3457789999999999


Q ss_pred             cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +.+..+..+..+..++.+++++|.++. +|..+..++.|+
T Consensus       229 l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~  267 (332)
T 2ft3_A          229 IRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQ  267 (332)
T ss_dssp             CCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCC
T ss_pred             CCcCChhHhhCCCCCCEEECCCCcCee-cChhhhcCccCC
Confidence            999777789999999999999999984 454455555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=3e-17  Score=171.59  Aligned_cols=158  Identities=18%  Similarity=0.182  Sum_probs=138.7

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCC-Ccc-ccCccccCCc-------CCcEEecccccccCccch--
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACS-SLV-ETHSSIQYLS-------KLVTLDMRLCKNLNRLPS--   80 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~-~~~-~~p~~i~~L~-------~L~~L~L~~n~~~~~lp~--   80 (366)
                      ++++|++|+|++|.+.+.+|. +.++++|++|+|++|. +.+ .+|..++.++       +|++|+|++|.+. .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            789999999999999999996 9999999999999997 666 6888777766       9999999999965 8998  


Q ss_pred             hcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcC-CccccCcccccccCCC
Q 017788           81 SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTS-LEALSSFSFLFSAMSP  159 (366)
Q Consensus        81 ~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~-L~~L~l~~n~l~~~~~  159 (366)
                      .++++++|++|+|++|.+. .+| .++++++|+.|++++|.+. .+|.        .+.++++ |+.|+++.|.+.. +|
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~--------~l~~l~~~L~~L~Ls~N~L~~-lp  635 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE--------DFCAFTDQVEGLGFSHNKLKY-IP  635 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT--------TSCEECTTCCEEECCSSCCCS-CC
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH--------HHhhccccCCEEECcCCCCCc-Cc
Confidence            8999999999999999877 888 8999999999999999765 7887        6777888 9999999999985 78


Q ss_pred             CCCceEEe--CCcccCChhhhhcchH
Q 017788          160 HNDQYFNL--SDCLKLDQNELKGIAE  183 (366)
Q Consensus       160 ~~~~~l~~--l~~l~L~~n~l~~~~~  183 (366)
                      ..+..+..  |+.+++++|.+.+.+|
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             hhhhccccCCCCEEECcCCcCCCccc
Confidence            77766654  8889999999987654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=6.3e-17  Score=150.27  Aligned_cols=166  Identities=19%  Similarity=0.139  Sum_probs=133.4

Q ss_pred             CCCCCCCEEeccCCCCCCCCCC-CCCC-----CCCcEEecccCCCccccCccccCCcCCcEEecccccccCc--cchhc-
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPD-LSQA-----RNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNR--LPSSL-   82 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l-----~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~--lp~~i-   82 (366)
                      ..+++|++|+|++|++.+. |. +..+     ++|++|++++|.+.+..|..++.+++|++|+|++|++.+.  +|..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            6788999999999998766 65 6666     8999999999987777678899999999999999987665  45555 


Q ss_pred             -CCCCCCcEEEeeCCCCCC--cch-HHHhccCCCcEEcccccccccccC--C--CCCCccEEecCCC----------cCC
Q 017788           83 -CELISLQRLYLSGCSNLR--RIP-ESIINLSKLELLHLKNCSKLLSLP--E--LPCNLFSVGVRRC----------TSL  144 (366)
Q Consensus        83 -~~l~~L~~L~Ls~n~~~~--~lp-~~i~~L~~L~~L~L~~n~~l~~lp--~--l~~~L~~L~l~~~----------~~L  144 (366)
                       ..+++|++|++++|.+.+  .++ ..+.++++|+.|++++|.+.+..|  .  ...+|+.|+++++          ++|
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L  276 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL  276 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEE
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCc
Confidence             789999999999997663  233 334578899999999997766553  1  2368888887754          478


Q ss_pred             ccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788          145 EALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       145 ~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      +.|+++.|++++. |. +..+..++.+++++|++++
T Consensus       277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9999999999984 66 8899999999999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.68  E-value=1.2e-16  Score=158.51  Aligned_cols=161  Identities=15%  Similarity=0.097  Sum_probs=119.7

Q ss_pred             CCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchh-cCCCCC
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELIS   87 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~   87 (366)
                      ..+++|++|++++|++.+.+|. +.++++|++|++++|.+.+  .+|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            5677788888888877766664 7777888888888776554  45566777888888888887766656654 567778


Q ss_pred             CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEe
Q 017788           88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNL  167 (366)
Q Consensus        88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  167 (366)
                      |++|++++|.+.+..|..+.  ++|+.|++++|++ +.+|.        .+.++++|+.|+++.|.++...+..+..+..
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip~--------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  469 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPK--------QVVKLEALQELNVASNQLKSVPDGIFDRLTS  469 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCCG--------GGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccch--------hhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence            88888888777666665543  6788888888754 46665        5567889999999999999743344888999


Q ss_pred             CCcccCChhhhhcchH
Q 017788          168 SDCLKLDQNELKGIAE  183 (366)
Q Consensus       168 l~~l~L~~n~l~~~~~  183 (366)
                      ++.+++++|++.+..+
T Consensus       470 L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          470 LQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             ccEEECcCCCCcccCC
Confidence            9999999999987543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=2.4e-16  Score=139.03  Aligned_cols=154  Identities=14%  Similarity=0.106  Sum_probs=130.3

Q ss_pred             CCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788           17 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS   94 (366)
Q Consensus        17 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls   94 (366)
                      -+++++++|.+ +.+|. +  ...+++|+|++|.+.+..+ ..++.+++|++|+|++|.+.+..|..+..+++|++|+|+
T Consensus        13 ~~~l~~s~n~l-~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKL-NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCc-ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            35899999987 45664 4  3467899999997665544 458899999999999999666666689999999999999


Q ss_pred             CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCC
Q 017788           95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLD  174 (366)
Q Consensus        95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~  174 (366)
                      +|.+.+..|..+..+++|++|++++|.+.+..|.        .+.++++|+.|+++.|.+++..|..+..+..++.++++
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGND--------SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT--------SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHh--------HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            9998877788899999999999999977666666        67888999999999999999889999999999999999


Q ss_pred             hhhhhcc
Q 017788          175 QNELKGI  181 (366)
Q Consensus       175 ~n~l~~~  181 (366)
                      +|++...
T Consensus       162 ~N~l~c~  168 (220)
T 2v70_A          162 ANPFNCN  168 (220)
T ss_dssp             SCCEECS
T ss_pred             CcCCcCC
Confidence            9998764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=1e-17  Score=167.68  Aligned_cols=173  Identities=20%  Similarity=0.153  Sum_probs=120.9

Q ss_pred             CCCCCCCEEeccCCCCCCCC--CC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCC
Q 017788           12 KNLVNLKEIDLSYSRQLKKL--PD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELIS   87 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~--p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~   87 (366)
                      ..+++|++|++++|.+.+..  |. +.++++|++|++++|... .++..+..+++|++|++++|.+.+..| ..+..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            35667777777777664332  32 566777777777777443 344447777777777777777555544 35667778


Q ss_pred             CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccc-cccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE
Q 017788           88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKL-LSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN  166 (366)
Q Consensus        88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l-~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  166 (366)
                      |++|++++|.+.+..|..+.++++|+.|++++|.+. +.+|.        .+.++++|+.|+++.|.+++..|..+..+.
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--------IFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--------CCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh--------hhhcccCCCEEECCCCccccCChhhhhccc
Confidence            888888887777667777777888888888887665 35665        566777888888888888776677777778


Q ss_pred             eCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          167 LSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       167 ~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .++.+++++|.++++.+..+.++++|+
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            888888888888777666665555553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=1.9e-16  Score=139.62  Aligned_cols=152  Identities=17%  Similarity=0.135  Sum_probs=109.1

Q ss_pred             CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788           18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC   96 (366)
Q Consensus        18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n   96 (366)
                      +.++++++.+ ..+|. +.  ++|+.|++++|.+....+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGL-TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCC-SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCc-CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            5677777766 44554 43  57888888887665555557777888888888888766666777778888888888887


Q ss_pred             CCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChh
Q 017788           97 SNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN  176 (366)
Q Consensus        97 ~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n  176 (366)
                      .+....+..+.++++|+.|+|++|++....|.        .+.++++|+.|+++.|.+++..+..+..+..++.+++++|
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVD--------AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHH--------HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            76644444467788888888888765554454        5667778888888888887766666777777888888888


Q ss_pred             hhhc
Q 017788          177 ELKG  180 (366)
Q Consensus       177 ~l~~  180 (366)
                      ++..
T Consensus       163 ~~~c  166 (220)
T 2v9t_B          163 PFIC  166 (220)
T ss_dssp             CEEC
T ss_pred             CcCC
Confidence            7754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.67  E-value=2e-16  Score=161.87  Aligned_cols=183  Identities=17%  Similarity=0.137  Sum_probs=132.2

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEeccccccc--CccchhcCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNL--NRLPSSLCELI   86 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~--~~lp~~i~~l~   86 (366)
                      +..+++|++|+|++|.+.+.+|.  +.++++|++|++++|......+..+..+++|+.|++++|.+.  +.+|..+..++
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~  480 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR  480 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred             hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence            56788999999999988766662  888899999999988776666667777788888888777643  46677777777


Q ss_pred             CCcEEEeeCCCCCCcchHHHhccCCCcEEccccccccccc----CC-------CCCCccEEe-------------cCCCc
Q 017788           87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSL----PE-------LPCNLFSVG-------------VRRCT  142 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~l----p~-------l~~~L~~L~-------------l~~~~  142 (366)
                      +|++|++++|.+.+..|..+.++++|+.|++++|.+....    |.       ...+|+.|+             +.+++
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            8888888777766655566777777777777777543321    11       113344443             34567


Q ss_pred             CCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHH-HHHhhh
Q 017788          143 SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQ-KIQQKA  193 (366)
Q Consensus       143 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~-~l~~L~  193 (366)
                      +|+.|+++.|.++...+..+..+..++.+++++|.++++.+..+. .++.|+
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  612 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT  612 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence            788888888888876666677888888888888888888877776 555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.66  E-value=1.6e-16  Score=157.41  Aligned_cols=86  Identities=17%  Similarity=0.063  Sum_probs=62.9

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L   88 (366)
                      ++++++|++|+|++|++.+..|+ |+++++|++|+|++|.+. .+|..  .+++|++|+|++|.+.+ .+|..++++++|
T Consensus        41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L  117 (520)
T 2z7x_B           41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL  117 (520)
T ss_dssp             HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred             ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcc
Confidence            56777888888888887665564 788888888888887544 56655  67888888888887655 467777777777


Q ss_pred             cEEEeeCCCCC
Q 017788           89 QRLYLSGCSNL   99 (366)
Q Consensus        89 ~~L~Ls~n~~~   99 (366)
                      ++|++++|.+.
T Consensus       118 ~~L~L~~n~l~  128 (520)
T 2z7x_B          118 KFLGLSTTHLE  128 (520)
T ss_dssp             CEEEEEESSCC
T ss_pred             eEEEecCcccc
Confidence            77777776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=2e-17  Score=165.51  Aligned_cols=164  Identities=20%  Similarity=0.193  Sum_probs=144.6

Q ss_pred             CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      .++++|++|++++|.+.+..+.+..+++|++|++++|...+..| ..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  449 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  449 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence            36789999999999986554458999999999999997766555 46889999999999999988888999999999999


Q ss_pred             EEeeCCCCC-CcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           91 LYLSGCSNL-RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        91 L~Ls~n~~~-~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      |++++|.+. +.+|..+..+++|+.|++++|++.+..|.        .+.++++|+.|+++.|.+++..+..+..+..++
T Consensus       450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--------AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EECcCCcCccccchhhhhcccCCCEEECCCCccccCChh--------hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            999999876 57899999999999999999987776677        678899999999999999997788889999999


Q ss_pred             cccCChhhhhcchH
Q 017788          170 CLKLDQNELKGIAE  183 (366)
Q Consensus       170 ~l~L~~n~l~~~~~  183 (366)
                      .+++++|++.+..|
T Consensus       522 ~L~l~~N~~~~~~~  535 (570)
T 2z63_A          522 KIWLHTNPWDCSCP  535 (570)
T ss_dssp             EEECCSSCBCCCTT
T ss_pred             EEEecCCcccCCCc
Confidence            99999999987654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=2.8e-16  Score=135.98  Aligned_cols=134  Identities=17%  Similarity=0.225  Sum_probs=114.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +..+++|++|++++|.+ ..++.+..+++|++|++++|.+....+..++.+++|++|++++|.+....|..+..+++|++
T Consensus        62 l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  140 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS  140 (197)
T ss_dssp             GGGCTTCSEEEEESCCC-SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred             HhcCCCCCEEEccCCCC-CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence            56789999999999965 55667999999999999999887778889999999999999999988888999999999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      |++++|...+.+| .+..+++|+.|++++|.+ ..++         .+.++++|+.|+++.|.+.+
T Consensus       141 L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~---------~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          141 IDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR---------GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             EECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT---------TGGGCSSCCEEEECBC----
T ss_pred             EEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH---------HhccCCCCCEEEeeCcccCC
Confidence            9999998566777 699999999999999964 4444         46778999999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=5.3e-16  Score=136.78  Aligned_cols=135  Identities=19%  Similarity=0.072  Sum_probs=115.4

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .++|++|+|++|++.+..+. |..+++|++|+|++|.+.+..|..+.++++|++|+|++|.+....+..+..+++|++|+
T Consensus        31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            36899999999999665554 99999999999999988777789999999999999999995544344567899999999


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      |++|.+.+..|..+..+++|+.|+|++|.+.+..+.        .+..+++|+.|+++.|.+..
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG--------TFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--------TTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH--------HHhCCCCCCEEEeCCCCcCC
Confidence            999999888889999999999999999976544444        46778999999999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.66  E-value=7.3e-17  Score=152.28  Aligned_cols=171  Identities=15%  Similarity=0.126  Sum_probs=102.2

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCc--cccCCcCCcEEecccccccCcc-chhcCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS--SIQYLSKLVTLDMRLCKNLNRL-PSSLCELI   86 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~--~i~~L~~L~~L~L~~n~~~~~l-p~~i~~l~   86 (366)
                      +.++++|++|+|++|++.+..+. +.++++|++|++++|.+. .+|.  .++.+++|++|++++|...+.+ |..+..++
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  174 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT  174 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence            34556666777766666433333 666666666666666443 3443  5566666666666666433333 34555666


Q ss_pred             CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCC----CCCCccEEe-------------------------
Q 017788           87 SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE----LPCNLFSVG-------------------------  137 (366)
Q Consensus        87 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~----l~~~L~~L~-------------------------  137 (366)
                      +|++|++++|.+.+..|..+.++++|++|++++|.+ +.+|.    ..++|+.|+                         
T Consensus       175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~  253 (353)
T 2z80_A          175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK  253 (353)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE
T ss_pred             CCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhc
Confidence            666666666655554455555555555555554432 22221    012222222                         


Q ss_pred             -------------------cCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchH
Q 017788          138 -------------------VRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE  183 (366)
Q Consensus       138 -------------------l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~  183 (366)
                                         +.++++|+.|+++.|.++...+..++.+..++.+++++|++.+..|
T Consensus       254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                               2346789999999999997444446889999999999999988654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=1.4e-16  Score=147.67  Aligned_cols=151  Identities=21%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .+++|++|+|++|.+.+. +.+..+++|++|++++|.+. .++ .+..+++|++|++++|.+ ..+|. +..+++|++|+
T Consensus        61 ~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~  135 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLY  135 (308)
T ss_dssp             GCTTCCEEECCSSCCCCC-GGGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEE
T ss_pred             ccCCCCEEEccCCcCCCC-hhHccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEE
Confidence            445555555555544322 22555555555555555322 222 345555555555555552 22332 44555555555


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK  172 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~  172 (366)
                      +++|.+.+ ++. +..+++|+.|++++|.+ ..++         .+.++++|+.|+++.|.+++..+  +..+..++.++
T Consensus       136 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~---------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  201 (308)
T 1h6u_A          136 LDLNQITN-ISP-LAGLTNLQYLSIGNAQV-SDLT---------PLANLSKLTTLKADDNKISDISP--LASLPNLIEVH  201 (308)
T ss_dssp             CCSSCCCC-CGG-GGGCTTCCEEECCSSCC-CCCG---------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             CCCCccCc-Ccc-ccCCCCccEEEccCCcC-CCCh---------hhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEE
Confidence            55554332 222 45555555555555532 2222         14456677777777777766332  56677777777


Q ss_pred             CChhhhhcch
Q 017788          173 LDQNELKGIA  182 (366)
Q Consensus       173 L~~n~l~~~~  182 (366)
                      +++|.+++..
T Consensus       202 L~~N~l~~~~  211 (308)
T 1h6u_A          202 LKNNQISDVS  211 (308)
T ss_dssp             CTTSCCCBCG
T ss_pred             ccCCccCccc
Confidence            7777777655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.66  E-value=5e-16  Score=136.94  Aligned_cols=135  Identities=16%  Similarity=0.070  Sum_probs=118.7

Q ss_pred             CCCCCEEeccCCCCCCCCC-C-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           14 LVNLKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      ...+++|+|++|.+.+..| . |.++++|++|+|++|.+.+..+..++.+++|++|+|++|.+.+..|..+..+++|++|
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            3468999999999976655 3 8999999999999998776666789999999999999999777777779999999999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      +|++|.+.+..|..+..+++|+.|+|++|.+.+..|.        .+..+++|+.|+++.|.+..
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG--------AFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT--------TTTTCTTCCEEECCSCCEEC
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH--------HhcCCCCCCEEEecCcCCcC
Confidence            9999999888899999999999999999977666676        67788999999999998765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.66  E-value=9.2e-16  Score=136.07  Aligned_cols=153  Identities=16%  Similarity=0.041  Sum_probs=114.0

Q ss_pred             CCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788           17 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG   95 (366)
Q Consensus        17 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~   95 (366)
                      .+.++.+++.+ +.+|. +.  ++|++|+|++|.+.+..|..++.+++|++|+|++|.+....+..+..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45677777766 45554 43  7788888888877766677788888888888888885333334567888888888888


Q ss_pred             CCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCCh
Q 017788           96 CSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQ  175 (366)
Q Consensus        96 n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~  175 (366)
                      |.+....+..+..+++|+.|++++|++ ..+|.        .+.++++|+.|+++.|.++...+..+..+..++.+++++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKL-TELPR--------GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC-CSCCT--------TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcc-cccCc--------ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            877655555677888888888888754 46666        567778888888888888876666777888888888888


Q ss_pred             hhhhcc
Q 017788          176 NELKGI  181 (366)
Q Consensus       176 n~l~~~  181 (366)
                      |++...
T Consensus       169 N~~~c~  174 (229)
T 3e6j_A          169 NPWDCE  174 (229)
T ss_dssp             SCBCTT
T ss_pred             CCccCC
Confidence            887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.66  E-value=4.2e-16  Score=138.25  Aligned_cols=141  Identities=19%  Similarity=0.166  Sum_probs=116.0

Q ss_pred             ceeccCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCC
Q 017788            7 RFLILKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL   85 (366)
Q Consensus         7 ~~l~l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l   85 (366)
                      ..+...-.++|++|+|++|.+.+..|. |.++++|++|+|++|.+....+..+..+++|++|+|++|.+.+..+..+..+
T Consensus        32 ~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  111 (229)
T 3e6j_A           32 ASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL  111 (229)
T ss_dssp             SSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence            333333457899999999999877776 9999999999999997654444567999999999999999665555567899


Q ss_pred             CCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           86 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        86 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      ++|++|+|++|.+. .+|..+..+++|++|++++|++. .+|..       .+..+++|+.|+++.|.+..
T Consensus       112 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~-------~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG-------AFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTT-------TTTTCTTCCEEECTTSCBCT
T ss_pred             hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHH-------HHhCCCCCCEEEeeCCCccC
Confidence            99999999999766 88999999999999999999654 55431       46788999999999998765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.66  E-value=1.2e-16  Score=148.13  Aligned_cols=158  Identities=16%  Similarity=0.088  Sum_probs=120.7

Q ss_pred             CCCCCCCEEeccCCCCCCCCCC-----CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCc--cch--hc
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPD-----LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNR--LPS--SL   82 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~--lp~--~i   82 (366)
                      .++++|++|+|++|.+.+..+.     +..+++|++|+|++|.+.+..+..++.+++|++|+|++|++.+.  ++.  .+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            6788999999999998765552     45788999999999988777778889999999999999986542  332  23


Q ss_pred             CCCCCCcEEEeeCCCCCCcchH----HHhccCCCcEEcccccccccccCCCCCCccEEecCCC---cCCccccCcccccc
Q 017788           83 CELISLQRLYLSGCSNLRRIPE----SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---TSLEALSSFSFLFS  155 (366)
Q Consensus        83 ~~l~~L~~L~Ls~n~~~~~lp~----~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~---~~L~~L~l~~n~l~  155 (366)
                      ..+++|++|+|++|.+. .+|.    .++.+++|++|++++|.+.+..|.        .+..+   ++|+.|+++.|.++
T Consensus       194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP--------SAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS--------CCSSCCCCTTCCCEECCSSCCC
T ss_pred             hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchh--------hHHhccCcCcCCEEECCCCCCC
Confidence            58899999999998764 4444    257889999999999977666676        34444   57888888888887


Q ss_pred             cCCCCCCceEEeCCcccCChhhhhcc
Q 017788          156 AMSPHNDQYFNLSDCLKLDQNELKGI  181 (366)
Q Consensus       156 ~~~~~~~~~l~~l~~l~L~~n~l~~~  181 (366)
                      . +|..+.  ..++.++|++|.++++
T Consensus       265 ~-lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          265 Q-VPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             S-CCSCCC--SCCSCEECCSCCCCSC
T ss_pred             c-hhhhhc--CCCCEEECCCCcCCCC
Confidence            5 555543  6778888888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.66  E-value=5.5e-17  Score=163.89  Aligned_cols=144  Identities=22%  Similarity=0.113  Sum_probs=109.5

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      +++++|||++|++.+..|. |.++++|++|+|++|.+.+..|.+|+++++|++|+|++|++.+..+..|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            3789999999988655554 899999999999998766555667899999999999999854444456788999999999


Q ss_pred             eCCCCCCcchHHHhccCCCcEEccccccccc-ccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLL-SLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN  166 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~-~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  166 (366)
                      ++|.+.+..+..|+++++|++|++++|.+.. .+|.        .+.++++|+.|+++.|.+++..+..+..+.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG--------GGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCch--------hhccchhhhhhcccCccccccccccccchh
Confidence            9987776555568899999999999986543 3454        456677777888877777765555554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=166.19  Aligned_cols=172  Identities=16%  Similarity=0.055  Sum_probs=132.1

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcccc-CccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVET-HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      -.++|++|+|++|.+.+..|. |.++++|++|+|++|...+.+ |.+++++++|++|+|++|.+.+..|..|+++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            468899999999999776665 999999999999999777666 788999999999999999987778999999999999


Q ss_pred             EEeeCCCCCCcchHH--HhccCCCcEEcccccccccccC-C---CCCCccEEecCCC---------------cCCccccC
Q 017788           91 LYLSGCSNLRRIPES--IINLSKLELLHLKNCSKLLSLP-E---LPCNLFSVGVRRC---------------TSLEALSS  149 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~--i~~L~~L~~L~L~~n~~l~~lp-~---l~~~L~~L~l~~~---------------~~L~~L~l  149 (366)
                      |+|++|.+.+.+|..  ++++++|++|++++|.+.+..+ .   ...+|+.|++++.               ++|+.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            999999888777766  8999999999999997755443 2   1245555555432               45566666


Q ss_pred             cccccccCCCCCCceEEe------CCcccCChhhhhcchHH
Q 017788          150 FSFLFSAMSPHNDQYFNL------SDCLKLDQNELKGIAED  184 (366)
Q Consensus       150 ~~n~l~~~~~~~~~~l~~------l~~l~L~~n~l~~~~~~  184 (366)
                      +.|.+.+..|..++.+..      ++.+++++|.+.+..+.
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  222 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG  222 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence            666665555444443333      66677777766554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=1.1e-16  Score=151.65  Aligned_cols=162  Identities=17%  Similarity=0.078  Sum_probs=120.6

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CC-CCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LS-QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~-~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      ...++.|+|++|++.+..+. +. ++++|++|+|++|.+....+..+..+++|++|+|++|++....+..|..+++|++|
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            44688999999988665555 66 88999999999987766666778899999999999988555555567889999999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEe--CC
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNL--SD  169 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--l~  169 (366)
                      +|++|.+....|..|.++++|+.|+|++|.+ ..+|...  +.  .+.++++|+.|+++.|.++...+..+..+..  ++
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~--~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVEL--IK--DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGG--TC------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHH--hc--CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence            9999988777788888999999999999854 4555410  00  1156788889999999888754445555554  36


Q ss_pred             cccCChhhhhc
Q 017788          170 CLKLDQNELKG  180 (366)
Q Consensus       170 ~l~L~~n~l~~  180 (366)
                      .++|++|++..
T Consensus       193 ~l~l~~N~~~C  203 (361)
T 2xot_A          193 GLYLHNNPLEC  203 (361)
T ss_dssp             TEECCSSCEEC
T ss_pred             eEEecCCCccC
Confidence            78888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.65  E-value=5e-17  Score=144.94  Aligned_cols=165  Identities=14%  Similarity=0.071  Sum_probs=132.7

Q ss_pred             cCCCCCCCEEeccCCC-CCCCCCC-CCCCCCCcEEeccc-CCCccccCccccCCcCCcEEecccccccCccchhcCCCCC
Q 017788           11 LKNLVNLKEIDLSYSR-QLKKLPD-LSQARNLENLLLKA-CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELIS   87 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~-~~~~~p~-l~~l~~L~~L~L~~-n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~   87 (366)
                      ++++++|++|++++|+ +....+. |.++++|++|++++ |.+....+..+..+++|++|++++|.+ ..+|. +..+++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~  128 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYS  128 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCB
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccc
Confidence            6789999999999997 6443343 89999999999998 765554456789999999999999985 45887 888888


Q ss_pred             Cc---EEEeeCC-CCCCcchHHHhccCCCc-EEcccccccccccCCCCCCccEEecCCCcCCccccCcccc-cccCCCCC
Q 017788           88 LQ---RLYLSGC-SNLRRIPESIINLSKLE-LLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL-FSAMSPHN  161 (366)
Q Consensus        88 L~---~L~Ls~n-~~~~~lp~~i~~L~~L~-~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~-l~~~~~~~  161 (366)
                      |+   +|++++| .+....+..+.++++|+ .|++++|++ +.+|.        .+...++|+.|+++.|. ++...+..
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~--------~~~~~~~L~~L~L~~n~~l~~i~~~~  199 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQG--------YAFNGTKLDAVYLNKNKYLTVIDKDA  199 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECT--------TTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCH--------hhcCCCCCCEEEcCCCCCcccCCHHH
Confidence            88   9999999 65544445689999999 999999865 47775        33333789999999995 88867778


Q ss_pred             CceE-EeCCcccCChhhhhcchHHHH
Q 017788          162 DQYF-NLSDCLKLDQNELKGIAEDAL  186 (366)
Q Consensus       162 ~~~l-~~l~~l~L~~n~l~~~~~~~~  186 (366)
                      +..+ ..++.+++++|.++++.+..+
T Consensus       200 ~~~l~~~L~~L~l~~N~l~~l~~~~~  225 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQTSVTALPSKGL  225 (239)
T ss_dssp             TTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred             hhccccCCcEEECCCCccccCChhHh
Confidence            8888 999999999999887655433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.65  E-value=9.9e-17  Score=149.27  Aligned_cols=172  Identities=17%  Similarity=0.118  Sum_probs=100.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC------------------CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD------------------LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLC   72 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~------------------l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n   72 (366)
                      +..+++|++|+|++|.+.+ ++.                  ...+++|++|++++|.+.+..+..++.+++|++|+|++|
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred             hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence            3456677777777766532 111                  012334444444444443333334444555555555555


Q ss_pred             cccCccchhcC-CCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcc
Q 017788           73 KNLNRLPSSLC-ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS  151 (366)
Q Consensus        73 ~~~~~lp~~i~-~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~  151 (366)
                      .+.+..|..+. .+++|++|++++|.+.. +|. ...+++|+.|++++|.+ ..+|.        .+..+++|+.|+++.
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l-~~l~~--------~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKL-AFMGP--------EFQSAAGVTWISLRN  223 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCC-CEECG--------GGGGGTTCSEEECTT
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcC-Ccchh--------hhcccCcccEEECcC
Confidence            44333333332 34555555555544332 221 12344555555555432 23333        355678999999999


Q ss_pred             cccccCCCCCCceEEeCCcccCChhhhh-cchHHHHHHHHhhhhh
Q 017788          152 FLFSAMSPHNDQYFNLSDCLKLDQNELK-GIAEDALQKIQQKATS  195 (366)
Q Consensus       152 n~l~~~~~~~~~~l~~l~~l~L~~n~l~-~~~~~~~~~l~~L~~~  195 (366)
                      |.++. +|..+..+..++.+++++|++. +.++..+..++.++..
T Consensus       224 N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          224 NKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             SCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             Ccccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence            99997 7778889999999999999998 7778888877777644

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.65  E-value=2.3e-16  Score=158.08  Aligned_cols=55  Identities=15%  Similarity=0.064  Sum_probs=37.2

Q ss_pred             CCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcch--HHHHHHHHhhh
Q 017788          139 RRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIA--EDALQKIQQKA  193 (366)
Q Consensus       139 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~--~~~~~~l~~L~  193 (366)
                      ..+++|+.|+++.|.+++..|..++.+..++.+++++|.++++.  |..+.++++|+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence            44567777777777777767777777777777888877777633  34455555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.64  E-value=5.6e-16  Score=155.25  Aligned_cols=161  Identities=16%  Similarity=0.124  Sum_probs=127.5

Q ss_pred             CCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchh-cCCCCC
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELIS   87 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~   87 (366)
                      +.+++|++|++++|++.+..|. +.++++|++|++++|.+.+  .+|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            6778888999998888776775 8888899999998886554  34566888889999999988876656654 667888


Q ss_pred             CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEe
Q 017788           88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNL  167 (366)
Q Consensus        88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  167 (366)
                      |++|++++|.+.+..|..+.  ++|+.|++++|+ ++.+|.        .+.++++|+.|+++.|.++...+..+..+..
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~--------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  498 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPK--------DVTHLQALQELNVASNQLKSVPDGVFDRLTS  498 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCT--------TTTSSCCCSEEECCSSCCCCCCTTSTTTCTT
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccCh--------hhcCCCCCCEEECCCCCCCCCCHHHHhcCCC
Confidence            99999998887766665443  688899998884 457776        5668899999999999999744444889999


Q ss_pred             CCcccCChhhhhcchH
Q 017788          168 SDCLKLDQNELKGIAE  183 (366)
Q Consensus       168 l~~l~L~~n~l~~~~~  183 (366)
                      ++.+++++|++.+..+
T Consensus       499 L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          499 LQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCCEECCSCCBCCCHH
T ss_pred             CCEEEecCCCcCCCcc
Confidence            9999999999987543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=3e-16  Score=156.42  Aligned_cols=176  Identities=19%  Similarity=0.113  Sum_probs=143.1

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~L   88 (366)
                      ++++++|++|+|++|++.+..|+ |+++++|++|+|++|.+.+..|..++.+++|++|++++|.+.+ ..|..++++++|
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            67899999999999999776665 9999999999999997776666679999999999999999665 467789999999


Q ss_pred             cEEEeeCCCCCCcch-HHHhccCCCcEEcccccccccccCCCC---CCccEEecC-------------CCcCCccccCcc
Q 017788           89 QRLYLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPELP---CNLFSVGVR-------------RCTSLEALSSFS  151 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~l~---~~L~~L~l~-------------~~~~L~~L~l~~  151 (366)
                      ++|++++|...+.+| ..+.++++|++|++++|.+.+..|...   .+|+.|++.             .+++|+.|+++.
T Consensus       126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  205 (549)
T 2z81_A          126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD  205 (549)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred             cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence            999999998677776 579999999999999998877777654   345566543             478999999999


Q ss_pred             cccccCC--C-CCCceEEeCCcccCChhhhhcchHHHH
Q 017788          152 FLFSAMS--P-HNDQYFNLSDCLKLDQNELKGIAEDAL  186 (366)
Q Consensus       152 n~l~~~~--~-~~~~~l~~l~~l~L~~n~l~~~~~~~~  186 (366)
                      |.+++..  + .....+..++.+++++|.+.+..+..+
T Consensus       206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             CccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            9988732  1 223456678888888888876655554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=1.1e-15  Score=133.16  Aligned_cols=141  Identities=14%  Similarity=0.096  Sum_probs=118.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ++++++|++|++++|++.+..+. +.++++|++|++++|.+.+..+..++.+++|++|+|++|.+.+..+..+..+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  127 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK  127 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence            56889999999999998655555 79999999999999977655555679999999999999996655555678999999


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEE
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFN  166 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  166 (366)
                      +|++++|.+.+..+..+..+++|+.|++++|...               ..|++|+.|++..|.+++.+|..++.+.
T Consensus       128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             EEECCCCccceeCHHHhccCCCccEEEecCCCee---------------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence            9999999887666666899999999999999543               3466799999999999998998877655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=1.6e-16  Score=156.72  Aligned_cols=171  Identities=16%  Similarity=0.109  Sum_probs=100.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-----------------CCCCCCCcEEecccCCCccccCccccCCcCCcEEeccccc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-----------------LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCK   73 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-----------------l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~   73 (366)
                      +..+++|++|+|++|.+.+..+.                 ...+++|+.|+|++|.+.+..|..++.+++|++|+|++|.
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred             cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence            34566666666666655321111                 0123445555555554444444455555555555555555


Q ss_pred             ccCccchhcC-CCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccc
Q 017788           74 NLNRLPSSLC-ELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF  152 (366)
Q Consensus        74 ~~~~lp~~i~-~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n  152 (366)
                      +.+..|..+. .+++|++|+|++|.+.+. |. ...+++|+.|+|++|.+ ..+|.        .+..+++|+.|+++.|
T Consensus       156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l-~~~~~--------~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKL-AFMGP--------EFQSAAGVTWISLRNN  224 (487)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCC-CEECG--------GGGGGTTCSEEECTTS
T ss_pred             CCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCC-CCCCH--------hHcCCCCccEEEecCC
Confidence            4444444443 455555555555543322 21 22355555555555533 23333        3456788999999999


Q ss_pred             ccccCCCCCCceEEeCCcccCChhhhh-cchHHHHHHHHhhh
Q 017788          153 LFSAMSPHNDQYFNLSDCLKLDQNELK-GIAEDALQKIQQKA  193 (366)
Q Consensus       153 ~l~~~~~~~~~~l~~l~~l~L~~n~l~-~~~~~~~~~l~~L~  193 (366)
                      .+++ +|..+..+..+..+++++|++. +.+|..+..++.+.
T Consensus       225 ~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          225 KLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             CCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             cCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence            9988 7777888889999999999987 56677776666665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=4.2e-16  Score=144.52  Aligned_cols=165  Identities=15%  Similarity=0.066  Sum_probs=130.7

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-C--CCCCCCcEEecccCCCccccC----ccccCCcCCcEEecccccccCccchhcCCC
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-L--SQARNLENLLLKACSSLVETH----SSIQYLSKLVTLDMRLCKNLNRLPSSLCEL   85 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l--~~l~~L~~L~L~~n~~~~~~p----~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l   85 (366)
                      .+++|++|++++|.+.+..|. +  ..+++|++|+|++|.+.+..+    ..+..+++|++|+|++|.+.+..|..++.+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            356799999999999888886 6  899999999999998776544    345679999999999999877777889999


Q ss_pred             CCCcEEEeeCCCCCCc--ch--HHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCC
Q 017788           86 ISLQRLYLSGCSNLRR--IP--ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHN  161 (366)
Q Consensus        86 ~~L~~L~Ls~n~~~~~--lp--~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~  161 (366)
                      ++|++|+|++|.+.+.  ++  ..++.+++|++|++++|.+ +.+|..+..    .+.++++|+.|+++.|.+.+..|..
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~----l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAA----LAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHH----HHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHH----HHhcCCCCCEEECCCCCCCccchhh
Confidence            9999999999976542  22  2236889999999999965 444431100    1356789999999999999976777


Q ss_pred             CceE---EeCCcccCChhhhhcch
Q 017788          162 DQYF---NLSDCLKLDQNELKGIA  182 (366)
Q Consensus       162 ~~~l---~~l~~l~L~~n~l~~~~  182 (366)
                      +..+   ..++.++|++|.++.+.
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HHhccCcCcCCEEECCCCCCCchh
Confidence            7666   58999999999998553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.62  E-value=7e-16  Score=150.84  Aligned_cols=160  Identities=14%  Similarity=0.060  Sum_probs=106.1

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +..+++|++|++++|++.+ +| ++.+++|+.|++++|.+.+ +  .++.+++|++|++++|++.+ +|  ++.+++|+.
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l~-l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~  237 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-LD-VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY  237 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-CC-CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred             cccCCcCCEEECCCCccce-ec-cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence            4455666777776666643 34 5556666666666654433 2  25555556666666555333 44  445555555


Q ss_pred             EEeeCCCCCCcchHH-----------------------------HhccCCCcEEcccccccccccCCCCCCccEEecCCC
Q 017788           91 LYLSGCSNLRRIPES-----------------------------IINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC  141 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~-----------------------------i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~  141 (366)
                      |++++|.+.+..+..                             ++.+++|+.|++++|..++.+|....+++.++++++
T Consensus       238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~  317 (457)
T 3bz5_A          238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN  317 (457)
T ss_dssp             EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred             EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence            555555443322211                             245577777778887777777766677888889999


Q ss_pred             cCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcc
Q 017788          142 TSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI  181 (366)
Q Consensus       142 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~  181 (366)
                      ++|+.|+++.|.+++ ++  ++.+..++.+++++|.++++
T Consensus       318 ~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          318 PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCBC
T ss_pred             ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCCc
Confidence            999999999999998 43  78889999999999999874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=9.2e-16  Score=142.20  Aligned_cols=151  Identities=19%  Similarity=0.198  Sum_probs=126.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +.++++|++|+|++|.+. .++.+..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++. +..+++|++
T Consensus        81 ~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~  155 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQIT-DVT-PLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQY  155 (308)
T ss_dssp             GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCE
T ss_pred             HccCCCCCEEEccCCcCC-CchhhcCCCCCCEEECCCCCCC-Cch-hhcCCCCCCEEECCCCccC-cCcc-ccCCCCccE
Confidence            567899999999999974 5677999999999999999654 455 4899999999999999854 4444 889999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+.. ++. +..+++|+.|++++|.+ ..++.         +..+++|+.|+++.|.+.+..  .+..+..++.
T Consensus       156 L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~---------l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~  221 (308)
T 1h6u_A          156 LSIGNAQVSD-LTP-LANLSKLTTLKADDNKI-SDISP---------LASLPNLIEVHLKNNQISDVS--PLANTSNLFI  221 (308)
T ss_dssp             EECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGG---------GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred             EEccCCcCCC-Chh-hcCCCCCCEEECCCCcc-CcChh---------hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence            9999997664 554 89999999999999955 44442         677899999999999998844  3778889999


Q ss_pred             ccCChhhhhc
Q 017788          171 LKLDQNELKG  180 (366)
Q Consensus       171 l~L~~n~l~~  180 (366)
                      +++++|++++
T Consensus       222 L~l~~N~i~~  231 (308)
T 1h6u_A          222 VTLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEccCCeeec
Confidence            9999998875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=3.3e-15  Score=140.25  Aligned_cols=174  Identities=20%  Similarity=0.202  Sum_probs=98.9

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +.++++|++|++++|.+. .++.+..+++|++|++++|.....++ .+..+++|++|++++|.+.. ++. +..+++|++
T Consensus       106 ~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~  181 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYS  181 (347)
T ss_dssp             GTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSE
T ss_pred             HcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCE
Confidence            445667777777777663 33346666666666666664444333 24555555555555554222 221 334444444


Q ss_pred             EEeeCC----------------------CCCCcchHHHhccCCCcEEcccccccccccCC--CCCCccEEecC-------
Q 017788           91 LYLSGC----------------------SNLRRIPESIINLSKLELLHLKNCSKLLSLPE--LPCNLFSVGVR-------  139 (366)
Q Consensus        91 L~Ls~n----------------------~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~--l~~~L~~L~l~-------  139 (366)
                      |++++|                      .+....+  +..+++|+.|++++|.+. .++.  ..++|+.|+++       
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCCccCCC
Confidence            444444                      3332222  556666666666666432 2222  12445555543       


Q ss_pred             ----CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          140 ----RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       140 ----~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                          .+++|+.|+++.|.++. + ..+..+..++.+++++|.+.+..+..+.+++.|+
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence                35677777777777766 3 3466777788888888888877777777666664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=4.8e-16  Score=142.98  Aligned_cols=152  Identities=23%  Similarity=0.212  Sum_probs=126.3

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|++|++++|.+ ..++.+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+ ..+|. +..+++|++
T Consensus        42 ~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKS  116 (291)
T ss_dssp             HHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCE
T ss_pred             hhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcC-CCChh-hccCCCCCE
Confidence            45688899999999987 456779999999999999996654 444 89999999999999984 44554 889999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+.. + +.+..+++|+.|++++|.+. .++         .+.++++|+.|+++.|.+++..+  +..+..|+.
T Consensus       117 L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~---------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DIT---------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CCG---------GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cch---------hhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence            9999997665 4 46889999999999999653 443         57788999999999999988444  788899999


Q ss_pred             ccCChhhhhcc
Q 017788          171 LKLDQNELKGI  181 (366)
Q Consensus       171 l~L~~n~l~~~  181 (366)
                      +++++|.++++
T Consensus       183 L~L~~N~i~~l  193 (291)
T 1h6t_A          183 LYLSKNHISDL  193 (291)
T ss_dssp             EECCSSCCCBC
T ss_pred             EECCCCcCCCC
Confidence            99999998875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=1.3e-15  Score=140.18  Aligned_cols=151  Identities=22%  Similarity=0.202  Sum_probs=125.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|++|+|++|++.+..+ +.++++|++|++++|.+. .++ .++.+++|++|++++|.+.. + +.+..+++|++
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~  138 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLES  138 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCE
T ss_pred             HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCE
Confidence            5678999999999999865444 999999999999999654 444 59999999999999998544 4 46789999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+.+.  ..+..+++|+.|++++|.+ ..++         .+.++++|+.|+++.|.++. ++ .+..+..|+.
T Consensus       139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l-~~~~---------~l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~  204 (291)
T 1h6t_A          139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQI-SDIV---------PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV  204 (291)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCC-CCCG---------GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred             EEccCCcCCcc--hhhccCCCCCEEEccCCcc-ccch---------hhcCCCccCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            99999977654  5789999999999999965 3443         26778999999999999988 44 3788889999


Q ss_pred             ccCChhhhhc
Q 017788          171 LKLDQNELKG  180 (366)
Q Consensus       171 l~L~~n~l~~  180 (366)
                      +++++|++..
T Consensus       205 L~l~~n~i~~  214 (291)
T 1h6t_A          205 LELFSQECLN  214 (291)
T ss_dssp             EEEEEEEEEC
T ss_pred             EECcCCcccC
Confidence            9999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=1.6e-15  Score=143.64  Aligned_cols=165  Identities=18%  Similarity=0.036  Sum_probs=135.5

Q ss_pred             CCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCcccc-CCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788           17 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQ-YLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS   94 (366)
Q Consensus        17 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~-~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls   94 (366)
                      -++++++++.+ ..+|. +.  +.++.|+|++|.+.+..+..+. .+++|++|+|++|.+.+..|..+..+++|++|+|+
T Consensus        20 ~~~l~c~~~~l-~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQL-PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCC-SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCc-CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            36899999887 45664 43  4689999999977666666676 99999999999999666666789999999999999


Q ss_pred             CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCC---ceEEeCCcc
Q 017788           95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHND---QYFNLSDCL  171 (366)
Q Consensus        95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~l~~l  171 (366)
                      +|.+....+..|.++++|+.|+|++|.+....|.        .+.++++|+.|+++.|.++...+..+   ..+..|+.|
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN--------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH--------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence            9987766666799999999999999977655565        67888999999999999998544444   568899999


Q ss_pred             cCChhhhhcchHHHHHHHHhh
Q 017788          172 KLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       172 ~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      +|++|.++++.+..+..++.+
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~  189 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAW  189 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHH
T ss_pred             ECCCCCCCccCHHHhhhccHh
Confidence            999999999888888777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=3.1e-16  Score=154.55  Aligned_cols=157  Identities=20%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-----------
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-----------   81 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-----------   81 (366)
                      +++|++|+|++|.+.+..|. |..+++|++|+|++|.+.+..|  ++.+++|++|+|++|.+.+ +|..           
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~L~L~~N  109 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANN  109 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEECTTCCEEECCSS
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCCCCCcCEEECcCC
Confidence            44677777777776555543 7777777777777775544333  6666666666666665322 2110           


Q ss_pred             ------cCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecC-CCcCCccccCccccc
Q 017788           82 ------LCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVR-RCTSLEALSSFSFLF  154 (366)
Q Consensus        82 ------i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~-~~~~L~~L~l~~n~l  154 (366)
                            ...+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|.        .+. .+++|+.|+++.|.+
T Consensus       110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA--------ELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG--------GGGGGTTTCCEEECTTSCC
T ss_pred             cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH--------HHhhhCCcccEEecCCCcc
Confidence                  12467888889988888877787888888999999998877665554        222 345555555555555


Q ss_pred             ccCCCCCCceEEeCCcccCChhhhhcchH
Q 017788          155 SAMSPHNDQYFNLSDCLKLDQNELKGIAE  183 (366)
Q Consensus       155 ~~~~~~~~~~l~~l~~l~L~~n~l~~~~~  183 (366)
                      ++. +. ...+..|..|+|++|.++++.+
T Consensus       182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          182 YDV-KG-QVVFAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             CEE-EC-CCCCTTCCEEECCSSCCCEECG
T ss_pred             ccc-cc-cccCCCCCEEECCCCCCCCCCH
Confidence            542 21 1134455555555555554433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.1e-15  Score=125.84  Aligned_cols=137  Identities=23%  Similarity=0.216  Sum_probs=101.8

Q ss_pred             CCCCCCCEEeccCCCCC-CCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           12 KNLVNLKEIDLSYSRQL-KKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~-~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ...++|++|++++|.+. +.+|. +..+++|++|++++|.+.. + ..++.+++|++|+|++|.+.+.+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34578889999988886 56776 6888889999998886544 3 6788888899999988887666777777788888


Q ss_pred             EEEeeCCCCCCcch--HHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           90 RLYLSGCSNLRRIP--ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp--~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      +|++++|.+.+ +|  ..+..+++|+.|++++|.+.+ +|...    .-.+..+++|+.|+++.|.+..
T Consensus        99 ~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~----~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           99 HLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN-LNDYR----ESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT-STTHH----HHHHTTCSSCCEETTEETTSCB
T ss_pred             EEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc-hHHHH----HHHHHhCccCcEecCCCCChhh
Confidence            99998886654 43  678888888888888886543 33200    0035677888888888877665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=8.5e-15  Score=146.47  Aligned_cols=161  Identities=19%  Similarity=0.170  Sum_probs=113.7

Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788           15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS   94 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls   94 (366)
                      ++|++|+|++|.+. .+|  ..+++|++|+|++|.+.+ +|. +..  +|++|+|++|.+.+ +|.   .+++|+.|+|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  148 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD  148 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred             CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence            45777777777764 566  456777777777775544 665 544  77777777777433 665   56777777777


Q ss_pred             CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCc---------CC-------ccccCcccccccCC
Q 017788           95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCT---------SL-------EALSSFSFLFSAMS  158 (366)
Q Consensus        95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~---------~L-------~~L~l~~n~l~~~~  158 (366)
                      +|.+.+ +|.   .+++|+.|++++|.+ +.+|.+..+|+.|+++++.         +|       +.|+++.|.++. +
T Consensus       149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L-~~lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~-l  222 (571)
T 3cvr_A          149 NNQLTM-LPE---LPTSLEVLSVRNNQL-TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH-I  222 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC-C
T ss_pred             CCccCc-CCC---cCCCcCEEECCCCCC-CCcchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee-c
Confidence            776554 555   566777777777754 3466655667777665531         45       888999999987 7


Q ss_pred             CCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788          159 PHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       159 ~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      |..+..+..+..++|++|++++.+|..+.++...
T Consensus       223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~  256 (571)
T 3cvr_A          223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ  256 (571)
T ss_dssp             CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHS
T ss_pred             CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcC
Confidence            7777778999999999999999989888776653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=2e-15  Score=136.76  Aligned_cols=151  Identities=20%  Similarity=0.206  Sum_probs=125.8

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +.++++|++|++++|.+ ..+|.+..+++|++|++++|.+. .++. +..+++|++|+|++|+ +..+|... . ++|++
T Consensus        37 ~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-~-~~L~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNR-LKNLNGIP-S-ACLSR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSC-CSCCTTCC-C-SSCCE
T ss_pred             hhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCc-cCCcCccc-c-CcccE
Confidence            56789999999999987 56778999999999999999654 4555 9999999999999998 45566543 3 99999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+.+ ++ .+..+++|+.|++++|++ +.+|         .+..+++|+.|+++.|.+++.  ..+..+..++.
T Consensus       111 L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i-~~~~---------~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~  176 (263)
T 1xeu_A          111 LFLDNNELRD-TD-SLIHLKNLEILSIRNNKL-KSIV---------MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW  176 (263)
T ss_dssp             EECCSSCCSB-SG-GGTTCTTCCEEECTTSCC-CBCG---------GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred             EEccCCccCC-Ch-hhcCcccccEEECCCCcC-CCCh---------HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence            9999997664 44 589999999999999964 4444         467889999999999999884  67788999999


Q ss_pred             ccCChhhhhcc
Q 017788          171 LKLDQNELKGI  181 (366)
Q Consensus       171 l~L~~n~l~~~  181 (366)
                      +++++|.+.+.
T Consensus       177 L~l~~N~~~~~  187 (263)
T 1xeu_A          177 IDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEECC
T ss_pred             EeCCCCcccCC
Confidence            99999988753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.8e-15  Score=123.57  Aligned_cols=132  Identities=23%  Similarity=0.192  Sum_probs=99.5

Q ss_pred             CCCCCCCEEeccCCCCC-CCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           12 KNLVNLKEIDLSYSRQL-KKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~-~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ...++|++|++++|.+. +.+|. +..+++|++|++++|.+...  ..++.+++|++|++++|.+.+.+|..+..+++|+
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            34578999999999886 57776 78899999999999865544  6788899999999999987766888887799999


Q ss_pred             EEEeeCCCCCCc-chHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCc
Q 017788           90 RLYLSGCSNLRR-IPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSF  150 (366)
Q Consensus        90 ~L~Ls~n~~~~~-lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~  150 (366)
                      +|++++|.+.+. .|..+..+++|++|++++|.+. .+|....    -.+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~----~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRE----NVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHH----HHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHH----HHHHHCCCcccccCC
Confidence            999999876652 3477888999999999998654 3332000    034556677776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=3.9e-16  Score=145.84  Aligned_cols=109  Identities=25%  Similarity=0.308  Sum_probs=72.5

Q ss_pred             CCCCCCEEeccCCCCCCC-CCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC--ccchhcCCCCCC
Q 017788           13 NLVNLKEIDLSYSRQLKK-LPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN--RLPSSLCELISL   88 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~-~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~--~lp~~i~~l~~L   88 (366)
                      ++++|++|+|++|.+... +|. +..+++|++|++++|......+..++.+++|++|+|++|..++  .+|..+..+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            457777777777766443 454 6677777777777776655666667777777777777773233  356666677777


Q ss_pred             cEEEeeCC-CCCCc-chHHHhccC-CCcEEcccccc
Q 017788           89 QRLYLSGC-SNLRR-IPESIINLS-KLELLHLKNCS  121 (366)
Q Consensus        89 ~~L~Ls~n-~~~~~-lp~~i~~L~-~L~~L~L~~n~  121 (366)
                      ++|++++| .+... ++..+..++ +|++|++++|.
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            77777777 44432 566667777 77777777763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.58  E-value=3.8e-15  Score=150.34  Aligned_cols=162  Identities=23%  Similarity=0.166  Sum_probs=137.2

Q ss_pred             cCCCCCCCEEeccCCCCCCCCC--CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC-ccchhcCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN-RLPSSLCELIS   87 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~-~lp~~i~~l~~   87 (366)
                      +..+++|+.++++.+......+  .+..+++++.++++.|......+..+..+++|+.|++++|.... ..|..+..+++
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~  495 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  495 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence            3467788888888777655554  27889999999999998877778888999999999999997554 46778899999


Q ss_pred             CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceE-E
Q 017788           88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF-N  166 (366)
Q Consensus        88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l-~  166 (366)
                      |++|+|++|.+.+..|..|.++++|+.|+|++|++.+..|.        .+.++++|+.|+++.|++++..|..+..+ .
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  567 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  567 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG--------GGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred             cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh--------HHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence            99999999998888889999999999999999966544444        57889999999999999999888888887 6


Q ss_pred             eCCcccCChhhhhc
Q 017788          167 LSDCLKLDQNELKG  180 (366)
Q Consensus       167 ~l~~l~L~~n~l~~  180 (366)
                      .++.++|++|++..
T Consensus       568 ~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          568 SLAFLNLTQNDFAC  581 (635)
T ss_dssp             TCCEEECTTCCBCC
T ss_pred             cCCEEEeeCCCCcc
Confidence            89999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.57  E-value=4.3e-15  Score=139.48  Aligned_cols=164  Identities=17%  Similarity=0.179  Sum_probs=128.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +..+++|++|++++|.+. .++.+..+++|+.|++++|..... +. +..+++|++|++++|.+. .+|. +..+++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~  247 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTW  247 (347)
T ss_dssp             GGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCE
T ss_pred             hccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCE
Confidence            456889999999999884 455588899999999999865543 33 888999999999999854 4554 789999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+.. + +.+..+++|+.|++++|.+ ..+|         .+..+++|+.|+++.|.+.+..+..++.+..++.
T Consensus       248 L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l-~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          248 LEIGTNQISD-I-NAVKDLTKLKMLNVGSNQI-SDIS---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             EECCSSCCCC-C-GGGTTCTTCCEEECCSSCC-CCCG---------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             EECCCCccCC-C-hhHhcCCCcCEEEccCCcc-CCCh---------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            9999997664 4 4688899999999999854 4443         4667788888888888887766666777888888


Q ss_pred             ccCChhhhhcchHHHHHHHHhhh
Q 017788          171 LKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       171 l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +++++|++++..|  +..++.|+
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCS
T ss_pred             EEccCCccccccC--hhhhhccc
Confidence            8888888887766  44445443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.57  E-value=4.7e-15  Score=144.94  Aligned_cols=159  Identities=16%  Similarity=0.086  Sum_probs=78.1

Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-------------
Q 017788           13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-------------   79 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-------------   79 (366)
                      .+++|++|+|++|.+.+ +| ++.+++|++|++++|.+.+ ++  ++.+++|++|++++|.+.+ +|             
T Consensus        62 ~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~  135 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCA  135 (457)
T ss_dssp             GCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CCCTTCTTCCEEECT
T ss_pred             ccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ecCCCCCcCCEEECC
Confidence            44455555555555433 22 4445555555555543322 22  4444455555555444222 22             


Q ss_pred             ------hhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccC-CCCCCccEEe----------cCCCc
Q 017788           80 ------SSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP-ELPCNLFSVG----------VRRCT  142 (366)
Q Consensus        80 ------~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp-~l~~~L~~L~----------l~~~~  142 (366)
                            -.++.+++|++|++++|...+.+  .++.+++|+.|++++|.+. .+| ...++|+.|+          +..++
T Consensus       136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~l~~l~~L~~L~l~~N~l~~~~l~~l~  212 (457)
T 3bz5_A          136 RNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELDVSQNKLLNRLNCDTNNITKLDLNQNI  212 (457)
T ss_dssp             TSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCCCTTCTTCCEEECCSSCCSCCCCTTCT
T ss_pred             CCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eeccccCCCCCEEECcCCcCCeeccccCC
Confidence                  01334444444444444333333  2445555555555555332 233 1113344443          33456


Q ss_pred             CCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchH
Q 017788          143 SLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE  183 (366)
Q Consensus       143 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~  183 (366)
                      +|+.|+++.|.+++ +|  ++.+..++.+++++|.++++.+
T Consensus       213 ~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          213 QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            67777777777766 44  5566667777777777766543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=4.7e-15  Score=149.64  Aligned_cols=151  Identities=23%  Similarity=0.216  Sum_probs=85.6

Q ss_pred             CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      ..+++|+.|++++|.+ ..+|.+..+++|+.|+|++|.+.+ +++ +..+++|+.|+|++|.+ ..+| .+..+++|+.|
T Consensus        40 ~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           40 NELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEE
T ss_pred             hcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEE
Confidence            3456666666666665 344556666666666666664433 332 66666666666666653 3333 45566666666


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcc
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCL  171 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l  171 (366)
                      +|++|.+.. + +.+..+++|+.|+|++|.+. .++         .+..+++|+.|+++.|.+.+..|  +..+..|+.|
T Consensus       115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l~---------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DIT---------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  180 (605)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CCG---------GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             EecCCCCCC-C-ccccCCCccCEEECCCCccC-Cch---------hhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence            666665443 3 34666666666666666432 222         34455556666666665555333  5555555556


Q ss_pred             cCChhhhhcc
Q 017788          172 KLDQNELKGI  181 (366)
Q Consensus       172 ~L~~n~l~~~  181 (366)
                      +|++|.++++
T Consensus       181 ~Ls~N~i~~l  190 (605)
T 1m9s_A          181 YLSKNHISDL  190 (605)
T ss_dssp             ECCSSCCCBC
T ss_pred             ECcCCCCCCC
Confidence            6666555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=1.7e-15  Score=152.91  Aligned_cols=152  Identities=21%  Similarity=0.161  Sum_probs=127.3

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|.+. .+| .+..+++|+.
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~  135 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLES  135 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCC-CCG-GGGGCTTCSE
T ss_pred             HccCCCCCEEEeeCCCCCCC-hhhccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCC-CCc-cccCCCccCE
Confidence            56789999999999998654 44999999999999999654 444 7999999999999999954 444 5889999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |+|++|.+.+.  ..+..+++|+.|+|++|.+.. ++         .+..+++|+.|+++.|.+.+ ++ .+..+..|+.
T Consensus       136 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~---------~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~  201 (605)
T 1m9s_A          136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV---------PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV  201 (605)
T ss_dssp             EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CG---------GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred             EECCCCccCCc--hhhcccCCCCEEECcCCcCCC-ch---------hhccCCCCCEEECcCCCCCC-Ch-HHccCCCCCE
Confidence            99999987654  678999999999999996543 33         25678999999999999988 43 5788899999


Q ss_pred             ccCChhhhhcc
Q 017788          171 LKLDQNELKGI  181 (366)
Q Consensus       171 l~L~~n~l~~~  181 (366)
                      |+|++|++.+.
T Consensus       202 L~L~~N~l~~~  212 (605)
T 1m9s_A          202 LELFSQECLNK  212 (605)
T ss_dssp             EECCSEEEECC
T ss_pred             EEccCCcCcCC
Confidence            99999998764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.55  E-value=6.2e-15  Score=144.32  Aligned_cols=163  Identities=20%  Similarity=0.204  Sum_probs=102.3

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +.++++|++|++++|.+.+..| ++.+++|+.|++++|... .+ +.+..+++|+.|++++|.+.+..|  +..+++|+.
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  269 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE  269 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence            3456788888888887754433 677788888888887543 33 356777788888888777544333  667777888


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCC--CCCccEEecC-----------CCcCCccccCcccccccC
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL--PCNLFSVGVR-----------RCTSLEALSSFSFLFSAM  157 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l--~~~L~~L~l~-----------~~~~L~~L~l~~n~l~~~  157 (366)
                      |++++|.+.+. |. +..+++|+.|++++|++.+ ++.+  .++|+.|+++           .+++|+.|+++.|.+++.
T Consensus       270 L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          270 LKLGANQISNI-SP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             EECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             EECCCCccCcc-cc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence            88877765543 33 6777777777777775433 3321  1233333332           345566666666666552


Q ss_pred             CCCCCceEEeCCcccCChhhhhcchH
Q 017788          158 SPHNDQYFNLSDCLKLDQNELKGIAE  183 (366)
Q Consensus       158 ~~~~~~~l~~l~~l~L~~n~l~~~~~  183 (366)
                        ..+..+..++.+++++|.+++..|
T Consensus       347 --~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          347 --SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             --hhhccCCCCCEEeCCCCccCccch
Confidence              245556666666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=1.7e-14  Score=124.26  Aligned_cols=128  Identities=19%  Similarity=0.186  Sum_probs=95.8

Q ss_pred             CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCc-cccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788           18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS-SIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG   95 (366)
Q Consensus        18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~-~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~   95 (366)
                      +++++++|.+ +.+|. +..  +|++|++++|.+.+..+. .++.+++|++|+|++|.+.+..|..+..+++|++|+|++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            6788888887 56664 433  788888888865444333 378888888888888887777778888888888888888


Q ss_pred             CCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           96 CSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        96 n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      |.+.+..|..+.++++|++|++++|++.+..|.        .+..+++|+.|+++.|.+.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG--------SFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT--------SSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH--------HhhcCCCCCEEEeCCCCccC
Confidence            887766666788888888888888876666665        56666777777777776554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.55  E-value=1.4e-14  Score=141.78  Aligned_cols=161  Identities=22%  Similarity=0.157  Sum_probs=108.6

Q ss_pred             CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      +.+++|++|++++|.+. .++.+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+ +|. +..+++|+.|
T Consensus       218 ~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L  292 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNL  292 (466)
T ss_dssp             GGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEE
T ss_pred             cccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeE
Confidence            34667777777777763 34556777777777777775543322  6677777777777776443 333 5667777777


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccC-CCCCCccEEec-----------CCCcCCccccCcccccccCCC
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP-ELPCNLFSVGV-----------RRCTSLEALSSFSFLFSAMSP  159 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp-~l~~~L~~L~l-----------~~~~~L~~L~l~~n~l~~~~~  159 (366)
                      ++++|.+.+..|  +..+++|+.|++++|++.+..| ...++|+.|++           .++++|+.|+++.|.+++..|
T Consensus       293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence            777776554332  6667777777777765444332 11245555554           457899999999999998665


Q ss_pred             CCCceEEeCCcccCChhhhhcc
Q 017788          160 HNDQYFNLSDCLKLDQNELKGI  181 (366)
Q Consensus       160 ~~~~~l~~l~~l~L~~n~l~~~  181 (366)
                        +..+..++.+++++|.+++.
T Consensus       371 --~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          371 --LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             --GTTCTTCCEEECCCEEEECC
T ss_pred             --hhcCCCCCEEeccCCcccCC
Confidence              78889999999999988763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=5e-14  Score=137.52  Aligned_cols=78  Identities=28%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++++++|++|++++|.+.+ +|.+.  ++|++|++++|.+. .+| .++.+++|++|++++|++. .+|..   +++|++
T Consensus       191 ~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~  261 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEA  261 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCE
T ss_pred             ccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCE
Confidence            4456666666666666533 34321  35666666665333 444 3555666666666655532 23331   234444


Q ss_pred             EEeeCCC
Q 017788           91 LYLSGCS   97 (366)
Q Consensus        91 L~Ls~n~   97 (366)
                      |++++|.
T Consensus       262 L~l~~N~  268 (454)
T 1jl5_A          262 LNVRDNY  268 (454)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            4444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.54  E-value=3.2e-16  Score=146.47  Aligned_cols=162  Identities=17%  Similarity=0.139  Sum_probs=119.8

Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccc-cCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVE-THSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~-~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      ++++.|++++|.+.+..+.+..+++|++|++++|.+... ++..+..+++|++|+|++|.+....|..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            789999999999987777788899999999999976555 7888999999999999999977788899999999999999


Q ss_pred             eCCC-CCC-cchHHHhccCCCcEEccccc-ccccc-cCCC---CC-CccEEecCCC----------------cCCccccC
Q 017788           94 SGCS-NLR-RIPESIINLSKLELLHLKNC-SKLLS-LPEL---PC-NLFSVGVRRC----------------TSLEALSS  149 (366)
Q Consensus        94 s~n~-~~~-~lp~~i~~L~~L~~L~L~~n-~~l~~-lp~l---~~-~L~~L~l~~~----------------~~L~~L~l  149 (366)
                      ++|. +.. .+|..+.++++|++|++++| .+... ++..   .+ +|++|+++++                ++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            9994 443 37888999999999999999 54432 3331   12 5555555443                24555555


Q ss_pred             cccc-cccCCCCCCceEEeCCcccCChh
Q 017788          150 FSFL-FSAMSPHNDQYFNLSDCLKLDQN  176 (366)
Q Consensus       150 ~~n~-l~~~~~~~~~~l~~l~~l~L~~n  176 (366)
                      +.|. ++...+..+..+..|+.|++++|
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            5554 33333334445555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=5.6e-14  Score=142.08  Aligned_cols=81  Identities=26%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             CCCcEEcccccccccccCCCCCCccEEecCC---------CcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788          110 SKLELLHLKNCSKLLSLPELPCNLFSVGVRR---------CTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       110 ~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~---------~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      ++|+.|++++|. ++.+|..+++|+.|++++         +++|+.|+++.|.++. +|..+..+..+..++|++|++++
T Consensus       221 ~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          221 SGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCH
T ss_pred             CCCCEEEccCCc-cCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCC
Confidence            567777777764 345666667777777665         3568888888888885 67788888899999999999998


Q ss_pred             chHHHHHHHHhh
Q 017788          181 IAEDALQKIQQK  192 (366)
Q Consensus       181 ~~~~~~~~l~~L  192 (366)
                      ..+..+.+++..
T Consensus       299 ~~~~~l~~L~~~  310 (622)
T 3g06_A          299 RTLQALREITSA  310 (622)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             cCHHHHHhcccc
Confidence            888888776644

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=1.3e-14  Score=122.02  Aligned_cols=136  Identities=17%  Similarity=0.156  Sum_probs=114.4

Q ss_pred             CCCCCcEEecccCCCc-cccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcE
Q 017788           36 QARNLENLLLKACSSL-VETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL  114 (366)
Q Consensus        36 ~l~~L~~L~L~~n~~~-~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~  114 (366)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4578999999999765 5888889999999999999999544 4 77889999999999999988779999999999999


Q ss_pred             EcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCC---CCCceEEeCCcccCChhhhhc
Q 017788          115 LHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP---HNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       115 L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      |++++|.+ +.+|...      .+.++++|+.|+++.|.+++..+   ..+..+..++.++++.|.+..
T Consensus       100 L~Ls~N~l-~~~~~~~------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          100 LNLSGNKL-KDISTLE------PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EECBSSSC-CSSGGGG------GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeccCCcc-CcchhHH------HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999955 5544110      67789999999999999998443   377888999999999887754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.5e-14  Score=119.06  Aligned_cols=128  Identities=16%  Similarity=0.101  Sum_probs=105.1

Q ss_pred             CCCCCcEEecccCCCc-cccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcE
Q 017788           36 QARNLENLLLKACSSL-VETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL  114 (366)
Q Consensus        36 ~l~~L~~L~L~~n~~~-~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~  114 (366)
                      ..++|+.|++++|.+. +.+|..++.+++|++|++++|.+.+.  ..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999999776 58898899999999999999985544  77889999999999999988779999999999999


Q ss_pred             EcccccccccccC--CCCCCccEEecCCCcCCccccCcccccccCCC---CCCceEEeCCcccCC
Q 017788          115 LHLKNCSKLLSLP--ELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP---HNDQYFNLSDCLKLD  174 (366)
Q Consensus       115 L~L~~n~~l~~lp--~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~L~  174 (366)
                      |++++|.+. .+|  .        .+.++++|+.|+++.|.+++..+   ..+..+..++.++++
T Consensus        93 L~ls~N~i~-~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIK-DLSTIE--------PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCC-SHHHHG--------GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCC-ChHHHH--------HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999654 332  4        57788899999999998887433   356666667666664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.51  E-value=3.4e-16  Score=149.46  Aligned_cols=162  Identities=14%  Similarity=0.081  Sum_probs=100.0

Q ss_pred             cCCCCCCCEEeccCCCC---CCCCCC-C-------CCCCCCcEEecccCCCcc----ccCccccCCcCCcEEeccccccc
Q 017788           11 LKNLVNLKEIDLSYSRQ---LKKLPD-L-------SQARNLENLLLKACSSLV----ETHSSIQYLSKLVTLDMRLCKNL   75 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~---~~~~p~-l-------~~l~~L~~L~L~~n~~~~----~~p~~i~~L~~L~~L~L~~n~~~   75 (366)
                      +.++++|++|+|++|.+   .+.+|. +       ..+++|++|+|++|.+..    .+|..+..+++|++|+|++|.+.
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            34688888888888643   233442 3       678888888888887655    36777888888888888888864


Q ss_pred             Cc----cchhcCCC---------CCCcEEEeeCCCCC-Ccch---HHHhccCCCcEEccccccccc-----ccCCCCCCc
Q 017788           76 NR----LPSSLCEL---------ISLQRLYLSGCSNL-RRIP---ESIINLSKLELLHLKNCSKLL-----SLPELPCNL  133 (366)
Q Consensus        76 ~~----lp~~i~~l---------~~L~~L~Ls~n~~~-~~lp---~~i~~L~~L~~L~L~~n~~l~-----~lp~l~~~L  133 (366)
                      ..    ++..+..+         ++|++|++++|.+. ..+|   ..+..+++|++|++++|.+..     .+|.     
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-----  210 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE-----  210 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH-----
Confidence            33    33333334         78888888888765 3455   467778888888888885541     2231     


Q ss_pred             cEEecCCCcCCccccCcccccc----cCCCCCCceEEeCCcccCChhhhhc
Q 017788          134 FSVGVRRCTSLEALSSFSFLFS----AMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       134 ~~L~l~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                         .+.++++|+.|+++.|.++    ..+|..+..++.|+.|+|++|.+.+
T Consensus       211 ---~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          211 ---GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             ---TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ---HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence               2334444555555555442    2233333444444455555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.51  E-value=5.8e-14  Score=120.96  Aligned_cols=112  Identities=18%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             CCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      ..+|++|+|++|++.+..+.  +..+++|++|+|++|.+.+..|..++.+++|++|+|++|.+.+..|..+..+++|++|
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            34899999999999766664  8999999999999998888778999999999999999999777777778999999999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccc
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS  125 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~  125 (366)
                      +|++|.+.+..|..+..+++|++|++++|.+...
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9999999888899999999999999999976543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=2.6e-15  Score=154.78  Aligned_cols=114  Identities=21%  Similarity=0.221  Sum_probs=70.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCC-CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLP-DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      +..++.|++|+|++|.+. .+| .+.++++|++|+|++|.+. .+|..++.|++|++|+|++|.+. .+|..++.+++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence            345566666666666664 444 3556666666666666443 66666666666666666666633 5666666666666


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCC
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPE  128 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~  128 (366)
                      +|+|++|.+ +.+|..|++|++|+.|+|++|.+.+.+|.
T Consensus       297 ~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             EEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             EEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChH
Confidence            666666644 35666666666666666666665555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.50  E-value=1.7e-13  Score=133.87  Aligned_cols=132  Identities=24%  Similarity=0.221  Sum_probs=75.4

Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCC--------
Q 017788           15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELI--------   86 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~--------   86 (366)
                      ++|++|++++|.+.+ +|+++++++|++|++++|.+. .+|..+   .+|++|++++|.+. .+| .++.++        
T Consensus       131 ~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECC
Confidence            466666666666643 556666666666666666433 233321   24444444444422 233 233344        


Q ss_pred             ------------CCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCC---------cCCc
Q 017788           87 ------------SLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLE  145 (366)
Q Consensus        87 ------------~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~---------~~L~  145 (366)
                                  +|++|++++|.+. .+| .++.+++|++|++++|++ ..+|..+.+|+.|+++++         ++|+
T Consensus       204 ~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~  280 (454)
T 1jl5_A          204 NNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLT  280 (454)
T ss_dssp             SSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred             CCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcC-CcccccccccCEEECCCCcccccCcccCcCC
Confidence                        4445555554333 455 367777788888877744 456666677777776543         4567


Q ss_pred             cccCccccccc
Q 017788          146 ALSSFSFLFSA  156 (366)
Q Consensus       146 ~L~l~~n~l~~  156 (366)
                      .|+++.|.+++
T Consensus       281 ~L~ls~N~l~~  291 (454)
T 1jl5_A          281 FLDVSENIFSG  291 (454)
T ss_dssp             EEECCSSCCSE
T ss_pred             EEECcCCccCc
Confidence            77777777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.50  E-value=5.4e-15  Score=137.48  Aligned_cols=151  Identities=12%  Similarity=0.015  Sum_probs=118.9

Q ss_pred             CCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccc-cCCcCCcEEecccccccCccchhcCCCCCCc
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSI-QYLSKLVTLDMRLCKNLNRLPSSLCELISLQ   89 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i-~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~   89 (366)
                      ..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..+..+ ..+++|++|+|++|. +..+|... .+++|+
T Consensus       117 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~l~~L~  194 (317)
T 3o53_A          117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLK  194 (317)
T ss_dssp             CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-CCTTCC
T ss_pred             cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccc-ccccCC
Confidence            4567899999999998766664 8899999999999998777666666 479999999999999 45555443 699999


Q ss_pred             EEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccc-cCCCCCCceEEeC
Q 017788           90 RLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS-AMSPHNDQYFNLS  168 (366)
Q Consensus        90 ~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~l  168 (366)
                      +|++++|.+. .+|..+..+++|+.|++++|.+ +.+|.        .+..+++|+.|+++.|.+. +.++..+..+..+
T Consensus       195 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l-~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             EEECCSSCCC-EECGGGGGGTTCSEEECTTSCC-CEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             EEECCCCcCC-cchhhhcccCcccEEECcCCcc-cchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence            9999999766 5667799999999999999955 56777        6778899999999999887 3344444444444


Q ss_pred             CcccCC
Q 017788          169 DCLKLD  174 (366)
Q Consensus       169 ~~l~L~  174 (366)
                      +.+++.
T Consensus       265 ~~l~l~  270 (317)
T 3o53_A          265 QTVAKQ  270 (317)
T ss_dssp             HHHHHH
T ss_pred             eEEECC
Confidence            444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=2e-14  Score=148.20  Aligned_cols=125  Identities=23%  Similarity=0.256  Sum_probs=76.3

Q ss_pred             ccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCC
Q 017788           53 ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCN  132 (366)
Q Consensus        53 ~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~  132 (366)
                      ..+..+..+++|+.|+|++|. +..+|..++.+++|++|+|++|.+. .+|..|++|++|+.|+|++|.+. .+|.    
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~----  287 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA----  287 (727)
T ss_dssp             -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS----
T ss_pred             cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh----
Confidence            345556666666667776666 3356666666666677777666554 66666666666777777666443 5555    


Q ss_pred             ccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHH
Q 017788          133 LFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKI  189 (366)
Q Consensus       133 L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l  189 (366)
                          .+.++++|+.|+++.|.++. +|..++.+..|+.|+|++|.+++.+|..+..+
T Consensus       288 ----~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          288 ----ELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             ----SGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             ----hhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence                55666666666666666654 55556666666777777777766666666544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.50  E-value=1.3e-14  Score=136.72  Aligned_cols=179  Identities=13%  Similarity=0.079  Sum_probs=122.5

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCc-cccCCcCCcE-EecccccccCccchhcCCCCCCcEE
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHS-SIQYLSKLVT-LDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~-~i~~L~~L~~-L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      +++++|+|++|++....++ |.++++|++|+|++|.+.+.+|. ++.++++|+. +.++.|++....|..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            5788999999888543334 88899999999998877676654 5678888765 4455566444446677888889999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCC-----CCCccEEecC------------CCcCCccccCcc-cc
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL-----PCNLFSVGVR------------RCTSLEALSSFS-FL  153 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l-----~~~L~~L~l~------------~~~~L~~L~l~~-n~  153 (366)
                      ++++|.+....+..+....++..|++.++..+..+|..     ...++.|+++            ...+|+.+.+.. |.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            88888766554445555666777777665555555531     2334444443            234677777764 66


Q ss_pred             cccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          154 FSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       154 l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      ++.+.+..++.+..|+.+++++|+++.+.+..+.+++.|.
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence            7765556788899999999999998877666665555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=4.1e-14  Score=120.03  Aligned_cols=133  Identities=15%  Similarity=0.108  Sum_probs=93.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCC-CCcEEecccCCCccccCccccCCcCCcEEecccccccCccchh-cCCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQAR-NLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSS-LCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~-~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~-i~~l~~L   88 (366)
                      +.++.+|++|++++|.+. .+|.+..+. +|++|++++|.+.+ + +.++.+++|++|+|++|.+. .+|.. +..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            456788889999988875 557765555 88999998886554 4 57888888888888888844 45544 4788888


Q ss_pred             cEEEeeCCCCCCcchH--HHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccc
Q 017788           89 QRLYLSGCSNLRRIPE--SIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFL  153 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~  153 (366)
                      ++|++++|.+ +.+|.  .+..+++|+.|++++|.+ ..+|..    +...+..+++|+.|+++.|.
T Consensus        91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~----~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPV-TNKKHY----RLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGG-GGSTTH----HHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCC-CCcHhH----HHHHHHHCCccceeCCCcCC
Confidence            8888888865 45666  778888888888888854 345540    00014556666666665554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.49  E-value=4.6e-14  Score=142.72  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788           15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS   94 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls   94 (366)
                      ++|++|+|++|.+. .+|.  .+++|++|+|++|.+ +.+|.   .+++|++|+|++|. +..+|.   .+++|+.|+++
T Consensus        61 ~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~  129 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIF  129 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECC
T ss_pred             CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECC
Confidence            45666666666553 3444  355666666666543 34443   45555555555555 233333   33444555554


Q ss_pred             CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEe
Q 017788           95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVG  137 (366)
Q Consensus        95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~  137 (366)
                      +|.+. .+|..   +++|++|++++|. +..+|..+.+|+.|.
T Consensus       130 ~N~l~-~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~  167 (622)
T 3g06_A          130 GNQLT-SLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLW  167 (622)
T ss_dssp             SSCCS-CCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEE
T ss_pred             CCCCC-cCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEE
Confidence            44332 23321   2444444444442 233343344444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.49  E-value=1.7e-13  Score=124.07  Aligned_cols=129  Identities=22%  Similarity=0.136  Sum_probs=106.4

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|++|+|++|.+.+..+ +.++++|++|++++|.+. .+|... . ++|++|+|++|.+. .+| .+..+++|+.
T Consensus        59 l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~  132 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELR-DTD-SLIHLKNLEI  132 (263)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEECCSSCCS-BSG-GGTTCTTCCE
T ss_pred             HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEccCCccC-CCh-hhcCcccccE
Confidence            5678899999999999865444 999999999999999654 455433 3 99999999999854 455 5889999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccC
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAM  157 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~  157 (366)
                      |++++|.+.+ +| .+..+++|+.|++++|.+... +         .+..+++|+.|+++.|.+...
T Consensus       133 L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~---------~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          133 LSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-G---------GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             EECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-T---------TSTTCCCCCEEEEEEEEEECC
T ss_pred             EECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-H---------HhccCCCCCEEeCCCCcccCC
Confidence            9999997654 55 689999999999999965443 3         577889999999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=2e-13  Score=117.79  Aligned_cols=126  Identities=19%  Similarity=0.159  Sum_probs=94.7

Q ss_pred             CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788           18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC   96 (366)
Q Consensus        18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n   96 (366)
                      ++++++++.+ ..+|. +.  ++|++|++++|.+ ..+|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGL-KVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCC-SSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCC-CcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            5788888877 45664 43  5788999998854 577788888899999999988866666667888889999999988


Q ss_pred             CCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccc
Q 017788           97 SNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS  155 (366)
Q Consensus        97 ~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~  155 (366)
                      .+....|..|..+++|+.|+|++|.+. .+|..       .+.++++|+.|+++.|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~-------~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEG-------AFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTT-------TTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChh-------hhhcCccccEEEeCCCCee
Confidence            877766777888888888888888543 44431       3556677777777766554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.46  E-value=2.7e-15  Score=143.22  Aligned_cols=178  Identities=17%  Similarity=0.066  Sum_probs=132.0

Q ss_pred             cCCCCCCCEEeccCCCCCCC----CC-CCCCCCCCcEEecccCC---CccccCccc-------cCCcCCcEEeccccccc
Q 017788           11 LKNLVNLKEIDLSYSRQLKK----LP-DLSQARNLENLLLKACS---SLVETHSSI-------QYLSKLVTLDMRLCKNL   75 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~----~p-~l~~l~~L~~L~L~~n~---~~~~~p~~i-------~~L~~L~~L~L~~n~~~   75 (366)
                      +..+++|++|+|++|.+...    ++ .+..+++|++|+|++|.   +.+.+|..+       ..+++|++|+|++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            45788999999999988654    22 37789999999999873   233445444       78899999999999976


Q ss_pred             C----ccchhcCCCCCCcEEEeeCCCCCCcch----HHHhcc---------CCCcEEcccccccc-cccCCCCCCccEEe
Q 017788           76 N----RLPSSLCELISLQRLYLSGCSNLRRIP----ESIINL---------SKLELLHLKNCSKL-LSLPELPCNLFSVG  137 (366)
Q Consensus        76 ~----~lp~~i~~l~~L~~L~Ls~n~~~~~lp----~~i~~L---------~~L~~L~L~~n~~l-~~lp~l~~~L~~L~  137 (366)
                      .    .+|..+..+++|++|+|++|.+....+    ..+..+         ++|++|++++|.+. ..+|.+..     .
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~  182 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-----T  182 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-----H
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH-----H
Confidence            6    488888899999999999998754333    344445         89999999999765 34442110     3


Q ss_pred             cCCCcCCccccCccccccc-----CCCCCCceEEeCCcccCChhhhh----cchHHHHHHHHhhh
Q 017788          138 VRRCTSLEALSSFSFLFSA-----MSPHNDQYFNLSDCLKLDQNELK----GIAEDALQKIQQKA  193 (366)
Q Consensus       138 l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~l~~l~L~~n~l~----~~~~~~~~~l~~L~  193 (366)
                      +..+++|+.|+++.|.++.     ..+..+..+..|+.|+|++|.++    ..+|..+..++.|+
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence            4567789999999888762     24446778889999999999986    45566666666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=3.7e-13  Score=114.10  Aligned_cols=130  Identities=18%  Similarity=0.127  Sum_probs=92.8

Q ss_pred             CCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788           17 LKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC   96 (366)
Q Consensus        17 L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n   96 (366)
                      .+.++++++++ ..+|. .-.++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l-~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGL-TSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCC-SSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCC-ccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            46778887776 34553 12367888888888665544455678888888888888755444445678888888888888


Q ss_pred             CCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           97 SNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        97 ~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      .+.+..+..+..+++|+.|++++|.+. .+|..       .+.++++|+.|+++.|.+.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~-------~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDG-------IFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT-------TTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcce-EeCHH-------HhcCCcccCEEEecCCCeec
Confidence            777655566788888888888888554 45541       34667888888888888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=6.5e-13  Score=112.57  Aligned_cols=133  Identities=15%  Similarity=0.023  Sum_probs=89.3

Q ss_pred             CcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788           40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN  119 (366)
Q Consensus        40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~  119 (366)
                      .+.++++++. +..+|..+  .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus         9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4567777663 44555443  36788888887775544444567778888888888776655555567788888888888


Q ss_pred             cccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchH
Q 017788          120 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAE  183 (366)
Q Consensus       120 n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~  183 (366)
                      |.+.+..+.        .+.++++|+.|+++.|.+++..+..+..+..++.+++++|++.+..+
T Consensus        86 N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNG--------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHH--------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            755433332        34667778888888887777555556777777788888887776544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.44  E-value=2.6e-13  Score=135.70  Aligned_cols=156  Identities=24%  Similarity=0.283  Sum_probs=123.2

Q ss_pred             CCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEee
Q 017788           16 NLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLS   94 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls   94 (366)
                      +|+.|+|++|.+.+ +|. +  .++|++|+|++|.+. .+|   ..+++|++|+|++|.+.+ +|. +..  +|++|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            89999999999865 665 6  389999999999654 777   568999999999998554 888 655  99999999


Q ss_pred             CCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCC---------cCCccccCcccccccCCCCCCceE
Q 017788           95 GCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRC---------TSLEALSSFSFLFSAMSPHNDQYF  165 (366)
Q Consensus        95 ~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~---------~~L~~L~l~~n~l~~~~~~~~~~l  165 (366)
                      +|.+.+ +|.   .+++|+.|++++|.+ +.+|..+.+|+.|+++++         ++|+.|+++.|.++. +|. +.. 
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~-lp~-~~~-  200 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQL-TMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLES-LPA-VPV-  200 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC-CC--
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCcc-CcCCCcCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCc-hhh-HHH-
Confidence            998765 777   789999999999965 558887788999988776         378899999999886 665 544 


Q ss_pred             EeC-------CcccCChhhhhcchHHHHHHHHhh
Q 017788          166 NLS-------DCLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       166 ~~l-------~~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                       .+       +.++|++|.++.+ |..+.++++|
T Consensus       201 -~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L  232 (571)
T 3cvr_A          201 -RNHHSEETEIFFRCRENRITHI-PENILSLDPT  232 (571)
T ss_dssp             --------CCEEEECCSSCCCCC-CGGGGGSCTT
T ss_pred             -hhhcccccceEEecCCCcceec-CHHHhcCCCC
Confidence             56       8889999998864 4444334444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.43  E-value=5.9e-13  Score=114.78  Aligned_cols=108  Identities=20%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             CCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .++|++|+|++|.+. .+|. +.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+.+..|..|..+++|++|+
T Consensus        30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            468999999999985 6665 99999999999999988777777899999999999999997777777899999999999


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEccccccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      |++|.+....+..+..+++|+.|++++|+.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            999987755555789999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=1e-12  Score=131.64  Aligned_cols=106  Identities=18%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             CCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788           16 NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG   95 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~   95 (366)
                      .|++|+|++|.+.+ +|.++.+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+| .++.+++|++|+|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCC
Confidence            47778888887743 666777888888888887544 77778888888888888887744 466 677888888888888


Q ss_pred             CCCCCcc-hHHHhccCCCcEEcccccccccc
Q 017788           96 CSNLRRI-PESIINLSKLELLHLKNCSKLLS  125 (366)
Q Consensus        96 n~~~~~l-p~~i~~L~~L~~L~L~~n~~l~~  125 (366)
                      |.+.+.. |..++.+++|+.|+|++|++.+.
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            8766654 77788888888888888755433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.38  E-value=3.8e-13  Score=126.69  Aligned_cols=170  Identities=16%  Similarity=0.140  Sum_probs=120.8

Q ss_pred             CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccccccCccch-hcCCCCCCcE-EEe
Q 017788           18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPS-SLCELISLQR-LYL   93 (366)
Q Consensus        18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~l~~L~~-L~L   93 (366)
                      ++++.+++++ +.+|. +  .+++++|+|++|.+. .+| .+|+++++|++|+|++|++.+.+|. .|.++++|+. +.+
T Consensus        12 ~~v~C~~~~L-t~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTC-CSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCC-CccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            6788888887 46674 6  368999999999655 555 5789999999999999998887875 5678988876 555


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCCCC----CCccEEecCC--------------C-cCCccccCccccc
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP----CNLFSVGVRR--------------C-TSLEALSSFSFLF  154 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~----~~L~~L~l~~--------------~-~~L~~L~l~~n~l  154 (366)
                      ++|.+....|..+..+++|++|++++|++ ..+|...    ..+..+++.+              + ..++.|+++.|.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            66766655677889999999999999965 4444321    1233333321              2 3467788888888


Q ss_pred             ccCCCCCCceEEeCCcccCCh-hhhhcchHHHHHHHHhhh
Q 017788          155 SAMSPHNDQYFNLSDCLKLDQ-NELKGIAEDALQKIQQKA  193 (366)
Q Consensus       155 ~~~~~~~~~~l~~l~~l~L~~-n~l~~~~~~~~~~l~~L~  193 (366)
                      +.+.+..+. ...+..+++.+ |.++.+.+++|..+++|+
T Consensus       167 ~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~  205 (350)
T 4ay9_X          167 QEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPV  205 (350)
T ss_dssp             CEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred             cCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccc
Confidence            874444444 34566677764 667766666776666665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.36  E-value=4.4e-14  Score=133.74  Aligned_cols=112  Identities=11%  Similarity=0.084  Sum_probs=77.3

Q ss_pred             CCCCCCCEEeccCCCCCCCCC----C-CCCCC-CCcEEecccCCCccccCccccCC-----cCCcEEecccccccCccch
Q 017788           12 KNLVNLKEIDLSYSRQLKKLP----D-LSQAR-NLENLLLKACSSLVETHSSIQYL-----SKLVTLDMRLCKNLNRLPS   80 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p----~-l~~l~-~L~~L~L~~n~~~~~~p~~i~~L-----~~L~~L~L~~n~~~~~lp~   80 (366)
                      ...++|++|+|++|.+....+    . +.+++ +|++|+|++|.+....+..+..+     ++|++|+|++|.+....+.
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            345568888888888755443    3 66777 78888888886665555555554     7888888888886555554


Q ss_pred             hc----CCC-CCCcEEEeeCCCCCCcchHHHhc-----cCCCcEEcccccccc
Q 017788           81 SL----CEL-ISLQRLYLSGCSNLRRIPESIIN-----LSKLELLHLKNCSKL  123 (366)
Q Consensus        81 ~i----~~l-~~L~~L~Ls~n~~~~~lp~~i~~-----L~~L~~L~L~~n~~l  123 (366)
                      .+    ..+ ++|++|+|++|.+....+..+..     .++|++|++++|.+.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            33    334 78888888888776655555443     258888888888654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=2.3e-12  Score=109.10  Aligned_cols=104  Identities=21%  Similarity=0.199  Sum_probs=89.3

Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCcc-ccCCcCCcEEecccccccCccch--hcCCCCCCcEE
Q 017788           15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSS-IQYLSKLVTLDMRLCKNLNRLPS--SLCELISLQRL   91 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~-i~~L~~L~~L~L~~n~~~~~lp~--~i~~l~~L~~L   91 (366)
                      ++|++|+|++|.+.+ ++.+..+++|++|++++|.+. .+|+. ++.+++|++|++++|. ++.+|.  .+..+++|++|
T Consensus        42 ~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             TCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCCCCc-ccccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEE
Confidence            399999999999865 477999999999999999665 45544 5899999999999998 477887  78899999999


Q ss_pred             EeeCCCCCCcchHH----HhccCCCcEEccccccc
Q 017788           92 YLSGCSNLRRIPES----IINLSKLELLHLKNCSK  122 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~----i~~L~~L~~L~L~~n~~  122 (366)
                      ++++|.+. .+|..    +..+++|+.|++++|..
T Consensus       119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999765 56664    89999999999999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=6.3e-15  Score=127.56  Aligned_cols=135  Identities=15%  Similarity=0.105  Sum_probs=99.8

Q ss_pred             CCCCCCEEeccCCCCCCCCC-------CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCC
Q 017788           13 NLVNLKEIDLSYSRQLKKLP-------DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL   85 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p-------~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l   85 (366)
                      ....++.++++.+.+.+..|       .+..+++|++|++++|.+. .+| .+..+++|++|++++|. +..+|..+..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNL-IKKIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCC-cccccchhhcC
Confidence            34556666666666655555       3678889999999998554 477 88889999999999988 45788877778


Q ss_pred             CCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCC
Q 017788           86 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSP  159 (366)
Q Consensus        86 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~  159 (366)
                      ++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|...      .+..+++|+.|+++.|.+.+..|
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~------~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEID------KLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHH------HHTTTTTCSEEEECSCHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHH------HHhcCCCCCEEEecCCccccccc
Confidence            899999999987654 66 6888999999999998543 332100      45677888888888888766443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=7.2e-12  Score=105.60  Aligned_cols=103  Identities=17%  Similarity=0.083  Sum_probs=75.5

Q ss_pred             CCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788           17 LKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG   95 (366)
Q Consensus        17 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~   95 (366)
                      .+++++++|.+ ..+|. +  .++|++|+|++|.+.+..|..++.+++|++|+|++|++.+..|..+..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            56788888877 44554 4  37788888888876666677788888888888888875544444567888888888888


Q ss_pred             CCCCCcchHHHhccCCCcEEccccccc
Q 017788           96 CSNLRRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        96 n~~~~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      |.+.+..+..+.++++|+.|+|++|++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            876655555677888888888888754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.30  E-value=4.1e-12  Score=127.29  Aligned_cols=159  Identities=19%  Similarity=0.147  Sum_probs=107.1

Q ss_pred             cCCCCCCCEEeccCCC-------------CCCCCCC-CCCCCCCcEEe-cccCCCccccCc------cccC--CcCCcEE
Q 017788           11 LKNLVNLKEIDLSYSR-------------QLKKLPD-LSQARNLENLL-LKACSSLVETHS------SIQY--LSKLVTL   67 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~-------------~~~~~p~-l~~l~~L~~L~-L~~n~~~~~~p~------~i~~--L~~L~~L   67 (366)
                      ++++++|+.|++++|.             ..+..|. ++.+++|+.|+ ++.|. ...++.      .+..  ...|+.|
T Consensus       368 i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~~l~l~~n~i~~l~~~~L~~L  446 (567)
T 1dce_A          368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLRSKFLLENSVLKMEYADVRVL  446 (567)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhhhhhhhcccccccCccCceEE
Confidence            3456667777775553             3344444 66777777777 44431 111111      1111  1257888


Q ss_pred             ecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccc
Q 017788           68 DMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEAL  147 (366)
Q Consensus        68 ~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L  147 (366)
                      +|++|. +..+|. ++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+. .+|         .+.++++|+.|
T Consensus       447 ~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp---------~l~~l~~L~~L  513 (567)
T 1dce_A          447 HLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD---------GVANLPRLQEL  513 (567)
T ss_dssp             ECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG---------GGTTCSSCCEE
T ss_pred             EecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc---------ccCCCCCCcEE
Confidence            888887 444676 778888888888888665 77888888888888888887543 354         46677888888


Q ss_pred             cCcccccccCC-CCCCceEEeCCcccCChhhhhcchH
Q 017788          148 SSFSFLFSAMS-PHNDQYFNLSDCLKLDQNELKGIAE  183 (366)
Q Consensus       148 ~l~~n~l~~~~-~~~~~~l~~l~~l~L~~n~l~~~~~  183 (366)
                      +++.|.+++.. |..++.+..|+.|+|++|++++.++
T Consensus       514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            88888888755 7778888888888888888877644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.29  E-value=5.5e-14  Score=136.85  Aligned_cols=181  Identities=18%  Similarity=0.130  Sum_probs=120.4

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CC-----CCCCCcEEecccCCCccc----cCccccCCcCCcEEecccccccCc----c
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LS-----QARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLNR----L   78 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~-----~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~~~----l   78 (366)
                      .+++|++|++++|.+....+. +.     ..++|++|++++|.+...    ++..+..+++|++|++++|.+...    +
T Consensus       168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  247 (461)
T 1z7x_W          168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL  247 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred             hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence            358999999999986433221 22     356899999999866543    567778889999999999875432    2


Q ss_pred             -chhcCCCCCCcEEEeeCCCCCCc----chHHHhccCCCcEEcccccccccc--------cCCCCCCccEEecCCC----
Q 017788           79 -PSSLCELISLQRLYLSGCSNLRR----IPESIINLSKLELLHLKNCSKLLS--------LPELPCNLFSVGVRRC----  141 (366)
Q Consensus        79 -p~~i~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~L~~n~~l~~--------lp~l~~~L~~L~l~~~----  141 (366)
                       +..+..+++|++|++++|.+...    ++..+.++++|++|++++|.+...        +....++|+.|++++|    
T Consensus       248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA  327 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence             22333688999999999876543    677888889999999998865322        1112246777776553    


Q ss_pred             -------------cCCccccCcccccccCCCCCCce-----EEeCCcccCChhhhhc----chHHHHHHHHhhh
Q 017788          142 -------------TSLEALSSFSFLFSAMSPHNDQY-----FNLSDCLKLDQNELKG----IAEDALQKIQQKA  193 (366)
Q Consensus       142 -------------~~L~~L~l~~n~l~~~~~~~~~~-----l~~l~~l~L~~n~l~~----~~~~~~~~l~~L~  193 (366)
                                   ++|+.|+++.|.++...+..+..     ...++.+++++|.+++    .++..+.+++.|+
T Consensus       328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence                         67777888777765432222211     3467777788777765    4555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=1.4e-11  Score=104.26  Aligned_cols=102  Identities=17%  Similarity=0.073  Sum_probs=72.0

Q ss_pred             CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788           18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC   96 (366)
Q Consensus        18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n   96 (366)
                      +.+++++|++ +.+|. +.  ++|++|+|++|.+.+..|..++.+++|++|+|++|++.+..+..+..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            6778888776 55664 53  77888888888766666777788888888888888744433334567888888888887


Q ss_pred             CCCCcchHHHhccCCCcEEccccccc
Q 017788           97 SNLRRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        97 ~~~~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      .+.+..+..+..+++|++|+|++|++
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            66644444477778888888877743

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=4.4e-14  Score=122.19  Aligned_cols=133  Identities=23%  Similarity=0.179  Sum_probs=103.3

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      +.++++|++|+|++|.+.+ +|.+.++++|++|++++|.+ ..+|..+..+++|++|++++|.+ ..+| .+..+++|++
T Consensus        44 ~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQI-ASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEEC-CCHH-HHHHHHHSSE
T ss_pred             HhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcC-CcCC-ccccCCCCCE
Confidence            5678899999999999855 77888999999999999955 47888888889999999999985 4566 6889999999


Q ss_pred             EEeeCCCCCCcch--HHHhccCCCcEEcccccccccccCCCC--CCccEEecCCCcCCcccc
Q 017788           91 LYLSGCSNLRRIP--ESIINLSKLELLHLKNCSKLLSLPELP--CNLFSVGVRRCTSLEALS  148 (366)
Q Consensus        91 L~Ls~n~~~~~lp--~~i~~L~~L~~L~L~~n~~l~~lp~l~--~~L~~L~l~~~~~L~~L~  148 (366)
                      |++++|.+.. +|  ..+..+++|++|++++|.+....|...  .....-.+..+++|+.|+
T Consensus       120 L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          120 LYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             EECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999997664 44  478999999999999997766554300  000000145566676665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=2.9e-13  Score=128.10  Aligned_cols=107  Identities=11%  Similarity=0.075  Sum_probs=86.0

Q ss_pred             EEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC----ccccCCc-CCcEEecccccccCccchhcCCC-----CC
Q 017788           19 EIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH----SSIQYLS-KLVTLDMRLCKNLNRLPSSLCEL-----IS   87 (366)
Q Consensus        19 ~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p----~~i~~L~-~L~~L~L~~n~~~~~lp~~i~~l-----~~   87 (366)
                      .+++++|.+.+.+|. +...++|++|+|++|.+....+    ..+..++ +|++|+|++|.+....+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            468899999888887 5555669999999997655444    6778888 99999999999777667666654     99


Q ss_pred             CcEEEeeCCCCCCcchHHHhcc-----CCCcEEcccccccccc
Q 017788           88 LQRLYLSGCSNLRRIPESIINL-----SKLELLHLKNCSKLLS  125 (366)
Q Consensus        88 L~~L~Ls~n~~~~~lp~~i~~L-----~~L~~L~L~~n~~l~~  125 (366)
                      |++|+|++|.+....+..+...     ++|+.|++++|.+...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            9999999998877777755554     8999999999976443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.26  E-value=9e-14  Score=135.35  Aligned_cols=43  Identities=16%  Similarity=-0.099  Sum_probs=33.4

Q ss_pred             CcCCccccCccccccc----CCCCCCceEEeCCcccCChhhhhcchH
Q 017788          141 CTSLEALSSFSFLFSA----MSPHNDQYFNLSDCLKLDQNELKGIAE  183 (366)
Q Consensus       141 ~~~L~~L~l~~n~l~~----~~~~~~~~l~~l~~l~L~~n~l~~~~~  183 (366)
                      +++|+.|+++.|.++.    .++..+..++.++.+++++|.+++...
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~  415 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  415 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence            4588899999998874    466667778889999999998876433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=4.1e-11  Score=100.93  Aligned_cols=106  Identities=17%  Similarity=0.081  Sum_probs=72.8

Q ss_pred             CcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788           40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN  119 (366)
Q Consensus        40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~  119 (366)
                      .+.+++++| .+..+|..+.  ++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..|..+.++++|++|+|++
T Consensus        11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            567888876 3455676553  7788888888886666677777888888888888876655555567788888888888


Q ss_pred             cccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788          120 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus       120 n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      |++. .+|..       .+.++++|+.|+++.|.+..
T Consensus        88 N~l~-~~~~~-------~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLK-SIPRG-------AFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCC-CCCTT-------TTTTCTTCCEEECCSSCBCT
T ss_pred             CccC-EeCHH-------HhcCCCCCCEEEeCCCCCCC
Confidence            7543 33330       35566777777777666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.17  E-value=7.4e-11  Score=99.80  Aligned_cols=106  Identities=16%  Similarity=0.138  Sum_probs=71.6

Q ss_pred             CcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788           40 LENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN  119 (366)
Q Consensus        40 L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~  119 (366)
                      -+.+++++| .++.+|..+.  ++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..+.++++|+.|+|++
T Consensus        14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367778776 3466776554  7788888888886666677777888888888888766654444457778888888887


Q ss_pred             cccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788          120 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus       120 n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      |.+ +.+|..       .+.++++|+.|+++.|.+..
T Consensus        91 N~l-~~l~~~-------~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHL-KSIPRG-------AFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCC-CCCCTT-------TTTTCTTCSEEECCSSCBCT
T ss_pred             Ccc-ceeCHH-------HhccccCCCEEEeCCCCccc
Confidence            754 344431       25566677777777666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.11  E-value=8.8e-12  Score=116.28  Aligned_cols=169  Identities=15%  Similarity=0.173  Sum_probs=96.7

Q ss_pred             CCCCCEEeccCCCCCC-------------------CCCC--CCC--------CCCCcEEecccCCCccccCccccCCcCC
Q 017788           14 LVNLKEIDLSYSRQLK-------------------KLPD--LSQ--------ARNLENLLLKACSSLVETHSSIQYLSKL   64 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~-------------------~~p~--l~~--------l~~L~~L~L~~n~~~~~~p~~i~~L~~L   64 (366)
                      +++|++|||++|++..                   .+|+  |.+        +++|+.|+|.+ .+...-+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            7789999999888750                   2342  677        88999999987 4544445678889999


Q ss_pred             cEEecccccccCccchhcCCCCCCcEEEeeCC-----------------CC---------CCcchHHH------------
Q 017788           65 VTLDMRLCKNLNRLPSSLCELISLQRLYLSGC-----------------SN---------LRRIPESI------------  106 (366)
Q Consensus        65 ~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n-----------------~~---------~~~lp~~i------------  106 (366)
                      +.|++.+|.+...-+..|..+.++..+.+...                 ..         .+.++..+            
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            99999888754333334444444444333220                 00         00111110            


Q ss_pred             ----------------hccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC-
Q 017788          107 ----------------INLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD-  169 (366)
Q Consensus       107 ----------------~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~-  169 (366)
                                      ..+++|+.|++++|. +..+|..       .+.+|++|+.+.++.| +..+.+..|..+..|+ 
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~-------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDF-------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG  277 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTT-------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHh-------hhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence                            125667777776653 3444432       3556666666666555 4444455556666565 


Q ss_pred             cccCChhhhhcchHHHHHHHHhhh
Q 017788          170 CLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       170 ~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .+++.. .++.+.+.+|.+|++|+
T Consensus       278 ~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          278 TLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTEE
T ss_pred             EEEEcc-cceEEchhhhhCCccCC
Confidence            566654 45555555665555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=3.3e-12  Score=128.25  Aligned_cols=110  Identities=21%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCC-C-CCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCc----cchhcC
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQ-A-RNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNR----LPSSLC   83 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~-l-~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~----lp~~i~   83 (366)
                      ++++|++|+|++|.+....+. +.. + .+|++|+|++|....  .++..+..+++|++|+|++|.+.+.    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            467777777777765433322 333 2 237777777664211  1222234567777777777765433    333344


Q ss_pred             CCCCCcEEEeeCCCCC----CcchHHHhccCCCcEEccccccc
Q 017788           84 ELISLQRLYLSGCSNL----RRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        84 ~l~~L~~L~Ls~n~~~----~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      .+++|++|++++|...    ..++..+.++++|+.|++++|..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            5666777777666554    23444555666777777766643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=3.8e-10  Score=105.73  Aligned_cols=102  Identities=20%  Similarity=0.085  Sum_probs=74.5

Q ss_pred             EEeccCC-CCCCCCCCCCCCCCCcEEeccc-CCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCC
Q 017788           19 EIDLSYS-RQLKKLPDLSQARNLENLLLKA-CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGC   96 (366)
Q Consensus        19 ~L~Ls~n-~~~~~~p~l~~l~~L~~L~L~~-n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n   96 (366)
                      .++++++ ++ ..+|.+..+++|+.|+|++ |.+.+..+..+++|++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus        12 ~v~~~~~n~l-~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCC-CccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4677776 55 4466688888888888886 7555555567888888888888888866666667788888888888888


Q ss_pred             CCCCcchHHHhccCCCcEEccccccc
Q 017788           97 SNLRRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        97 ~~~~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      .+.+..+..+..++ |+.|+|.+|++
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCc
Confidence            76643334444444 88888888754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.97  E-value=9.2e-10  Score=103.08  Aligned_cols=106  Identities=17%  Similarity=0.034  Sum_probs=80.0

Q ss_pred             cEEecccCCCccccCccccCCcCCcEEeccc-ccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788           41 ENLLLKACSSLVETHSSIQYLSKLVTLDMRL-CKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN  119 (366)
Q Consensus        41 ~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~-n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~  119 (366)
                      ..++++++..+..+|. +..+++|+.|+|++ |.+.+..|..|.++++|+.|+|++|.+.+..|..|.+|++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3467777635667888 99999999999996 775555557788999999999999988887788899999999999999


Q ss_pred             cccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788          120 CSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus       120 n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      |++ ..+|..       .+..++ |+.|++..|.+..
T Consensus        90 N~l-~~~~~~-------~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NAL-ESLSWK-------TVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCC-SCCCST-------TTCSCC-CCEEECCSSCCCC
T ss_pred             Ccc-ceeCHH-------HcccCC-ceEEEeeCCCccC
Confidence            855 455541       122222 7777777776543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.97  E-value=2.4e-11  Score=121.94  Aligned_cols=111  Identities=18%  Similarity=0.162  Sum_probs=69.5

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CC-CCCCCcEEecccCCCccc--cCccccCCcCCcEEecccccccCccc----hhcCC
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LS-QARNLENLLLKACSSLVE--THSSIQYLSKLVTLDMRLCKNLNRLP----SSLCE   84 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~-~l~~L~~L~L~~n~~~~~--~p~~i~~L~~L~~L~L~~n~~~~~lp----~~i~~   84 (366)
                      .+++|++|+|++|.+....+. +. .+++|++|+|++|...+.  ++..+..+++|++|+|++|.+....+    .....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            356788888888876544333 43 577888888888744433  44445578888888888887544332    22336


Q ss_pred             CCCCcEEEeeCCC--CC-CcchHHHhccCCCcEEcccccccc
Q 017788           85 LISLQRLYLSGCS--NL-RRIPESIINLSKLELLHLKNCSKL  123 (366)
Q Consensus        85 l~~L~~L~Ls~n~--~~-~~lp~~i~~L~~L~~L~L~~n~~l  123 (366)
                      +++|++|++++|.  +. ..++..+.++++|+.|++++|...
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            6788888888775  11 112223345688888888877433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.92  E-value=1.3e-11  Score=117.27  Aligned_cols=165  Identities=16%  Similarity=0.104  Sum_probs=101.6

Q ss_pred             CCCCCEEeccCCCCCCCCC----C-CC-CCCCCcEEecccCCCccccCcc-ccCCcCCcEEecccccccCccchhc----
Q 017788           14 LVNLKEIDLSYSRQLKKLP----D-LS-QARNLENLLLKACSSLVETHSS-IQYLSKLVTLDMRLCKNLNRLPSSL----   82 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p----~-l~-~l~~L~~L~L~~n~~~~~~p~~-i~~L~~L~~L~L~~n~~~~~lp~~i----   82 (366)
                      +++|++|+|++|.+.....    . +. ..++|+.|+|++|.+...-... ...+++|+.|+|++|.+...-...+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4578888998888743221    1 22 3368889999888654332222 2346688889998887543322222    


Q ss_pred             -CCCCCCcEEEeeCCCCCC----cchHHHhccCCCcEEcccccccccc----cCCCCCCccEEecCCCcCCccccCcccc
Q 017788           83 -CELISLQRLYLSGCSNLR----RIPESIINLSKLELLHLKNCSKLLS----LPELPCNLFSVGVRRCTSLEALSSFSFL  153 (366)
Q Consensus        83 -~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~L~~n~~l~~----lp~l~~~L~~L~l~~~~~L~~L~l~~n~  153 (366)
                       ...++|++|+|++|.+..    .++..+..+++|++|+|++|.+...    ++.        .+..+++|+.|+++.|.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~--------~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA--------QLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH--------HGGGCSCCCEEECCSSC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH--------HHhcCCCcCeEECCCCC
Confidence             246788889998886543    2455567788888999888864321    122        23455677777777776


Q ss_pred             cccC----CCCCCceEEeCCcccCChhhhhcchHHHH
Q 017788          154 FSAM----SPHNDQYFNLSDCLKLDQNELKGIAEDAL  186 (366)
Q Consensus       154 l~~~----~~~~~~~l~~l~~l~L~~n~l~~~~~~~~  186 (366)
                      ++..    +...+.....++.++|++|.+.......+
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            6531    11222334567778888887765444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.91  E-value=5.4e-11  Score=119.33  Aligned_cols=102  Identities=17%  Similarity=0.157  Sum_probs=67.7

Q ss_pred             CCEEeccCCCCCC--CCCC-CCCCCCCcEEecccCCCccc----cCccccCCcCCcEEeccccccc----CccchhcCCC
Q 017788           17 LKEIDLSYSRQLK--KLPD-LSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNL----NRLPSSLCEL   85 (366)
Q Consensus        17 L~~L~Ls~n~~~~--~~p~-l~~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~----~~lp~~i~~l   85 (366)
                      |++|+|++|....  .++. ..++++|++|+|++|.....    ++.....+++|++|++++|.+.    ..++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            8888888775211  1122 23677888888888754333    3334556778888888877754    3455556677


Q ss_pred             CCCcEEEeeCCCCCCcchHHHhccCCCcEEcccc
Q 017788           86 ISLQRLYLSGCSNLRRIPESIINLSKLELLHLKN  119 (366)
Q Consensus        86 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~  119 (366)
                      ++|++|++++|.+. .+|..+.++++|+.|+++.
T Consensus       220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECB
T ss_pred             CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccc
Confidence            88888888887544 4777777788888888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=6.5e-09  Score=96.70  Aligned_cols=168  Identities=11%  Similarity=0.057  Sum_probs=120.6

Q ss_pred             CCCCCEEeccCCCCCCCCC-C-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccc-----------------
Q 017788           14 LVNLKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKN-----------------   74 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~-----------------   74 (366)
                      +++|+.|+|.. .+ ..++ . |.++++|+.|++.+|.....-+.+|.++.++..+.+.....                 
T Consensus       100 ~~~L~~l~L~~-~i-~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KI-KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TC-CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cc-cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            89999999988 55 4455 3 99999999999998876655566677777777666544110                 


Q ss_pred             c---------Cccchhc----------------------------CCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcc
Q 017788           75 L---------NRLPSSL----------------------------CELISLQRLYLSGCSNLRRIPESIINLSKLELLHL  117 (366)
Q Consensus        75 ~---------~~lp~~i----------------------------~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L  117 (366)
                      +         +.++..+                            ..+++|+.|+|++|.+...-+..|.++++|+.|++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            0         0111100                            02678999999988765444456888999999999


Q ss_pred             cccccccccCCCCCCccEEecCCCcCCc-cccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          118 KNCSKLLSLPELPCNLFSVGVRRCTSLE-ALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       118 ~~n~~l~~lp~l~~~L~~L~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      .+|  +..++..       .+.+|++|+ .+.+.. .++.+.+..|.++..|+.++++.|.++.+.+.+|.++++|+
T Consensus       258 ~~n--i~~I~~~-------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          258 PHN--LKTIGQR-------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             CTT--CCEECTT-------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             Ccc--cceehHH-------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence            886  5556642       578888888 888877 66665677888888888888888888888888887777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.76  E-value=2.1e-10  Score=114.98  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=69.2

Q ss_pred             CCCCCCEEeccCCCCCCC--CCC-CCCCCCCcEEecccCCCcccc----CccccCCcCCcEEeccccc--cc-Cccchhc
Q 017788           13 NLVNLKEIDLSYSRQLKK--LPD-LSQARNLENLLLKACSSLVET----HSSIQYLSKLVTLDMRLCK--NL-NRLPSSL   82 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~--~p~-l~~l~~L~~L~L~~n~~~~~~----p~~i~~L~~L~~L~L~~n~--~~-~~lp~~i   82 (366)
                      .+++|++|+|++|...+.  ++. +.++++|++|++++|.+....    +.....+++|+.|++++|.  +. ..++..+
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            477888888888843232  334 346788888888888643322    2223366788888888775  11 1222333


Q ss_pred             CCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEccccc
Q 017788           83 CELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC  120 (366)
Q Consensus        83 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n  120 (366)
                      ..+++|++|++++|.....+|..+.++++|+.|++..+
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            45688888888887555557777777788888875544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.72  E-value=5e-10  Score=106.32  Aligned_cols=135  Identities=18%  Similarity=0.053  Sum_probs=97.1

Q ss_pred             CCCCCEEeccCCCCCCCCC-CC-CCCCCCcEEecccCCCccccCccc-----cCCcCCcEEecccccccC----ccchhc
Q 017788           14 LVNLKEIDLSYSRQLKKLP-DL-SQARNLENLLLKACSSLVETHSSI-----QYLSKLVTLDMRLCKNLN----RLPSSL   82 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p-~l-~~l~~L~~L~L~~n~~~~~~p~~i-----~~L~~L~~L~L~~n~~~~----~lp~~i   82 (366)
                      .++|++|+|++|.+..... .+ ..+++|+.|+|++|.+...-...+     ...++|++|+|++|.+..    .++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            3689999999998743322 22 346789999999996654333333     246889999999998543    355666


Q ss_pred             CCCCCCcEEEeeCCCCCC----cchHHHhccCCCcEEcccccccccc----cCCCCCCccEEecCCCcCCccccCccccc
Q 017788           83 CELISLQRLYLSGCSNLR----RIPESIINLSKLELLHLKNCSKLLS----LPELPCNLFSVGVRRCTSLEALSSFSFLF  154 (366)
Q Consensus        83 ~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~L~~n~~l~~----lp~l~~~L~~L~l~~~~~L~~L~l~~n~l  154 (366)
                      ..+++|++|+|++|.+..    .++..+...++|+.|+|++|.+...    ++.        .+..+++|+.|+++.|.+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~--------~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR--------AAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH--------HHHHCSSCCEEECTTSSC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH--------HHHhCCCCCEEeccCCCC
Confidence            788999999999997653    2456677888999999999965432    222        234567888888888877


Q ss_pred             cc
Q 017788          155 SA  156 (366)
Q Consensus       155 ~~  156 (366)
                      +.
T Consensus       252 ~~  253 (372)
T 3un9_A          252 SS  253 (372)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.55  E-value=1.2e-07  Score=90.62  Aligned_cols=37  Identities=8%  Similarity=-0.066  Sum_probs=18.6

Q ss_pred             ecCCCcCCccccCcccccccCCCCCCceEEeCCcccCC
Q 017788          137 GVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLD  174 (366)
Q Consensus       137 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~  174 (366)
                      .+.+|++|+.+.+. +.+..+....|.++..|+.+.+.
T Consensus       295 aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          295 CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEEC
T ss_pred             HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEEC
Confidence            34555555555555 22444344455555555555553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.47  E-value=1.7e-08  Score=95.23  Aligned_cols=161  Identities=12%  Similarity=0.051  Sum_probs=91.6

Q ss_pred             CCCCCCEEeccCCCCC---------CCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhc
Q 017788           13 NLVNLKEIDLSYSRQL---------KKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSL   82 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~---------~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i   82 (366)
                      .+++|+.|.+......         +.++. +..+++|+.|.|++|... .++. +. +++|+.|+|..|.+.......+
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence            4567777777544221         11222 456788888888877322 2333 33 7788888888776443332333


Q ss_pred             C--CCCCCcEEEeeCCC--CCC-----cchHHH--hccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcc
Q 017788           83 C--ELISLQRLYLSGCS--NLR-----RIPESI--INLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS  151 (366)
Q Consensus        83 ~--~l~~L~~L~Ls~n~--~~~-----~lp~~i--~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~  151 (366)
                      .  .+++|++|+|+.+.  ..+     .+...+  ..+++|++|++.+|.+....+....     ....+++|+.|+++.
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la-----~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL-----ESDILPQLETMDISA  288 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH-----HCSSGGGCSEEECCS
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH-----hCccCCCCCEEECCC
Confidence            3  67888888886321  111     111112  2467888888887765432221000     112467788888888


Q ss_pred             cccccC----CCCCCceEEeCCcccCChhhhhcc
Q 017788          152 FLFSAM----SPHNDQYFNLSDCLKLDQNELKGI  181 (366)
Q Consensus       152 n~l~~~----~~~~~~~l~~l~~l~L~~n~l~~~  181 (366)
                      |.+...    ++..+..+..|+.|+|+.|.++..
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            876542    233334567788888888876643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.41  E-value=1.4e-07  Score=88.93  Aligned_cols=135  Identities=14%  Similarity=0.092  Sum_probs=91.0

Q ss_pred             CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCcccc--CCcCCcEEecccc--cccC-----ccchhc
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQ--YLSKLVTLDMRLC--KNLN-----RLPSSL   82 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~--~L~~L~~L~L~~n--~~~~-----~lp~~i   82 (366)
                      ..+++|+.|+|++|... .++.+. +++|+.|++..|.+.......+.  .+++|+.|+|+.+  ...+     .+...+
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            45689999999988422 344454 89999999998865443333343  7899999998632  1111     122223


Q ss_pred             --CCCCCCcEEEeeCCCCCCcchHHHh---ccCCCcEEcccccccccc----cCCCCCCccEEecCCCcCCccccCcccc
Q 017788           83 --CELISLQRLYLSGCSNLRRIPESII---NLSKLELLHLKNCSKLLS----LPELPCNLFSVGVRRCTSLEALSSFSFL  153 (366)
Q Consensus        83 --~~l~~L~~L~Ls~n~~~~~lp~~i~---~L~~L~~L~L~~n~~l~~----lp~l~~~L~~L~l~~~~~L~~L~l~~n~  153 (366)
                        ..+++|++|+|++|.+....+..+.   .+++|++|+|+.|.+...    ++.        .+.++++|+.|+++.|.
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~--------~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD--------HVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT--------THHHHTTCSEEECCSBB
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh--------hcccCCcceEEECCCCc
Confidence              2589999999999876654444454   478999999999865432    332        23456788889888886


Q ss_pred             ccc
Q 017788          154 FSA  156 (366)
Q Consensus       154 l~~  156 (366)
                      ++.
T Consensus       319 i~d  321 (362)
T 2ra8_A          319 LSD  321 (362)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=2.6e-07  Score=78.60  Aligned_cols=87  Identities=15%  Similarity=0.078  Sum_probs=38.6

Q ss_pred             CCCCCCCEEeccCC-CCCCC----CCC-CCCCCCCcEEecccCCCccc----cCccccCCcCCcEEecccccccCc----
Q 017788           12 KNLVNLKEIDLSYS-RQLKK----LPD-LSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLNR----   77 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n-~~~~~----~p~-l~~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~~~----   77 (366)
                      ...++|++|+|++| .+...    +.. +...++|++|+|++|.+...    +...+...++|++|+|++|.+...    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            44555666666655 44211    111 33445555555555543221    222333344555555555553221    


Q ss_pred             cchhcCCCCCCcEEEe--eCCCC
Q 017788           78 LPSSLCELISLQRLYL--SGCSN   98 (366)
Q Consensus        78 lp~~i~~l~~L~~L~L--s~n~~   98 (366)
                      +...+...++|++|+|  ++|.+
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHhCCCceEEEecCCCCCC
Confidence            2333444445555555  44443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=1.3e-06  Score=73.22  Aligned_cols=87  Identities=11%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             CCCcEEecccCCCccccCccccCCcCCcEEecccccccCc-cchhcCCC----CCCcEEEeeCCCC-CCcchHHHhccCC
Q 017788           38 RNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNR-LPSSLCEL----ISLQRLYLSGCSN-LRRIPESIINLSK  111 (366)
Q Consensus        38 ~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~-lp~~i~~l----~~L~~L~Ls~n~~-~~~lp~~i~~L~~  111 (366)
                      ..|+.|++++|.+...--..+..+++|+.|+|++|..++. --..+..+    ++|++|+|++|.. +..--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4578888888764433334566777888888888764432 11233343    3688888888753 3222244566777


Q ss_pred             CcEEccccccccc
Q 017788          112 LELLHLKNCSKLL  124 (366)
Q Consensus       112 L~~L~L~~n~~l~  124 (366)
                      |++|++++|..++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            8888777775443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.17  E-value=4.7e-06  Score=79.58  Aligned_cols=149  Identities=9%  Similarity=0.054  Sum_probs=87.7

Q ss_pred             CCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCcc-chhcCCCCCCcE
Q 017788           14 LVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSLCELISLQR   90 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~l-p~~i~~l~~L~~   90 (366)
                      +.+|+.+.|..+ + ..++.  |.++++|+.+.+..+ ....-..+|.+ .+|+.+.+. +. +..+ +..|.++++|+.
T Consensus       202 ~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~-i~~I~~~aF~~c~~L~~  275 (401)
T 4fdw_A          202 YAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG-VTNIASRAFYYCPELAE  275 (401)
T ss_dssp             TCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT-CCEECTTTTTTCTTCCE
T ss_pred             ecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC-ccEEChhHhhCCCCCCE
Confidence            467888888754 3 44552  888888888888764 33223344555 678888884 33 3333 456677888888


Q ss_pred             EEeeCCCCC-----CcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceE
Q 017788           91 LYLSGCSNL-----RRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYF  165 (366)
Q Consensus        91 L~Ls~n~~~-----~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l  165 (366)
                      +++.++...     ..-+..|.++++|+.+.+..+  +..++..       .+.+|++|+.+.+..+ ++.+....|..+
T Consensus       276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~-------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQG-------LLGGNRKVTQLTIPAN-VTQINFSAFNNT  345 (401)
T ss_dssp             EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred             EEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhh-------hhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence            888776432     123456777778888877642  3444431       3455555555555333 333334445555


Q ss_pred             EeCCcccCChhhhh
Q 017788          166 NLSDCLKLDQNELK  179 (366)
Q Consensus       166 ~~l~~l~L~~n~l~  179 (366)
                       .|+.+.+..|.+.
T Consensus       346 -~L~~l~l~~n~~~  358 (401)
T 4fdw_A          346 -GIKEVKVEGTTPP  358 (401)
T ss_dssp             -CCCEEEECCSSCC
T ss_pred             -CCCEEEEcCCCCc
Confidence             5555555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.17  E-value=2e-06  Score=77.30  Aligned_cols=66  Identities=21%  Similarity=0.214  Sum_probs=34.6

Q ss_pred             CCcCCcEEecccccccC--ccchhcCCCCCCcEEEeeCCCCCCcchHHHhccC--CCcEEcccccccccccC
Q 017788           60 YLSKLVTLDMRLCKNLN--RLPSSLCELISLQRLYLSGCSNLRRIPESIINLS--KLELLHLKNCSKLLSLP  127 (366)
Q Consensus        60 ~L~~L~~L~L~~n~~~~--~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~--~L~~L~L~~n~~l~~lp  127 (366)
                      ++++|+.|+|++|++.+  .+|..+..+++|+.|+|++|.+.+.  ..+..+.  +|+.|+|++|.+.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            45566666666665443  3344445566666666666654432  2233333  56666666665544443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.11  E-value=1.4e-06  Score=78.30  Aligned_cols=100  Identities=20%  Similarity=0.158  Sum_probs=71.4

Q ss_pred             CCCCE--EeccCCCCCCCCCC-----CCCCCCCcEEecccCCCcc--ccCccccCCcCCcEEecccccccCccchhcCCC
Q 017788           15 VNLKE--IDLSYSRQLKKLPD-----LSQARNLENLLLKACSSLV--ETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCEL   85 (366)
Q Consensus        15 ~~L~~--L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~n~~~~--~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l   85 (366)
                      +.|+.  ++++.|+. ..++.     ..++++|+.|+|++|.+.+  .+|..++.+++|+.|+|++|.+.+.  ..+..+
T Consensus       141 p~L~~~~l~l~~N~~-~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l  217 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRR-SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI  217 (267)
T ss_dssp             HHHHHTTCCCCTTSH-HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred             cchhhcCccccCCHH-HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence            34444  56666642 22221     2467899999999997765  5567778899999999999985543  233444


Q ss_pred             C--CCcEEEeeCCCCCCcch-------HHHhccCCCcEEcc
Q 017788           86 I--SLQRLYLSGCSNLRRIP-------ESIINLSKLELLHL  117 (366)
Q Consensus        86 ~--~L~~L~Ls~n~~~~~lp-------~~i~~L~~L~~L~L  117 (366)
                      .  +|++|+|++|.+.+.+|       ..+..+++|+.||=
T Consensus       218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            4  99999999999877665       34778999999973

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.03  E-value=9.3e-07  Score=75.12  Aligned_cols=87  Identities=13%  Similarity=0.090  Sum_probs=43.0

Q ss_pred             CCCCCCcEEecccC-CCcc----ccCccccCCcCCcEEecccccccC----ccchhcCCCCCCcEEEeeCCCCCCc----
Q 017788           35 SQARNLENLLLKAC-SSLV----ETHSSIQYLSKLVTLDMRLCKNLN----RLPSSLCELISLQRLYLSGCSNLRR----  101 (366)
Q Consensus        35 ~~l~~L~~L~L~~n-~~~~----~~p~~i~~L~~L~~L~L~~n~~~~----~lp~~i~~l~~L~~L~Ls~n~~~~~----  101 (366)
                      ...++|++|+|++| .+..    .+...+...++|++|+|++|.+..    .+...+...++|++|+|++|.+...    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            34556666666665 3322    123334445566666666665322    1233333445566666666654332    


Q ss_pred             chHHHhccCCCcEEcc--cccc
Q 017788          102 IPESIINLSKLELLHL--KNCS  121 (366)
Q Consensus       102 lp~~i~~L~~L~~L~L--~~n~  121 (366)
                      +...+...++|++|+|  ++|.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSC
T ss_pred             HHHHHHhCCCceEEEecCCCCC
Confidence            2334444455666666  4443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=3.8e-06  Score=70.45  Aligned_cols=87  Identities=16%  Similarity=0.301  Sum_probs=64.5

Q ss_pred             CCCCEEeccCCCCCCC-CCCCCCCCCCcEEecccCCCcccc-CccccCC----cCCcEEecccccccCc-cchhcCCCCC
Q 017788           15 VNLKEIDLSYSRQLKK-LPDLSQARNLENLLLKACSSLVET-HSSIQYL----SKLVTLDMRLCKNLNR-LPSSLCELIS   87 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~-~p~l~~l~~L~~L~L~~n~~~~~~-p~~i~~L----~~L~~L~L~~n~~~~~-lp~~i~~l~~   87 (366)
                      ..|+.||+++|.++.. +..+.++++|+.|+|++|..++.. -..+..+    ++|++|+|++|..++. --..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3699999999986533 334789999999999999755432 1234544    4799999999975442 2234668999


Q ss_pred             CcEEEeeCCCCCCc
Q 017788           88 LQRLYLSGCSNLRR  101 (366)
Q Consensus        88 L~~L~Ls~n~~~~~  101 (366)
                      |++|+|++|.....
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            99999999976654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.11  E-value=0.0016  Score=61.53  Aligned_cols=81  Identities=12%  Similarity=0.216  Sum_probs=34.0

Q ss_pred             CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCCCcEEEeeCCCCCCcchHHHhccCCC
Q 017788           34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLSKL  112 (366)
Q Consensus        34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L  112 (366)
                      |.++.+|+.+.+..+ ....-..++.++.+|+.+.+.. . +..++ ..|.++.+|+.++|..+ +...-...|.++.+|
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            444555555555432 2222223444455555555532 1 22222 23444555555555432 221122344455555


Q ss_pred             cEEccc
Q 017788          113 ELLHLK  118 (366)
Q Consensus       113 ~~L~L~  118 (366)
                      +.+.+.
T Consensus       337 ~~i~ip  342 (394)
T 4gt6_A          337 ERIAIP  342 (394)
T ss_dssp             CEEEEC
T ss_pred             CEEEEC
Confidence            555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.08  E-value=0.0025  Score=59.75  Aligned_cols=105  Identities=14%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCCCcEEEeeCCCCCCcchHHHhccCCC
Q 017788           34 LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLSKL  112 (366)
Q Consensus        34 l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L  112 (366)
                      +.++..|+.+.+..+ ....-..++.++.+|+.+.+..+  +..++ ..|.++.+|+.+.+.++.+...-...|.++.+|
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            555556666665543 22222334555666666665432  23333 244566666666665543332233455666666


Q ss_pred             cEEcccccccccccCCCCCCccEEecCCCcCCccccCc
Q 017788          113 ELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSF  150 (366)
Q Consensus       113 ~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~  150 (366)
                      +.+.+..+  ++.+...       .+.+|++|+.+.+.
T Consensus       313 ~~i~lp~~--l~~I~~~-------aF~~C~~L~~i~ip  341 (379)
T 4h09_A          313 SSVTLPTA--LKTIQVY-------AFKNCKALSTISYP  341 (379)
T ss_dssp             CEEECCTT--CCEECTT-------TTTTCTTCCCCCCC
T ss_pred             CEEEcCcc--ccEEHHH-------HhhCCCCCCEEEEC
Confidence            66665432  2333321       35566666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.70  E-value=0.0022  Score=60.15  Aligned_cols=125  Identities=10%  Similarity=0.041  Sum_probs=53.1

Q ss_pred             CCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCcc-chhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcE
Q 017788           36 QARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL-PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLEL  114 (366)
Q Consensus        36 ~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~l-p~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~  114 (366)
                      ...+|+.+.+..+ ....-..++.++.+|+.+.+..+  +..+ ...+.++.+|+.+.+..+ ....-...|.++++|+.
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            3444444444332 22222233445555555555432  2222 223445555555555432 22111233455555665


Q ss_pred             EcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccC
Q 017788          115 LHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKL  173 (366)
Q Consensus       115 L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L  173 (366)
                      +.+.++ .++.++..       .+.+|.+|+.+.+..+ ++.+-...|.++..|+.+.+
T Consensus       291 i~l~~~-~i~~I~~~-------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          291 VVMDNS-AIETLEPR-------VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EEECCT-TCCEECTT-------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccc-ccceehhh-------hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            555443 22333321       3455666666555432 33323334444444444444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.64  E-value=0.0065  Score=57.28  Aligned_cols=83  Identities=16%  Similarity=0.046  Sum_probs=43.5

Q ss_pred             hcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC
Q 017788           81 SLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH  160 (366)
Q Consensus        81 ~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~  160 (366)
                      .+..+.+|+.+.+..+ ....-...|.++++|+.+++..+  ++.++..       .+.+|++|+.+.+..+ ++.+-..
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------aF~~c~~L~~i~lp~~-l~~I~~~  360 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKR-------SFRGCTSLSNINFPLS-LRKIGAN  360 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TTTTCTTCCEECCCTT-CCEECTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHH-------hccCCCCCCEEEECcc-ccEehHH
Confidence            3445666666666543 22222334566666666666432  3333321       4566777777766554 4443444


Q ss_pred             CCceEEeCCcccCC
Q 017788          161 NDQYFNLSDCLKLD  174 (366)
Q Consensus       161 ~~~~l~~l~~l~L~  174 (366)
                      .|.++..|+.+++.
T Consensus       361 aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          361 AFQGCINLKKVELP  374 (394)
T ss_dssp             TBTTCTTCCEEEEE
T ss_pred             HhhCCCCCCEEEEC
Confidence            55555555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.59  E-value=0.0072  Score=57.00  Aligned_cols=125  Identities=10%  Similarity=0.083  Sum_probs=79.6

Q ss_pred             cCCCCCCCEEeccCCCCCCCCC--CCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLP--DLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELIS   87 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~   87 (366)
                      +.++..|+.+.+..+..  .++  .|..+..|+.+......   .....+..+.+|+.+.+..+  +..++ ..|.++.+
T Consensus       249 f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~  321 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTS  321 (394)
T ss_dssp             TTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTT
T ss_pred             ccccccceeEEcCCCcc--eeeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCCCC
Confidence            34455555555554432  222  25556666665554431   12235677888888888754  34443 46778999


Q ss_pred             CcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccc
Q 017788           88 LQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSF  152 (366)
Q Consensus        88 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n  152 (366)
                      |+.+++..+ +...-...|.++++|+.+.+..+  +..++..       .+.+|++|+.+.+..+
T Consensus       322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-------AFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TBTTCTTCCEEEEEGG
T ss_pred             CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH-------HhhCCCCCCEEEECCC
Confidence            999999753 33333467889999999998765  4455442       6789999999987654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.41  E-value=0.007  Score=57.09  Aligned_cols=109  Identities=9%  Similarity=0.061  Sum_probs=55.9

Q ss_pred             ccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccE
Q 017788           56 SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFS  135 (366)
Q Consensus        56 ~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~  135 (366)
                      .+|.++.+|+.+.+..+. ...-...+.++.+|+.+.+... ....-...|.++.+|+.+.+..+  ++.+...      
T Consensus       259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~------  328 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG--ITQILDD------  328 (394)
T ss_dssp             TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTT------
T ss_pred             ceeeecccccEEeccccc-ceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc--ccEehHh------
Confidence            345666667776665432 2222334556667777766532 22222234566667777666543  3333321      


Q ss_pred             EecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChh
Q 017788          136 VGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN  176 (366)
Q Consensus       136 L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n  176 (366)
                       .+.+|++|+.+.+..+ ++.+-...|.++..|+.+++..+
T Consensus       329 -aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          329 -AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             -TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             -HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence             4556666666665433 33333344555555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.43  E-value=0.015  Score=49.45  Aligned_cols=62  Identities=18%  Similarity=0.162  Sum_probs=26.6

Q ss_pred             CCCCCCEEeccCC-CCCCC----CC-CCCCCCCCcEEecccCCCccc----cCccccCCcCCcEEecccccc
Q 017788           13 NLVNLKEIDLSYS-RQLKK----LP-DLSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKN   74 (366)
Q Consensus        13 ~l~~L~~L~Ls~n-~~~~~----~p-~l~~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~   74 (366)
                      +-+.|++|+|++| .+...    +- .+..-+.|+.|+|++|.+...    +.+.+..-+.|+.|+|++|.+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            3455666666553 33110    11 133344555555555543221    112222334455555555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.53  E-value=0.076  Score=41.69  Aligned_cols=37  Identities=16%  Similarity=-0.023  Sum_probs=21.8

Q ss_pred             CCcEEecccccccCccchhcCCCCCCcEEEeeCCCCC
Q 017788           63 KLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNL   99 (366)
Q Consensus        63 ~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~   99 (366)
                      +|++|+|++|.+...-+..|..+++|+.|+|++|...
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4666666666633322334456677777777777543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.44  E-value=0.049  Score=42.82  Aligned_cols=54  Identities=22%  Similarity=0.225  Sum_probs=40.4

Q ss_pred             EEecccccccC--ccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEccccccc
Q 017788           66 TLDMRLCKNLN--RLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        66 ~L~L~~n~~~~--~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      .++.+++. ++  .+|..+  -.+|++|+|++|.+...-+..|..+++|+.|+|++|..
T Consensus        12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            56667666 44  777643  34799999999987755556678899999999998853

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.73  E-value=0.047  Score=46.27  Aligned_cols=63  Identities=8%  Similarity=-0.013  Sum_probs=29.3

Q ss_pred             CCCCcEEecccCCCccc-----cCccccCCcCCcEEecccccccC----ccchhcCCCCCCcEEEeeCCCCC
Q 017788           37 ARNLENLLLKACSSLVE-----THSSIQYLSKLVTLDMRLCKNLN----RLPSSLCELISLQRLYLSGCSNL   99 (366)
Q Consensus        37 l~~L~~L~L~~n~~~~~-----~p~~i~~L~~L~~L~L~~n~~~~----~lp~~i~~l~~L~~L~Ls~n~~~   99 (366)
                      -+.|+.|+|++|..++.     +-..+..-+.|+.|+|++|.+..    .+.+.+..-+.|++|+|+.|.+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34566666655312221     22333444556666666655321    22233333455666666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 68  DMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLP 127
           D+R  +    LP  L +L  L  L +S  +    IP+   NL + ++    N   L   P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

Query: 128 ELPC 131
              C
Sbjct: 309 LPAC 312

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 48  CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESII 107
            +S  E  S       L  L++     L  LP+       L+RL  S   +L  +PE   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPP---RLERLIASFN-HLAEVPELPQ 324

Query: 108 NLSKLELLHLKNCSKLLSLPELPCNL 133
           NL +L + +    + L   P++P ++
Sbjct: 325 NLKQLHVEY----NPLREFPDIPESV 346

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 26/139 (18%)

Query: 11  LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLL--------------------KACSS 50
           L +L NL ++DL+ + Q+  L  LS    L  L L                    +   +
Sbjct: 237 LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295

Query: 51  LVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLS 110
            +E  S I  L  L  L   L  N     S +  L  LQRL+ +   N      S+ NL+
Sbjct: 296 QLEDISPISNLKNLTYLT--LYFNNISDISPVSSLTKLQRLFFAN--NKVSDVSSLANLT 351

Query: 111 KLELLHLKNCSKLLSLPEL 129
            +  L   +  ++  L  L
Sbjct: 352 NINWLSAGHN-QISDLTPL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 56  SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELL 115
           S +  L+KL  L      N     SSL  L ++  L       +  +   + NL+++  L
Sbjct: 323 SPVSSLTKLQRLF--FANNKVSDVSSLANLTNINWLSAGHN-QISDLTP-LANLTRITQL 378

Query: 116 HLKN 119
            L +
Sbjct: 379 GLND 382

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.52
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.09
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.08
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.86
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.79
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.05
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.24
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.03

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=4.4e-20  Score=169.30  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=77.0

Q ss_pred             cCCCCCCCEEeccC-CCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCC
Q 017788           11 LKNLVNLKEIDLSY-SRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~-n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L   88 (366)
                      ++++++|++|+|++ |.+.+.+|. |+++++|++|+|++|.+.+..+..+..+.+|+++++++|.....+|..++.++.|
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            45666777777764 556666664 6677777777777766666666666666777777777776666677777777777


Q ss_pred             cEEEeeCCCCCCcchHHHhccCCC-cEEcccccccccccC
Q 017788           89 QRLYLSGCSNLRRIPESIINLSKL-ELLHLKNCSKLLSLP  127 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp~~i~~L~~L-~~L~L~~n~~l~~lp  127 (366)
                      +++++++|.+.+.+|..+..+.++ +.+++++|++.+..|
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             ceeecccccccccccccccccccccccccccccccccccc
Confidence            777777776666667666666654 556666655444333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.4e-17  Score=144.66  Aligned_cols=160  Identities=20%  Similarity=0.032  Sum_probs=89.9

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      ++|++|+|++|++.+..++ |.++++|++|+|++|.+ +.+| .++.+++|++|+|++|+ +...+..+..+++|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQ-VDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEE-CCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-cccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            3577777777766433333 66777777777777643 3444 34567777777777766 3444556666777777777


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCCC-C---CCccEE-------------ecCCCcCCccccCccccccc
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL-P---CNLFSV-------------GVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l-~---~~L~~L-------------~l~~~~~L~~L~l~~n~l~~  156 (366)
                      ++|......+..+..+.+++.|++++|.+ ..+|.. .   .+++.+             .+.++++|+.|+++.|+++.
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l-~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cccccceeecccccccccccccccccccc-ceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence            76665555555555666666666666533 233321 0   111111             23344555566666665554


Q ss_pred             CCCCCCceEEeCCcccCChhhhh
Q 017788          157 MSPHNDQYFNLSDCLKLDQNELK  179 (366)
Q Consensus       157 ~~~~~~~~l~~l~~l~L~~n~l~  179 (366)
                       +|..+..+..++.++|++|++.
T Consensus       187 -lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         187 -IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             -CCTTTTTTCCCSEEECCSCCBC
T ss_pred             -cChhHCCCCCCCEEEecCCCCC
Confidence             4444445555555666655543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.68  E-value=2.1e-18  Score=157.97  Aligned_cols=178  Identities=16%  Similarity=0.123  Sum_probs=136.3

Q ss_pred             CCCCEEeccCCCCCC--CCCC-CCCCCCCcEEeccc-CCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           15 VNLKEIDLSYSRQLK--KLPD-LSQARNLENLLLKA-CSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~--~~p~-l~~l~~L~~L~L~~-n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      .+++.|+|+++.+.+  .+|+ ++++++|++|+|++ |.+.+.+|++|++|++|++|+|++|++.+..|..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999998876  3665 99999999999997 6677799999999999999999999988888888999999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCC----CCccEEecC---------------------------
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELP----CNLFSVGVR---------------------------  139 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~----~~L~~L~l~---------------------------  139 (366)
                      +++++|.....+|..++++++|+.+++++|...+.+|...    ..++.+.+.                           
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999998887887532    112222211                           


Q ss_pred             ---------CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          140 ---------RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       140 ---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                               .+++++.++++.+.+.+.+ ..+..+..++.++|++|.+++.+|..++++++|+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~  271 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCC
Confidence                     2344555555555555422 2345555666666777777666666666555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=143.47  Aligned_cols=171  Identities=21%  Similarity=0.166  Sum_probs=118.4

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcccc-------------------------CccccCCcCCcEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVET-------------------------HSSIQYLSKLVTLD   68 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~-------------------------p~~i~~L~~L~~L~   68 (366)
                      +++++|+|++|++.+..+. |.++++|++|++++|.+....                         +..++++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            4577888888877543333 778888888888877543322                         33455666777777


Q ss_pred             cccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCcccc
Q 017788           69 MRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS  148 (366)
Q Consensus        69 L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~  148 (366)
                      +++|......+..+..+++|+.+++++|.+....+..+..+++|+.|++++|.+....+.        .+.++++|+.+.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~--------~f~~l~~L~~l~  183 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER--------AFRGLHSLDRLL  183 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh--------hhccccccchhh
Confidence            776665444444555666677777777665544455566667777777777644322233        456788888899


Q ss_pred             CcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhhh
Q 017788          149 SFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       149 l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      ++.|.+++..|..+..+..+..+++++|.+.++.+.++.+++.|+
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            999988887888888888888999999999888888887766664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5e-17  Score=145.38  Aligned_cols=161  Identities=18%  Similarity=0.105  Sum_probs=111.3

Q ss_pred             CCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      +...+.+++.+++.++ .+|. +.  ++|++|+|++|.+.+..+.++.++++|++|+|++|+ ++.+|. ++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc-cccccccccc
Confidence            4566777899998885 5664 64  589999999997665555789999999999999998 556764 5789999999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCC---CCCccEEecC-------------CCcCCccccCcccccc
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPEL---PCNLFSVGVR-------------RCTSLEALSSFSFLFS  155 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l---~~~L~~L~l~-------------~~~~L~~L~l~~n~l~  155 (366)
                      +|++|.+. ..|..+.++++|+.|++++|...+..+..   ..+++.|.+.             .+++|+.++++.|+++
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            99999765 56778899999999999998654433331   1233333322             2334555555555555


Q ss_pred             cCCCCCCceEEeCCcccCChhhhh
Q 017788          156 AMSPHNDQYFNLSDCLKLDQNELK  179 (366)
Q Consensus       156 ~~~~~~~~~l~~l~~l~L~~n~l~  179 (366)
                      ...+..+..+..++.|+|++|.++
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccCccccccccccceeecccCCCc
Confidence            544444555555555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.1e-16  Score=138.95  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=94.6

Q ss_pred             EEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCC
Q 017788           19 EIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCS   97 (366)
Q Consensus        19 ~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~   97 (366)
                      .++.+++.+ ..+|. +.  +++++|+|++|.+.+..+.++.++++|++|++++|.+....+..+..+..++.++...+.
T Consensus        15 ~v~c~~~~L-~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGL-QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCC-SSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCC-CccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            456666665 56675 43  578999999997655445679999999999999998655444455556666666654433


Q ss_pred             CCCcc-hHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChh
Q 017788           98 NLRRI-PESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQN  176 (366)
Q Consensus        98 ~~~~l-p~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n  176 (366)
                      ....+ |..+.++++|++|++++|......+.        .+..+++|+.++++.|.++.+.+..++.+..++.+++++|
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N  163 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPG--------LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccchhhcccccCCEEecCCccccccccc--------ccchhcccchhhhccccccccChhHhccccchhhcccccC
Confidence            33333 45566666666666666644322222        2333444444445444444433344444444444455544


Q ss_pred             hhhcchHHHHHHHHhh
Q 017788          177 ELKGIAEDALQKIQQK  192 (366)
Q Consensus       177 ~l~~~~~~~~~~l~~L  192 (366)
                      .++.+.+.++.+++.|
T Consensus       164 ~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         164 RISSVPERAFRGLHSL  179 (284)
T ss_dssp             CCCEECTTTTTTCTTC
T ss_pred             cccccchhhhcccccc
Confidence            4444444444444433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.5e-15  Score=128.25  Aligned_cols=151  Identities=18%  Similarity=0.199  Sum_probs=123.2

Q ss_pred             CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      ..+.+|++|++++|.+ ..++++..+++|++|++++|.+. .+++ ++++++|++|++++|. ...++ .+.++++|+.|
T Consensus        37 ~~l~~l~~L~l~~~~i-~~l~~l~~l~nL~~L~Ls~N~l~-~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCC-CCccccccCCCcCcCcccccccc-Cccc-ccCCcccccccccccc-ccccc-ccccccccccc
Confidence            4578999999999988 46777999999999999999654 4443 8999999999999998 45555 47899999999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcc
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCL  171 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l  171 (366)
                      ++++|.....  ..+..+++|+.|++++|.+ ..++         .+.++++|+.|++..|.++. ++ .++.++.++.+
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l-~~~~---------~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L  177 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTI-SDIS---------ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERL  177 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCC-CCCG---------GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhh-cccc---------cccccccccccccccccccC-Cc-cccCCCCCCEE
Confidence            9999876543  3578899999999999854 4444         46788899999999998887 33 36788899999


Q ss_pred             cCChhhhhcc
Q 017788          172 KLDQNELKGI  181 (366)
Q Consensus       172 ~L~~n~l~~~  181 (366)
                      ++++|+++++
T Consensus       178 ~ls~N~i~~i  187 (199)
T d2omxa2         178 DISSNKVSDI  187 (199)
T ss_dssp             ECCSSCCCCC
T ss_pred             ECCCCCCCCC
Confidence            9999998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=9.7e-15  Score=132.55  Aligned_cols=162  Identities=16%  Similarity=0.119  Sum_probs=83.1

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCcc---------------
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL---------------   78 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~l---------------   78 (366)
                      +++++|+|++|++....+. |.++++|++|++++|......|..+..+++|++|++++|++. .+               
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchhhhhhhhhccc
Confidence            4566666666655333332 566666666666666555444555666666666666555421 11               


Q ss_pred             ---------------------------------chhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccc
Q 017788           79 ---------------------------------PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLS  125 (366)
Q Consensus        79 ---------------------------------p~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~  125 (366)
                                                       +..+..+++|+.+++++|.+. .+|..  .+++|+.|++++|.....
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEE
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCC
Confidence                                             112344556666666666433 33332  234555666655544444


Q ss_pred             cCCCC---CCccEE-------------ecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcc
Q 017788          126 LPELP---CNLFSV-------------GVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGI  181 (366)
Q Consensus       126 lp~l~---~~L~~L-------------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~  181 (366)
                      .+...   ..++.|             .+.++++|+.|++++|.++. +|..+..++.|+.++|++|+++.+
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCCccCcc
Confidence            33300   011111             23445566666666666655 455566666666666666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.52  E-value=9.5e-15  Score=123.88  Aligned_cols=127  Identities=18%  Similarity=0.172  Sum_probs=62.8

Q ss_pred             CEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCcccc-CccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788           18 KEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVET-HSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG   95 (366)
Q Consensus        18 ~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~-p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~   95 (366)
                      ++++.++++++ .+|. +.  +++++|+|++|.+...+ +..++++++|+.|+|++|.+....+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555542 3332 32  35555555555443322 33445555555555555555444455555555555555555


Q ss_pred             CCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccc
Q 017788           96 CSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFS  155 (366)
Q Consensus        96 n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~  155 (366)
                      |.+....|..|.++++|++|+|++|++....|.        .+.++++|+.++++.|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~--------~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG--------SFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT--------SSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHH--------HhcCCcccccccccccccc
Confidence            554443344455555555555555533222222        3444555555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.6e-14  Score=124.33  Aligned_cols=160  Identities=23%  Similarity=0.210  Sum_probs=119.1

Q ss_pred             CCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           13 NLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        13 ~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      .+.+|++|++++|.+ ..++++..+++|++|++++|.+. .++ .++.+++|++|++++|+ +..+| .+..+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i-~~l~~l~~l~~L~~L~L~~n~i~-~l~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCC-CCchhHhhCCCCCEEeCCCcccc-Ccc-ccccCcccccccccccc-ccccc-cccccccccccc
Confidence            467889999998887 45667888999999999998554 444 46888999999999887 45566 477889999999


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLK  172 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~  172 (366)
                      +++|... .+ ..+..+++|+.+++++|.. ...+         .+..+++|+.++++.|.+++ ++ .++.++.++.++
T Consensus       119 l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l-~~~~---------~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~  184 (210)
T d1h6ta2         119 LEHNGIS-DI-NGLVHLPQLESLYLGNNKI-TDIT---------VLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLY  184 (210)
T ss_dssp             CTTSCCC-CC-GGGGGCTTCCEEECCSSCC-CCCG---------GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred             ccccccc-cc-ccccccccccccccccccc-cccc---------cccccccccccccccccccc-cc-cccCCCCCCEEE
Confidence            9888654 33 3578888999999988854 3332         35567788888888888876 33 266778888888


Q ss_pred             CChhhhhcchHHHHHHHHhhh
Q 017788          173 LDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       173 L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      |++|.++.+.  .+.++++|+
T Consensus       185 Ls~N~i~~l~--~l~~l~~L~  203 (210)
T d1h6ta2         185 LSKNHISDLR--ALAGLKNLD  203 (210)
T ss_dssp             CCSSCCCBCG--GGTTCTTCS
T ss_pred             CCCCCCCCCh--hhcCCCCCC
Confidence            8888887652  355555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=5e-15  Score=125.60  Aligned_cols=108  Identities=18%  Similarity=0.077  Sum_probs=82.7

Q ss_pred             CCCCEEeccCCCCCCCCC-C-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEE
Q 017788           15 VNLKEIDLSYSRQLKKLP-D-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLY   92 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p-~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~   92 (366)
                      +++++|+|++|++...++ . |.++++|+.|+|++|.+....+..+..+++|++|+|++|++....|..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            478888888888865454 3 77888888888888877777777788888888888888875554455677888888888


Q ss_pred             eeCCCCCCcchHHHhccCCCcEEccccccc
Q 017788           93 LSGCSNLRRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        93 Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      |++|.+....|..|..+++|++|+|++|.+
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cCCccccccCHHHhcCCccccccccccccc
Confidence            888877665666778888888888888754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=3.2e-14  Score=129.06  Aligned_cols=171  Identities=22%  Similarity=0.236  Sum_probs=127.5

Q ss_pred             CCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           16 NLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      .++.+|-+++.+ ..+|. +.  +++++|+|++|.+ +.+| .+|.++++|++|++++|.+....|..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L-~~lP~~l~--~~l~~L~Ls~N~i-~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCC-CSCCCSCC--TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCC-CccCCCCC--CCCCEEECcCCcC-CCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            456777777776 46664 63  6899999999955 5555 57999999999999999977777888999999999999


Q ss_pred             eCCCCCCcch------------------------------------------------HHHhccCCCcEEcccccccccc
Q 017788           94 SGCSNLRRIP------------------------------------------------ESIINLSKLELLHLKNCSKLLS  125 (366)
Q Consensus        94 s~n~~~~~lp------------------------------------------------~~i~~L~~L~~L~L~~n~~l~~  125 (366)
                      ++|.+. .+|                                                ..+..+++|+.+++++|.+. .
T Consensus        87 ~~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          87 SKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             CSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             cCCccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence            998654 333                                                34566778888888887543 3


Q ss_pred             cC-CCCCCccEEecC-------------CCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHh
Q 017788          126 LP-ELPCNLFSVGVR-------------RCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQ  191 (366)
Q Consensus       126 lp-~l~~~L~~L~l~-------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~  191 (366)
                      +| ..+.+++.|++.             +++.++.|+++.|.+.+..+..+..+..|+.|+|++|.++.+ |.++.++++
T Consensus       165 l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~  243 (305)
T d1xkua_         165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKY  243 (305)
T ss_dssp             CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSS
T ss_pred             cCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccC
Confidence            44 345677777653             356677788888888887777778888888888888888755 445655655


Q ss_pred             hh
Q 017788          192 KA  193 (366)
Q Consensus       192 L~  193 (366)
                      |+
T Consensus       244 L~  245 (305)
T d1xkua_         244 IQ  245 (305)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=7.8e-14  Score=118.78  Aligned_cols=140  Identities=21%  Similarity=0.228  Sum_probs=111.1

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|++|++++|++. .++.++++++|++|++++|.. ..++ .++++++|+.|++++|.... + ..+..+++|+.
T Consensus        58 l~~l~nL~~L~Ls~N~l~-~~~~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~  132 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNR  132 (199)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred             cccCCCcCcCcccccccc-CcccccCCccccccccccccc-cccc-cccccccccccccccccccc-c-cccchhhhhHH
Confidence            567899999999999885 455699999999999999854 4444 58899999999999988544 3 34778999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCC
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSD  169 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  169 (366)
                      |++++|.+. .++ .+..+++|+.|++.+|++ ..++         .++++++|+.|++++|+++. ++ .++.++.|+
T Consensus       133 L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l-~~l~---------~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~  197 (199)
T d2omxa2         133 LELSSNTIS-DIS-ALSGLTSLQQLNFSSNQV-TDLK---------PLANLTTLERLDISSNKVSD-IS-VLAKLTNLE  197 (199)
T ss_dssp             EECCSSCCC-CCG-GGTTCTTCSEEECCSSCC-CCCG---------GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCS
T ss_pred             hhhhhhhhc-ccc-cccccccccccccccccc-cCCc---------cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCC
Confidence            999999754 444 588999999999999854 4444         46788999999999998876 33 344554444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=2.1e-14  Score=123.55  Aligned_cols=145  Identities=21%  Similarity=0.200  Sum_probs=118.5

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|++|+|++|++. .++.++.+++|++|++++|.+ ..+| .+..+++|+.|++++|.. ..++ .+..+++|+.
T Consensus        64 l~~l~~L~~L~L~~n~i~-~l~~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~~~~-~~~~-~l~~l~~l~~  138 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGI-SDIN-GLVHLPQLES  138 (210)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECTTSCC-CCCG-GGGGCTTCCE
T ss_pred             HhhCCCCCEEeCCCcccc-CccccccCccccccccccccc-cccc-cccccccccccccccccc-cccc-cccccccccc
Confidence            567899999999999885 466788999999999999855 4565 688999999999999984 4444 5778999999


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      +++++|.+..  +..+..+++|+.+++++|.+ ..++         .+.++++|+.|+++.|.++. ++ .+..++.|+.
T Consensus       139 l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l-~~i~---------~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~  204 (210)
T d1h6ta2         139 LYLGNNKITD--ITVLSRLTKLDTLSLEDNQI-SDIV---------PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV  204 (210)
T ss_dssp             EECCSSCCCC--CGGGGGCTTCSEEECCSSCC-CCCG---------GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred             cccccccccc--cccccccccccccccccccc-cccc---------cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCE
Confidence            9999987654  34578899999999999965 3444         46788999999999999887 54 4778888888


Q ss_pred             ccCC
Q 017788          171 LKLD  174 (366)
Q Consensus       171 l~L~  174 (366)
                      |+|+
T Consensus       205 L~Ls  208 (210)
T d1h6ta2         205 LELF  208 (210)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            8875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=2.5e-14  Score=124.34  Aligned_cols=162  Identities=16%  Similarity=0.166  Sum_probs=101.3

Q ss_pred             CCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           12 KNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      +.+.+|+.|++++|.+. .++++..+++|++|++++|.+.+. + .+..+++|+++++++|. .+.++ .+..+++|+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~~l~~l~~L~~L~ls~n~i~~~-~-~l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQITDL-A-PLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCC-G-GGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCC-cchhHhcCCCCcEeecCCceeecc-c-ccccccccccccccccc-ccccc-ccccccccccc
Confidence            44666777777777663 455677777777777777654332 2 26667777777777665 33443 35566777777


Q ss_pred             EeeCCCCCCcch--------------------HHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcc
Q 017788           92 YLSGCSNLRRIP--------------------ESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFS  151 (366)
Q Consensus        92 ~Ls~n~~~~~lp--------------------~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~  151 (366)
                      ++++|......+                    ..+.++++|+.|++++|... ..+         .+.++++|+.|+++.
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~---------~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLT---------PLANLSKLTTLKADD  182 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCG---------GGTTCTTCCEEECCS
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccc-cch---------hhcccccceecccCC
Confidence            776665433211                    22445556666666665332 221         356678889999998


Q ss_pred             cccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788          152 FLFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       152 n~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      |.++. ++. ++.++.|+.+++++|+++++.+  +.++++|
T Consensus       183 n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L  219 (227)
T d1h6ua2         183 NKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNL  219 (227)
T ss_dssp             SCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred             CccCC-Chh-hcCCCCCCEEECcCCcCCCCcc--cccCCCC
Confidence            88876 332 6778888999999998887653  3344443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.2e-13  Score=106.92  Aligned_cols=101  Identities=20%  Similarity=0.166  Sum_probs=83.7

Q ss_pred             CEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCC
Q 017788           18 KEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCS   97 (366)
Q Consensus        18 ~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~   97 (366)
                      |+|+|++|++ ..++.+.++++|++|++++|.+ ..+|+.++.+++|++|++++|. +..+| .+..+++|++|++++|.
T Consensus         1 R~L~Ls~n~l-~~l~~l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCC-SSCCCGGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCC-CCCcccccCCCCCEEECCCCcc-Ccchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc
Confidence            6899999998 4677799999999999999854 5788889999999999999998 45566 48899999999999997


Q ss_pred             CCCcc-hHHHhccCCCcEEccccccc
Q 017788           98 NLRRI-PESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        98 ~~~~l-p~~i~~L~~L~~L~L~~n~~  122 (366)
                      +...- ...+..+++|+.|++++|++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            65432 25688899999999999865

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=3.2e-13  Score=117.15  Aligned_cols=147  Identities=19%  Similarity=0.150  Sum_probs=113.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCcc------------
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRL------------   78 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~l------------   78 (366)
                      ++++++|++|++++|.+. .++.+.++++|+++++++|.. +.++ .+..+++|+.+++++|......            
T Consensus        59 l~~l~~L~~L~ls~n~i~-~~~~l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~  135 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY  135 (227)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred             HhcCCCCcEeecCCceee-ccccccccccccccccccccc-cccc-cccccccccccccccccccccchhccccchhhhh
Confidence            568999999999999885 444588999999999998854 4444 5788899999998877743321            


Q ss_pred             --------chhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCc
Q 017788           79 --------PSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSF  150 (366)
Q Consensus        79 --------p~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~  150 (366)
                              ...+..+++|+.|++++|.+....  .++++++|+.|++++|+ +..++         .+.++++|+.|+++
T Consensus       136 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~-l~~l~---------~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNK-ISDIS---------PLASLPNLIEVHLK  203 (227)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCCEEECT
T ss_pred             chhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCc-cCCCh---------hhcCCCCCCEEECc
Confidence                    123557788999999998765432  38899999999999995 45555         46788999999999


Q ss_pred             ccccccCCCCCCceEEeCCcccCC
Q 017788          151 SFLFSAMSPHNDQYFNLSDCLKLD  174 (366)
Q Consensus       151 ~n~l~~~~~~~~~~l~~l~~l~L~  174 (366)
                      .|+++.. + .++.+..|+.++++
T Consensus       204 ~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         204 NNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             TSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             CCcCCCC-c-ccccCCCCCEEEee
Confidence            9998874 3 26677788877775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.6e-13  Score=111.69  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=81.3

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccch-hcCCCCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS-SLCELISL   88 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~l~~L   88 (366)
                      +.+..+|++|+|++|++ ..+|+ +..+++|++|+|++|.+ ..++ .+..+++|++|++++|.+ ..+|. .+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~i-~~l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI-RKLD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCC-CEEC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCC-CccCccccccccCCEEECCCCCC-CccC-CcccCcchhhhhcccccc-cCCCcccccccccc
Confidence            55677888899998887 45566 57788899999998854 4553 578888888999988884 44544 34578888


Q ss_pred             cEEEeeCCCCCCcch--HHHhccCCCcEEcccccccccccC
Q 017788           89 QRLYLSGCSNLRRIP--ESIINLSKLELLHLKNCSKLLSLP  127 (366)
Q Consensus        89 ~~L~Ls~n~~~~~lp--~~i~~L~~L~~L~L~~n~~l~~lp  127 (366)
                      ++|++++|.+. .++  ..+..+++|++|++++|+. ...|
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i-~~~~  128 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV-TNKK  128 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG-GGST
T ss_pred             ccceecccccc-ccccccccccccccchhhcCCCcc-cccc
Confidence            88888888654 343  3577788888888888854 3444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=6.7e-13  Score=123.34  Aligned_cols=161  Identities=22%  Similarity=0.203  Sum_probs=109.3

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ....++|++|++++|.+ ..++.+..+++|+.|++++|...+ ++ .++.+++|++|++++|.+. .+++ +..++.++.
T Consensus       215 ~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~~~l~-~~~~-~~~~~~l~~  289 (384)
T d2omza2         215 LGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKLGANQIS-NISP-LAGLTALTN  289 (384)
T ss_dssp             GGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSE
T ss_pred             ccccCCCCEEECCCCCC-CCcchhhcccccchhccccCccCC-CC-cccccccCCEeeccCcccC-CCCc-ccccccccc
Confidence            34567888999998877 456668888899999999886543 33 3778888999999888744 3332 557777777


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      ++++.|.+.+ + ..+..+++++.|++++|++ ..++         .+..+++|+.|++++|.++. ++ .++.++.|+.
T Consensus       290 l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l-~~l~---------~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~  355 (384)
T d2omza2         290 LELNENQLED-I-SPISNLKNLTYLTLYFNNI-SDIS---------PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINW  355 (384)
T ss_dssp             EECCSSCCSC-C-GGGGGCTTCSEEECCSSCC-SCCG---------GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCE
T ss_pred             cccccccccc-c-cccchhcccCeEECCCCCC-CCCc---------ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCE
Confidence            7777776543 2 3466777777777777744 3333         24556677777777777665 33 4666777777


Q ss_pred             ccCChhhhhcchHHHHHHHHhh
Q 017788          171 LKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       171 l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      +++++|+++++.|  +.++++|
T Consensus       356 L~l~~N~l~~l~~--l~~l~~L  375 (384)
T d2omza2         356 LSAGHNQISDLTP--LANLTRI  375 (384)
T ss_dssp             EECCSSCCCBCGG--GTTCTTC
T ss_pred             EECCCCcCCCChh--hccCCCC
Confidence            7777777776654  4444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-13  Score=111.12  Aligned_cols=132  Identities=17%  Similarity=0.076  Sum_probs=99.8

Q ss_pred             CCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhcc
Q 017788           30 KLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINL  109 (366)
Q Consensus        30 ~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L  109 (366)
                      ..|.+.+...|+.|+|++|.+ ..++..+..+++|+.|+|++|. +..++ .+..+++|++|++++|.+....+..+..+
T Consensus        10 ~~~~~~n~~~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          10 QAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             TSCEEECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             hhHhccCcCcCcEEECCCCCC-CccCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhcccccccCCCccccccc
Confidence            345677888999999999954 5667667889999999999998 55664 58899999999999998765445556789


Q ss_pred             CCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCC----CCceEEeCCccc
Q 017788          110 SKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPH----NDQYFNLSDCLK  172 (366)
Q Consensus       110 ~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~l~~l~  172 (366)
                      ++|++|++++|++ ..++.+.      .+.++++|+.++++.|.++. .|.    .+..++.++.+|
T Consensus        87 ~~L~~L~L~~N~i-~~~~~l~------~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          87 PDLTELILTNNSL-VELGDLD------PLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSCCC-CCGGGGG------GGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             cccccceeccccc-ccccccc------ccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            9999999999954 4444311      45678899999999998876 332    244455555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.5e-12  Score=120.91  Aligned_cols=162  Identities=19%  Similarity=0.218  Sum_probs=83.8

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ...+++++.+++++|.+.+. +.+...++|+.|++++|.+. .+ +.+..+++|+.|++++|.+.+ ++. +..+++|++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~-~~~~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~  267 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTE  267 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSE
T ss_pred             cccccccceeeccCCccCCC-CcccccCCCCEEECCCCCCC-Cc-chhhcccccchhccccCccCC-CCc-ccccccCCE
Confidence            34455666666666655332 22444556666666665332 22 245556666666666665332 222 445666666


Q ss_pred             EEeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCc
Q 017788           91 LYLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDC  170 (366)
Q Consensus        91 L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  170 (366)
                      |++++|.+.+ ++ .+..+..++.++++.|... .++         .+..+++++.++++.|.+++. + .+..++.|+.
T Consensus       268 L~l~~~~l~~-~~-~~~~~~~l~~l~~~~n~l~-~~~---------~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~  333 (384)
T d2omza2         268 LKLGANQISN-IS-PLAGLTALTNLELNENQLE-DIS---------PISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQR  333 (384)
T ss_dssp             EECCSSCCCC-CG-GGTTCTTCSEEECCSSCCS-CCG---------GGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCE
T ss_pred             eeccCcccCC-CC-ccccccccccccccccccc-ccc---------ccchhcccCeEECCCCCCCCC-c-ccccCCCCCE
Confidence            6666654432 22 2455566666666655332 222         244455566666666665552 2 1455556666


Q ss_pred             ccCChhhhhcchHHHHHHHHhhh
Q 017788          171 LKLDQNELKGIAEDALQKIQQKA  193 (366)
Q Consensus       171 l~L~~n~l~~~~~~~~~~l~~L~  193 (366)
                      +++++|.++++.  .+.++++|+
T Consensus       334 L~L~~n~l~~l~--~l~~l~~L~  354 (384)
T d2omza2         334 LFFANNKVSDVS--SLANLTNIN  354 (384)
T ss_dssp             EECCSSCCCCCG--GGGGCTTCC
T ss_pred             EECCCCCCCCCh--hHcCCCCCC
Confidence            666666655432  244444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=3.8e-12  Score=99.68  Aligned_cols=104  Identities=21%  Similarity=0.198  Sum_probs=84.1

Q ss_pred             cEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCcEEccccc
Q 017788           41 ENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSGCSNLRRIPESIINLSKLELLHLKNC  120 (366)
Q Consensus        41 ~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n  120 (366)
                      |+|+|++|.+ +.++ .++.+++|++|++++|+ +..+|+.++.+++|++|++++|.+. .+| .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l-~~l~-~l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDL-TVLC-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCC-SSCC-CGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCC-CCCc-ccccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            6899999855 4555 58999999999999998 5678888999999999999999765 565 5899999999999998


Q ss_pred             ccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788          121 SKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus       121 ~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      ++ +.+|...      .+..|++|+.+++++|.++.
T Consensus        76 ~i-~~~~~~~------~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RL-QQSAAIQ------PLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CC-CSSSTTG------GGGGCTTCCEEECTTSGGGG
T ss_pred             cc-CCCCCch------hhcCCCCCCEEECCCCcCCc
Confidence            54 4454321      46778888888888888765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=3e-14  Score=121.37  Aligned_cols=106  Identities=25%  Similarity=0.240  Sum_probs=46.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcE
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQR   90 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~   90 (366)
                      ++.+++|++|+|++|++. .++.+.++++|++|+|++|. +..+|.....+++|++|++++|. +..++ .+..+++|++
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~l~~L~~  119 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-CCCCHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHHHHHSSE
T ss_pred             HhcccccceeECcccCCC-CcccccCCccccChhhcccc-ccccccccccccccccccccccc-ccccc-cccccccccc
Confidence            334444555555554442 33344444555555555442 23333333333445555555444 22232 2334444555


Q ss_pred             EEeeCCCCCCcch--HHHhccCCCcEEcccccc
Q 017788           91 LYLSGCSNLRRIP--ESIINLSKLELLHLKNCS  121 (366)
Q Consensus        91 L~Ls~n~~~~~lp--~~i~~L~~L~~L~L~~n~  121 (366)
                      |++++|.+. .++  ..+..+++|+.|++++|+
T Consensus       120 L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         120 LYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEESEEECC-CHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccchhc-cccccccccCCCccceeecCCCc
Confidence            555544332 222  234444455555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-12  Score=114.03  Aligned_cols=177  Identities=16%  Similarity=0.126  Sum_probs=114.2

Q ss_pred             CCCCEEeccCCCCCCCCCC-CCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccc-cccCccchhcCCCCCCcEE
Q 017788           15 VNLKEIDLSYSRQLKKLPD-LSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLC-KNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n-~~~~~lp~~i~~l~~L~~L   91 (366)
                      +++++|+|++|++....+. |.++++|++|++++|.....++ ..+.+++++++|.+..+ .+....+..+.++++|++|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            4799999999988543333 8999999999999997766554 46788999999988764 4344445567899999999


Q ss_pred             EeeCCCCCCcch-HHHhccCCCcEEcccccccccccCC-----CCCCccEEecCC------------CcCCccc-cCccc
Q 017788           92 YLSGCSNLRRIP-ESIINLSKLELLHLKNCSKLLSLPE-----LPCNLFSVGVRR------------CTSLEAL-SSFSF  152 (366)
Q Consensus        92 ~Ls~n~~~~~lp-~~i~~L~~L~~L~L~~n~~l~~lp~-----l~~~L~~L~l~~------------~~~L~~L-~l~~n  152 (366)
                      ++++|.+....+ ..+..+..|..+...++ .+..++.     ++..+..+.+.+            ..++..+ .+..|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCT
T ss_pred             ccchhhhccccccccccccccccccccccc-ccccccccccccccccceeeecccccccccccccccchhhhcccccccc
Confidence            999986653222 12333444444444443 2333331     223444444432            2233333 45666


Q ss_pred             ccccCCCCCCceEEeCCcccCChhhhhcchHHHHHHHHhh
Q 017788          153 LFSAMSPHNDQYFNLSDCLKLDQNELKGIAEDALQKIQQK  192 (366)
Q Consensus       153 ~l~~~~~~~~~~l~~l~~l~L~~n~l~~~~~~~~~~l~~L  192 (366)
                      .++.+.+..+.++..++.+++++|+++.+.+..+.+++.|
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence            7776555567888888888888888887665555554444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.6e-12  Score=116.72  Aligned_cols=84  Identities=29%  Similarity=0.313  Sum_probs=40.3

Q ss_pred             CCCCCEEeccCCCCCCC-CCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCc--cchhcCCCCCCc
Q 017788           14 LVNLKEIDLSYSRQLKK-LPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNR--LPSSLCELISLQ   89 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~-~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~--lp~~i~~l~~L~   89 (366)
                      ..+|++|||++|.+... ++. +..+++|++|+|++|......+..++.+++|++|++++|..++.  +......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34555555555544322 122 44555555555555544444444555555555555555543321  122223455555


Q ss_pred             EEEeeCCC
Q 017788           90 RLYLSGCS   97 (366)
Q Consensus        90 ~L~Ls~n~   97 (366)
                      +|++++|.
T Consensus       125 ~L~ls~c~  132 (284)
T d2astb2         125 ELNLSWCF  132 (284)
T ss_dssp             EEECCCCT
T ss_pred             cccccccc
Confidence            55555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.2e-10  Score=101.15  Aligned_cols=162  Identities=14%  Similarity=0.092  Sum_probs=102.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCCCC--CCCCCCCcEEecccC-CCccccCccccCCcCCcEEecccccccCccch--hcCCC
Q 017788           11 LKNLVNLKEIDLSYSRQLKKLPD--LSQARNLENLLLKAC-SSLVETHSSIQYLSKLVTLDMRLCKNLNRLPS--SLCEL   85 (366)
Q Consensus        11 l~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n-~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~--~i~~l   85 (366)
                      |.++++|++|++++|.+...++.  |.++++++.|.+..+ ......+..+.++++|+.|++++|.+.. .+.  .+..+
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~~~~~~~~l  127 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSL  127 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS-CCCCTTTCBS
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcc-cccccccccc
Confidence            67899999999999998776653  889999999998764 4445556678999999999999987543 322  12223


Q ss_pred             CCCcEEEeeCCCCCCcchHHHhccC-CCcEEcccccccccccCCCC---C-----------CccEE---ecCCCcCCccc
Q 017788           86 ISLQRLYLSGCSNLRRIPESIINLS-KLELLHLKNCSKLLSLPELP---C-----------NLFSV---GVRRCTSLEAL  147 (366)
Q Consensus        86 ~~L~~L~Ls~n~~~~~lp~~i~~L~-~L~~L~L~~n~~l~~lp~l~---~-----------~L~~L---~l~~~~~L~~L  147 (366)
                      +.+..+..+++.+...-+..+..++ .++.|++++|++. .++...   .           .++.+   .+.++++|+.|
T Consensus       128 ~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             cccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence            3333333333332222222333332 4555555544322 222110   0           11111   25778999999


Q ss_pred             cCcccccccCCCCCCceEEeCCcccCC
Q 017788          148 SSFSFLFSAMSPHNDQYFNLSDCLKLD  174 (366)
Q Consensus       148 ~l~~n~l~~~~~~~~~~l~~l~~l~L~  174 (366)
                      +++.|+++...+..+..+..|+.+++.
T Consensus       207 ~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         207 DISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             ECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ECCCCcCCccCHHHHcCCcccccCcCC
Confidence            999999998666677888777766654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.08  E-value=3.4e-10  Score=103.06  Aligned_cols=75  Identities=21%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             CCCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           14 LVNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        14 l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      .++|++|+|++|++. .+|+.  +.+|+.|++++|.. ..++.-   .+.|++|++++|. +..+|. ++.+++|++|++
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~--~~~L~~L~l~~n~l-~~l~~l---p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPEL--PQSLKSLLVDNNNL-KALSDL---PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCC--CTTCCEEECCSSCC-SCCCSC---CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCCCc-ccccc--hhhhhhhhhhhccc-chhhhh---ccccccccccccc-cccccc-hhhhccceeecc
Confidence            357888888888874 56652  24566666666532 222210   1246666666655 344443 345566666666


Q ss_pred             eCCC
Q 017788           94 SGCS   97 (366)
Q Consensus        94 s~n~   97 (366)
                      ++|.
T Consensus       128 ~~~~  131 (353)
T d1jl5a_         128 DNNS  131 (353)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            5553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.2e-11  Score=109.09  Aligned_cols=176  Identities=18%  Similarity=0.188  Sum_probs=119.3

Q ss_pred             CCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccc-cCccccCCcCCcEEecccccccCccchhcCCCCCCcEEEeeC
Q 017788           17 LKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVE-THSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYLSG   95 (366)
Q Consensus        17 L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~-~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~   95 (366)
                      +..+.++...............+|++|++++|..... +...+..+++|++|+|++|.+....+..++.+++|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            4455555544322223345667899999999865543 345578899999999999987777788889999999999999


Q ss_pred             CCCCCc--chHHHhccCCCcEEcccccccccc------cCCCCCCccEEecCC----------------CcCCccccCcc
Q 017788           96 CSNLRR--IPESIINLSKLELLHLKNCSKLLS------LPELPCNLFSVGVRR----------------CTSLEALSSFS  151 (366)
Q Consensus        96 n~~~~~--lp~~i~~L~~L~~L~L~~n~~l~~------lp~l~~~L~~L~l~~----------------~~~L~~L~l~~  151 (366)
                      |.....  +..-...+++|++|++++|..+..      +....++|+.|.+.+                |++|+.|+++.
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            865542  333456789999999999865431      222345777777654                56788888877


Q ss_pred             c-ccccCCCCCCceEEeCCcccCCh-hhhhcchHHHHHHHHhh
Q 017788          152 F-LFSAMSPHNDQYFNLSDCLKLDQ-NELKGIAEDALQKIQQK  192 (366)
Q Consensus       152 n-~l~~~~~~~~~~l~~l~~l~L~~-n~l~~~~~~~~~~l~~L  192 (366)
                      + .++......+..++.++.+++++ +.+++.....++++++|
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            5 35544445566677788888887 34544333334444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3e-10  Score=92.33  Aligned_cols=107  Identities=19%  Similarity=0.107  Sum_probs=70.6

Q ss_pred             CCCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccC-ccccCCcCCcEEecccccccCccchhcCCCCCCcEEEe
Q 017788           15 VNLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETH-SSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRLYL   93 (366)
Q Consensus        15 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p-~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~L   93 (366)
                      .....++.+++.....+..+.++++|+.|+++++..++.++ .+|.++++|+.|+|++|++...-|..|..+++|++|+|
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34556777776664433347777888888887665455554 45777888888888877754444566777788888888


Q ss_pred             eCCCCCCcchHHHhccCCCcEEccccccc
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      ++|.+. .+|..+....+|+.|+|++|++
T Consensus        88 s~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             cCCCCc-ccChhhhccccccccccCCCcc
Confidence            877654 4555444444677777777643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.00  E-value=2.5e-12  Score=109.22  Aligned_cols=131  Identities=16%  Similarity=0.151  Sum_probs=95.7

Q ss_pred             CCCCCEEeccCCC-CCCCCCC-CCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccchhcCCCCCCcEE
Q 017788           14 LVNLKEIDLSYSR-QLKKLPD-LSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLPSSLCELISLQRL   91 (366)
Q Consensus        14 l~~L~~L~Ls~n~-~~~~~p~-l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L   91 (366)
                      ...++.+++++.. ....+|. ++.+++|++|+|++|.+ ..++ .+..+++|++|+|++|. +..+|..+..+++|++|
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I-~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEEL   98 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEE-SCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEE
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCC-CCcc-cccCCccccChhhcccc-ccccccccccccccccc
Confidence            3445666766532 1234443 78899999999999854 4565 58899999999999998 56677666566789999


Q ss_pred             EeeCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCccccccc
Q 017788           92 YLSGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSA  156 (366)
Q Consensus        92 ~Ls~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~  156 (366)
                      ++++|.+. .+ +.+.++++|+.|++++|++ ..++...      .+.++++|+.|++++|.+..
T Consensus        99 ~l~~N~i~-~l-~~~~~l~~L~~L~L~~N~i-~~~~~~~------~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          99 WISYNQIA-SL-SGIEKLVNLRVLYMSNNKI-TNWGEID------KLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ECSEEECC-CH-HHHHHHHHSSEEEESEEEC-CCHHHHH------HHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccc-cc-ccccccccccccccccchh-ccccccc------cccCCCccceeecCCCcccc
Confidence            99998665 34 4588899999999999854 3333210      46778889999998888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.5e-10  Score=89.85  Aligned_cols=110  Identities=17%  Similarity=0.082  Sum_probs=78.8

Q ss_pred             CCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccCccc-hhcCCCCCCcEEEeeCCCCCCcchHHHhccCCCc
Q 017788           35 SQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLNRLP-SSLCELISLQRLYLSGCSNLRRIPESIINLSKLE  113 (366)
Q Consensus        35 ~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~~lp-~~i~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~  113 (366)
                      ......+.++.+++ .....|..+..+++|+.|++++|+.++.++ ..|.++++|+.|+|++|.+...-|..|..+++|+
T Consensus         5 C~c~~~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            34445667787775 445667788888999999998776566665 4678899999999999877666677788999999


Q ss_pred             EEcccccccccccCCCCCCccEEecCCCcCCccccCccccc
Q 017788          114 LLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLF  154 (366)
Q Consensus       114 ~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l  154 (366)
                      +|+|++|+ ++.+|.        .+....+|+.|+++.|.+
T Consensus        84 ~L~Ls~N~-l~~l~~--------~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          84 RLNLSFNA-LESLSW--------KTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             EEECCSSC-CSCCCS--------TTTCSCCCCEEECCSSCC
T ss_pred             ceeccCCC-CcccCh--------hhhccccccccccCCCcc
Confidence            99999985 456665        222233466666666644

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.68  E-value=2.5e-07  Score=83.49  Aligned_cols=56  Identities=29%  Similarity=0.351  Sum_probs=34.0

Q ss_pred             cCCCcEEcccccccccccCCCCCCccEEecCCCcCCccccCcccccccCCCCCCceEEeCCcccCChhhhhc
Q 017788          109 LSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALSSFSFLFSAMSPHNDQYFNLSDCLKLDQNELKG  180 (366)
Q Consensus       109 L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~L~~n~l~~  180 (366)
                      +++|++|++++|+ +..+|..+           ++|+.|+++.|+++. +|...   ..|+.+++++|+++.
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~~~-----------~~L~~L~L~~N~L~~-l~~~~---~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPALP-----------PRLERLIASFNHLAE-VPELP---QNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCC-----------TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS
T ss_pred             CCCCCEEECCCCc-cCcccccc-----------CCCCEEECCCCcCCc-ccccc---CCCCEEECcCCcCCC
Confidence            3567788887774 44666533           455566666666654 44432   345667777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.35  E-value=1.1e-08  Score=93.44  Aligned_cols=90  Identities=17%  Similarity=0.086  Sum_probs=42.0

Q ss_pred             CCCCCCcEEEeeCCCCCCc-----chHHHhccCCCcEEcccccccccc----cCCCCCCccEEecCCCcCCccccCcccc
Q 017788           83 CELISLQRLYLSGCSNLRR-----IPESIINLSKLELLHLKNCSKLLS----LPELPCNLFSVGVRRCTSLEALSSFSFL  153 (366)
Q Consensus        83 ~~l~~L~~L~Ls~n~~~~~-----lp~~i~~L~~L~~L~L~~n~~l~~----lp~l~~~L~~L~l~~~~~L~~L~l~~n~  153 (366)
                      ...+.|+.|++++|.+...     +...+..+++|+.|++++|.+...    +..        .+..+++|+.|+++.|.
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~--------~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--------ALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--------HGGGCTTCCEEECTTCC
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc--------cccccccchhhhhhcCc
Confidence            3445555555555543321     112234455556666655543211    111        23345667777777766


Q ss_pred             cccCCC----CCCc--eEEeCCcccCChhhhhc
Q 017788          154 FSAMSP----HNDQ--YFNLSDCLKLDQNELKG  180 (366)
Q Consensus       154 l~~~~~----~~~~--~l~~l~~l~L~~n~l~~  180 (366)
                      ++..-.    ..+.  ....+..+++++|.+..
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            543100    0011  12346667777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6e-08  Score=78.77  Aligned_cols=128  Identities=20%  Similarity=0.116  Sum_probs=75.6

Q ss_pred             CCCEEeccCCCCCCCCCCCCCCCCCcEEecccCCCccccCccccCCcCCcEEecccccccC--ccchhcCCCCCCcEEEe
Q 017788           16 NLKEIDLSYSRQLKKLPDLSQARNLENLLLKACSSLVETHSSIQYLSKLVTLDMRLCKNLN--RLPSSLCELISLQRLYL   93 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~~~~~p~~i~~L~~L~~L~L~~n~~~~--~lp~~i~~l~~L~~L~L   93 (366)
                      ..+.|+++....   .+++..+..+..+....+ ....++.....+++|++|+|++|++..  .++..+..+++|+.|+|
T Consensus        23 ~~~~Ldls~l~~---~~~l~~~~~~~~l~~~~~-~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          23 SQQALDLKGLRS---DPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SSCCBCCCCCSS---CTTTTTTTCCCCTTSHHH-HHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hhCeeecccCCC---Cchhhhccchhhcchhhh-HhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            456677765543   344444444554444433 333344445678899999999998543  23455667899999999


Q ss_pred             eCCCCCCcchHHHhccCCCcEEcccccccccccCCCCCCccEEecCCCcCCcccc
Q 017788           94 SGCSNLRRIPESIINLSKLELLHLKNCSKLLSLPELPCNLFSVGVRRCTSLEALS  148 (366)
Q Consensus        94 s~n~~~~~lp~~i~~L~~L~~L~L~~n~~l~~lp~l~~~L~~L~l~~~~~L~~L~  148 (366)
                      ++|.+...-+-...+..+|+.|++++|++........ ..+...+..+++|+.|+
T Consensus        99 s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~-~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          99 SGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS-TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH-HHHHHHHTTSTTCCEET
T ss_pred             ccCccccchhhhhhhccccceeecCCCCcCcCcccch-hHHHHHHHHCCCCCEEC
Confidence            9987664333233344578899999987654333200 00001244567777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.21  E-value=1.4e-07  Score=85.75  Aligned_cols=43  Identities=16%  Similarity=0.112  Sum_probs=23.4

Q ss_pred             CCCcCCccccCcccccccC----CCCCCceEEeCCcccCChhhhhcc
Q 017788          139 RRCTSLEALSSFSFLFSAM----SPHNDQYFNLSDCLKLDQNELKGI  181 (366)
Q Consensus       139 ~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~l~~l~L~~n~l~~~  181 (366)
                      ..+++|+.|+++.|.++..    +...+.....++.+++++|.+.+.
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            3455666677766654321    112233455566677777766543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.9e-07  Score=87.29  Aligned_cols=107  Identities=17%  Similarity=0.257  Sum_probs=70.3

Q ss_pred             CCCEEeccCCCCCCCC-CC-CCCCCCCcEEecccCCCcc----ccCccccCCcCCcEEecccccccC----ccchhcC-C
Q 017788           16 NLKEIDLSYSRQLKKL-PD-LSQARNLENLLLKACSSLV----ETHSSIQYLSKLVTLDMRLCKNLN----RLPSSLC-E   84 (366)
Q Consensus        16 ~L~~L~Ls~n~~~~~~-p~-l~~l~~L~~L~L~~n~~~~----~~p~~i~~L~~L~~L~L~~n~~~~----~lp~~i~-~   84 (366)
                      +|++||++++++...- .. +..++++++|+|++|.+..    .++..+..+++|++|+|++|.+..    .+...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5778888888775321 12 4567788888888885432    334556778888888888887431    2233332 2


Q ss_pred             CCCCcEEEeeCCCCCCc----chHHHhccCCCcEEccccccc
Q 017788           85 LISLQRLYLSGCSNLRR----IPESIINLSKLELLHLKNCSK  122 (366)
Q Consensus        85 l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~L~~n~~  122 (366)
                      ..+|++|+|++|.+...    ++..+..+++|++|++++|.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            34688888888875432    455667778888888888754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=8.5e-07  Score=82.62  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=75.6

Q ss_pred             CCCcEEecccCCCccc-cCccccCCcCCcEEecccccccC----ccchhcCCCCCCcEEEeeCCCCCCcchHHHh-----
Q 017788           38 RNLENLLLKACSSLVE-THSSIQYLSKLVTLDMRLCKNLN----RLPSSLCELISLQRLYLSGCSNLRRIPESII-----  107 (366)
Q Consensus        38 ~~L~~L~L~~n~~~~~-~p~~i~~L~~L~~L~L~~n~~~~----~lp~~i~~l~~L~~L~Ls~n~~~~~lp~~i~-----  107 (366)
                      .+|+.|+++++.+... +..-+..+++|++|+|++|.+..    .++..+..+++|++|+|++|.+...--..+.     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4689999998866542 23345668999999999998542    4556677899999999999865321111222     


Q ss_pred             ccCCCcEEcccccccccc----cCCCCCCccEEecCCCcCCccccCcccccc
Q 017788          108 NLSKLELLHLKNCSKLLS----LPELPCNLFSVGVRRCTSLEALSSFSFLFS  155 (366)
Q Consensus       108 ~L~~L~~L~L~~n~~l~~----lp~l~~~L~~L~l~~~~~L~~L~l~~n~l~  155 (366)
                      ...+|++|++++|.+...    ++.        .+..+++|+.|+++.|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~--------~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSS--------TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHH--------HTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccc--------hhhccccccccccccccch
Confidence            124799999999965332    233        3556777888888777653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=3.3e-06  Score=68.07  Aligned_cols=81  Identities=20%  Similarity=0.116  Sum_probs=60.9

Q ss_pred             CCCCCCcEEecccCCCccc--cCccccCCcCCcEEecccccccCccch-hcCCCCCCcEEEeeCCCCCCcch-------H
Q 017788           35 SQARNLENLLLKACSSLVE--THSSIQYLSKLVTLDMRLCKNLNRLPS-SLCELISLQRLYLSGCSNLRRIP-------E  104 (366)
Q Consensus        35 ~~l~~L~~L~L~~n~~~~~--~p~~i~~L~~L~~L~L~~n~~~~~lp~-~i~~l~~L~~L~Ls~n~~~~~lp-------~  104 (366)
                      ..+++|++|+|++|.+...  ++..++.+++|+.|+|++|. +..+++ ......+|+.|++++|.+.....       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            4688999999999966432  34557789999999999998 455544 33355679999999998876543       2


Q ss_pred             HHhccCCCcEEc
Q 017788          105 SIINLSKLELLH  116 (366)
Q Consensus       105 ~i~~L~~L~~L~  116 (366)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            356789999987

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=6.7e-05  Score=60.37  Aligned_cols=86  Identities=15%  Similarity=0.095  Sum_probs=47.2

Q ss_pred             CCCCCCCEEeccCCC-CCCC----CC-CCCCCCCCcEEecccCCCccc----cCccccCCcCCcEEecccccccCc----
Q 017788           12 KNLVNLKEIDLSYSR-QLKK----LP-DLSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLNR----   77 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~-~~~~----~p-~l~~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~~~----   77 (366)
                      .+.++|++|+|++++ +...    +- .+...++|+.|+|++|.+...    +...+...+.|+.|+|++|.+...    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            345778888887643 3211    11 245566777777777654321    223344456677777777664321    


Q ss_pred             cchhcCCCCCCcEEEeeCCC
Q 017788           78 LPSSLCELISLQRLYLSGCS   97 (366)
Q Consensus        78 lp~~i~~l~~L~~L~Ls~n~   97 (366)
                      +-..+...++|++|++++|.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhCCcCCEEECCCCc
Confidence            22344455667777776653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.05  E-value=0.00012  Score=58.87  Aligned_cols=86  Identities=8%  Similarity=0.006  Sum_probs=54.1

Q ss_pred             CCCCCcEEecccCCCccc-----cCccccCCcCCcEEecccccccC----ccchhcCCCCCCcEEEeeCCCCCCc----c
Q 017788           36 QARNLENLLLKACSSLVE-----THSSIQYLSKLVTLDMRLCKNLN----RLPSSLCELISLQRLYLSGCSNLRR----I  102 (366)
Q Consensus        36 ~l~~L~~L~L~~n~~~~~-----~p~~i~~L~~L~~L~L~~n~~~~----~lp~~i~~l~~L~~L~Ls~n~~~~~----l  102 (366)
                      +.++|+.|+|+++..++.     +-..+...++|+.|+|++|.+..    .+...+...+.|++|+|++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            457788888887543321     23345666778888888887532    2334445567888888888865432    2


Q ss_pred             hHHHhccCCCcEEcccccc
Q 017788          103 PESIINLSKLELLHLKNCS  121 (366)
Q Consensus       103 p~~i~~L~~L~~L~L~~n~  121 (366)
                      -..+..-++|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            2334455678888887763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.24  E-value=0.0018  Score=51.30  Aligned_cols=82  Identities=16%  Similarity=0.078  Sum_probs=37.2

Q ss_pred             CCCCCCCEEeccCCC-CCCC----CC-CCCCCCCCcEEecccCCCccc----cCccccCCcCCcEEecccccccC----c
Q 017788           12 KNLVNLKEIDLSYSR-QLKK----LP-DLSQARNLENLLLKACSSLVE----THSSIQYLSKLVTLDMRLCKNLN----R   77 (366)
Q Consensus        12 ~~l~~L~~L~Ls~n~-~~~~----~p-~l~~l~~L~~L~L~~n~~~~~----~p~~i~~L~~L~~L~L~~n~~~~----~   77 (366)
                      .+.+.|++|+|+++. +...    +- .+...++|+.|++++|.+...    +...+...+.++.+++++|.+..    .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            345666666666532 2111    00 134555666666666543221    12233344555555555554321    1


Q ss_pred             cchhcCCCCCCcEEEe
Q 017788           78 LPSSLCELISLQRLYL   93 (366)
Q Consensus        78 lp~~i~~l~~L~~L~L   93 (366)
                      +-..+...++|+.++|
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            2233344455555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.03  E-value=0.00095  Score=53.09  Aligned_cols=84  Identities=12%  Similarity=0.086  Sum_probs=51.8

Q ss_pred             CCCCCCcEEecccCCCccc-----cCccccCCcCCcEEecccccccCc----cchhcCCCCCCcEEEeeCCCCCCc----
Q 017788           35 SQARNLENLLLKACSSLVE-----THSSIQYLSKLVTLDMRLCKNLNR----LPSSLCELISLQRLYLSGCSNLRR----  101 (366)
Q Consensus        35 ~~l~~L~~L~L~~n~~~~~-----~p~~i~~L~~L~~L~L~~n~~~~~----lp~~i~~l~~L~~L~Ls~n~~~~~----  101 (366)
                      .+.+.|+.|+|+++..++.     +-..+...++|++|+|++|.+...    +-..+...++++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3557888888887433321     234456678888888888874332    333445567888888888765432    


Q ss_pred             chHHHhccCCCcEEccc
Q 017788          102 IPESIINLSKLELLHLK  118 (366)
Q Consensus       102 lp~~i~~L~~L~~L~L~  118 (366)
                      +-..+...++|+.++|+
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence            22445566777765554