Citrus Sinensis ID: 017806
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 365 | 2.2.26 [Sep-21-2011] | |||||||
| P56558 | 1036 | UDP-N-acetylglucosamine-- | yes | no | 0.350 | 0.123 | 0.288 | 0.0007 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.350 | 0.122 | 0.288 | 0.0007 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.350 | 0.122 | 0.288 | 0.0007 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.350 | 0.122 | 0.288 | 0.0007 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.350 | 0.122 | 0.288 | 0.0007 |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E PE A N A VLQ+ L+EA Y EA R+
Sbjct: 336 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 381
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT DA+ N M KE +++ + A + Y +A+Q+N A +N ++
Sbjct: 382 PTFADAYSN----------MGNTLKEMQDV-QGALQCYTRAIQINPAFADAHSNLA-SIH 429
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ S +P AI+ +R A++L+ DF A NL L
Sbjct: 430 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 463
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 5EC: 5 |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E PE A N A VLQ+ L+EA Y EA R+
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT DA+ N M KE +++ + A + Y +A+Q+N A +N ++
Sbjct: 392 PTFADAYSN----------MGNTLKEMQDV-QGALQCYTRAIQINPAFADAHSNLA-SIH 439
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ S +P AI+ +R A++L+ DF A NL L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E PE A N A VLQ+ L+EA Y EA R+
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT DA+ N M KE +++ + A + Y +A+Q+N A +N ++
Sbjct: 392 PTFADAYSN----------MGNTLKEMQDV-QGALQCYTRAIQINPAFADAHSNLA-SIH 439
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ S +P AI+ +R A++L+ DF A NL L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473
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Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E PE A N A VLQ+ L+EA Y EA R+
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT DA+ N M KE +++ + A + Y +A+Q+N A +N ++
Sbjct: 392 PTFADAYSN----------MGNTLKEMQDV-QGALQCYTRAIQINPAFADAHSNLA-SIH 439
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ S +P AI+ +R A++L+ DF A NL L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E PE A N A VLQ+ L+EA Y EA R+
Sbjct: 346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 391
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT DA+ N M KE +++ + A + Y +A+Q+N A +N ++
Sbjct: 392 PTFADAYSN----------MGNTLKEMQDV-QGALQCYTRAIQINPAFADAHSNLA-SIH 439
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ S +P AI+ +R A++L+ DF A NL L
Sbjct: 440 KDSGNIP---------EAIASYRTALKLKPDFPDAYCNLAHCL 473
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 365 | ||||||
| 255555737 | 505 | conserved hypothetical protein [Ricinus | 0.882 | 0.637 | 0.821 | 1e-155 | |
| 449456793 | 550 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.64 | 0.739 | 1e-147 | |
| 356535272 | 534 | PREDICTED: uncharacterized protein LOC10 | 0.939 | 0.642 | 0.763 | 1e-146 | |
| 356535274 | 540 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.637 | 0.755 | 1e-145 | |
| 225426605 | 500 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.714 | 0.721 | 1e-144 | |
| 356576620 | 528 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.666 | 0.710 | 1e-142 | |
| 365222856 | 569 | Hop-interacting protein THI002 [Solanum | 0.805 | 0.516 | 0.799 | 1e-137 | |
| 449528708 | 430 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.709 | 0.602 | 0.907 | 1e-134 | |
| 297805444 | 550 | binding protein [Arabidopsis lyrata subs | 0.989 | 0.656 | 0.626 | 1e-133 | |
| 297742432 | 425 | unnamed protein product [Vitis vinifera] | 0.772 | 0.663 | 0.821 | 1e-132 |
| >gi|255555737|ref|XP_002518904.1| conserved hypothetical protein [Ricinus communis] gi|223541891|gb|EEF43437.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/341 (82%), Positives = 294/341 (86%), Gaps = 19/341 (5%)
Query: 25 AADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMR 84
ADPK EE KE IQ + E P S +Q P LRKDEG+RTFTMR
Sbjct: 51 GADPKAEERKEAPIQLKEAYE---------------PQSDDQNARPELRKDEGSRTFTMR 95
Query: 85 ELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAA 144
ELL+ELKSE D VT SQ +TPH QNNAAMELINSVTG DEEGRSRQRILTFAA
Sbjct: 96 ELLSELKSEEADDVTTPQ-SQQSTPHL---QNNAAMELINSVTGADEEGRSRQRILTFAA 151
Query: 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT 204
+RYA+AIERNPEDYDALYNWALVLQESADNVS DSTSPSKDALLEEACKKYDEATRLCPT
Sbjct: 152 RRYASAIERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPT 211
Query: 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264
LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL
Sbjct: 212 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 271
Query: 265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV 324
SAIVPAREKQTIV+TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG +NP++V
Sbjct: 272 SAIVPAREKQTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGAINPKDV 331
Query: 325 SPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMVSIYY 365
SPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSM+ + Y
Sbjct: 332 SPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPY 372
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456793|ref|XP_004146133.1| PREDICTED: uncharacterized protein LOC101213929 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/372 (73%), Positives = 297/372 (79%), Gaps = 20/372 (5%)
Query: 6 EEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTE 65
E NGV ++ P + T + P E E PS TE
Sbjct: 53 ESESVSNGVPDSEPESPRKQLSESIHLHVVTGVTDPSVEEHKETSTPSNGNTEN------ 106
Query: 66 QTLNPALRKDEGNRTFTMRELLTELKSE-GEDSV--TDASFSQGNT--------PHQ-LA 113
L PALRKDEG+RTFTMRELL LK E G DS+ ++ +GN+ PHQ +
Sbjct: 107 --LQPALRKDEGSRTFTMRELLNGLKGEDGSDSLNESEGERPEGNSGYSLNQDSPHQPYS 164
Query: 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173
EQ+ AAMELINSVTGVDEEGRSRQRILTFAA+RYA+AIERN +DYDALYNWALVLQESAD
Sbjct: 165 EQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWALVLQESAD 224
Query: 174 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233
NVS DSTSPSKDALLEEACKKYDEAT LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW
Sbjct: 225 NVSPDSTSPSKDALLEEACKKYDEATHLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 284
Query: 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293
KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV+TAISKFRAAIQLQFD
Sbjct: 285 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVKTAISKFRAAIQLQFD 344
Query: 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 353
FHRAIYNLGTVLYGLAEDTLRTGG+ N ++VSPNELYSQSAIYIAAAHALKP+YSVYSSA
Sbjct: 345 FHRAIYNLGTVLYGLAEDTLRTGGSGNVKDVSPNELYSQSAIYIAAAHALKPNYSVYSSA 404
Query: 354 LRLVRSMVSIYY 365
LRLVRSM+ + Y
Sbjct: 405 LRLVRSMLPLPY 416
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535272|ref|XP_003536172.1| PREDICTED: uncharacterized protein LOC100809275 isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 268/351 (76%), Positives = 293/351 (83%), Gaps = 8/351 (2%)
Query: 19 EPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPA----LRK 74
EP P+P ++P E + ++P +E + ++ E S E NP+ LRK
Sbjct: 49 EPNPQPESEPVPTEQTQAPLEPKSGSEADPVVN-DADRRETTIHSNEANANPSPTPKLRK 107
Query: 75 DEGNRTFTMRELLTELKSEGEDSVTDAS--FSQGNTPHQLAEQNNAAMELINSVTGVDEE 132
DEG+RTFTMRELL LK+ E DA+ +S HQ A+QNNAAM+LINSV GVD+E
Sbjct: 108 DEGSRTFTMRELLNGLKTGSEPEKEDANSPYSPEQQQHQ-ADQNNAAMDLINSVVGVDDE 166
Query: 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 192
GRSRQRILTFAA+RYA AIERNPEDYDALYNWALVLQESADNV DSTSPSKDALLEEAC
Sbjct: 167 GRSRQRILTFAARRYATAIERNPEDYDALYNWALVLQESADNVIPDSTSPSKDALLEEAC 226
Query: 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252
KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT NYEKAVQLNWNSPQ
Sbjct: 227 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATSNYEKAVQLNWNSPQ 286
Query: 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312
ALNNWGLALQELS IVPAREKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT
Sbjct: 287 ALNNWGLALQELSTIVPAREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 346
Query: 313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMVSI 363
LRTGG+V+ +EVSPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSM+ +
Sbjct: 347 LRTGGSVSAQEVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPL 397
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535274|ref|XP_003536173.1| PREDICTED: uncharacterized protein LOC100809275 isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/356 (75%), Positives = 296/356 (83%), Gaps = 12/356 (3%)
Query: 19 EPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQTLNPA----LRK 74
EP P+P ++P E + ++P +E + ++ E S E NP+ LRK
Sbjct: 49 EPNPQPESEPVPTEQTQAPLEPKSGSEADPVVN-DADRRETTIHSNEANANPSPTPKLRK 107
Query: 75 DEGNRTFTMRELLTELKS----EGEDSVTDASFSQGNTPHQL---AEQNNAAMELINSVT 127
DEG+RTFTMRELL LK+ E ED+ + S S+ +P Q A+QNNAAM+LINSV
Sbjct: 108 DEGSRTFTMRELLNGLKTGSEPEKEDANSPYSVSKIFSPEQQQHQADQNNAAMDLINSVV 167
Query: 128 GVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187
GVD+EGRSRQRILTFAA+RYA AIERNPEDYDALYNWALVLQESADNV DSTSPSKDAL
Sbjct: 168 GVDDEGRSRQRILTFAARRYATAIERNPEDYDALYNWALVLQESADNVIPDSTSPSKDAL 227
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT NYEKAVQLN
Sbjct: 228 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATSNYEKAVQLN 287
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
WNSPQALNNWGLALQELS IVPAREKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG
Sbjct: 288 WNSPQALNNWGLALQELSTIVPAREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 347
Query: 308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMVSI 363
LAEDTLRTGG+V+ +EVSPNELYSQSAIYIAAAHALKP+YSVYSSALRLVRSM+ +
Sbjct: 348 LAEDTLRTGGSVSAQEVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPL 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426605|ref|XP_002272828.1| PREDICTED: uncharacterized protein LOC100232876 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 270/374 (72%), Positives = 296/374 (79%), Gaps = 17/374 (4%)
Query: 1 MSAAVEEPQFQNGVASTDEPKPEPAADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQ 60
M++ +E + QNG E PE +PKV E + EQT Q + T
Sbjct: 1 MASPSDESELQNG---GGEAAPESVPEPKVGVNTEAEAKVDGDPEQTVIQSNDADNT--- 54
Query: 61 PPSTEQTLNPALRKDEGNRTFTMRELLTELKS--------EGEDSVTDASFSQGNTPHQL 112
PS EQ+ P L+KDEG++TFTMRELL+ELK EGE +S +T Q
Sbjct: 55 -PSAEQSAKPELQKDEGSQTFTMRELLSELKDGEGNSAAREGETHDASHHYSSESTQQQH 113
Query: 113 -AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171
+ N+ AM+LINSVTGVDEEGRSRQRIL FAA+RYA+AIERN EDYDALYNWALVLQES
Sbjct: 114 HIDHNDPAMDLINSVTGVDEEGRSRQRILAFAARRYASAIERNSEDYDALYNWALVLQES 173
Query: 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231
ADNV DS+SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE
Sbjct: 174 ADNVGPDSSSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 233
Query: 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291
LWKQAT+NYEKAVQLNWNSPQALNNWGLALQELSAIVP REKQTIVRTAISKFRAAIQLQ
Sbjct: 234 LWKQATRNYEKAVQLNWNSPQALNNWGLALQELSAIVPVREKQTIVRTAISKFRAAIQLQ 293
Query: 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351
FDFHRAIYNLGTVLYGLAEDTLR G V+ +EVSPNELYSQSAIYIAAAHALKP+YSVY
Sbjct: 294 FDFHRAIYNLGTVLYGLAEDTLRAGAIVD-KEVSPNELYSQSAIYIAAAHALKPNYSVYR 352
Query: 352 SALRLVRSMVSIYY 365
SALRLVRSM+ + Y
Sbjct: 353 SALRLVRSMLPLPY 366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576620|ref|XP_003556428.1| PREDICTED: uncharacterized protein LOC100786164 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 280/394 (71%), Positives = 302/394 (76%), Gaps = 42/394 (10%)
Query: 7 EPQFQNGVASTDEPKPE----------PAADPKVEETKETLIQPPPS-----TEQTEKQH 51
EP+ QNG EP+PE P +PK + T E P P TEQT+ Q
Sbjct: 3 EPESQNGHEQDPEPQPETEPVPTEQTQPQLEPKSKSTPEPEPNPQPESEPVPTEQTQAQL 62
Query: 52 PSTEQTEKQPPSTEQTL----------------NPALRKDEGNRTFTMRELLTELKSEGE 95
+E P + L P LRKDEG+RTFTMRELL LK++ E
Sbjct: 63 EPKSGSEADPAVNDADLRETTIHSNETYANPSPTPQLRKDEGSRTFTMRELLNGLKNDSE 122
Query: 96 DSVTDASFSQGNTPHQ------LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYAN 149
D GN+P+ A+QNNAAM+LINSV GVDEEGRSRQRILTFAA+RYA
Sbjct: 123 PERED-----GNSPYSPEQQQQQADQNNAAMDLINSVVGVDEEGRSRQRILTFAARRYAT 177
Query: 150 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209
AIERNPEDYDALYNWALVLQESADNVS DSTSPSKDALLEEACKKYDEATRLCPTLHDAF
Sbjct: 178 AIERNPEDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 237
Query: 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP 269
YNWAIAISDRAKMRGRTKEAEELWK AT+NYEKAVQLNWNSPQALNNWGLALQELS IVP
Sbjct: 238 YNWAIAISDRAKMRGRTKEAEELWKLATRNYEKAVQLNWNSPQALNNWGLALQELSGIVP 297
Query: 270 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNEL 329
AREKQ IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG+V+ +EVSPNEL
Sbjct: 298 AREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSVSAQEVSPNEL 357
Query: 330 YSQSAIYIAAAHALKPSYSVYSSALRLVRSMVSI 363
YSQSAIYIAAAHALKP+YSVYSSALRLVRSM+ +
Sbjct: 358 YSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPL 391
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|365222856|gb|AEW69780.1| Hop-interacting protein THI002 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/299 (79%), Positives = 268/299 (89%), Gaps = 5/299 (1%)
Query: 72 LRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPH-----QLAEQNNAAMELINSV 126
L+KDEG+RTFTMRELL ELK+ + ++A + +TPH Q ++NAA++LINSV
Sbjct: 138 LKKDEGSRTFTMRELLDELKNGDANEDSEAERRESDTPHSQQSSQQHTESNAALDLINSV 197
Query: 127 TGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA 186
TG DEEGRSRQRILT+AA+RYA A+ERN EDYDALYNWALVLQESADNVS DSTSPSKD+
Sbjct: 198 TGADEEGRSRQRILTYAARRYATALERNQEDYDALYNWALVLQESADNVSPDSTSPSKDS 257
Query: 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246
LLE+ACKKY+EATRLCPTL+DA+YNWAIAISDRAK+RGRTKEAEELWKQATKNYEKAVQL
Sbjct: 258 LLEQACKKYEEATRLCPTLNDAYYNWAIAISDRAKIRGRTKEAEELWKQATKNYEKAVQL 317
Query: 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306
NWNSPQALNNWGLALQELSAIVPAREK TIV+TAISKFRAAIQLQFDFHRAIYNLGTVLY
Sbjct: 318 NWNSPQALNNWGLALQELSAIVPAREKLTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLY 377
Query: 307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMVSIYY 365
GLAED RTGG V + +SPNELYSQSAIYIAAAHALKP+YSVY+SAL+LVRSM+ + Y
Sbjct: 378 GLAEDMSRTGGAVTAKGISPNELYSQSAIYIAAAHALKPNYSVYTSALKLVRSMLPLPY 436
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528708|ref|XP_004171345.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101213929 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/260 (90%), Positives = 250/260 (96%), Gaps = 1/260 (0%)
Query: 107 NTPHQ-LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165
++PHQ +EQ+ AAMELINSVTGVDEEGRSRQRILTFAA+RYA+AIERN +DYDALYNWA
Sbjct: 37 DSPHQPYSEQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWA 96
Query: 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225
LVLQESADNVS DSTSPSKDALLEEACKKYDEAT LCPTLHDAFYNWAIAISDRAKMRGR
Sbjct: 97 LVLQESADNVSPDSTSPSKDALLEEACKKYDEATHLCPTLHDAFYNWAIAISDRAKMRGR 156
Query: 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285
TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV+TAISKFR
Sbjct: 157 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVKTAISKFR 216
Query: 286 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345
AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG+ N ++VSPNELYSQSAIYIAAAHALKP
Sbjct: 217 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSGNVKDVSPNELYSQSAIYIAAAHALKP 276
Query: 346 SYSVYSSALRLVRSMVSIYY 365
+YSVYSSALRLVRSM+ + Y
Sbjct: 277 NYSVYSSALRLVRSMLPLPY 296
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805444|ref|XP_002870606.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297316442|gb|EFH46865.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 260/415 (62%), Positives = 300/415 (72%), Gaps = 54/415 (13%)
Query: 1 MSAAVEEPQFQNGVASTD---------------EPK-----PEPAADPKVEETKETLIQP 40
M+ VEEPQ QNG A + EPK PE D K EE + +
Sbjct: 1 MADNVEEPQLQNGAAPAESEIEQNPTPEPQLQTEPKLTEEIPEIETDVKPEEVQSEVTDA 60
Query: 41 PPSTEQTEKQHPSTEQ--TEKQPPSTEQTLNPA--------------------------L 72
P Q+E + + T+ +P T+ L+P L
Sbjct: 61 KPEEVQSEVKPEEVQSVVTDAKPELTDVDLSPGGSEEIPIQSREVNQESSSIDQESTSVL 120
Query: 73 RK-DEGNRTFTMRELLTELKSEGEDSVTDAS---FSQGNTPHQLAEQNNAAMELINSVTG 128
+K D+GN+TFTMRELL+ELKSE D +S FS+ + Q AE NN AM+LIN +
Sbjct: 121 KKEDDGNKTFTMRELLSELKSEEGDGTPHSSASPFSR-ESASQPAE-NNPAMDLINRIQV 178
Query: 129 VDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALL 188
DEEGRSRQR+L FAA++YA+AIERNP+D+DALYNWAL+LQESADNVS DS SPSKD LL
Sbjct: 179 TDEEGRSRQRVLAFAARKYASAIERNPDDHDALYNWALILQESADNVSADSVSPSKDDLL 238
Query: 189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248
EEACKKYDEATRLCPTL+DA+YNWAIAISDRAKMRGRTKEAEELW+QAT NYEKAVQLNW
Sbjct: 239 EEACKKYDEATRLCPTLYDAYYNWAIAISDRAKMRGRTKEAEELWEQATNNYEKAVQLNW 298
Query: 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
NS QALNNWGLALQELS IVPAREK+ +VRTAISKFRAAI+LQFDFHRAIYNLGTVLYGL
Sbjct: 299 NSSQALNNWGLALQELSQIVPAREKEKVVRTAISKFRAAIRLQFDFHRAIYNLGTVLYGL 358
Query: 309 AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMVSI 363
AEDTLRTGG+ N +++ P ELYSQSAIYIAAAH+LKPSYSVYSSALRLVRSM+ +
Sbjct: 359 AEDTLRTGGSGNGKDMPPGELYSQSAIYIAAAHSLKPSYSVYSSALRLVRSMLPL 413
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742432|emb|CBI34581.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/292 (82%), Positives = 255/292 (87%), Gaps = 10/292 (3%)
Query: 83 MRELLTELKS--------EGEDSVTDASFSQGNTPHQL-AEQNNAAMELINSVTGVDEEG 133
MRELL+ELK EGE +S +T Q + N+ AM+LINSVTGVDEEG
Sbjct: 1 MRELLSELKDGEGNSAAREGETHDASHHYSSESTQQQHHIDHNDPAMDLINSVTGVDEEG 60
Query: 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193
RSRQRIL FAA+RYA+AIERN EDYDALYNWALVLQESADNV DS+SPSKDALLEEACK
Sbjct: 61 RSRQRILAFAARRYASAIERNSEDYDALYNWALVLQESADNVGPDSSSPSKDALLEEACK 120
Query: 194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253
KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT+NYEKAVQLNWNSPQA
Sbjct: 121 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATRNYEKAVQLNWNSPQA 180
Query: 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313
LNNWGLALQELSAIVP REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL
Sbjct: 181 LNNWGLALQELSAIVPVREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 240
Query: 314 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMVSIYY 365
R G V+ +EVSPNELYSQSAIYIAAAHALKP+YSVY SALRLVRSM+ + Y
Sbjct: 241 RAGAIVD-KEVSPNELYSQSAIYIAAAHALKPNYSVYRSALRLVRSMLPLPY 291
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 365 | ||||||
| TAIR|locus:2165725 | 565 | AT5G41950 [Arabidopsis thalian | 0.942 | 0.608 | 0.685 | 6.7e-120 | |
| UNIPROTKB|Q8EKN7 | 571 | SO_0055 "Tetratricopeptide rep | 0.602 | 0.385 | 0.264 | 5.4e-12 | |
| TIGR_CMR|SO_0055 | 571 | SO_0055 "conserved domain prot | 0.602 | 0.385 | 0.264 | 5.4e-12 | |
| DICTYBASE|DDB_G0278895 | 1313 | cldA "Clu domain-containing pr | 0.534 | 0.148 | 0.252 | 1e-05 | |
| UNIPROTKB|Q7RQS4 | 467 | PY01018 "Uncharacterized prote | 0.260 | 0.203 | 0.343 | 0.00072 |
| TAIR|locus:2165725 AT5G41950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 240/350 (68%), Positives = 279/350 (79%)
Query: 19 EPKPEPA-ADPKVEETKETLIQPPPSTEQTEKQHPSTEQTEKQPPSTEQ-TLNPALRKDE 76
+ KPE A ++ K EE + + P + +E+ + EQ + L+KD+
Sbjct: 80 DAKPEEAQSEVKPEEVQSVVTDTKPDLTDVDLSPGGSEEIPIRSTEVEQESTTSVLKKDD 139
Query: 77 -GNRTFTMRELLTELKSEGEDSVTDASFS--QGNTPHQLAEQNNAAMELINSVTGVDEEG 133
GN+TFTMRELL+ELKSE D +S S + Q AE NN AM+LIN + DEEG
Sbjct: 140 DGNKTFTMRELLSELKSEEGDGTPHSSASPFSRESASQPAE-NNPAMDLINRIQVNDEEG 198
Query: 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193
RSRQR+L FAA++YA+AIERNP+D+DALYNWAL+LQESADNVS DS SPSKD LLEEACK
Sbjct: 199 RSRQRVLAFAARKYASAIERNPDDHDALYNWALILQESADNVSPDSVSPSKDDLLEEACK 258
Query: 194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253
KYDEATRLCPTL+DA+YNWAIAISDRAK+RGRTKEAEELW+QA NYEKAVQLNWNS QA
Sbjct: 259 KYDEATRLCPTLYDAYYNWAIAISDRAKIRGRTKEAEELWEQAADNYEKAVQLNWNSSQA 318
Query: 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313
LNNWGL LQELS IVPAREK+ +VRTAISKFRAAI+LQFDFHRAIYNLGTVLYGLAEDTL
Sbjct: 319 LNNWGLVLQELSQIVPAREKEKVVRTAISKFRAAIRLQFDFHRAIYNLGTVLYGLAEDTL 378
Query: 314 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMVSI 363
RTGG+ N +++ P ELYSQSAIYIAAAH+LKPSYSVYSSALRLVRSM+ +
Sbjct: 379 RTGGSGNGKDMPPGELYSQSAIYIAAAHSLKPSYSVYSSALRLVRSMLPL 428
|
|
| UNIPROTKB|Q8EKN7 SO_0055 "Tetratricopeptide repeat-containing protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 65/246 (26%), Positives = 120/246 (48%)
Query: 72 LRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTG--- 128
LRK + R R L +G+ + A ++G +L E+ A + G
Sbjct: 302 LRKSQEEREQRARPNFELLLMKGKYNELIA-LAKGT---ELDEEEKAVVAWAEIALGDLL 357
Query: 129 VDEEGRSRQ-RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187
V++ +++Q ++ + ++Y A+ P+ ++AL NW L + A + AL
Sbjct: 358 VEQAKKAQQPKLFEQSFEKYQAALAIKPDMHEALNNWGNALSDLAQ-------LKQEPAL 410
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
E++ +KY A + P +HDA +NW +SD A++ K+ L++Q+ + YE A+ +
Sbjct: 411 FEQSLEKYQAALAIKPDMHDALFNWGNVLSDLAQL----KQEPALFEQSIEKYEAALAIK 466
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
+ +A++NWG AL +L+ + ++K + + SK IQ + ++ YNL LY
Sbjct: 467 PDDHEAISNWGGALLDLAKL---QQKTELFEESKSKL---IQARSVANQPNYNLAC-LYS 519
Query: 308 LAEDTL 313
L D L
Sbjct: 520 LLHDDL 525
|
|
| TIGR_CMR|SO_0055 SO_0055 "conserved domain protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 65/246 (26%), Positives = 120/246 (48%)
Query: 72 LRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTG--- 128
LRK + R R L +G+ + A ++G +L E+ A + G
Sbjct: 302 LRKSQEEREQRARPNFELLLMKGKYNELIA-LAKGT---ELDEEEKAVVAWAEIALGDLL 357
Query: 129 VDEEGRSRQ-RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187
V++ +++Q ++ + ++Y A+ P+ ++AL NW L + A + AL
Sbjct: 358 VEQAKKAQQPKLFEQSFEKYQAALAIKPDMHEALNNWGNALSDLAQ-------LKQEPAL 410
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
E++ +KY A + P +HDA +NW +SD A++ K+ L++Q+ + YE A+ +
Sbjct: 411 FEQSLEKYQAALAIKPDMHDALFNWGNVLSDLAQL----KQEPALFEQSIEKYEAALAIK 466
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
+ +A++NWG AL +L+ + ++K + + SK IQ + ++ YNL LY
Sbjct: 467 PDDHEAISNWGGALLDLAKL---QQKTELFEESKSKL---IQARSVANQPNYNLAC-LYS 519
Query: 308 LAEDTL 313
L D L
Sbjct: 520 LLHDDL 525
|
|
| DICTYBASE|DDB_G0278895 cldA "Clu domain-containing protein A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 54/214 (25%), Positives = 91/214 (42%)
Query: 55 EQTEKQP-PSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLA 113
+Q ++QP P +Q N + N T + D D S N +
Sbjct: 931 QQQQQQPQPQPQQPTNTSTTTSTSNNTSNN----INNNNNNPDGSNDGSDDNINNNNNNN 986
Query: 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173
NN N++T S + AA+++ AI+ P+DY+ L +W ++L A
Sbjct: 987 NNNNNNNNNNNNLTN------SADNLFIQAAEKFKVAIQSKPDDYEILTHWGILLSMRAR 1040
Query: 174 NVS----LDSTSPSK-DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE 228
+S + + ++ + L + A +K+ A +L H A +NWA A+ A +R T
Sbjct: 1041 LISNKTYIKAHGKAEIEKLYQSAIEKFQLAVKLKRNHHYALFNWAEALRGWAAIRPGTDI 1100
Query: 229 AEELWKQATKNYEKA--VQLNWNSPQALNNWGLA 260
A EL K+A ++A + W Q L G+A
Sbjct: 1101 AHELEKKAKMKLKEAGVFEKRWFF-QTLETQGVA 1133
|
|
| UNIPROTKB|Q7RQS4 PY01018 "Uncharacterized protein" [Plasmodium yoelii yoelii (taxid:73239)] | Back alignment and assigned GO terms |
|---|
Score = 116 (45.9 bits), Expect = 0.00072, P = 0.00072
Identities = 35/102 (34%), Positives = 48/102 (47%)
Query: 17 TDEPKPEPAADPKVEETKETLIQPP--PSTEQTEKQHPSTEQTEKQP--PSTEQTLNPAL 72
T EP EP +P+ E E +P P+TEQT +Q +TEQT +Q P TEQT PA
Sbjct: 130 TTEPATEPETEPETEPATEPETEPKTEPTTEQTTEQ--TTEQTTEQTTEPETEQTTEPAA 187
Query: 73 RKDEGNRTFTMRELLTELKSEGEDSVTDASFSQGNTPHQLAE 114
+ T + TE +E T ++ T Q+ E
Sbjct: 188 EQTTEQTTEPETDQTTEPATEQITEPTTEQITEPTT-EQITE 228
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.125 0.350 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 365 365 0.00084 117 3 11 23 0.48 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 608 (65 KB)
Total size of DFA: 230 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.70u 0.13s 45.83t Elapsed: 00:00:02
Total cpu time: 45.70u 0.13s 45.83t Elapsed: 00:00:02
Start: Tue May 21 02:50:26 2013 End: Tue May 21 02:50:28 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 365 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196
A + Y A+E +P++ DA YN A + EEA + Y+
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------------YEEALEDYE 58
Query: 197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238
+A L P A+YN +A G+ +EA E +++A +
Sbjct: 59 KALELDPDNAKAYYNLGLAY----YKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.003
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280
G + +A + YEKA++L+ ++ A N A +L A
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEA 53
Query: 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + A++L D +A YNLG Y L
Sbjct: 54 LEDYEKALELDPDNAKAYYNLGLAYYKL 81
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.8 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.79 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.77 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.76 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.75 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.75 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.75 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.73 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.71 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.71 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.7 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.67 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.61 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.6 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.6 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.6 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.56 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.56 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.52 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.49 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.49 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.45 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.45 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.42 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.38 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 99.38 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.37 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.31 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.31 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.3 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.3 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 99.29 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.27 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.24 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.21 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.2 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.19 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.17 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.12 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.08 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.04 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.04 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.0 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.98 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.97 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.95 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.93 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.9 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.85 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.83 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.82 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.8 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.79 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.78 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.76 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.73 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.69 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.68 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.67 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.66 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.66 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.64 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.58 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.57 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.56 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.55 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.55 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.53 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.52 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.52 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.47 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.46 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.43 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.4 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.39 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.32 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.3 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.28 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.22 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.21 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.21 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.18 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.16 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.07 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.06 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.03 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.02 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.0 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.99 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.98 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.97 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.95 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.94 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.92 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.91 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.88 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.86 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.86 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.85 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.81 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.8 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.69 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.68 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.63 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.63 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.57 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.54 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.52 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.49 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.47 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.42 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.37 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.36 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 97.33 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.32 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.3 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.21 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.16 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.12 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.07 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.02 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.97 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.87 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.85 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.83 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.8 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.77 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.73 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 96.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.65 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.64 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.57 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.54 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.53 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.53 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.47 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.41 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.36 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.33 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.32 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.32 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.31 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.29 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.27 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.18 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.16 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.15 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.15 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.07 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.03 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.99 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.92 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.91 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.86 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.85 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.58 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.41 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 95.39 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.2 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 95.18 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.17 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.11 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.91 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.87 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 94.79 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.68 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.58 | |
| cd02683 | 77 | MIT_1 MIT: domain contained within Microtubule Int | 94.51 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.51 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 94.39 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.34 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 94.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.03 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.95 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 93.88 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.74 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.48 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 93.41 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.36 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 93.27 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.24 | |
| cd02678 | 75 | MIT_VPS4 MIT: domain contained within Microtubule | 93.18 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 93.11 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.08 | |
| cd02681 | 76 | MIT_calpain7_1 MIT: domain contained within Microt | 93.0 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 92.54 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 92.5 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.2 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.04 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.61 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.32 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.25 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 91.15 | |
| smart00745 | 77 | MIT Microtubule Interacting and Trafficking molecu | 91.05 | |
| cd02684 | 75 | MIT_2 MIT: domain contained within Microtubule Int | 91.04 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 90.95 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 90.78 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 90.5 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 90.36 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 89.62 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.51 | |
| cd02656 | 75 | MIT MIT: domain contained within Microtubule Inter | 89.24 | |
| PF04212 | 69 | MIT: MIT (microtubule interacting and transport) d | 89.2 | |
| cd02677 | 75 | MIT_SNX15 MIT: domain contained within Microtubule | 89.15 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.75 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.15 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 88.13 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 88.03 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 87.86 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 87.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 87.26 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 87.22 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 86.5 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 86.29 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.04 | |
| cd02680 | 75 | MIT_calpain7_2 MIT: domain contained within Microt | 85.83 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 85.75 | |
| cd02679 | 79 | MIT_spastin MIT: domain contained within Microtubu | 85.03 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 84.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 84.34 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.09 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 83.96 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.78 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 83.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 83.46 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 83.34 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 83.2 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.13 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.58 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 81.8 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.8 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.71 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 81.48 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.23 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 80.72 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=229.46 Aligned_cols=200 Identities=23% Similarity=0.297 Sum_probs=181.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|...++|+++|++| ...+.++.|+..|.+++.+.|. .|+.+|+++-||.+|+++|++.|+.++++
T Consensus 245 vkldP~f~dAYiNLGnV~-ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay 323 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVY-KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY 323 (966)
T ss_pred hcCCCcchHHHhhHHHHH-HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence 678999999999999999 6999999999999999999987 36778999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
.+||+++...|+ ..+|..+|.+++.++|+++++.+|||.++.. +|.+++|. ..|.
T Consensus 324 ~NlanALkd~G~--------------V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~-------~ly~ 378 (966)
T KOG4626|consen 324 NNLANALKDKGS--------------VTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEAT-------RLYL 378 (966)
T ss_pred hHHHHHHHhccc--------------hHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 6688
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
++++..|..+.+++|||.+|..+|++ ++|+.+|++||+++|..+.++.|+|.+|..+|+...++..+..+
T Consensus 379 ~al~v~p~~aaa~nNLa~i~kqqgnl----------~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 379 KALEVFPEFAAAHNNLASIYKQQGNL----------DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHhhChhhhhhhhhHHHHHHhcccH----------HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 88888888888888888888888886 88888888888888888888888888888888888888877777
Q ss_pred CCCCcc
Q 017806 322 REVSPN 327 (365)
Q Consensus 322 ~~~~~~ 327 (365)
+..+|.
T Consensus 449 I~~nPt 454 (966)
T KOG4626|consen 449 IQINPT 454 (966)
T ss_pred HhcCcH
Confidence 777765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=224.64 Aligned_cols=238 Identities=22% Similarity=0.216 Sum_probs=202.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
++..|+..++|.++|.++ ...|+.+.|.+.|..+++++|.. .-.+|++.+|..+|.++++..|..+.+|
T Consensus 143 iel~p~fida~inla~al-~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 143 IELKPKFIDAYINLAAAL-VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HhcCchhhHHHhhHHHHH-HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 788999999999999999 49999999999999999999861 2335888899999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------ 235 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------ 235 (365)
.+||.++...|+ .-.||.+|++|+.++|+..++|+|||.+|.. .+.++.|+..|.+
T Consensus 222 snLg~~f~~~Ge--------------i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke----~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 222 SNLGCVFNAQGE--------------IWLAIQHYEEAVKLDPNFLDAYINLGNVYKE----ARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred hhcchHHhhcch--------------HHHHHHHHHHhhcCCCcchHHHhhHHHHHHH----HhcchHHHHHHHHHHhcCC
Confidence 999999999898 9999999999999999999999999999988 9999999988765
Q ss_pred ---------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 236 ---------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 236 ---------------------A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
||..|+++++++|+++++++|+|.++...|+. .+|..+|.++|.+.|++
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V----------~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV----------TEAVDCYNKALRLCPNH 353 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch----------HHHHHHHHHHHHhCCcc
Confidence 68999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--hHHHHHHHHHHHHHhcCccHHHHHHHHHhhh
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN--ELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~ 358 (365)
+.+.+|||.++...|..+.+...+..+..+.|+ ..+...+..+.+.+.++.+...|..++++-+
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 999999999999999988888877777777776 2334444444555555555555555555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=189.16 Aligned_cols=200 Identities=18% Similarity=0.204 Sum_probs=185.1
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
++.+|..|+.|..+|+++ ..+++++.|+..|++|++++|. -.....++++|..+|+.||..+|++..+|
T Consensus 414 i~~~~~sPesWca~GNcf-SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCF-SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred HhhCCCCcHHHHHhcchh-hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 578999999999999999 6999999999999999999996 23445899999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+.+|.+|.++++ ++.|.-+|++|++++|.+......+|.++.+ .|+.++|+ ..|+
T Consensus 493 YGlG~vy~Kqek--------------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL-------~~~~ 547 (638)
T KOG1126|consen 493 YGLGTVYLKQEK--------------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKAL-------QLYE 547 (638)
T ss_pred Hhhhhheeccch--------------hhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 7799
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
+|+.+||+++-..+..|.++..++++ ++|+..+++.-++-|+...+++.+|.+|..+|+...+...+.-+
T Consensus 548 ~A~~ld~kn~l~~~~~~~il~~~~~~----------~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRASILFSLGRY----------VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHhcCCCCchhHHHHHHHHHhhcch----------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 99999999999999999999999996 99999999999999999999999999999999887666655445
Q ss_pred CCCCcc
Q 017806 322 REVSPN 327 (365)
Q Consensus 322 ~~~~~~ 327 (365)
.+++|.
T Consensus 618 ~~ldpk 623 (638)
T KOG1126|consen 618 LDLDPK 623 (638)
T ss_pred hcCCCc
Confidence 554444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=191.39 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=172.9
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
.|....+++.+|.++. ..|++++|+..|++++.++|. .+...|++++|+.+|+++++++|+++.+++.+
T Consensus 327 ~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 327 GEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred ChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5778889999999995 999999999999999999986 23456899999999999999999999999999
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
|.++...|+ +++|+.+|++++.++|++..++.++|.++.. +|++++|+ ..|++++
T Consensus 406 g~~~~~~g~--------------~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~-------~~~~~al 460 (615)
T TIGR00990 406 AQLHFIKGE--------------FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSM-------ATFRRCK 460 (615)
T ss_pred HHHHHHcCC--------------HHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHH
Confidence 999999999 9999999999999999999999999999999 99999999 7788899
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHH-------------------------------hhhHHHHHHHHHHHHHHhCCC
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPARE-------------------------------KQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~-------------------------------~~~~~~~A~~~~~~al~~~p~ 293 (365)
+.+|+++.+++++|.++..+|+++.|.. ..|++++|+.+|++++.++|+
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999865543 136677777777777777777
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
+..++..+|.++..+|+..++...+..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777665555544333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=183.55 Aligned_cols=196 Identities=18% Similarity=0.161 Sum_probs=178.6
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------------------------------
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------------------------------------------- 132 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------------- 132 (365)
++..-++..+|..|+ .+++|++|...|+.+-...|-
T Consensus 350 ~nt~wvl~q~GrayF-El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~G 428 (638)
T KOG1126|consen 350 YNTGWVLSQLGRAYF-ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALG 428 (638)
T ss_pred CCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhc
Confidence 444567888999996 999999999999999888743
Q ss_pred -hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 133 -GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (365)
Q Consensus 133 -~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 211 (365)
|+.-+++++.|+++|++|+.+||++.-++..+|.-+....+ |+.|..+|++|+.++|.+..+|+.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee--------------~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE--------------FDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH--------------HHhHHHHHHhhhcCCchhhHHHHh
Confidence 56678999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
||.+|.+ +++++.|. .+|++|++++|.+......+|.++.++|+. ++|+..|++|+.++
T Consensus 495 lG~vy~K----qek~e~Ae-------~~fqkA~~INP~nsvi~~~~g~~~~~~k~~----------d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 495 LGTVYLK----QEKLEFAE-------FHFQKAVEINPSNSVILCHIGRIQHQLKRK----------DKALQLYEKAIHLD 553 (638)
T ss_pred hhhheec----cchhhHHH-------HHHHhhhcCCccchhHHhhhhHHHHHhhhh----------hHHHHHHHHHHhcC
Confidence 9999999 99999999 899999999999999999999999999997 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 292 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
|.++-..+..|.+++.++++.++.........+.|.
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 999999999999999999988777655444444444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=184.85 Aligned_cols=201 Identities=16% Similarity=0.153 Sum_probs=177.9
Q ss_pred hcHHHHHHHHHHhhccC---hh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC
Q 017806 114 EQNNAAMELINSVTGVD---EE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~---~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
+++++|+..|++++... +. .+...|++++|+.+|+++++++|++..+|..+|.++..+|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~------- 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD------- 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-------
Confidence 57999999999999764 32 34456999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
+++|+.+|+++++++|+++.+|+.+|.++.. .|++++|+ .+|+++++++|++..++.++|.+
T Consensus 381 -------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 381 -------PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAG-------KDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 78999999999999999999999
Q ss_pred HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc-------------
Q 017806 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN------------- 327 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~------------- 327 (365)
+..+|++ ++|+..|++++...|+++.++.++|.++...|+..++...+..++...|.
T Consensus 443 ~~~~g~~----------~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 443 QYKEGSI----------ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHCCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 9999996 99999999999999999999999999999999998887766655554432
Q ss_pred ---------hHHHHHHHHHHHHHhcCccHHH
Q 017806 328 ---------ELYSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 328 ---------~~~~~a~~~~~~a~~~~~~~~~ 349 (365)
..|..+..++.++..++|....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 2345566677777777776654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-21 Score=189.59 Aligned_cols=252 Identities=14% Similarity=0.049 Sum_probs=178.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+...|.++++++.+|.+.+ ..|++++|+..|++++..+|. .+...|++++|+..|+++++++|++..++
T Consensus 69 l~~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~ 147 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIF 147 (656)
T ss_pred HHhCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4556666666666666663 666677777777666666655 23344666666666666666666666666
Q ss_pred HHHHHHHHHhcCcccc---------------------------------C---------------------CCCchhhhH
Q 017806 162 YNWALVLQESADNVSL---------------------------------D---------------------STSPSKDAL 187 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a---------------------------------~---------------------~~~~~~~~~ 187 (365)
..+|.++...|++..| . +......|+
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~ 227 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK 227 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC
Confidence 6666666666654433 0 001123477
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+++|+..|++++.++|+++.+++++|.++.. .|++++|. .+|+..|+++++++|+++.++.++|.++...|++
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~----~G~~~eA~---~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQ----SGRSREAK---LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCchhhH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 8888888888888888888888888888888 88888642 2344889999999999999999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch--HHHHHHHHHHHHHhcCc
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE--LYSQSAIYIAAAHALKP 345 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~ 345 (365)
++|+..|++++.++|+++.++.++|.++...|+...+...+..+....|.. .+......+...+..+.
T Consensus 301 ----------~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 301 ----------EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred ----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999998887776666555553 12222333344555555
Q ss_pred cHHHHHHHHHhhhhhh
Q 017806 346 SYSVYSSALRLVRSMV 361 (365)
Q Consensus 346 ~~~~~~~al~~~~~~~ 361 (365)
+...+..++.+.++..
T Consensus 371 A~~~l~~al~~~P~~~ 386 (656)
T PRK15174 371 AESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHhChhhc
Confidence 5555666655554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=162.04 Aligned_cols=193 Identities=17% Similarity=0.074 Sum_probs=173.1
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------------------------------------------
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------------------------------------------ 132 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------------ 132 (365)
-|.+.-.-...|.+.. ...++++|+..|+..+..+|-
T Consensus 258 f~~~~~i~~~~A~~~y-~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASY-NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred CCccHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 4566666666677774 889999999999999998853
Q ss_pred -h-hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 133 -G-RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 133 -~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
. +...++.++|+.+|++++++||....+|..+|.-|..+.+ -..||+.|++|++++|.+..+|+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------------t~AAi~sYRrAvdi~p~DyRAWY 402 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------------THAAIESYRRAVDINPRDYRAWY 402 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------------cHHHHHHHHHHHhcCchhHHHHh
Confidence 1 2334899999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.||.+|.- ++-..=|+ -+|++|+++.|++...|..||.||.++++. ++|+++|.+|+..
T Consensus 403 GLGQaYei----m~Mh~YaL-------yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~----------~eAiKCykrai~~ 461 (559)
T KOG1155|consen 403 GLGQAYEI----MKMHFYAL-------YYFQKALELKPNDSRLWVALGECYEKLNRL----------EEAIKCYKRAILL 461 (559)
T ss_pred hhhHHHHH----hcchHHHH-------HHHHHHHhcCCCchHHHHHHHHHHHHhccH----------HHHHHHHHHHHhc
Confidence 99999998 88888888 889999999999999999999999999997 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 291 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
...+..++..||.+|.++++..++...+...++
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 988999999999999999999888766544333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=181.64 Aligned_cols=195 Identities=17% Similarity=0.148 Sum_probs=169.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh------------------------hhhhhhHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG------------------------RSRQRILTFAAKRY 147 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~~~~~~~A~~~~ 147 (365)
+..+|+++.+++.+|.++. ..|++++|+.+|++++..+|.. ....|++++|+.+|
T Consensus 296 L~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6788999999999999994 9999999999999999988741 23458999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 148 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 148 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
+++++++|++..++..+|.++...|+ +++|+.+|+++++++|++..++..++.++.. ++++
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~--------------~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-----~~~~ 435 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKD--------------YAAAERYYQQALRMDPGNTNAVRGLANLYRQ-----QSPE 435 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCHH
Confidence 99999999999999999999999999 9999999999999999999999888887642 2334
Q ss_pred HHHHH------------------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH
Q 017806 228 EAEEL------------------------------------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (365)
Q Consensus 228 ~A~~~------------------------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 271 (365)
+|+.. +++|+..|+++++++|+++.+++.+|.+|...|++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~---- 511 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR---- 511 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----
Confidence 33322 23456899999999999999999999999999996
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
++|+..|++++..+|+++.+++.++.++...++..++..
T Consensus 512 ------~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 512 ------SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred ------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999998888777776655543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=176.56 Aligned_cols=154 Identities=16% Similarity=0.037 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
|++++|+.+|.++++.+|.+...+..++......|+ +++|+.+|+++++++|+ +.++.++|.++.
T Consensus 556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr--------------~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~ 620 (987)
T PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ--------------PELALNDLTRSLNIAPS-ANAYVARATIYR 620 (987)
T ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 444455555555555444444444444444444444 99999999999999996 889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
. .|++++|+ ..|++++.++|+++.+++++|.++...|++ ++|+..|+++++++|+++.+
T Consensus 621 ~----lG~~deA~-------~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~----------eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 621 Q----RHNVPAAV-------SDLRAALELEPNNSNYQAALGYALWDSGDI----------AQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred H----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHH
Confidence 9 99999999 779999999999999999999999999996 99999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
++++|.++..+|+...+...+..++...|+
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999888777766666666665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=158.89 Aligned_cols=226 Identities=19% Similarity=0.176 Sum_probs=180.5
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
..++-.+|+-++ ..|+|++||.+|.+||.+.|. |+...|++++.++...++|+++|+...+++.++.++
T Consensus 115 A~~lK~~GN~~f-~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 115 AAALKTKGNKFF-RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHHhhhhhhh-hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 456677899896 999999999999999999987 566779999999999999999999999999999999
Q ss_pred HHhcCcccc-----------------------------------------------------------------------
Q 017806 169 QESADNVSL----------------------------------------------------------------------- 177 (365)
Q Consensus 169 ~~~~~~~~a----------------------------------------------------------------------- 177 (365)
..+|+...+
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 999985555
Q ss_pred ----------------------------------------------------------CCCCchhhhHHHHHHHHHHHHH
Q 017806 178 ----------------------------------------------------------DSTSPSKDALLEEACKKYDEAT 199 (365)
Q Consensus 178 ----------------------------------------------------------~~~~~~~~~~~~~A~~~~~~al 199 (365)
+|...+--|++-.|...|+.+|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 2222223377777788888888
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHH
Q 017806 200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT 279 (365)
Q Consensus 200 ~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 279 (365)
.++|.+...|..+|.+|.+ ..+-.+-. +.|.+|..+||.++++|+.+|.+++-++++ ++
T Consensus 354 ~l~~~~~~lyI~~a~~y~d----~~~~~~~~-------~~F~~A~~ldp~n~dvYyHRgQm~flL~q~----------e~ 412 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYAD----ENQSEKMW-------KDFNKAEDLDPENPDVYYHRGQMRFLLQQY----------EE 412 (606)
T ss_pred hcCcccchHHHHHHHHHhh----hhccHHHH-------HHHHHHHhcCCCCCchhHhHHHHHHHHHHH----------HH
Confidence 8888887778888888888 77777777 789999999999999999999999999995 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---------------hHHHHHHHHHHHHHhcC
Q 017806 280 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---------------ELYSQSAIYIAAAHALK 344 (365)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~a~~~~~~a~~~~ 344 (365)
|+..|++++.++|+++.++..++.++++.++......-+..++..=|. ..|..+..+|.++..+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999988766554443333332222 33555555555555555
Q ss_pred cc
Q 017806 345 PS 346 (365)
Q Consensus 345 ~~ 346 (365)
|.
T Consensus 493 ~~ 494 (606)
T KOG0547|consen 493 PR 494 (606)
T ss_pred cc
Confidence 54
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=169.63 Aligned_cols=196 Identities=10% Similarity=0.020 Sum_probs=161.3
Q ss_pred hhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
..|++++|+..+++++..++. .+...|++++|+..|.++++.+|+++.+++++|.++...|+
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~------- 261 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR------- 261 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------
Confidence 455555555555555554321 23345889999999999999999999999999999999999
Q ss_pred CchhhhHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 017806 181 SPSKDALLEE----ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (365)
Q Consensus 181 ~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~ 256 (365)
+++ |+..|++++.++|+++.++..+|.++.. .|++++|+ ..++++++++|+++.++.+
T Consensus 262 -------~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~-------~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 262 -------SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAI-------PLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred -------chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHH
Confidence 775 8999999999999999999999999999 99999999 7799999999999999999
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---hHHHHH
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---ELYSQS 333 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~a 333 (365)
+|.++...|++ ++|+..|++++..+|+++..+..+|.++...|+...+...+..++...|. ..|..+
T Consensus 324 La~~l~~~G~~----------~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea 393 (656)
T PRK15174 324 YARALRQVGQY----------TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEG 393 (656)
T ss_pred HHHHHHHCCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHH
Confidence 99999999996 99999999999999999888888899999999988887776665555444 334444
Q ss_pred HHHHHHHHh
Q 017806 334 AIYIAAAHA 342 (365)
Q Consensus 334 ~~~~~~a~~ 342 (365)
...+..+..
T Consensus 394 ~~~~~~~~~ 402 (656)
T PRK15174 394 LLALDGQIS 402 (656)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=175.76 Aligned_cols=195 Identities=13% Similarity=0.038 Sum_probs=172.2
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh-------hhhh---hhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG-------RSRQ---RILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
|.....++.+|.++ ...|++++|+.+|++++..+|.. .... |++++|+.+|+++++++|+ ..++.++|
T Consensus 539 ~p~~~a~~~la~al-l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA 616 (987)
T PRK09782 539 DMSNEDLLAAANTA-QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARA 616 (987)
T ss_pred CCCcHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 44456678889888 49999999999999999998651 1223 9999999999999999996 99999999
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
.++..+|+ +++|+.+|++++.++|+++.+++++|.++.. .|++++|+ ..|+++++
T Consensus 617 ~~l~~lG~--------------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi-------~~l~~AL~ 671 (987)
T PRK09782 617 TIYRQRHN--------------VPAAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSR-------EMLERAHK 671 (987)
T ss_pred HHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHH
Confidence 99999999 9999999999999999999999999999999 99999999 77999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCC
Q 017806 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS 325 (365)
Q Consensus 246 ~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~ 325 (365)
++|+++.+++++|.++..+|++ ++|+.+|++++.++|+++.+....|.+.....+...+.........++
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~----------~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDM----------AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999996 999999999999999999999999999988887666555443333333
Q ss_pred cc
Q 017806 326 PN 327 (365)
Q Consensus 326 ~~ 327 (365)
+.
T Consensus 742 ~~ 743 (987)
T PRK09782 742 FD 743 (987)
T ss_pred cc
Confidence 33
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=157.44 Aligned_cols=216 Identities=17% Similarity=0.107 Sum_probs=189.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
.+..|..+..|+..|..|+ ..|++++|..+|.++..+++. .+..+++.++|+.+|..|-++.|+...-.
T Consensus 305 V~~yP~~a~sW~aVg~YYl-~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYL-MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred HHhCCCCCcchhhHHHHHH-HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence 5778999999999999995 999999999999999999976 34556999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.-|..+++ +.-|..+|.+|+.+.|.++-.+..+|.+.+. .+.|.+|+..|+.++....
T Consensus 384 LYlgmey~~t~n--------------~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 384 LYLGMEYMRTNN--------------LKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHHHHHHhcc--------------HHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhh
Confidence 999999999999 9999999999999999999999999999999 9999999977666664444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
......+.....++|||.++.+++.+ ++|+.+|+++|.+.|.++.++..+|.+|..+|+.
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~----------~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl---------- 505 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKY----------EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL---------- 505 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhH----------HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh----------
Confidence 44444444567899999999999996 9999999999999999999999999999999966
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 322 REVSPNELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
..|..+|.+++.++|++.....-|+
T Consensus 506 ---------d~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 506 ---------DKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred ---------HHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4566777888888888766655554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=153.85 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=168.4
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
..++..+|..++ ..|+...|...|..+|.+++. .+..+++-++-...|.++..+||.++++|+.+|.++
T Consensus 326 A~al~~~gtF~f-L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 326 AEALLLRGTFHF-LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHhhhhhh-hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 678999999996 999999999999999999976 244457888999999999999999999999999999
Q ss_pred HHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
+-+++ |++|+..|+++++++|++.-++..++.+.++ ++++++++ +.|+.+.+..|
T Consensus 405 flL~q--------------~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m-------~~Fee~kkkFP 459 (606)
T KOG0547|consen 405 FLLQQ--------------YEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESM-------KTFEEAKKKFP 459 (606)
T ss_pred HHHHH--------------HHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHhCC
Confidence 99999 9999999999999999999999999999999 99999999 88999999999
Q ss_pred CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhh-hhhhhhcCcCCC
Q 017806 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD------FHRAIYNLGTVLYGLA-EDTLRTGGTVNP 321 (365)
Q Consensus 249 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g-~~~~a~~~~~~~ 321 (365)
+.+++++..|.++..++++ ++|++.|.+|+++.|. ++..+.+.|.+..+.. +...+......+
T Consensus 460 ~~~Evy~~fAeiLtDqqqF----------d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 460 NCPEVYNLFAEILTDQQQF----------DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA 529 (606)
T ss_pred CCchHHHHHHHHHhhHHhH----------HHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH
Confidence 9999999999999999996 9999999999999999 7777777776665533 333344444445
Q ss_pred CCCCcc
Q 017806 322 REVSPN 327 (365)
Q Consensus 322 ~~~~~~ 327 (365)
++++|.
T Consensus 530 ~e~Dpk 535 (606)
T KOG0547|consen 530 IELDPK 535 (606)
T ss_pred HccCch
Confidence 555554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=163.74 Aligned_cols=191 Identities=14% Similarity=0.042 Sum_probs=163.8
Q ss_pred HHhcCCChhH--hhhcHHHHHHHHHHhhccChhh----------hh---------hhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 102 SFSQGNTPHQ--LAEQNNAAMELINSVTGVDEEG----------RS---------RQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 102 ~~~~g~~~~~--~~g~~~~A~~~~~~al~~~~~~----------~~---------~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
++.+|...+. ..+.+++|+.+|++++.++|.. +. ..+++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 5666753311 2356889999999999999871 11 1245899999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+..+|.++...|+ +++|+.+|+++++++|+++.+++.+|.++.. .|++++|+ ..+
T Consensus 341 ~~~lg~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi-------~~~ 395 (553)
T PRK12370 341 LGLLGLINTIHSE--------------YIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEAL-------QTI 395 (553)
T ss_pred HHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHH
Confidence 9999999999999 9999999999999999999999999999999 99999999 889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-FDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
+++++++|.++.+++.++.++...|++ ++|+..+++++... |+++.++.++|.++..+|+.+++.....
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~----------eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGI----------DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCH----------HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999988887788788888886 99999999999885 8889999999999999999888877654
Q ss_pred CCCCCCcc
Q 017806 320 NPREVSPN 327 (365)
Q Consensus 320 ~~~~~~~~ 327 (365)
......+.
T Consensus 466 ~~~~~~~~ 473 (553)
T PRK12370 466 EISTQEIT 473 (553)
T ss_pred Hhhhccch
Confidence 44443443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=150.97 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=162.3
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
-.++.-...|+.| ...+++++|+.+|++++.++|. -+...++...|+..|++|++++|.+..+|+.||+
T Consensus 328 yR~ETCCiIaNYY-Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 328 YRPETCCIIANYY-SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ 406 (559)
T ss_pred CCccceeeehhHH-HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence 3455566778888 6999999999999999999987 2556689999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
+|..++. ..-|+-+|++|+.+.|++...|..||.+|.+ +++.++|+ ++|.+++..
T Consensus 407 aYeim~M--------------h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAi-------KCykrai~~ 461 (559)
T KOG1155|consen 407 AYEIMKM--------------HFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAI-------KCYKRAILL 461 (559)
T ss_pred HHHHhcc--------------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHH-------HHHHHHHhc
Confidence 9999999 9999999999999999999999999999999 99999999 889999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ-------LQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
...+..++..+|.+|.++++. .+|..+|++.++ .+|.-..+...|+.-+.+.+++.+
T Consensus 462 ~dte~~~l~~LakLye~l~d~----------~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDL----------NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred cccchHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 888899999999999999996 999999999998 345556677778888888775543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-17 Score=161.31 Aligned_cols=184 Identities=14% Similarity=-0.015 Sum_probs=166.4
Q ss_pred hccCCCchHHHHhcCCChhHhh---------hcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLA---------EQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~---------g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~ 152 (365)
+..+|+++.++..+|.++. .. +++++|+..+++++.++|. .+...|++++|+.+|+++++
T Consensus 288 l~ldP~~a~a~~~La~~~~-~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 288 VNMSPNSIAPYCALAECYL-SMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HhcCCccHHHHHHHHHHHH-HHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7889999999999887763 33 3489999999999999987 24456999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
++|+++.+++.+|.++...|+ +++|+.+|+++++++|.++.+++.++.++.. .|++++|+
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~--------------~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~-- 426 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQ--------------LEEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAI-- 426 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHH--
Confidence 999999999999999999999 9999999999999999999888888888888 99999999
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
..+++++..+ |+++.++.++|.+|..+|++ ++|+..+.+.+...|.+..++..++.++...|+.
T Consensus 427 -----~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~----------~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (553)
T PRK12370 427 -----RLGDELRSQHLQDNPILLSMQVMFLSLKGKH----------ELARKLTKEISTQEITGLIAVNLLYAEYCQNSER 491 (553)
T ss_pred -----HHHHHHHHhccccCHHHHHHHHHHHHhCCCH----------HHHHHHHHHhhhccchhHHHHHHHHHHHhccHHH
Confidence 7789988775 88999999999999999996 9999999999999999999999999999988853
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=157.52 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=151.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHhCCCC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIERNPED 157 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~~p~~ 157 (365)
+..+|+++.+++.+|.++. ..|++++|+..+++++..... .+...|++++|+..|.++++.+|.+
T Consensus 62 l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~ 140 (389)
T PRK11788 62 LKVDPETVELHLALGNLFR-RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA 140 (389)
T ss_pred HhcCcccHHHHHHHHHHHH-HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence 5678899999999999994 999999999999998875421 3445699999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
..++..++.++...|+ +++|+..|++++...|.+. ..+..+|.++.. .|++++|+
T Consensus 141 ~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-- 200 (389)
T PRK11788 141 EGALQQLLEIYQQEKD--------------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAAR-- 200 (389)
T ss_pred HHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHH--
Confidence 9999999999999999 8888888888887776542 245677777777 88888888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~ 311 (365)
..|+++++.+|++..+++.+|.++...|++ ++|+..|++++..+|.+ ..++..++.++...|+.
T Consensus 201 -----~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 201 -----ALLKKALAADPQCVRASILLGDLALAQGDY----------AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred -----HHHHHHHhHCcCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 667777777777777888888888888875 77777777777776655 34566677777777766
Q ss_pred hhhhcCcCCCCC
Q 017806 312 TLRTGGTVNPRE 323 (365)
Q Consensus 312 ~~a~~~~~~~~~ 323 (365)
..+......+..
T Consensus 266 ~~A~~~l~~~~~ 277 (389)
T PRK11788 266 AEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHHH
Confidence 666554443333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=176.35 Aligned_cols=207 Identities=12% Similarity=0.053 Sum_probs=176.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh--------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG-------------------------------------- 133 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------- 133 (365)
+..+|.++.+++.+|.++ ...|++++|+.+|++++..+|..
T Consensus 378 l~~~P~~~~a~~~Lg~~~-~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVA-MARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 677899999999999999 49999999999999999888651
Q ss_pred --------------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHH
Q 017806 134 --------------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 199 (365)
Q Consensus 134 --------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al 199 (365)
+...|++++|+.+|+++++++|+++.+++.+|.++...|+ +++|+..|++++
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~--------------~~~A~~~l~~al 522 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ--------------RSQADALMRRLA 522 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHH
Confidence 0124899999999999999999999999999999999999 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------H-------------------------HHHHHHhc
Q 017806 200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT--------K-------------------------NYEKAVQL 246 (365)
Q Consensus 200 ~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~--------~-------------------------~~~~al~~ 246 (365)
+++|+++..++.+|..+.. .|++++|+..+++.. . .....++.
T Consensus 523 ~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999998888 899999887655310 0 01123456
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
+|.++.++..+|.++...|++ ++|+.+|+++++.+|+++.++.+++.++...|+..++...+.......|
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~----------~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDY----------AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 788889999999999999996 9999999999999999999999999999999988888776665555444
Q ss_pred c
Q 017806 327 N 327 (365)
Q Consensus 327 ~ 327 (365)
.
T Consensus 669 ~ 669 (1157)
T PRK11447 669 D 669 (1157)
T ss_pred C
Confidence 3
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=135.59 Aligned_cols=129 Identities=15% Similarity=0.097 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 222 (365)
-..+|+++++++|++ ++.+|.++...|+ +++|+.+|++++.++|.+..+|+++|.++..
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---- 70 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGD--------------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMM---- 70 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----
Confidence 356789999999985 6789999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.|++++|+ ..|++++.++|+++.+++++|.++..+|++ ++|+..|++++.+.|+++..+.++|
T Consensus 71 ~g~~~~A~-------~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~----------~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 71 LKEYTTAI-------NFYGHALMLDASHPEPVYQTGVCLKMMGEP----------GLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HhhHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999999 889999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHhh
Q 017806 303 TVLYGLA 309 (365)
Q Consensus 303 ~~~~~~g 309 (365)
.+...++
T Consensus 134 ~~~~~l~ 140 (144)
T PRK15359 134 NAQIMVD 140 (144)
T ss_pred HHHHHHH
Confidence 9887665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=139.43 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=154.5
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..+.+++.+|.++. ..|++++|+..+++++..+|. .+...|++++|+..|+++++.+|.+..++.++|.
T Consensus 29 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYL-EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34677888999994 899999999999999888765 2445689999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
++...|+ +++|+..|++++... +.....+.++|.++.. .|++++|+ ..|.+++
T Consensus 108 ~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~~~ 162 (234)
T TIGR02521 108 FLCQQGK--------------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAE-------KYLTRAL 162 (234)
T ss_pred HHHHccc--------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHH-------HHHHHHH
Confidence 9999998 999999999998754 4567788889999988 99999998 7788888
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
..+|+++.++..+|.++...|++ ++|+..+++++...|.++..+..++.++...|+...
T Consensus 163 ~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 163 QIDPQRPESLLELAELYYLRGQY----------KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HhCcCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 88899889999999999999986 999999999999888888888888888888876553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-17 Score=168.00 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=147.9
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
...|.++.+++.+|.++ ...|++++|+..|++++...|. .+...|++++|+..|+++++.+|++..++.
T Consensus 595 ~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQ-LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred HcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 44566666777777777 3777777777777777666554 233446777777777777777777777777
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------- 235 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------- 235 (365)
.++.++...|+ +++|+..++++.+..|.++..+..+|.++.. .|++++|+..|++
T Consensus 674 ~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 674 GLAQLLLAAKR--------------TESAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCC
Confidence 77777766666 5555555555544444455555555555555 5555555544332
Q ss_pred -------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 236 -------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 236 -------------------A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
|+..++++++.+|++..+++.+|.++...|++ ++|+..|+++++.+|+++.
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY----------DKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHhCCCCHH
Confidence 23556667777777777777777777777775 8899999999988898888
Q ss_pred HHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---------------hHHHHHHHHHHHHHhcCccHHHH
Q 017806 297 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---------------ELYSQSAIYIAAAHALKPSYSVY 350 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~a~~~~~~a~~~~~~~~~~ 350 (365)
++.++|.++...|+ .++......+....|+ ..+..+..+|.++....|.+...
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Confidence 88889988888887 5555554444443332 12455666666666666654433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=158.39 Aligned_cols=163 Identities=22% Similarity=0.282 Sum_probs=137.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+++.|++.+|+-+|+.++..+|.+.++|..||.+....++ -..||..++++++++|+|..++..||
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~--------------E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN--------------EQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc--------------hHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4556888888888888888888888888888888888887 78888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHH-------------------------------------------------------------
Q 017806 214 IAISDRAKMRGRTKEAEEL------------------------------------------------------------- 232 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~------------------------------------------------------------- 232 (365)
..|.. .|.-.+|+.+
T Consensus 361 VSytN----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 361 VSYTN----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHHhh----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 88877 6666666555
Q ss_pred ---------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 233 ---------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 233 ---------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
|++|+.+|+.||..+|++...|+.||-++..-.+. ++||..|++|+++.|++.++++|||+
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 44578999999999999999999999999998886 99999999999999999999999999
Q ss_pred HHHHhhhhhhhhcCcCCCCCC
Q 017806 304 VLYGLAEDTLRTGGTVNPREV 324 (365)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~ 324 (365)
++..+|.+.++...+..++.+
T Consensus 507 S~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHh
Confidence 999999887777765554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=132.92 Aligned_cols=147 Identities=24% Similarity=0.314 Sum_probs=135.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
+++..|++..|...++++|+.+|.+..+|..++.+|...|+ .+.|.+.|++|++++|++.++++|.
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------------~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------------NDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------hhhHHHHHHHHHhcCCCccchhhhh
Confidence 46778999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
|..+.. +|++++|. ..|++|+. +|. ...+|-|+|.|-.+.|++ +.|..+|+++++
T Consensus 110 G~FLC~----qg~~~eA~-------q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~----------~~A~~~l~raL~ 167 (250)
T COG3063 110 GAFLCA----QGRPEEAM-------QQFERALA-DPAYGEPSDTLENLGLCALKAGQF----------DQAEEYLKRALE 167 (250)
T ss_pred hHHHHh----CCChHHHH-------HHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCc----------hhHHHHHHHHHH
Confidence 999999 99999999 77888876 444 578999999999999997 999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 290 LQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 290 ~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
++|+++.+...++..++..|+...+.
T Consensus 168 ~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 168 LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999999988765443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=144.02 Aligned_cols=204 Identities=12% Similarity=0.060 Sum_probs=148.3
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..+..++.+|.++ ...|++++|+..|++++.++|. .+...|++++|+..|+++++++|++..+|.++|.
T Consensus 62 ~~a~~~~~~g~~~-~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 62 ERAQLHYERGVLY-DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred hhHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4477899999999 5999999999999999999887 2445699999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++...|+ +++|+..|+++++++|+++..... ..+... .+++++|+ ..|.+++..
T Consensus 141 ~l~~~g~--------------~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~----~~~~~~A~-------~~l~~~~~~ 194 (296)
T PRK11189 141 ALYYGGR--------------YELAQDDLLAFYQDDPNDPYRALW-LYLAES----KLDPKQAK-------ENLKQRYEK 194 (296)
T ss_pred HHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHc----cCCHHHHH-------HHHHHHHhh
Confidence 9999999 999999999999999998742111 123334 67888888 556655544
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
.+. ..|. .+.++..+|+... ...++.+...++.+++++|+..++|+++|.++..+|+..
T Consensus 195 ~~~--~~~~-~~~~~~~lg~~~~----~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~-------------- 253 (296)
T PRK11189 195 LDK--EQWG-WNIVEFYLGKISE----ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD-------------- 253 (296)
T ss_pred CCc--cccH-HHHHHHHccCCCH----HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH--------------
Confidence 322 2232 4666677777511 012233344445555777888899999999999999765
Q ss_pred chHHHHHHHHHHHHHhcCc-cHHHHHHH
Q 017806 327 NELYSQSAIYIAAAHALKP-SYSVYSSA 353 (365)
Q Consensus 327 ~~~~~~a~~~~~~a~~~~~-~~~~~~~a 353 (365)
.+..+|.++..++| ++..+..+
T Consensus 254 -----~A~~~~~~Al~~~~~~~~e~~~~ 276 (296)
T PRK11189 254 -----EAAALFKLALANNVYNFVEHRYA 276 (296)
T ss_pred -----HHHHHHHHHHHhCCchHHHHHHH
Confidence 45555666666664 44444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=148.14 Aligned_cols=182 Identities=15% Similarity=0.086 Sum_probs=144.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|+++.+++.+|.++ ...|++++|+..|++++.++|. .++..|++++|+..|+++++++|+++...
T Consensus 91 l~l~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~ 169 (296)
T PRK11189 91 LALRPDMADAYNYLGIYL-TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA 169 (296)
T ss_pred HHcCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 678999999999999999 5999999999999999999986 34556999999999999999999997422
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
.++ .+....++ +++|+..|.+++...+.. .|. .+.+... +|++.++ ..++.+.+.++
T Consensus 170 ~~~-~l~~~~~~--------------~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~----lg~~~~~-~~~~~~~~~~~ 226 (296)
T PRK11189 170 LWL-YLAESKLD--------------PKQAKENLKQRYEKLDKE--QWG-WNIVEFY----LGKISEE-TLMERLKAGAT 226 (296)
T ss_pred HHH-HHHHccCC--------------HHHHHHHHHHHHhhCCcc--ccH-HHHHHHH----ccCCCHH-HHHHHHHhcCC
Confidence 222 23445567 999999998877654322 232 4666667 8887665 35566666677
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF-DFHRAIYNLGTVLYG 307 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 307 (365)
..++++|+.+++|+++|.++..+|++ ++|+.+|++|+..+| ++.+..+.+..+...
T Consensus 227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~----------~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 227 DNTELAERLCETYFYLAKYYLSLGDL----------DEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 77888899999999999999999996 999999999999997 555655555444443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=164.04 Aligned_cols=199 Identities=17% Similarity=0.121 Sum_probs=123.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
....|.++..+..+|.++. ..|++++|+..|++++..+|. .+...|++++|+..|++++..+|.+..++
T Consensus 458 ~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 3456677778888888884 888888888888888877765 23345778888888888888888888888
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..++.++...|+ +++|+..|++++..+|.+...+..++.++.. .|++++|+ ..++
T Consensus 537 ~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~ 591 (899)
T TIGR02917 537 LALAGLYLRTGN--------------EEEAVAWLEKAAELNPQEIEPALALAQYYLG----KGQLKKAL-------AILN 591 (899)
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHH-------HHHH
Confidence 888888887777 6666666666666666666666666666666 66666666 3344
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------------------hhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------KQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
+++..+|.++.+|..+|.++...|+++.|.. ..|++++|+..|++++..+|++..+
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 671 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 4444445555555555555555555300000 0011255555555555555555555
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 017806 298 IYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~~ 316 (365)
+..++.++...|+...+..
T Consensus 672 ~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 5555555555555444433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=144.68 Aligned_cols=241 Identities=19% Similarity=0.132 Sum_probs=200.2
Q ss_pred HhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 103 FSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 103 ~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
...|+..+ ..|+++.|+.+|..+|.++|. ++...|+|++|++.-.+.++++|+.+..|..+|..+.-+|
T Consensus 6 k~kgnaa~-s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 6 KEKGNAAF-SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHhhc-ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34577775 999999999999999999987 4666799999999999999999999999999999999999
Q ss_pred CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC---------------------------
Q 017806 173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR--------------------------- 225 (365)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~--------------------------- 225 (365)
+ |++|+..|.++|+.+|+|..+..+|..++.........
T Consensus 85 ~--------------~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 85 D--------------YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred c--------------HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHH
Confidence 9 99999999999999999999999998887432100000
Q ss_pred --------------------HHHHH-------------------------------------------------------
Q 017806 226 --------------------TKEAE------------------------------------------------------- 230 (365)
Q Consensus 226 --------------------~~~A~------------------------------------------------------- 230 (365)
...++
T Consensus 151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 00000
Q ss_pred -------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH-------------------------------
Q 017806 231 -------ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------------- 272 (365)
Q Consensus 231 -------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------------- 272 (365)
..|..|+++|.+++.++ .+...+++.+.+|...|.+.....
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 00444889999999999 888888888888888877632211
Q ss_pred ------------------------------------------------------------hhhHHHHHHHHHHHHHHhCC
Q 017806 273 ------------------------------------------------------------KQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 273 ------------------------------------------------------------~~~~~~~A~~~~~~al~~~p 292 (365)
+.|+|..|+..|.+||..+|
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 67999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---------------hHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---------------ELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
+++..|.|.+.||.++|....++.+...+++++|+ ..|..+...|..+.+.+|++..+...++.+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 99999999999999999999999988888888887 237888888899999999988887777665
Q ss_pred hh
Q 017806 358 RS 359 (365)
Q Consensus 358 ~~ 359 (365)
-.
T Consensus 470 ~~ 471 (539)
T KOG0548|consen 470 VE 471 (539)
T ss_pred HH
Confidence 43
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=147.84 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=159.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhh------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQ------------------------ 137 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~------------------------ 137 (365)
+..+|.+.++|..+|.+. ...++-..||..+++++.++|. ++..+
T Consensus 312 VkqdP~haeAW~~LG~~q-aENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQ-AENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HhhChHHHHHHHHhhhHh-hhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 788999999999999999 5999999999999999999976 11111
Q ss_pred -----------------hhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 138 -----------------RILTFAAKRYANAIERNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 138 -----------------~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
..+..-.+.|-.+...+| .+++++..||.+|...|+ |++|+.||+.|
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e--------------fdraiDcf~~A 456 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE--------------FDRAVDCFEAA 456 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH--------------HHHHHHHHHHH
Confidence 223344555666666777 789999999999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 199 l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
|...|++...|+.||..+.. ..+..+|+ ..|++|+++.|++..+++|||.+++.+|.+ +
T Consensus 457 L~v~Pnd~~lWNRLGAtLAN----~~~s~EAI-------sAY~rALqLqP~yVR~RyNlgIS~mNlG~y----------k 515 (579)
T KOG1125|consen 457 LQVKPNDYLLWNRLGATLAN----GNRSEEAI-------SAYNRALQLQPGYVRVRYNLGISCMNLGAY----------K 515 (579)
T ss_pred HhcCCchHHHHHHhhHHhcC----CcccHHHH-------HHHHHHHhcCCCeeeeehhhhhhhhhhhhH----------H
Confidence 99999999999999999999 99999999 889999999999999999999999999995 9
Q ss_pred HHHHHHHHHHHhCCC-----C-----HHHHHHHHHHHHHhhhhh
Q 017806 279 TAISKFRAAIQLQFD-----F-----HRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 279 ~A~~~~~~al~~~p~-----~-----~~~~~~lg~~~~~~g~~~ 312 (365)
+|+++|-.||.+.+. . -.+|..|-.++...++.+
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999998654 1 257888877777777655
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-16 Score=140.84 Aligned_cols=171 Identities=10% Similarity=0.038 Sum_probs=144.5
Q ss_pred HhhhcHHHHHHHHHHhhccChhh----------hhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCC
Q 017806 111 QLAEQNNAAMELINSVTGVDEEG----------RSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179 (365)
Q Consensus 111 ~~~g~~~~A~~~~~~al~~~~~~----------~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~ 179 (365)
...++.++|+..+.++|.++|.. ....| ++++++..+.+++..+|.+..+|++++.++..+|+
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~------ 121 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP------ 121 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc------
Confidence 36677788888888888888772 22234 68999999999999999999999999999998886
Q ss_pred CCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
..+++++.+++++++++|+|..+|..+|.++.. .|++++++ ..+.++|+.||++..+|+++|.
T Consensus 122 ------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL-------~~~~~~I~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 122 ------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDEL-------EYCHQLLEEDVRNNSAWNQRYF 184 (320)
T ss_pred ------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHH-------HHHHHHHHHCCCchhHHHHHHH
Confidence 013788999999999999999999999999999 99998888 8899999999999999999999
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
++.++++... .....++++.+..++|.++|+|..+|+.++.++..
T Consensus 185 vl~~~~~l~~---~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 185 VITRSPLLGG---LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHhcccccc---ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 9988733100 00113578999999999999999999999999987
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=145.08 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=112.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhC--CCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERN--PEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 160 (365)
+..++.++..+..++.++ ..+++++|+.++.++...++. .+...++++++...++++.... +.++..
T Consensus 71 ~~~~~~~~~~~~~l~~l~--~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 148 (280)
T PF13429_consen 71 LASDKANPQDYERLIQLL--QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARF 148 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHH
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHH
Confidence 344445555555555552 667777777777666555443 2345588888888888877655 678888
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|..+|.++...|+ .++|+.+|+++++++|++..++..++.++.. .|+++++. ..+
T Consensus 149 ~~~~a~~~~~~G~--------------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~-------~~l 203 (280)
T PF13429_consen 149 WLALAEIYEQLGD--------------PDKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEAR-------EAL 203 (280)
T ss_dssp HHHHHHHHHHCCH--------------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHH-------HHH
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHH-------HHH
Confidence 9999999999998 9999999999999999999999999999988 89998877 456
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
....+..|+++..|..+|.++..+|+. ++|+.+|++++..+|+|+..+.++|.++...|+..++...+
T Consensus 204 ~~~~~~~~~~~~~~~~la~~~~~lg~~----------~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 204 KRLLKAAPDDPDLWDALAAAYLQLGRY----------EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHH-HTSCCHCHHHHHHHHHHT-H----------HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred HHHHHHCcCHHHHHHHHHHHhcccccc----------ccccccccccccccccccccccccccccccccccccccccc
Confidence 665666678888899999999999996 99999999999999999999999999999999888776654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=138.32 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=142.8
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CccccCCCCchhhhHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~a~~~~~~~~~~~~~ 190 (365)
..+++.+|+.+|+.++... +.+++|+..+.++|.++|.+..+|+.+|.++..++ . +++
T Consensus 32 y~~~~~~a~~~~ra~l~~~-------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~--------------l~e 90 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASD-------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDAD--------------LEE 90 (320)
T ss_pred eCHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchh--------------HHH
Confidence 6688999999999887643 45789999999999999999999999999999998 5 899
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT--KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~--~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
++.+++++++.+|++..+|+.++.++.. .|+. ++++ ..+.++++.+|++..+|.++|.++..+|++
T Consensus 91 eL~~~~~~i~~npknyqaW~~R~~~l~~----l~~~~~~~el-------~~~~kal~~dpkNy~AW~~R~w~l~~l~~~- 158 (320)
T PLN02789 91 ELDFAEDVAEDNPKNYQIWHHRRWLAEK----LGPDAANKEL-------EFTRKILSLDAKNYHAWSHRQWVLRTLGGW- 158 (320)
T ss_pred HHHHHHHHHHHCCcchHHhHHHHHHHHH----cCchhhHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHhhhH-
Confidence 9999999999999999999999999988 8874 4444 779999999999999999999999999995
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++|++++.++|+.+|+|..+|+.+|.++..++
T Consensus 159 ---------~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 159 ---------EDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred ---------HHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 99999999999999999999999999988764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=131.91 Aligned_cols=155 Identities=22% Similarity=0.280 Sum_probs=139.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...|++++|+..++++++.+|++..++..+|.++...|+ +++|+..|++++++.|.+..+++++
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE--------------LEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45667899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
|.++.. .|++++|+ ..|++++.. .+.....+.++|.++...|++ ++|+..|.+++..
T Consensus 106 ~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~ 164 (234)
T TIGR02521 106 GTFLCQ----QGKYEQAM-------QQFEQAIEDPLYPQPARSLENAGLCALKAGDF----------DKAEKYLTRALQI 164 (234)
T ss_pred HHHHHH----cccHHHHH-------HHHHHHHhccccccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence 999999 99999999 556666553 356678999999999999996 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 291 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
+|++..++..+|.++...|+...+...+..+.
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999998877665544433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-16 Score=146.12 Aligned_cols=195 Identities=15% Similarity=0.063 Sum_probs=166.5
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCC----HHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPED----YDALY 162 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~ 162 (365)
......+.+|..+. ..|++++|+..|.+++..+|. .+...|++++|+..+++++...+.. ..++.
T Consensus 33 ~~~~~~y~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 33 NRLSRDYFKGLNFL-LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hhccHHHHHHHHHH-hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 44556677788884 899999999999999999886 2455699999999999999864332 35789
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.++...|+ +++|+..|+++++.+|.+..++..++.++.. .|++++|+ ..+++
T Consensus 112 ~La~~~~~~g~--------------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~ 166 (389)
T PRK11788 112 ELGQDYLKAGL--------------LDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAI-------DVAER 166 (389)
T ss_pred HHHHHHHHCCC--------------HHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHH-------HHHHH
Confidence 99999999999 9999999999999999999999999999999 99999999 66777
Q ss_pred HHhcCCCCH-----HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 243 AVQLNWNSP-----QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 243 al~~~p~~~-----~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+++.+|.+. ..+..+|.++...|++ ++|+..|+++++.+|++..++..+|.++...|+..++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDL----------DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777653 3567899999999996 9999999999999999999999999999999999888776
Q ss_pred cCCCCCCCcc
Q 017806 318 TVNPREVSPN 327 (365)
Q Consensus 318 ~~~~~~~~~~ 327 (365)
+..+....|.
T Consensus 237 ~~~~~~~~p~ 246 (389)
T PRK11788 237 LERVEEQDPE 246 (389)
T ss_pred HHHHHHHChh
Confidence 6655554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=128.25 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=128.5
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 191 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A 191 (365)
..|++.....+.++...- ...+...++.++++..++++++.+|++...|..+|.++...|+ +++|
T Consensus 28 ~~g~~~~v~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------------~~~A 92 (198)
T PRK10370 28 LSPKWQAVRAEYQRLADP-LHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------------YDNA 92 (198)
T ss_pred HcchHHHHHHHHHHHhCc-cccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHH
Confidence 677777765555333221 1122235778999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAI-SDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~~~g~--~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
+.+|++++.++|+++.++.++|.++ .. .|+ +++|. ..++++++.+|+++.+++++|.++...|++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~----~g~~~~~~A~-------~~l~~al~~dP~~~~al~~LA~~~~~~g~~- 160 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQ----AGQHMTPQTR-------EMIDKALALDANEVTALMLLASDAFMQADY- 160 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCCCcHHHH-------HHHHHHHHhCCCChhHHHHHHHHHHHcCCH-
Confidence 9999999999999999999999985 56 787 48888 889999999999999999999999999996
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
++|+.+|+++++++|.+..-
T Consensus 161 ---------~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 161 ---------AQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred ---------HHHHHHHHHHHhhCCCCccH
Confidence 99999999999998876543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-16 Score=124.45 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=108.3
Q ss_pred HHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHH
Q 017806 121 ELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193 (365)
Q Consensus 121 ~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~ 193 (365)
.+|++++.++|. .....|++++|+.+|.+++.++|.+..+|+++|.++...|+ +++|+.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------------~~~A~~ 79 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--------------YTTAIN 79 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------------HHHHHH
Confidence 445555555554 23456889999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 194 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+|++++.++|+++.+++++|.++.. .|++++|+ ..|+++++++|+++..|.++|.+...++
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~----~g~~~eAi-------~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKM----MGEPGLAR-------EAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999 8899999999999999999999987764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=121.68 Aligned_cols=176 Identities=16% Similarity=0.095 Sum_probs=156.1
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 169 (365)
.+...+|.-|+ ..|++..|...+++++..+|+. +...|+.+.|.+.|++++.++|++.++++|.|..+.
T Consensus 36 ~arlqLal~YL-~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYL-QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56777888885 9999999999999999999982 445699999999999999999999999999999999
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
.+|+ +++|...|++|+.. .+..++.|-|+|.|..+ .|+++.|. +.|+++++++
T Consensus 115 ~qg~--------------~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~-------~~l~raL~~d 169 (250)
T COG3063 115 AQGR--------------PEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAE-------EYLKRALELD 169 (250)
T ss_pred hCCC--------------hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHH-------HHHHHHHHhC
Confidence 9999 99999999999974 35578899999999999 99999999 8899999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
|+++.+...++..++..|++ -.|..++++....-+-.++.+.....+-..+|+.
T Consensus 170 p~~~~~~l~~a~~~~~~~~y----------~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 170 PQFPPALLELARLHYKAGDY----------APARLYLERYQQRGGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred cCCChHHHHHHHHHHhcccc----------hHHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence 99999999999999999996 9999999998888777777666555555566644
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-16 Score=135.37 Aligned_cols=195 Identities=14% Similarity=0.075 Sum_probs=146.2
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..++.+..+..+| .+..+...|+..|.+.+...|. .+...+++++|.++|+.+++.+|.+.++...+|.
T Consensus 254 ~~~dTfllLskvY-~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~ 332 (478)
T KOG1129|consen 254 PHPDTFLLLSKVY-QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV 332 (478)
T ss_pred CchhHHHHHHHHH-HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence 4567777777788 5888888888888888877765 1233477888888888888888888888777777
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
-|+-.++ .+-|+.+|++.+++.-.+++.+.|+|.++.. .++++-++ ..|++|+..
T Consensus 333 ~yfY~~~--------------PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L-------~sf~RAlst 387 (478)
T KOG1129|consen 333 GYFYDNN--------------PEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVL-------PSFQRALST 387 (478)
T ss_pred ccccCCC--------------hHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhH-------HHHHHHHhh
Confidence 7777777 8888888888888888888888888888887 78888888 455555544
Q ss_pred C--C-CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 247 N--W-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 247 ~--p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
. | .-+++|+|+|.+....|++ .-|.++|+-++..++++.++++|||..-.+.|+...+......+.+
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~----------nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDF----------NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred ccCcchhhhhhhccceeEEeccch----------HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 3 2 2467888888888888876 8888888888888888888888888888888877777666655555
Q ss_pred CCcc
Q 017806 324 VSPN 327 (365)
Q Consensus 324 ~~~~ 327 (365)
+.|.
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 5554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=120.91 Aligned_cols=210 Identities=12% Similarity=0.062 Sum_probs=151.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------~~~~~~~~~~A~~~ 146 (365)
++..|+...+...+|.+++ .+|+++.|...|...+..+|. .++..|++..|+.+
T Consensus 99 lelKpDF~~ARiQRg~vll-K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLL-KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HhcCccHHHHHHHhchhhh-hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 4566777777777777775 778888888888888777763 23444888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
....|++.|.++..+..++.||...|+ ...||..++.+-++..++.+.++..+.+++. .|+.
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e--------------~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~----vgd~ 239 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGE--------------PKKAIHDLKQASKLSQDNTEGHYKISQLLYT----VGDA 239 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHhccccchHHHHHHHHHHHh----hhhH
Confidence 888888889989889999999999998 9999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------HHHhcCcchhHH----------------------
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA------------LQELSAIVPARE---------------------- 272 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~------------~~~~~~~~~~~~---------------------- 272 (365)
+.++ ...+.++++||++-..+-.+-.+ ..+.+++.....
T Consensus 240 ~~sL-------~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 240 ENSL-------KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred HHHH-------HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 8888 55566666666554333221111 111111110000
Q ss_pred ------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 273 ------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 273 ------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
..|.+.+||+.+.++|+++|++..++...+.+|......+.++.++..+.+.+++
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 3355699999999999999999999999999998776665555554444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=134.48 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=163.5
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
...+|....+|...|..+ ...|..++|+..|..|-++.+.+ +.+.+++.-|..+|.+|+.+.|.++-++
T Consensus 339 t~lD~~fgpaWl~fghsf-a~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~ 417 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSF-AGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVL 417 (611)
T ss_pred hhcCccccHHHHHHhHHh-hhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhh
Confidence 467889999999999999 59999999999999999998773 4567999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
+.+|.+.+..+. |.+|+.+|+.++..-+. =...++|||.++.+ ++++++|+
T Consensus 418 ~Elgvvay~~~~--------------y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----l~~~~eAI---- 475 (611)
T KOG1173|consen 418 HELGVVAYTYEE--------------YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----LNKYEEAI---- 475 (611)
T ss_pred hhhhheeehHhh--------------hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH----HhhHHHHH----
Confidence 999999999999 99999999999954222 23569999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
..|+++|.+.|+++.++..+|.+|..+|++ +.|+..|.++|.++|++..+-..|+.+...
T Consensus 476 ---~~~q~aL~l~~k~~~~~asig~iy~llgnl----------d~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 ---DYYQKALLLSPKDASTHASIGYIYHLLGNL----------DKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred ---HHHHHHHHcCCCchhHHHHHHHHHHHhcCh----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 889999999999999999999999999997 999999999999999998888888876654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=134.80 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=153.1
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+...|++.-++++.+.+.+ ..|+|..|+.+|.+++...|. |+...++.+.|+..|.++++++|.++.+
T Consensus 157 l~~sp~Nil~LlGkA~i~y-nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAY-NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred HhhCCcchHHHHHHHHHHh-ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 6788999999999999996 999999999999999999876 5666788999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH--------
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL-------- 232 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~-------- 232 (365)
+..||.+-....+. ..+..+...+.++..+++.||.+.+.|+.-++. .|+|..+..+
T Consensus 236 lv~L~~~~l~~~d~-----------~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDS-----------DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHHHHHccch-----------HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhh
Confidence 99888887765541 237777777777777777777777777766666 6666666544
Q ss_pred ----------------------HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 233 ----------------------WKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 233 ----------------------~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
|++|-++|..+++.++++ .-.++.+|..|.+.|++ +.|+.+|++++.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl----------e~s~~~fEkv~k 370 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL----------EESKFCFEKVLK 370 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH----------HHHHHHHHHHHH
Confidence 233447777777777776 66777777777777775 899999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q 017806 290 LQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 290 ~~p~~~~~~~~lg~~~~~~g 309 (365)
..|++.+...-||.+|...+
T Consensus 371 ~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 371 QLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred hCcchHHHHHHHHhHHHhhh
Confidence 99999998888888888775
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-13 Score=121.34 Aligned_cols=219 Identities=16% Similarity=0.105 Sum_probs=176.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------------------------- 132 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------- 132 (365)
...-|.|++.+..+|.+++ ..|++++|+..|+++..++|.
T Consensus 225 ~~~lr~NvhLl~~lak~~~-~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLY-YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred hccCCccHHHHHHHhhhhh-hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 5677899999999999996 999999999999999999965
Q ss_pred -----hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 133 -----GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD 207 (365)
Q Consensus 133 -----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 207 (365)
..+..+++..|+.+-+++|..+|++..++..-|.++..+++ .++|+-+|+.|+.+.|...+
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------------~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER--------------HTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------------hHHHHHHHHHHHhcchhhHH
Confidence 13455889999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-----------------------------HHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELW-----------------------------KQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~-----------------------------~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
+|-.|-.+|.. .|++.+|..+- ++|-+.++++++++|.+..+.+.++
T Consensus 370 ~Y~GL~hsYLA----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 370 IYRGLFHSYLA----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHHHh----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH
Confidence 99999999999 99999998541 2355666666666666666666666
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHH
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA 338 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 338 (365)
.++...|.. +.+++++++.+...|+ ...+..||.++...+ -+..+..+|.
T Consensus 446 EL~~~Eg~~----------~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~N-------------------e~Q~am~~y~ 495 (564)
T KOG1174|consen 446 ELCQVEGPT----------KDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQN-------------------EPQKAMEYYY 495 (564)
T ss_pred HHHHhhCcc----------chHHHHHHHHHhhccc-cHHHHHHHHHHHHhh-------------------hHHHHHHHHH
Confidence 666666664 6666666666666554 344555666555544 2466788889
Q ss_pred HHHhcCccHHHHHHHHHhhhh
Q 017806 339 AAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 339 ~a~~~~~~~~~~~~al~~~~~ 359 (365)
.|..++|.+....+.+..++.
T Consensus 496 ~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHhcCccchHHHHHHHHHHh
Confidence 999999999888888876653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=112.87 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=113.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
..|++++..+|++..+.+.+|.++...|+ +++|+..|++++.++|.++.+|.++|.++.. .|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~ 65 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR--------------YDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LK 65 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HH
Confidence 46889999999999999999999999999 9999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
++++|+ ..|++++..+|+++..++++|.++...|++ ++|+..|+++++++|++.....
T Consensus 66 ~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 66 EYEEAI-------DAYALAAALDPDDPRPYFHAAECLLALGEP----------ESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHHH-------HHHHHHHhcCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhccccchHHH
Confidence 999999 779999999999999999999999999996 9999999999999999876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=139.21 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=108.8
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYN 163 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (365)
.+|....++..+|.++ ...|++++|+.+|++++..+|. .+...|++++|+..++++++.+|++.. +..
T Consensus 44 ~~~~~a~~~~~lA~~~-~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~ 121 (765)
T PRK10049 44 HMQLPARGYAAVAVAY-RNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLA 121 (765)
T ss_pred hCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHH
Confidence 4777888899999999 5999999999999999999876 345569999999999999999999999 999
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
+|.++...|+ +++|+..|++++++.|++..++..+|.++.. .|..++|++.+
T Consensus 122 la~~l~~~g~--------------~~~Al~~l~~al~~~P~~~~~~~~la~~l~~----~~~~e~Al~~l 173 (765)
T PRK10049 122 LAYVYKRAGR--------------HWDELRAMTQALPRAPQTQQYPTEYVQALRN----NRLSAPALGAI 173 (765)
T ss_pred HHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHH
Confidence 9999999999 9999999999999999999999999999988 88887766443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-15 Score=128.38 Aligned_cols=222 Identities=17% Similarity=0.117 Sum_probs=186.0
Q ss_pred HHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 102 SFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 102 ~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
-..+|.||+ ++|-+.+|...++.++...+. .+.+.++...|+..|.+.++..|.+...+..++.++..++
T Consensus 226 k~Q~gkCyl-rLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYL-RLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHH-HhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 467899995 999999999999999998865 3555588999999999999999999999999999999999
Q ss_pred CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
+ +++|.+.|+.+++.+|.|.++.-..|.-|+. -++.+-|+ .+|++.++..-.+++
T Consensus 305 ~--------------~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~Al-------ryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 305 Q--------------QEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMAL-------RYYRRILQMGAQSPE 359 (478)
T ss_pred h--------------HHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHH-------HHHHHHHHhcCCChH
Confidence 9 9999999999999999999999999999999 99999999 889999999999999
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF--D-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN-- 327 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~-- 327 (365)
.++|+|.|.+.-+++ +-++..|++|+.... + -+.+|+|||.+....|+...+...++.+..-++.
T Consensus 360 Lf~NigLCC~yaqQ~----------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQI----------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHhhHHHHHHhhcch----------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 999999999999996 999999999998754 2 3689999999999999998888777666655544
Q ss_pred hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 328 ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 328 ~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
+.+......-.+-+.++.+.+.+..|--..+.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 33444444444444454444444444433333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=130.05 Aligned_cols=208 Identities=14% Similarity=0.132 Sum_probs=177.3
Q ss_pred hHHHHHHHhh--hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------
Q 017806 82 TMRELLTELK--SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------------- 132 (365)
Q Consensus 82 ~~~~~l~~l~--~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------- 132 (365)
++.+.+..+. ++..|+++..|.+++.+++ ..|++++|....++.+.+++.
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m-~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLM-MLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHH-HHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 4555555544 7888999999999999995 999999999999988888743
Q ss_pred -----------------------------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcccc
Q 017806 133 -----------------------------------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL 177 (365)
Q Consensus 133 -----------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a 177 (365)
|+...+++++|++.--..+++++.+.++++.+|.+++..++
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~---- 218 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN---- 218 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc----
Confidence 22334777888888888888999999999999999999998
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 178 DSTSPSKDALLEEACKKYDEATRLCPTLH------------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 178 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
.+.|+.+|++++.++|++. ..|...|.-.++ .|++..|. ++|..+|.
T Consensus 219 ----------~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~-------E~Yteal~ 277 (486)
T KOG0550|consen 219 ----------ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAY-------ECYTEALN 277 (486)
T ss_pred ----------hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHH-------HHHHHhhc
Confidence 9999999999999999854 357778888888 99999999 88999999
Q ss_pred cCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 246 LNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 246 ~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
++|++ +..|.|+|.+..++|+. .+|+..+..|+.++|....++...|.|+..++++..+..++..+
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl----------~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRL----------REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCc----------hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 56799999999999998 99999999999999999999999999999999998888776655
Q ss_pred CCCC
Q 017806 322 REVS 325 (365)
Q Consensus 322 ~~~~ 325 (365)
....
T Consensus 348 ~q~~ 351 (486)
T KOG0550|consen 348 MQLE 351 (486)
T ss_pred Hhhc
Confidence 5443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-14 Score=128.69 Aligned_cols=172 Identities=22% Similarity=0.159 Sum_probs=158.0
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccC--hhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccC
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
++..+|..+ ...++++.|+.+|.+++.-. |+........++++.......-++|.-..-...-|+.++..|+
T Consensus 300 ~~~r~g~a~-~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd----- 373 (539)
T KOG0548|consen 300 ALARLGNAY-TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD----- 373 (539)
T ss_pred HHHHhhhhh-hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC-----
Confidence 345578888 48899999999999998765 4466667889999999999999999988888999999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
|..|+.+|.++|..+|+++.+|.|+|.+|.. +|.+..|+ +...++++++|++..+|.+.|
T Consensus 374 ---------y~~Av~~YteAIkr~P~Da~lYsNRAac~~k----L~~~~~aL-------~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 374 ---------YPEAVKHYTEAIKRDPEDARLYSNRAACYLK----LGEYPEAL-------KDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred ---------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHhcCchHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 789999999999999999999
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
.++..+.++ +.|++.|+++++.+|++.++...+..|+..+
T Consensus 434 ~al~~mk~y----------dkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 434 AALRAMKEY----------DKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999995 9999999999999999999999999999864
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-14 Score=122.91 Aligned_cols=171 Identities=16% Similarity=0.050 Sum_probs=140.6
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCHH-
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDYD- 159 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~- 159 (365)
.++..+..++.+|..++ ..|+++.|+..|++++...|. ++...|++++|+..|+++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEAL-DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred cccCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34567788999999995 999999999999999998764 345569999999999999999998776
Q ss_pred --HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHH
Q 017806 160 --ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YNWAIAISDRA 220 (365)
Q Consensus 160 --~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~ 220 (365)
+++.+|.++..... ......|++++|+..|++++..+|++..++ ..+|.++..
T Consensus 107 ~~a~~~~g~~~~~~~~------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~-- 178 (235)
T TIGR03302 107 DYAYYLRGLSNYNQID------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK-- 178 (235)
T ss_pred HHHHHHHHHHHHHhcc------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 79999999988611 122233459999999999999999986543 356777778
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
.|++.+|+ ..|++++...|+ .+.+++++|.++..+|++ ++|+.+++......|
T Consensus 179 --~g~~~~A~-------~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~----------~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 179 --RGAYVAAI-------NRFETVVENYPDTPATEEALARLVEAYLKLGLK----------DLAQDAAAVLGANYP 234 (235)
T ss_pred --cCChHHHH-------HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCC
Confidence 89999999 678888887665 468999999999999996 999998888766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=136.96 Aligned_cols=225 Identities=16% Similarity=0.103 Sum_probs=106.8
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
.|+++..|..+|.+. ...++++.|+..|++.+..++. .+...+++++|+.++.++.+.++ ++..+....
T Consensus 40 ~~~~~~~~~~~a~La-~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l 117 (280)
T PF13429_consen 40 PPDDPEYWRLLADLA-WSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDG-DPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccchhhHHH
Confidence 578889999999999 5999999999999999998865 23456999999999999988764 567777888
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
.++...++ ++++...++++.... +.++..|..+|.++.. .|++++|+ ..|+++
T Consensus 118 ~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~-------~~~~~a 172 (280)
T PF13429_consen 118 QLYYRLGD--------------YDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKAL-------RDYRKA 172 (280)
T ss_dssp H-HHHTT---------------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHHH-------HHHHHH
T ss_pred HHHHHHhH--------------HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHH
Confidence 88999999 999999999988765 6789999999999999 99999999 889999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 244 l~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
++.+|++..++..++.++...|+. +++...+.......|+++..+..+|.++..+|+..++...+..+..
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999999999999999999986 8888888888888888899999999999999988766555544444
Q ss_pred CCcch--HHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 324 VSPNE--LYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 324 ~~~~~--~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
.+|.+ .....+..+...+..+.+...+.++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 34432 2233344444444444444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=123.65 Aligned_cols=118 Identities=31% Similarity=0.315 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
-+..-|+-+...++ |.+|+..|.+||+++|.++-.|.+++.+|.+ +|.++.|+ +.
T Consensus 83 ~LK~eGN~~m~~~~--------------Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AV-------kD 137 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKD--------------YQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAV-------KD 137 (304)
T ss_pred HHHHHHHHHHHhhh--------------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHH-------HH
Confidence 35556666666677 9999999999999999999999999999999 99999999 88
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
++.+|.+||.+..+|..||.+|..+|++ ++|++.|++||+++|++...+.+|.++-.++++..
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~gk~----------~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLALGKY----------EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHccCcH----------HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999996 99999999999999999999999999999888655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=124.61 Aligned_cols=112 Identities=23% Similarity=0.285 Sum_probs=106.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
++..+..++|.+|+..|.+||+++|.++..|-+++.+|.++|. |+.|++.++.+|.+||....+|.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------------~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------------YEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------------hHHHHHHHHHHHhcChHHHHHHH
Confidence 3345677999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.||.+|.. +|++++|+ ..|+++|+++|++..++.+|..+-..+++.
T Consensus 154 RLG~A~~~----~gk~~~A~-------~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 154 RLGLAYLA----LGKYEEAI-------EAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHc----cCcHHHHH-------HHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999 99999999 779999999999999999999999999986
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-14 Score=136.28 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=153.1
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---hhhhh-------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---GRSRQ-------RILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
....|+++.++ +..++++.|...|..++...|. ++.+. +++.+|...++.++..+..++.+|..+|.++
T Consensus 496 lt~~YNlarl~-E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLL-EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 34578999999 7999999999999999999987 33332 6788999999999999999999999999888
Q ss_pred HHhcCcccc----------------------CC------------CCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 169 QESADNVSL----------------------DS------------TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 169 ~~~~~~~~a----------------------~~------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
.....+..+ .| ..-...+.+++|++.|.++|..+|.|.-+-+.+|.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI 654 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh
Confidence 876665444 01 11113478999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--C
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--F 292 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p 292 (365)
++.. .|++.+|. ..|.++.+.--++.++|.|+|.||..+|++ ..|++.|+.++... .
T Consensus 655 VLA~----kg~~~~A~-------dIFsqVrEa~~~~~dv~lNlah~~~e~~qy----------~~AIqmYe~~lkkf~~~ 713 (1018)
T KOG2002|consen 655 VLAE----KGRFSEAR-------DIFSQVREATSDFEDVWLNLAHCYVEQGQY----------RLAIQMYENCLKKFYKK 713 (1018)
T ss_pred hhhh----ccCchHHH-------HHHHHHHHHHhhCCceeeeHHHHHHHHHHH----------HHHHHHHHHHHHHhccc
Confidence 9999 99999999 556666665556788888888888888886 55555555555432 2
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
++..++..||.+++..|+..++......+....|.
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 34555555555555555555444444444444333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=137.48 Aligned_cols=137 Identities=11% Similarity=-0.003 Sum_probs=101.0
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 152 ~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
...|.+++++++||.+....|+ +++|...++.++++.|++..++.+++.++.+ .+++++|+
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~--------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~~~~eeA~- 140 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHR--------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----QQGIEAGR- 140 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hccHHHHH-
Confidence 3456777777777777777777 7777777777777777777777777777777 77777777
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
..+++++..+|+++.+++.+|.++.++|++ ++|+.+|++++..+|+++.++.++|.++...|+.
T Consensus 141 ------~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~----------~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 141 ------AEIELYFSGGSSSAREILLEAKSWDEIGQS----------EQADACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred ------HHHHHHhhcCCCCHHHHHHHHHHHHHhcch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 667777777777777777777777777775 7777777777777777777777777777777777
Q ss_pred hhhhcCcCCCCC
Q 017806 312 TLRTGGTVNPRE 323 (365)
Q Consensus 312 ~~a~~~~~~~~~ 323 (365)
..+...+..+++
T Consensus 205 ~~A~~~~~~a~~ 216 (694)
T PRK15179 205 WRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHHH
Confidence 666555544443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-13 Score=119.78 Aligned_cols=187 Identities=12% Similarity=0.007 Sum_probs=145.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+.-++.++.+.|++.+ ..|++++|.+.|+.++..+..| ...+|++++|+++|-+.-.+--++..++
T Consensus 483 ln~dryn~~a~~nkgn~~f-~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAF-ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred hcccccCHHHhhcCCceee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 5667778899999999996 9999999999999999998774 3456999999999999888888899999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+.++.+|..+.+ ..+||++|-++..+-|+++.++..||.+|-+ .|+-.+|.++ +-
T Consensus 562 ~qianiye~led--------------~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~-------~y 616 (840)
T KOG2003|consen 562 VQIANIYELLED--------------PAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQC-------HY 616 (840)
T ss_pred HHHHHHHHHhhC--------------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhh-------hh
Confidence 999999999999 9999999999999999999999999999999 9999999844 44
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
......|.+.++.-.||..|....-. ++|+.+|++|--+.|+...-...++.|+.+.|+..++
T Consensus 617 dsyryfp~nie~iewl~ayyidtqf~----------ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 617 DSYRYFPCNIETIEWLAAYYIDTQFS----------EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hcccccCcchHHHHHHHHHHHhhHHH----------HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 44445555555555555555554443 5555555555555555544444455555555544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=120.47 Aligned_cols=147 Identities=22% Similarity=0.165 Sum_probs=125.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH---
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--- 207 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 207 (365)
++..|++++|+..|++++..+|.++ .+++.+|.++...|+ +++|+..|+++++..|+++.
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------------YAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCchHH
Confidence 4567899999999999999999876 688999999999999 99999999999999998765
Q ss_pred HHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMR--------GRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQ 262 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~--------g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~ 262 (365)
+++.+|.++.. . |++++|+ +.|++++..+|++..++ ..+|.++.
T Consensus 109 a~~~~g~~~~~----~~~~~~~~~~~~~~A~-------~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 177 (235)
T TIGR03302 109 AYYLRGLSNYN----QIDRVDRDQTAAREAF-------EAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYL 177 (235)
T ss_pred HHHHHHHHHHH----hcccccCCHHHHHHHH-------HHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999987 5 5566666 88999999999986543 35567777
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhhhhhhh
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~a~ 315 (365)
..|++ .+|+..|++++...|+. +.+++++|.++..+|+..++.
T Consensus 178 ~~g~~----------~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 178 KRGAY----------VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HcCCh----------HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 77775 99999999999997764 689999999999999775443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-13 Score=137.09 Aligned_cols=186 Identities=11% Similarity=-0.041 Sum_probs=161.5
Q ss_pred hhhcHHHHHHHHHHhhccC---hh--------hhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCccc
Q 017806 112 LAEQNNAAMELINSVTGVD---EE--------GRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVS 176 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~---~~--------~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~ 176 (365)
..|++++|+..|++++... |. .+...|++++|+.+|++++..+|.+ ...+..++.++...|+
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~--- 325 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN--- 325 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc---
Confidence 6799999999999999875 32 3566799999999999999998876 4567888888999999
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 177 LDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 177 a~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+++|+..++++....|. ...++..+|.++.. .|++++|+ ..++
T Consensus 326 -----------~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~-------~~l~ 383 (765)
T PRK10049 326 -----------YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAE-------MRAR 383 (765)
T ss_pred -----------HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 99999999999998773 24577899999999 99999999 7799
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~ 321 (365)
+++...|++..+++.+|.++...|++ ++|++.+++++.++|++..+++.+|.++..+|+.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~----------~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~---------- 443 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWP----------RAAENELKKAEVLEPRNINLEVEQAWTALDLQEW---------- 443 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH----------
Confidence 99999999999999999999999996 9999999999999999999999999999999865
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCccHHHHH
Q 017806 322 REVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
..+...+..+....|++....
T Consensus 444 ---------~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 444 ---------RQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred ---------HHHHHHHHHHHHhCCCCHHHH
Confidence 455556677777777766544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-14 Score=132.56 Aligned_cols=193 Identities=15% Similarity=0.134 Sum_probs=163.1
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhcc--------Chh----------hhhhhhhHHHHHHHHHHHHHh-
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGV--------DEE----------GRSRQRILTFAAKRYANAIER- 153 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~--------~~~----------~~~~~~~~~~A~~~~~~al~~- 153 (365)
...|.-..+...++..| ...|+++.|+.+|++++.. .+. .+..++++.+|+..|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y-~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMY-AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred cCCchHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45677777888899999 5999999999999999998 222 355569999999999999985
Q ss_pred -------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Q 017806 154 -------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISD 218 (365)
Q Consensus 154 -------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~ 218 (365)
+|..+.++.+||.+|...|+ |++|..++++|++|. |.-+..+.+++.++..
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GK--------------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGK--------------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCC--------------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 35567789999999999999 999999999999873 3345678999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC------
Q 017806 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ------ 291 (365)
Q Consensus 219 ~~~~~g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------ 291 (365)
++++++|+.+++++++.+.+++..+- .-+.++.+||.+|..+|++ ++|...|++||.+.
T Consensus 338 ----~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~----------~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 338 ----MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY----------KEAEELYKKAIQILRELLGK 403 (508)
T ss_pred ----hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999998887664 7789999999999999996 99999999999874
Q ss_pred --CCCHHHHHHHHHHHHHhhhhhhh
Q 017806 292 --FDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 292 --p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
+.....+++||..+..++...++
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchH
Confidence 33356788888888877765544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-13 Score=133.45 Aligned_cols=149 Identities=10% Similarity=0.035 Sum_probs=133.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
....|.++++++++|.+. ...|.+++|...++.++++.|++..++.+++.++.++
T Consensus 79 ~~~~~~~~~~~~~La~i~-------------------------~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~ 133 (694)
T PRK15179 79 VRRYPHTELFQVLVARAL-------------------------EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ 133 (694)
T ss_pred HHhccccHHHHHHHHHHH-------------------------HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Confidence 345677788888887777 3446678888888999999999999999999999999
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
++ +++|...+++++..+|+++.+++.+|.++.. +|++++|+ ..|++++..+|+++
T Consensus 134 ~~--------------~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~----~g~~~~A~-------~~y~~~~~~~p~~~ 188 (694)
T PRK15179 134 QG--------------IEAGRAEIELYFSGGSSSAREILLEAKSWDE----IGQSEQAD-------ACFERLSRQHPEFE 188 (694)
T ss_pred cc--------------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hcchHHHH-------HHHHHHHhcCCCcH
Confidence 99 9999999999999999999999999999999 99999999 77999999999999
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
.+|.++|.++...|+. ++|...|++|+....+-...+.+
T Consensus 189 ~~~~~~a~~l~~~G~~----------~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 189 NGYVGWAQSLTRRGAL----------WRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhCcchHHHHH
Confidence 9999999999999997 99999999999997766665444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-13 Score=113.24 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL-QELSA 266 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~ 266 (365)
.++++..++++++.+|++...|..||.++.. .|++++|+ ..|+++++++|+++.++.++|.++ ...|+
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~-------~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNAL-------LAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999 99999999 889999999999999999999985 66676
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
. ++++|+..++++++++|++..+++++|.+++..|+..++..
T Consensus 124 ~--------~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 124 H--------MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred C--------CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 1 12899999999999999999999999999999997654333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-12 Score=122.94 Aligned_cols=229 Identities=12% Similarity=-0.017 Sum_probs=140.6
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
..|+++.|.+.+.++....|. ....+|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~------- 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE------- 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC-------
Confidence 445555555555555544433 11222555555555555555555443 233334555555555
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA------------------------ 236 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A------------------------ 236 (365)
++.|...+++.++..|+++.++..++.++.. .|++++|++.+.+.
T Consensus 169 -------~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 169 -------LHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555 55555444432220
Q ss_pred -------HHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCcchhHH--------------------------hhhHHHH
Q 017806 237 -------TKNYEKAVQLNW----NSPQALNNWGLALQELSAIVPARE--------------------------KQTIVRT 279 (365)
Q Consensus 237 -------~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~~~~--------------------------~~~~~~~ 279 (365)
+..+.++....| +++..+..+|..+...|+++.|.. ..++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 123444444455 467777777777777777765554 2255688
Q ss_pred HHHHHHHHHHhCCCCH--HHHHHHHHHHHHhhhhhhhhcCcC--CCCCCCcch-HHHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 280 AISKFRAAIQLQFDFH--RAIYNLGTVLYGLAEDTLRTGGTV--NPREVSPNE-LYSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 280 A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~a~~~~~--~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
+++.++++++.+|+++ ..+..+|++++..|++.++...+. .+....|.. .+......+.+.+..+.+...|.+++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999 889999999999999998888777 454455543 45677777777777777778888877
Q ss_pred Hhhh
Q 017806 355 RLVR 358 (365)
Q Consensus 355 ~~~~ 358 (365)
..+-
T Consensus 398 ~~~~ 401 (409)
T TIGR00540 398 GLML 401 (409)
T ss_pred HHHh
Confidence 6553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-12 Score=126.22 Aligned_cols=200 Identities=15% Similarity=0.160 Sum_probs=156.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.++.+|+.+|.+| ++.|+.+++....-.|..++|.. ...+|++.+|+-||.+||+.+|.+....
T Consensus 166 Ikqdp~~~~ay~tL~~Iy-EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~ 244 (895)
T KOG2076|consen 166 IKQDPRNPIAYYTLGEIY-EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI 244 (895)
T ss_pred HHhCccchhhHHHHHHHH-HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH
Confidence 688999999999999999 79999999999999999999873 1234889999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHhcCCHHHHHHHH---
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFYNWAIAISDRAKMRGRTKEAEELW--- 233 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~g~~~~A~~~~--- 233 (365)
+..+.+|.++|+ +..|...|.+++.++|.. .+.....+..+.. .++-+.|++.+
T Consensus 245 ~ers~L~~~~G~--------------~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~----~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 245 YERSSLYQKTGD--------------LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT----HNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHHhCh--------------HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHH
Confidence 999999999999 999999999999999821 1111122222222 22223333221
Q ss_pred --------------------------------------------------------------------------------
Q 017806 234 -------------------------------------------------------------------------------- 233 (365)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (365)
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence
Q ss_pred --------------------------------------------HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcc
Q 017806 234 --------------------------------------------KQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 234 --------------------------------------------~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~ 268 (365)
..|+..|...+...+ ++..+|+.+|.||..+|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~- 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY- 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH-
Confidence 114555555444433 2467888888888888885
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
++|+.+|+++|.++|++..+...|+.++..+|+.+++......
T Consensus 466 ---------e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 466 ---------EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred ---------HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999988765544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=121.61 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=145.4
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHH--------
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYD-------- 159 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~-------- 159 (365)
-..+-...+.++. ..|++++|+..--..+.+++. +++..++.+.|+.+|+++|.++|++..
T Consensus 168 c~~a~~lka~cl~-~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 168 CFKAKLLKAECLA-FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hhHHHHhhhhhhh-hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 3445566667774 889999998888888888765 566678899999999999999988754
Q ss_pred ----HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 160 ----ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 160 ----~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.|...|+-.+..|+ |..|.++|..+|.++|++ +.+|.+++.+... +|+..+|+
T Consensus 247 k~le~~k~~gN~~fk~G~--------------y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r----Lgrl~eai- 307 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGN--------------YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR----LGRLREAI- 307 (486)
T ss_pred HHHHHHHhhhhhHhhccc--------------hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc----cCCchhhh-
Confidence 35555666666666 999999999999999984 6789999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
..+..++.+|+.+..++...|.|+..++++ ++|++.|+++++...+ ......|..+-..+.+
T Consensus 308 ------sdc~~Al~iD~syikall~ra~c~l~le~~----------e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 308 ------SDCNEALKIDSSYIKALLRRANCHLALEKW----------EEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred ------hhhhhhhhcCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 779999999999999999999999999996 9999999999999876 6666666666555553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=115.39 Aligned_cols=204 Identities=15% Similarity=0.139 Sum_probs=171.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
...+|.+++-++-+|.-++ ..|++..|+..|-.|+..+|.. +...|.-.-|+..+.++|++.|+...+.
T Consensus 31 ~~~~~advekhlElGk~ll-a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELL-ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred hcCCHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 4566778888999999995 9999999999999999999983 4455888899999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------HHHhcCCHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISD--------RAKMRGRTKEAE 230 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~--------~~~~~g~~~~A~ 230 (365)
..+|.++..+|. +++|+..|++.|.-+|++ .++...|+.+-.. .+.-.|++..++
T Consensus 110 iQRg~vllK~Ge--------------le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 110 IQRGVVLLKQGE--------------LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred HHhchhhhhccc--------------HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 999999999999 999999999999999954 3444444443322 011245555555
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 231 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
......+++.|=++..+..++.||...|+. ..||..++.+-.+..++.+.++.++.+++..|+
T Consensus 176 -------~~i~~llEi~~Wda~l~~~Rakc~i~~~e~----------k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 176 -------EMITHLLEIQPWDASLRQARAKCYIAEGEP----------KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred -------HHHHHHHhcCcchhHHHHHHHHHHHhcCcH----------HHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 789999999999999999999999999997 999999999999999999999999999999998
Q ss_pred hhhhhcCcCCCCCCCcc
Q 017806 311 DTLRTGGTVNPREVSPN 327 (365)
Q Consensus 311 ~~~a~~~~~~~~~~~~~ 327 (365)
....+...+.+..++|.
T Consensus 239 ~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHHHHHHHHccCcc
Confidence 87666655555556655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-12 Score=112.05 Aligned_cols=196 Identities=12% Similarity=0.075 Sum_probs=163.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHhCCCC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIERNPED 157 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~~p~~ 157 (365)
+..+|...++++.+|+.+ .+.|..|.||...+..+..... .++..|-++.|...|........--
T Consensus 62 l~~d~~t~e~~ltLGnLf-RsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa 140 (389)
T COG2956 62 LQEDPETFEAHLTLGNLF-RSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA 140 (389)
T ss_pred HhcCchhhHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh
Confidence 467889999999999999 5999999999999877665422 4666799999999999998876666
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
..++..|-.+|....+ |++||+.-++..++.+.. +..+..|+..+.. ..+++.|+
T Consensus 141 ~~AlqqLl~IYQ~tre--------------W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d~A~-- 200 (389)
T COG2956 141 EGALQQLLNIYQATRE--------------WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVDRAR-- 200 (389)
T ss_pred HHHHHHHHHHHHHhhH--------------HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHHHHH--
Confidence 7899999999999999 999999999999998874 3345555555555 55666665
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~ 311 (365)
..+.+|++.||+...+-..+|.+....|++ +.|++.++.+++.||.+ +++...|..||..+|+.
T Consensus 201 -----~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 201 -----ELLKKALQADKKCVRASIILGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred -----HHHHHHHhhCccceehhhhhhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 889999999999999999999999999996 99999999999999988 57888999999999987
Q ss_pred hhhhcCcCCCCC
Q 017806 312 TLRTGGTVNPRE 323 (365)
Q Consensus 312 ~~a~~~~~~~~~ 323 (365)
.......+.+.+
T Consensus 266 ~~~~~fL~~~~~ 277 (389)
T COG2956 266 AEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHHH
Confidence 765544433333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=124.38 Aligned_cols=195 Identities=12% Similarity=-0.005 Sum_probs=142.8
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+|+.+.++..+|.++ ...|+.+.+...+.++....+. .....|++++|+..++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLL-LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 678888888888888 4788888888888877766553 23445888888888888888888888777
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
.. +..+...|+.... ...+...+......+|....++..+|.++.. .|++++|+ ..++
T Consensus 81 ~~-~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~-------~~~~ 138 (355)
T cd05804 81 KL-HLGAFGLGDFSGM----------RDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAE-------EAAR 138 (355)
T ss_pred HH-hHHHHHhcccccC----------chhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 76 6666666651111 4444444444445566677777788888888 88888888 6788
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhhhhhhhcC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH----RAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
++++++|+++.++..+|.++...|++ ++|+.++++++...|.++ ..+..++.++...|+...+...
T Consensus 139 ~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 139 RALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888888888888888886 888888888888776432 3456788888888887776655
Q ss_pred cCCCC
Q 017806 318 TVNPR 322 (365)
Q Consensus 318 ~~~~~ 322 (365)
+....
T Consensus 209 ~~~~~ 213 (355)
T cd05804 209 YDTHI 213 (355)
T ss_pred HHHHh
Confidence 54433
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=109.65 Aligned_cols=147 Identities=21% Similarity=0.157 Sum_probs=135.2
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..|+-+.+..+..+++..+|.+...+..+|...+..|+ |.+|+..++++..+.|++..+|+.+|.+
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--------------~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--------------FGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--------------hHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 34555667777777778889999999889999999999 9999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
|.+ .|++++|. ..|.+++++.|+.+.+.+|+|..|.-.|++ +.|..++..+....+.+.
T Consensus 144 ldq----~Gr~~~Ar-------~ay~qAl~L~~~~p~~~nNlgms~~L~gd~----------~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 144 LDQ----LGRFDEAR-------RAYRQALELAPNEPSIANNLGMSLLLRGDL----------EDAETLLLPAYLSPAADS 202 (257)
T ss_pred HHH----ccChhHHH-------HHHHHHHHhccCCchhhhhHHHHHHHcCCH----------HHHHHHHHHHHhCCCCch
Confidence 999 99999999 889999999999999999999999999997 999999999999989899
Q ss_pred HHHHHHHHHHHHhhhhhhhhcC
Q 017806 296 RAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 296 ~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
.+..||+.+....|+...+...
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhh
Confidence 9999999999999988777654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=104.26 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=100.6
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHH
Q 017806 150 AIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE 228 (365)
Q Consensus 150 al~~~-p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~ 228 (365)
...+. ++.-+..+.+|..+...|+ +++|+..|+-+..++|.+...|++||.++.. +|+|.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~--------------l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~ 87 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKE--------------FAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGE 87 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHH
Confidence 34456 6777889999999999999 9999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 229 A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
|+ ..|.+++.++|+++..++++|.|+...|+. +.|++.|+.|+...
T Consensus 88 AI-------~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~----------~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 88 AI-------YAYGRAAQIKIDAPQAPWAAAECYLACDNV----------CYAIKALKAVVRIC 133 (157)
T ss_pred HH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHh
Confidence 99 889999999999999999999999999997 99999999999885
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=104.26 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=114.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH
Q 017806 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 272 (365)
Q Consensus 193 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~ 272 (365)
+.|++++.++|++....+.+|.++.. .|++++|+ ..+++++..+|+++.+|.++|.++..+|++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----- 67 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEAL-------KLFQLLAAYDPYNSRYWLGLAACCQMLKEY----- 67 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----
Confidence 57899999999999999999999999 99999999 779999999999999999999999999996
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 273 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
++|+..|++++..+|+++..++++|.++...|+. ..+..+|..+..++|+...+..
T Consensus 68 -----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-------------------~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 68 -----EEAIDAYALAAALDPDDPRPYFHAAECLLALGEP-------------------ESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred -----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH-------------------HHHHHHHHHHHHhccccchHHH
Confidence 9999999999999999999999999999999865 4566677888888888877666
Q ss_pred HHHhhhhh
Q 017806 353 ALRLVRSM 360 (365)
Q Consensus 353 al~~~~~~ 360 (365)
..+.+..+
T Consensus 124 ~~~~~~~~ 131 (135)
T TIGR02552 124 LKERAEAM 131 (135)
T ss_pred HHHHHHHH
Confidence 55555444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=120.83 Aligned_cols=240 Identities=12% Similarity=-0.009 Sum_probs=175.4
Q ss_pred HHhcCCChhHhhhcHHHHHHHHHHhhccC--hh--------hhhhhhhHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 017806 102 SFSQGNTPHQLAEQNNAAMELINSVTGVD--EE--------GRSRQRILTFAAKRYANAIERNPEDYDA-LYNWALVLQE 170 (365)
Q Consensus 102 ~~~~g~~~~~~~g~~~~A~~~~~~al~~~--~~--------~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~ 170 (365)
.+..|.+.+ ..|+++.|.+...++.... |. .-...|+++.|..+|.++.+.+|+...+ ....+.++..
T Consensus 87 ~~~~gl~a~-~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKL-AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 445565553 6677777777777665543 22 1134477777888888877777776433 3344777777
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT------------- 237 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~------------- 237 (365)
.|+ +++|+..++++++.+|+++.++..++.+|.. .|+|++|+..+.+..
T Consensus 166 ~g~--------------~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l 227 (398)
T PRK10747 166 RNE--------------NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAML 227 (398)
T ss_pred CCC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 777 7788888888888888887777777777777 777777775544321
Q ss_pred ------------------HHHHHHH----hcCCCCHHHHHHHHHHHHHhcCcchhHH---------------------hh
Q 017806 238 ------------------KNYEKAV----QLNWNSPQALNNWGLALQELSAIVPARE---------------------KQ 274 (365)
Q Consensus 238 ------------------~~~~~al----~~~p~~~~~~~~lg~~~~~~~~~~~~~~---------------------~~ 274 (365)
..+.+.. +..|+++.++..++..+...|+.+.|.. ..
T Consensus 228 ~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~ 307 (398)
T PRK10747 228 EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKT 307 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccC
Confidence 1111111 2346688899999999999999877766 44
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch-HHHHHHHHHHHHHhcCccHHHHHHH
Q 017806 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE-LYSQSAIYIAAAHALKPSYSVYSSA 353 (365)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~a 353 (365)
++++++++.+++.++.+|+++..+..+|.++...+++.++...+..+....|.. .+......+.+.++.+.+...|.++
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999988888887777775 3466666767777777788888888
Q ss_pred HHhhhhh
Q 017806 354 LRLVRSM 360 (365)
Q Consensus 354 l~~~~~~ 360 (365)
+.++.+-
T Consensus 388 l~~~~~~ 394 (398)
T PRK10747 388 LMLTLQN 394 (398)
T ss_pred Hhhhccc
Confidence 8776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=125.51 Aligned_cols=217 Identities=19% Similarity=0.132 Sum_probs=169.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
...+|+++.+.|.++.-| ...++...|+++.++++.+++. ....++++..|+.....+++-.|+|...
T Consensus 471 v~~d~~dp~~if~lalq~-A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQY-AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HhcCCCCchHHHHHHHHH-HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 678999999999999999 5999999999999999999654 3455688999999999888877773221
Q ss_pred HHHHHHHHHHhcCcccc---------------------------------------------------------------
Q 017806 161 LYNWALVLQESADNVSL--------------------------------------------------------------- 177 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a--------------------------------------------------------------- 177 (365)
......+-...++...+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 11111110000000000
Q ss_pred --------------------------CCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 178 --------------------------DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 178 --------------------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.+......+..+++..|+.++-.++|..+..|+..|.++.. .|.+.+|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~- 704 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAK- 704 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHH-
Confidence 00001122567888889999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS--KFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
..|..|+.+||+++.+...+|.++.+.|+. .-|.. .+..+++++|.++++|+.||.++..+|
T Consensus 705 ------~af~~Al~ldP~hv~s~~Ala~~lle~G~~----------~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 705 ------EAFLVALALDPDHVPSMTALAELLLELGSP----------RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred ------HHHHHHHhcCCCCcHHHHHHHHHHHHhCCc----------chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 789999999999999999999999999986 65665 999999999999999999999999999
Q ss_pred hhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHH
Q 017806 310 EDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 349 (365)
+.. ++...|..+.++++..++
T Consensus 769 d~~-------------------~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 769 DSK-------------------QAAECFQAALQLEESNPV 789 (799)
T ss_pred chH-------------------HHHHHHHHHHhhccCCCc
Confidence 664 566677777777776654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-11 Score=101.48 Aligned_cols=165 Identities=16% Similarity=0.061 Sum_probs=137.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..|+.+-|..|+++.....|++..+-..-|..+...|+ +++|+++|+..++-+|.+.-++...-.+
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~--------------~~~A~e~y~~lL~ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN--------------YKEAIEYYESLLEDDPTDTVIRKRKLAI 129 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc--------------hhhHHHHHHHHhccCcchhHHHHHHHHH
Confidence 34778889999999888889999988888999999998 9999999999999999988888877777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
... +|+.-+|| +.+..-++..+++.++|..++.+|...|++ ++|.=||++.+-++|.++
T Consensus 130 lka----~GK~l~aI-------k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 130 LKA----QGKNLEAI-------KELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHH----cCCcHHHH-------HHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCcH
Confidence 777 88888888 778888888899999999999999999885 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHH
Q 017806 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 296 ~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
..+..+|.+++..|..+ .+..++.||+++..+.|.+.+..
T Consensus 189 l~f~rlae~~Yt~gg~e----------------N~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQGGAE----------------NLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHHHHHhhHH----------------HHHHHHHHHHHHHHhChHhHHHH
Confidence 99999999999888432 34557777777777777544433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=116.39 Aligned_cols=213 Identities=16% Similarity=0.133 Sum_probs=153.1
Q ss_pred HhcCCChhHhhhcHHHHHHHHHHhhccChh-----------hhhhh--hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 103 FSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQ--RILTFAAKRYANAIERNPEDYDALYNWALVLQ 169 (365)
Q Consensus 103 ~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 169 (365)
.+.+..++ ..|+++.|++.+.-.-..+.. .++.+ .++..|.++...++.++..++.++.+.|++.+
T Consensus 423 i~ka~~~l-k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELL-KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHH-hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 34444553 788888888887654444422 12332 47888888888888888888888888888888
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
..|+ +++|.+.|++++.-+.....+++++|..+.. +|+.++|+ .+|-+.-.+--+
T Consensus 502 ~ngd--------------~dka~~~ykeal~ndasc~ealfniglt~e~----~~~ldeal-------d~f~klh~il~n 556 (840)
T KOG2003|consen 502 ANGD--------------LDKAAEFYKEALNNDASCTEALFNIGLTAEA----LGNLDEAL-------DCFLKLHAILLN 556 (840)
T ss_pred ecCc--------------HHHHHHHHHHHHcCchHHHHHHHHhcccHHH----hcCHHHHH-------HHHHHHHHHHHh
Confidence 8888 8888888888888888888888888888888 88888888 556665555566
Q ss_pred CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--
Q 017806 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN-- 327 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~-- 327 (365)
++++++.++.+|.-+.+. .+|+++|.++..+-|+++.++..||.+|-+.|+...+-.++-....+-|.
T Consensus 557 n~evl~qianiye~led~----------aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni 626 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDP----------AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI 626 (840)
T ss_pred hHHHHHHHHHHHHHhhCH----------HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence 778888888888888876 78888888888888888888888888888777766654433222222221
Q ss_pred -------------hHHHHHHHHHHHHHhcCccHHHHH
Q 017806 328 -------------ELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 328 -------------~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
..+..+..||+++.-+.|...-|.
T Consensus 627 e~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 124677788888888888765444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-12 Score=128.55 Aligned_cols=186 Identities=10% Similarity=-0.015 Sum_probs=157.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
.-..|..+...+..+.+.. +.|+++.|++.|++++..+|.. +...|++++|+.++++++.-.|.....+
T Consensus 27 ~~~~p~~~~~~y~~aii~~-r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRA-RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred cccCccchhHHHHHHHHHH-hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 4567889999999999995 9999999999999999999873 1345999999999999994444555555
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++..+|+ +++|++.|+++++++|+++.++..++.++.. .++.++|+ ..++
T Consensus 106 lalA~ly~~~gd--------------yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl-------~~l~ 160 (822)
T PRK14574 106 ASAARAYRNEKR--------------WDQALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVL-------KQAT 160 (822)
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHH-------HHHH
Confidence 556889999999 9999999999999999999999999999999 99999999 7799
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
+++..+|.+... ..++.++...++. .+|+..|+++++.+|++..++..+..++...|-...+
T Consensus 161 ~l~~~dp~~~~~-l~layL~~~~~~~----------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a 222 (822)
T PRK14574 161 ELAERDPTVQNY-MTLSYLNRATDRN----------YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPA 222 (822)
T ss_pred HhcccCcchHHH-HHHHHHHHhcchH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 999999985544 4445555445553 6799999999999999999999999999999855443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=119.12 Aligned_cols=115 Identities=23% Similarity=0.131 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+...|..++..|+ |++|+.+|+++++++|+++.+|+++|.++.. +|++++|+ ..+
T Consensus 5 l~~~a~~a~~~~~--------------~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl-------~~~ 59 (356)
T PLN03088 5 LEDKAKEAFVDDD--------------FALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAV-------ADA 59 (356)
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence 4567888888888 9999999999999999999999999999999 99999999 789
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
++++.++|+++.+|+++|.+|..+|++ ++|+..|++++.++|++..+...++.|...+..
T Consensus 60 ~~Al~l~P~~~~a~~~lg~~~~~lg~~----------~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 60 NKAIELDPSLAKAYLRKGTACMKLEEY----------QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999996 999999999999999999999999999877754
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=105.27 Aligned_cols=165 Identities=22% Similarity=0.158 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 218 (365)
+...+...+-+....+|++..+ .+++..+...|+ -+.+..+..++..-+|.+......+|.....
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~--------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~ 112 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGD--------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIR 112 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhccc--------------ccchHHHHhhhhccCcccHHHHHHHHHHHHH
Confidence 3555778888888999999999 999999999999 8999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (365)
Q Consensus 219 ~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (365)
.|+|.+|+ ..++++..++|+++.+|+.+|.+|.+.|++ ++|...|.+++++.|+++.+.
T Consensus 113 ----~g~~~~A~-------~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 113 ----NGNFGEAV-------SVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred ----hcchHHHH-------HHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhh
Confidence 99999999 889999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhh
Q 017806 299 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (365)
Q Consensus 299 ~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~ 358 (365)
.|||..+.-.|+.. .+..++..+...-+++......+.++.
T Consensus 172 nNlgms~~L~gd~~-------------------~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 172 NNLGMSLLLRGDLE-------------------DAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred hhHHHHHHHcCCHH-------------------HHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999664 344555555555555666665555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-11 Score=100.70 Aligned_cols=171 Identities=16% Similarity=0.083 Sum_probs=151.4
Q ss_pred hhhcHHHHHHHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~ 181 (365)
..|+.+.|...+++.....|.+ +...|++++|+++|+..++.||.+...+...-.+...+|+
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK-------- 135 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK-------- 135 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC--------
Confidence 6688999999999877777762 2334999999999999999999999999888888888898
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 261 (365)
--+||+.+..-++..+.+.++|..|+.+|.. .|+|+.|. -+++..+-+.|.++-.+..+|.++
T Consensus 136 ------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~-------fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 136 ------NLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAA-------FCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred ------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8899999999999999999999999999999 99999999 999999999999999999999999
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
+.+|.. .+++-|.++|.++++++|.+..+++.+-.|...+.+...+
T Consensus 199 Yt~gg~-------eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 199 YTQGGA-------ENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred HHHhhH-------HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence 999885 6678999999999999999999998887777766654443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-11 Score=114.07 Aligned_cols=189 Identities=11% Similarity=0.053 Sum_probs=155.2
Q ss_pred chHHHHhc-CCChhHhhhcHHHHHHHHHHhhccChhh-----------hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 98 VTDASFSQ-GNTPHQLAEQNNAAMELINSVTGVDEEG-----------RSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 98 ~~~a~~~~-g~~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
++..++.+ +... ...|+++.|..+|.++...+|+. +...|++++|+..+++.++.+|+++.++..++
T Consensus 116 ~p~l~~llaA~aA-~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~ 194 (398)
T PRK10747 116 QPVVNYLLAAEAA-QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAE 194 (398)
T ss_pred chHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35555555 4454 49999999999999999988763 23359999999999999999999999999999
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH------------------------------------------hCC
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATR------------------------------------------LCP 203 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~------------------------------------------~~p 203 (365)
.+|...|+ +++|+..+.+..+ ..|
T Consensus 195 ~~~~~~gd--------------w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 195 QAYIRTGA--------------WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHh--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 99999999 6666644443332 234
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------------------HHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------------ATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 204 ~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------------------------A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
+++.++..++..+.. .|+.++|...+++ +++..++.++.+|+++..+..+|.
T Consensus 261 ~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 261 HQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 467777888888888 9999999987543 688888899999999999999999
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
++...+++ ++|.++|+++++..|++ ..+..++.++..+|+..++..
T Consensus 337 l~~~~~~~----------~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 337 LLMKHGEW----------QEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred HHHHCCCH----------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Confidence 99999996 99999999999999985 446789999999998764433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=120.88 Aligned_cols=188 Identities=22% Similarity=0.198 Sum_probs=156.5
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------------------hhhhhhhHHHHHHHHHHHHHhC-------
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------------------GRSRQRILTFAAKRYANAIERN------- 154 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~~~~A~~~~~~al~~~------- 154 (365)
.....+|.+|+ .++++++|+..|++++..... .+..+|+|.+|..++++++++.
T Consensus 242 ~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 242 SMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 33455899995 999999999999999988743 3667799999999999999863
Q ss_pred -CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHhcCC
Q 017806 155 -PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 155 -p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
|.-...+.+++.++..+++ +++|+..|++++++- +.-+..+.+||.+|.. +|+
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~--------------~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~----~gk 382 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNE--------------YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK----MGK 382 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcc--------------hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH----hcc
Confidence 4446678899999999999 999999999999872 2346789999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-------CCCCHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-------QFDFHRA 297 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~ 297 (365)
+.+|.++|++|+...+..... ++.....++++|..|.+++++ .+|...|.+++.+ .|+--..
T Consensus 383 ~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~----------~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY----------EEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc----------chHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 999999999998888776654 455678899999999999996 8888888888766 3444678
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 017806 298 IYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~~ 316 (365)
+.||+.+|-.+|+.+.+..
T Consensus 453 ~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 453 YLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHHHHcccHHHHHH
Confidence 9999999999998876554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-11 Score=111.42 Aligned_cols=195 Identities=12% Similarity=0.029 Sum_probs=154.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh---------hhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG---------RSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
.+..|++.++|+..-.+.+ ...+++.|..+|.++....+.. ...+++.++|++.++++|+.+|.....|.
T Consensus 611 f~~~pnseeiwlaavKle~-en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~l 689 (913)
T KOG0495|consen 611 FEANPNSEEIWLAAVKLEF-ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWL 689 (913)
T ss_pred HHhCCCcHHHHHHHHHHhh-ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHH
Confidence 4667777777777666663 7778888888888888777652 12348999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.++.++++ .+.|...|...+...|+....|..|+.+-.. .|....|. ..+.+
T Consensus 690 mlGQi~e~~~~--------------ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR-------~ildr 744 (913)
T KOG0495|consen 690 MLGQIEEQMEN--------------IEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRAR-------SILDR 744 (913)
T ss_pred HHhHHHHHHHH--------------HHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHH-------HHHHH
Confidence 99999999999 8888888888888888888888888888877 77777777 55666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCcchhHH--------------------------------------------------
Q 017806 243 AVQLNWNSPQALNNWGLALQELSAIVPARE-------------------------------------------------- 272 (365)
Q Consensus 243 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~-------------------------------------------------- 272 (365)
+.-.+|+++..|...-..-.+.|+...|..
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia 824 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIA 824 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHH
Confidence 666666666666666666556665544433
Q ss_pred ----hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 273 ----KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 273 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
....+++|.++|.+++..+|++..+|.++=..+...|...
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 3366799999999999999999999988888888888443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.2e-12 Score=116.23 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=102.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
.+..|+|++|+.+|.++++++|++..+++++|.++..+|+ +++|+..+++++.++|+++.+|+++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------------~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------------FTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3567899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
.++.. +|++++|+ ..|+++++++|++..+...++.|...+..
T Consensus 78 ~~~~~----lg~~~eA~-------~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 78 TACMK----LEEYQTAK-------AALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHH----hCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999 99999999 88999999999999999999999777744
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=116.07 Aligned_cols=188 Identities=13% Similarity=0.026 Sum_probs=152.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC---hhhh-----------hhhhhHHHHHHHHHHHHHhCC--
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD---EEGR-----------SRQRILTFAAKRYANAIERNP-- 155 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~---~~~~-----------~~~~~~~~A~~~~~~al~~~p-- 155 (365)
....|+++.++..++.++ ...|++++|...+.+..+.. +... ...+..+++.+.+.++.+..|
T Consensus 180 ~~~~P~~~~~l~ll~~~~-~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 180 LEMAPRHKEVLKLAEEAY-IRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred HHhCCCCHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH
Confidence 567899999999999999 59999999999999998653 2211 222334444558888888888
Q ss_pred --CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHhcCCHHHHHH
Q 017806 156 --EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF--YNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 156 --~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
+++.++..+|..+...|+ +++|+..++++++..|++.... ......... .++...++
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~--------------~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~- 319 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDD--------------HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLE- 319 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHH-
Confidence 589999999999999999 9999999999999999987532 223333334 56666666
Q ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSP--QALNNWGLALQELSAIVPAREKQTIVRTAISKFR--AAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+.++++++.+|+++ .....+|.++.+.|++ ++|.++|+ ++++.+|++.. +..+|.++..
T Consensus 320 ------~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~----------~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~ 382 (409)
T TIGR00540 320 ------KLIEKQAKNVDDKPKCCINRALGQLLMKHGEF----------IEAADAFKNVAACKEQLDAND-LAMAADAFDQ 382 (409)
T ss_pred ------HHHHHHHHhCCCChhHHHHHHHHHHHHHcccH----------HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH
Confidence 88999999999999 8899999999999996 99999999 68888887555 6699999999
Q ss_pred hhhhhhhhc
Q 017806 308 LAEDTLRTG 316 (365)
Q Consensus 308 ~g~~~~a~~ 316 (365)
+|+..++..
T Consensus 383 ~g~~~~A~~ 391 (409)
T TIGR00540 383 AGDKAEAAA 391 (409)
T ss_pred cCCHHHHHH
Confidence 998765544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=110.73 Aligned_cols=240 Identities=16% Similarity=0.120 Sum_probs=196.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---h-------hhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---G-------RSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---~-------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+...|.+++.+-..|..+ ..+|+.++|..+.+.++..++. | +...++|++|+++|..|+.++|+|...|
T Consensus 34 L~k~~eHgeslAmkGL~L-~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTL-NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HHhCCccchhHHhccchh-hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 678999999999999999 5999999999999999998876 2 2234899999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH---------
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL--------- 232 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~--------- 232 (365)
..++.+..++++ |+.....-.+.+++.|.....|..++.++.- .|++..|...
T Consensus 113 rDlslLQ~QmRd--------------~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 113 RDLSLLQIQMRD--------------YEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHHHHHh--------------hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhc
Confidence 999999999999 8888888888888888888888888888777 7777776654
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHhcCCCCHH
Q 017806 233 ------------------------------------------------------------WKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 233 ------------------------------------------------------------~~~A~~~~~~al~~~p~~~~ 252 (365)
++.|+..|+..+..+|++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 22378899999999999999
Q ss_pred HHHHHHHHHH-HhcCcchhHH-----------------------------------------------------------
Q 017806 253 ALNNWGLALQ-ELSAIVPARE----------------------------------------------------------- 272 (365)
Q Consensus 253 ~~~~lg~~~~-~~~~~~~~~~----------------------------------------------------------- 272 (365)
.+..+-.++. -.+..+....
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~ 334 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE 334 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh
Confidence 8888877775 2222211100
Q ss_pred ------------------------------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 273 ------------------------------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 273 ------------------------------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
+.|+++.|..+...||...|+..+.+...|.+
T Consensus 335 k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 335 KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 67999999999999999999999999999999
Q ss_pred HHHhhhhhhhhcCcCCCCCCCcchHH--HHHHHHHHHHHhcCccHHHH
Q 017806 305 LYGLAEDTLRTGGTVNPREVSPNELY--SQSAIYIAAAHALKPSYSVY 350 (365)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~~a~~~~~~a~~~~~~~~~~ 350 (365)
+...|....+......+..++..+.| ...+.|+-+|..++.+....
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999998888887777777777655 25666777777666554433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-12 Score=101.99 Aligned_cols=121 Identities=28% Similarity=0.411 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+|+.|.+.++.....+|.+++.+++.|.++.++.+++.+.+....+++|+.-|++||.++|+...+++++|.+|..++..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 46777799999999999999999999999999999988888889999999999999999999999999999999999954
Q ss_pred hhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
.... ...+..|..+..+|.+|...+|++..|..+|.+....
T Consensus 86 ~~d~--------~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 86 TPDT--------AEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp ---H--------HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred cCCh--------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 3211 1234568999999999999999999999999887654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=97.66 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=91.4
Q ss_pred HHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 199 TRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 199 l~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
..++ ++.-+..+.+|..+.. .|++++|+ +.|+.+..+||.++..|++||.++..+|++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~----~G~l~~A~-------~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~---------- 85 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLME----VKEFAGAA-------RLFQLLTIYDAWSFDYWFRLGECCQAQKHW---------- 85 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------
Confidence 4456 7788899999999999 99999999 789999999999999999999999999996
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
++|+.+|.+|+.++|+++.+++++|.|++.+|+...+...+
T Consensus 86 ~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 86 GEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999887666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.9e-11 Score=113.43 Aligned_cols=238 Identities=18% Similarity=0.151 Sum_probs=180.3
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------h------------------hhhhhhHHHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------G------------------RSRQRILTFAAKRYA 148 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------~------------------~~~~~~~~~A~~~~~ 148 (365)
.|.++..+.....++.+..+..++++++..+++.+-.. + ..+.....++++.++
T Consensus 389 ~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 389 QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 46666666655555547889999999999999984321 1 122356789999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 149 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 149 ~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
++++.+|.|+.+.++++.-|...++ .+.|....+++++++ .+++.+|..|+.++.. .+++.
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~--------------l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~ 530 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQ--------------LTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLK 530 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhH
Confidence 9999999999999999999999999 999999999999995 4678999999999999 99999
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 017806 228 EAEELWKQ------------------------------------------------------------------------ 235 (365)
Q Consensus 228 ~A~~~~~~------------------------------------------------------------------------ 235 (365)
+|+...+-
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 98876221
Q ss_pred ----------------------------------------------------------HHHHHHHHHhcCCCCHHHHHHH
Q 017806 236 ----------------------------------------------------------ATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 236 ----------------------------------------------------------A~~~~~~al~~~p~~~~~~~~l 257 (365)
+..++..+-.++|..+.+|+..
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 2344555555666667777777
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc--CcCCCCCCCcc--hHHHHH
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG--GTVNPREVSPN--ELYSQS 333 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~--~~~~~~~~~~~--~~~~~a 333 (365)
|.++...|+. .+|.+.|..|+.++|+++.+...+|.++...|+...+.. -...+..++|. +.|...
T Consensus 691 G~~~~~~~~~----------~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 691 GLLLEVKGQL----------EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hHHHHHHHhh----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 7777777775 999999999999999999999999999999996554443 22223333333 455666
Q ss_pred HHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 334 AIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
+..|.+.+..+.+-+-|..++.+.+..
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCC
Confidence 666677777766666666666665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-11 Score=99.08 Aligned_cols=136 Identities=21% Similarity=0.173 Sum_probs=108.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPED--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAF 209 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 209 (365)
+-.+.+..+...+...++.++.+ ..+|+.+|.++..+|+ +++|+..|++++.+.|+ .+.++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~l~~~~~~~~~~~ 75 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE--------------YAEALQNYYEAMRLEIDPYDRSYIL 75 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhccccchhhHHHH
Confidence 44455667777776666666655 6678999999999999 99999999999999776 34689
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc----chhHHhhhHHHHHHHHHH
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI----VPAREKQTIVRTAISKFR 285 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----~~~~~~~~~~~~A~~~~~ 285 (365)
+++|.++.. .|++++|+ ..|++++.++|.+...+.++|.++..+|+. .........+++|+..|+
T Consensus 76 ~~lg~~~~~----~g~~~eA~-------~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 76 YNIGLIHTS----NGEHTKAL-------EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999999 99999999 778999999999999999999999955532 011224456678888888
Q ss_pred HHHHhCCCCH
Q 017806 286 AAIQLQFDFH 295 (365)
Q Consensus 286 ~al~~~p~~~ 295 (365)
+++..+|.+.
T Consensus 145 ~a~~~~p~~~ 154 (168)
T CHL00033 145 QAIALAPGNY 154 (168)
T ss_pred HHHHhCcccH
Confidence 8999998754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=107.38 Aligned_cols=182 Identities=16% Similarity=0.082 Sum_probs=155.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.+..++...|..+. ..|+..+|+-.|+.|+.+.|. +|...|.+.+|.-....+++..|.++.++
T Consensus 327 I~~~~r~~~alilKG~lL~-~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLI-ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred hccCcccchHHHhccHHHH-hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh
Confidence 6788889999999999994 999999999999999988865 56777889999999999999999999888
Q ss_pred HHHH-HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 162 YNWA-LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 162 ~~lg-~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
..+| .++..... --++|..++++++.++|....+...++.++.. .|++..++ +.+
T Consensus 406 tL~g~~V~~~dp~-------------~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i-------~LL 461 (564)
T KOG1174|consen 406 TLFGTLVLFPDPR-------------MREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDII-------KLL 461 (564)
T ss_pred hhhcceeeccCch-------------hHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHH-------HHH
Confidence 8887 55543322 16899999999999999999999999999999 99999999 668
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++.+...|+ ...+..||.++...+.+ .+|.+.|..|++++|++-.+...|-..-....
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne~----------Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNEP----------QKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 888877764 67889999999999996 99999999999999999998887766544443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=115.03 Aligned_cols=243 Identities=18% Similarity=0.153 Sum_probs=184.1
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------------------------- 132 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------- 132 (365)
+..++.-..++..+|.+| +..-+...|...|.+|..+|+.
T Consensus 485 lrld~~~apaf~~LG~iY-rd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIY-RDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred HhcccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 567888899999999999 5888999999999999999954
Q ss_pred -------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 133 -------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 133 -------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
.+..-+++.+|+..|+.+++.+|.+..+|..+|.+|-..|+ |..|+..|.+|..++|.+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr--------------y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR--------------YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc--------------eehHHHhhhhhHhcCcHh
Confidence 12333899999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------------------HHHHHHHHHhc-----
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQ----------------------------------ATKNYEKAVQL----- 246 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~----------------------------------A~~~~~~al~~----- 246 (365)
.-..+..+.+... .|+|.+|+..+.. |+..++++++.
T Consensus 630 ~y~~fk~A~~ecd----~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 630 KYGRFKEAVMECD----NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999 9999999876432 11112211111
Q ss_pred --C---------------------------------------------------------------CCCHHHHHHHHHHH
Q 017806 247 --N---------------------------------------------------------------WNSPQALNNWGLAL 261 (365)
Q Consensus 247 --~---------------------------------------------------------------p~~~~~~~~lg~~~ 261 (365)
. -.++..|+|+|.-|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 0 01245677777766
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--------------
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN-------------- 327 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~-------------- 327 (365)
.+.-.. ..+...+-..|+.++++++++..++...|+.||.+ ...|...-+...++.++-..|.
T Consensus 786 lr~f~~--l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLL--LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHH--cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 651100 00011223689999999999999999999999998 5556666666666555544332
Q ss_pred -hHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 328 -ELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 328 -~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
..+..+...|.++..++|.+...+-...+
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHH
Confidence 34778888899999999998765544433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=96.66 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
+....+++++|.++...|+ +++|+.+|++++.+.|+. ..++.++|.++.. .|++++|+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~- 92 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGE--------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKAL- 92 (172)
T ss_pred hhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHH-
Confidence 3567789999999999999 999999999999987763 5789999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchh----HHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
..|++++..+|++...+.++|.++..+|+...+ ......+++|++++++++..+|++ +...+..+..
T Consensus 93 ------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~ 163 (172)
T PRK02603 93 ------EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKT 163 (172)
T ss_pred ------HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHh
Confidence 779999999999999999999999999885322 225566788999999999999887 4555555555
Q ss_pred hhhh
Q 017806 308 LAED 311 (365)
Q Consensus 308 ~g~~ 311 (365)
.|+.
T Consensus 164 ~~~~ 167 (172)
T PRK02603 164 TGRS 167 (172)
T ss_pred cCcc
Confidence 5543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=117.77 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=161.0
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
.-|........++..++ ..|=...|+..|++.-..++. ||...|+..+|.....+-++ .|.++..|..+|.+....
T Consensus 393 ~lpp~Wq~q~~laell~-slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLL-SLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred CCCCcchHHHHHHHHHH-HcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence 33444555566677774 788888999999888777765 56666888888888888888 666777788888765432
Q ss_pred c---------CccccC-----CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 172 A---------DNVSLD-----STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 172 ~---------~~~~a~-----~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
. ++.-++ +......+.|.++..+++..++++|-....|+++|.+..+ .+++..|.
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av------- 539 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV------- 539 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH-------
Confidence 2 222222 2223345779999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
++|.+++.++|++..+|+|++.+|.+.++. .+|...+++|+..+-+++.+|.|...+....|..+.+..
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k----------~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKK----------KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhh----------HHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 889999999999999999999999999997 999999999999999999999999999998887665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=97.06 Aligned_cols=102 Identities=23% Similarity=0.251 Sum_probs=85.5
Q ss_pred hhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPE---DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
..|++++|+..|++++.+.|+ .+.++.++|.++...|+ +++|+.+|++++.++|.+...+.++
T Consensus 47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------------HTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 345567777777777766554 34589999999999999 9999999999999999999999999
Q ss_pred HHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 213 AIAISDRA---KMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 213 g~~~~~~~---~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
|.++.... ...|++++|+..+++|+.+|++++..+|.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99998211 0289999999999999999999999998654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=117.50 Aligned_cols=185 Identities=10% Similarity=-0.028 Sum_probs=137.4
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhh------------------hhHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQ------------------RILTFAA 144 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~------------------~~~~~A~ 144 (365)
..+|.+..++..+...+ ...+++++|+..+..++...|.. ++.. .++ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~-~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAY-KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHH
Confidence 34455555555555555 25566666666666555555540 1111 223 555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
.++...+-..+.+..+++.+|.||..+|+ +++|+..|+++++++|+|+.+.+++|..|.. .
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--------------~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~- 163 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNE--------------NKKLKGVWERLVKADRDNPEIVKKLATSYEE----E- 163 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-
Confidence 66666666667777999999999999999 9999999999999999999999999999999 8
Q ss_pred CHHHHHHHHHHHH-------------HHHHHHHhcCCCCHHHHHHH--------H------------HHHHHhcCcchhH
Q 017806 225 RTKEAEELWKQAT-------------KNYEKAVQLNWNSPQALNNW--------G------------LALQELSAIVPAR 271 (365)
Q Consensus 225 ~~~~A~~~~~~A~-------------~~~~~al~~~p~~~~~~~~l--------g------------~~~~~~~~~~~~~ 271 (365)
+.++|++++.+|+ ....+.+..+|.+.+.+..+ | .+|...
T Consensus 164 dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~------- 236 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL------- 236 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh-------
Confidence 9999999987764 44556677788766653322 2 344444
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
.+|++++..++.+|+++|+|..+...++.||...
T Consensus 237 ---~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 237 ---EDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred ---hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 4469999999999999999999999999999843
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-10 Score=112.03 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=127.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|...+.++|+.+|.++.+|+.||.+|..+|+ .++|..++-.|-.++|.+.+.|..++.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd--------------~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD--------------IEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc--------------HHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 455899999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
...+ +|.+.+|. -+|.+||+.+|.+....+..+.+|.++|+. ..|...|.+.+++.|..
T Consensus 216 ls~~----~~~i~qA~-------~cy~rAI~~~p~n~~~~~ers~L~~~~G~~----------~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 216 LSEQ----LGNINQAR-------YCYSRAIQANPSNWELIYERSSLYQKTGDL----------KRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHh----cccHHHHH-------HHHHHHHhcCCcchHHHHHHHHHHHHhChH----------HHHHHHHHHHHhhCCch
Confidence 9999 99999999 889999999999999999999999999997 99999999999999822
Q ss_pred -H----HHHHHHHHHHHHhhhhhhhh
Q 017806 295 -H----RAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 295 -~----~~~~~lg~~~~~~g~~~~a~ 315 (365)
. ......+..+...++.+.+.
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1 12233355555555544443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=93.94 Aligned_cols=117 Identities=32% Similarity=0.432 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
|+.|.+.++.....+|.+++.+++.|.++..+.++ .........+++|+.-|++||.++|+..++++++|.++..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf----k~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF----KQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH----S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999988762 11122345699999999999999999999999999999998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
++...+..+|..+|++|..+|++|+..+|++..+...|..+
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 88888999999999999999999999999987766555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=116.97 Aligned_cols=157 Identities=8% Similarity=0.043 Sum_probs=124.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+++|+++.|+..|+++++.+|.++.+...+..++...|+ +++|+.++++++...|........+|.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~--------------~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR--------------DQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC--------------cHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 557889999999999999999997555588888989999 999999999999444445555555688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .|++++|+ ..|+++++.+|+++.++..++.++...++. ++|+..+++++..+|.+
T Consensus 111 ly~~----~gdyd~Ai-------ely~kaL~~dP~n~~~l~gLa~~y~~~~q~----------~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 111 AYRN----EKRWDQAL-------ALWQSSLKKDPTNPDLISGMIMTQADAGRG----------GVVLKQATELAERDPTV 169 (822)
T ss_pred HHHH----cCCHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHhhcCCH----------HHHHHHHHHhcccCcch
Confidence 9999 99999999 789999999999999999999999999996 99999999999999985
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
... ..++.++...++...++..+...+...|.
T Consensus 170 ~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 170 QNY-MTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 553 44444444444443344443333343333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=96.44 Aligned_cols=129 Identities=20% Similarity=0.284 Sum_probs=99.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE---DYDALYNWALVL 168 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~ 168 (365)
+...+....+++.+|..+. ..|++ ++|+.+|+++++..|+ ...++.++|.++
T Consensus 28 ~~~~~~~a~~~~~lg~~~~-~~g~~------------------------~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 82 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQ-ADGEY------------------------AEALENYEEALKLEEDPNDRSYILYNMGIIY 82 (172)
T ss_pred cccHhhhHHHHHHHHHHHH-HcCCH------------------------HHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 5556677777888888773 55554 5555555555554443 356899999999
Q ss_pred HHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHH
Q 017806 169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-------RTKEAEELWKQATKNYE 241 (365)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g-------~~~~A~~~~~~A~~~~~ 241 (365)
...|+ +++|+.+|++++.+.|++...+..+|.++.. .| +++.|+..+++|+..++
T Consensus 83 ~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 83 ASNGE--------------HDKALEYYHQALELNPKQPSALNNIAVIYHK----RGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred HHcCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999987 55 47788888899999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
+++..+|++ +...+..+...|+
T Consensus 145 ~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 145 QAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHhhCchh---HHHHHHHHHhcCc
Confidence 999999876 4455555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-10 Score=102.09 Aligned_cols=130 Identities=21% Similarity=0.093 Sum_probs=113.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..|+++.|+..+...+...|+|+..+-..+.++...++ ..+|++.+++++.++|+....+.++|.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------------~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------------AKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 35679999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH-------hhhHHHHHHHHHHHHH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE-------KQTIVRTAISKFRAAI 288 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~al 288 (365)
|.. .|++.+|+ ..+...+..+|+++..|..|+.+|..+|+..++.. -.|++++|+..+..+.
T Consensus 384 ll~----~g~~~eai-------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 384 LLK----GGKPQEAI-------RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHh----cCChHHHH-------HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999 99999999 88999999999999999999999999999833332 3355555555555554
Q ss_pred Hh
Q 017806 289 QL 290 (365)
Q Consensus 289 ~~ 290 (365)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 44
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-10 Score=103.47 Aligned_cols=168 Identities=17% Similarity=0.058 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
+|....+++..+..++..|. +++|...++..+...|+|+..+...|.++.. .++..+|+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~--------------~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----~nk~~~A~--- 360 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQ--------------YDEALKLLQPLIAAQPDNPYYLELAGDILLE----ANKAKEAI--- 360 (484)
T ss_pred CccchHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH---
Confidence 36778899999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
+.+++++.++|+.+..+.++|.+|.+.|++ .+|+..++..+.-+|+++..|..|+.+|..+|+..+
T Consensus 361 ----e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 361 ----ERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred ----HHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 779999999999999999999999999997 999999999999999999999999999999998776
Q ss_pred hhcCcCCCCCCCcchHHHHHHHHHHHHHhcC-ccHHHHHHHHHhhh
Q 017806 314 RTGGTVNPREVSPNELYSQSAIYIAAAHALK-PSYSVYSSALRLVR 358 (365)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~al~~~~ 358 (365)
+...+ +..+.....|..+..++..+.+.- .+...+.++-.++.
T Consensus 427 a~~A~--AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~ 470 (484)
T COG4783 427 ALLAR--AEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARID 470 (484)
T ss_pred HHHHH--HHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 65432 222222334577777777766543 55555555544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-10 Score=87.75 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
++.++.+|..+...|+ +++|+..|++++..+|++ ..+++.+|.++.. .|++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~---- 59 (119)
T TIGR02795 2 EEAYYDAALLVLKAGD--------------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAA---- 59 (119)
T ss_pred cHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHH----
Confidence 4678999999999999 999999999999999876 6789999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 235 QATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
..|++++..+|++ +.++..+|.++...|++ ++|+.+|++++...|++..+..
T Consensus 60 ---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 60 ---KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK----------EKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred ---HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh----------HHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888875 68899999999999996 9999999999999999876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.1e-11 Score=112.46 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=141.3
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE 170 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 170 (365)
.|.++..|..+|.+. ....-+++|.++.+..-..... ..+.+++|.++.++++..++++|.....|+.+|.+..+
T Consensus 453 k~~d~~lyc~LGDv~-~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVL-HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ 531 (777)
T ss_pred CCCcchhHHHhhhhc-cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH
Confidence 466777888888888 3777777887777655433111 13446899999999999999999999999999999999
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
+++ ++.|..+|.+++.++|++..+|+|++.+|.. .|+-.+|. ..+..|++.+-++
T Consensus 532 lek--------------~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~-------~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 532 LEK--------------EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAF-------RKLKEALKCNYQH 586 (777)
T ss_pred Hhh--------------hHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHH-------HHHHHHhhcCCCC
Confidence 999 9999999999999999999999999999999 99999999 7899999999999
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
..+|-|.-.+....|.+ ++|++.|.+.+.+.
T Consensus 587 w~iWENymlvsvdvge~----------eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEF----------EDAIKAYHRLLDLR 617 (777)
T ss_pred CeeeechhhhhhhcccH----------HHHHHHHHHHHHhh
Confidence 99999999999999997 99999999998774
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-10 Score=108.24 Aligned_cols=132 Identities=19% Similarity=0.140 Sum_probs=114.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWAI 214 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 214 (365)
.+++..|+.+|+++++++|+++.+|..++.++.....+. .....+...+....++++.+ +|.++.++.-+|.
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~------~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~ 428 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ------PLDEKQLAALSTELDNIVALPELNVLPRIYEILAV 428 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHH
Confidence 356889999999999999999999999999887754411 12234467888888887775 7788899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.+.. .|++++|. ..+++|+.++| +..+|..+|.++...|+. ++|+..|++|+.++|.+
T Consensus 429 ~~~~----~g~~~~A~-------~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~----------~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 429 QALV----KGKTDEAY-------QAINKAIDLEM-SWLNYVLLGKVYELKGDN----------RLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHh----cCCHHHHH-------HHHHHHHHcCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCC
Confidence 9999 99999999 88999999999 589999999999999997 99999999999999998
Q ss_pred HH
Q 017806 295 HR 296 (365)
Q Consensus 295 ~~ 296 (365)
+.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 74
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=105.76 Aligned_cols=162 Identities=16% Similarity=0.062 Sum_probs=132.2
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhh---------hhh----hhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGR---------SRQ----RILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~----~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+.+..+..+..|.++. ..|++++|...+++++..+|... ... +....+...+......+|....++
T Consensus 39 ~~~~~e~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (355)
T cd05804 39 RATERERAHVEALSAW-IAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLL 117 (355)
T ss_pred CCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHH
Confidence 3455677888888885 99999999999999999887632 222 333344444443335677778888
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++...|+ +++|+..++++++++|+++.++..+|.++.. .|++++|+ ..++
T Consensus 118 ~~~a~~~~~~G~--------------~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~-------~~l~ 172 (355)
T cd05804 118 GMLAFGLEEAGQ--------------YDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGI-------AFME 172 (355)
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 899999999999 9999999999999999999999999999999 99999999 6788
Q ss_pred HHHhcCCCCH----HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 242 KAVQLNWNSP----QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 242 ~al~~~p~~~----~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
+++...|..+ ..|..+|.++...|++ ++|+..|++++...|
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~~~~~~~~~~~~ 217 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDY----------EAALAIYDTHIAPSA 217 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHhcccc
Confidence 8888776432 3567899999999996 999999999987766
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-10 Score=110.97 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
++...|..+|-+++++++..+.+|..||.+|...-+ ...|..||++|.++|+.++.++-..+..|.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D--------------m~RA~kCf~KAFeLDatdaeaaaa~adtya 537 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD--------------MKRAKKCFDKAFELDATDAEAAAASADTYA 537 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Confidence 668899999999999999999999999999999888 999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHH-----------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 218 DRAKMRGRTKEAEEL-----------------------------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~-----------------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
. ..+++.|... +.+|+.+|+.+++.+|++...|..+|.+|...|++
T Consensus 538 e----~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry- 612 (1238)
T KOG1127|consen 538 E----ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY- 612 (1238)
T ss_pred c----cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce-
Confidence 9 9999999876 34589999999999999999999999999999996
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
..|++.|.+|..++|.+..+.+..+.....+|+..++..
T Consensus 613 ---------~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 613 ---------SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ---------ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999998887766543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-11 Score=82.15 Aligned_cols=68 Identities=32% Similarity=0.508 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWK 234 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g-~~~~A~~~~~ 234 (365)
+++.+|..+|.++...|+ |++|+.+|+++++++|+++.+|+++|.++.. +| ++.+|+
T Consensus 1 e~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~---- 58 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGD--------------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAI---- 58 (69)
T ss_dssp TSHHHHHHHHHHHHHTTH--------------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHH----
T ss_pred CHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHH----
Confidence 367899999999999999 9999999999999999999999999999999 99 799999
Q ss_pred HHHHHHHHHHhcCC
Q 017806 235 QATKNYEKAVQLNW 248 (365)
Q Consensus 235 ~A~~~~~~al~~~p 248 (365)
+.++++++++|
T Consensus 59 ---~~~~~al~l~P 69 (69)
T PF13414_consen 59 ---EDFEKALKLDP 69 (69)
T ss_dssp ---HHHHHHHHHST
T ss_pred ---HHHHHHHHcCc
Confidence 77999998887
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-11 Score=82.44 Aligned_cols=68 Identities=32% Similarity=0.447 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CcchhHHhhhHHHHHHH
Q 017806 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAIS 282 (365)
Q Consensus 204 ~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~A~~ 282 (365)
+++..|+.+|.++.. .|++++|+ ..|+++++++|+++.+|+++|.++..+| ++ ++|+.
T Consensus 1 e~a~~~~~~g~~~~~----~~~~~~A~-------~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ----QGDYEEAI-------EYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHH----TTHHHHHH-------HHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHH
T ss_pred CHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHH
Confidence 367899999999999 99999999 8899999999999999999999999999 65 99999
Q ss_pred HHHHHHHhCC
Q 017806 283 KFRAAIQLQF 292 (365)
Q Consensus 283 ~~~~al~~~p 292 (365)
.|+++++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999998
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-10 Score=82.26 Aligned_cols=99 Identities=33% Similarity=0.474 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
+++.+|.++...|+ +++|+..++++++..|.+..++..+|.++.. .|++++|+ ..
T Consensus 2 ~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~ 56 (100)
T cd00189 2 ALLNLGNLYYKLGD--------------YDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEAL-------ED 56 (100)
T ss_pred HHHHHHHHHHHHhc--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHH-------HH
Confidence 57899999999999 9999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
|++++...|.+..++..+|.++...|++ +.|...+.+++..+|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 57 YEKALELDPDNAKAYYNLGLAYYKLGKY----------EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHhH----------HHHHHHHHHHHccCCC
Confidence 9999999999999999999999999996 9999999999988773
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.8e-09 Score=90.74 Aligned_cols=162 Identities=14% Similarity=0.038 Sum_probs=137.6
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCH-----HHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDY-----DALYN 163 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~ 163 (365)
..+++.+|.-|+ ..|-+|.|.+.|...+....- .|-...++++||+..++..++.+... ..+-.
T Consensus 107 ~lAl~qL~~Dym-~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 107 LLALQQLGRDYM-AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 356888899995 999999999999988875432 34455899999999999999988753 33445
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
++..+....+ .+.|+..+.+|++-+|++..+-..+|.++.. .|+|..|+ +.++.+
T Consensus 186 LAq~~~~~~~--------------~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV-------~~~e~v 240 (389)
T COG2956 186 LAQQALASSD--------------VDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAV-------EALERV 240 (389)
T ss_pred HHHHHhhhhh--------------HHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHH-------HHHHHH
Confidence 5555555556 9999999999999999999999999999999 99999999 889999
Q ss_pred HhcCCCC-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 244 VQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 244 l~~~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
++.||.+ +.+...|-.||.++|+. ++.+..+.++++..++...
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~----------~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKP----------AEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHccCCccH
Confidence 9999986 57888999999999997 9999999999999887443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-09 Score=101.31 Aligned_cols=231 Identities=12% Similarity=-0.006 Sum_probs=161.1
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh--------hhh--hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG--------RSR--QRILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
...|..-+..+ ...+.++-|+..|..+++.+|.. ++. -|..+.-...+++++..-|.....|...+..+
T Consensus 516 ~~tw~~da~~~-~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSC-EKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHH-HhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 34555556666 47777888888888888888761 111 15556666667777777777777777777777
Q ss_pred HHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH--------------
Q 017806 169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-------------- 234 (365)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~-------------- 234 (365)
+..|+ ...|...+.++++.+|++.++|..--.+... ..+++.|..+|.
T Consensus 595 w~agd--------------v~~ar~il~~af~~~pnseeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv~mK 656 (913)
T KOG0495|consen 595 WKAGD--------------VPAARVILDQAFEANPNSEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERVWMK 656 (913)
T ss_pred HhcCC--------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchhhHH
Confidence 77777 7777777777777777776666665555555 555555554432
Q ss_pred ------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 235 ------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 235 ------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.|++.++.+++..|+++..|..+|.++..+++. +.|...|.+.+..-|+.+..|..|+
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i----------e~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI----------EMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH----------HHHHHHHHhccccCCCCchHHHHHH
Confidence 245778888888999999999999999999987 8999999999999999999999998
Q ss_pred HHHHHhhhhhhhhcCcCCCCCCCcch--HHHHHHHHHHHHHhcCccHHHHHHHHHhhh
Q 017806 303 TVLYGLAEDTLRTGGTVNPREVSPNE--LYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (365)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~~~~~~~~al~~~~ 358 (365)
.+-...|+...+..+...+...+|.+ .|-.+...-.+++..+.+.....+||.-++
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888777777777777777764 234444333444444444444555554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=102.00 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=136.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..++|.+.++..+..|+.+|.+++.+...|..+..+|+ -++|..+.+.++..++.+.-+|--+|.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------------~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------------KEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------------hHHHHHHHHHHhccCcccchhHHHHHH
Confidence 445779999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. ..+|++|+ ++|+.|+.++|++..+|..++.+..+++++ +.....-.+.+++.|++
T Consensus 84 ~~R~----dK~Y~eai-------Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~----------~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 84 LQRS----DKKYDEAI-------KCYRNALKIEKDNLQILRDLSLLQIQMRDY----------EGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHhh----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHhhhhh
Confidence 9999 99999999 889999999999999999999999999996 88888889999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcC
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
...|..++.++.-+|+...+...
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=95.36 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
.+.+.-+.-++.-|..||++++-|..||.+|..+|+ +..|...|.+|+++.|++++.+..+|.+++
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--------------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--------------ASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 347778888999999999999999999999999999 999999999999999999999999999998
Q ss_pred HHHHhcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 218 DRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 218 ~~~~~~g~--~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
.. .|. ..++. ..+++++..||++..+.+.||..++..|++ .+|+..++..+...|.+.
T Consensus 202 ~~---a~~~~ta~a~-------~ll~~al~~D~~~iral~lLA~~afe~g~~----------~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 202 YQ---AGQQMTAKAR-------ALLRQALALDPANIRALSLLAFAAFEQGDY----------AEAAAAWQMLLDLLPADD 261 (287)
T ss_pred Hh---cCCcccHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcCCCCC
Confidence 72 233 33444 789999999999999999999999999996 999999999999987654
Q ss_pred H
Q 017806 296 R 296 (365)
Q Consensus 296 ~ 296 (365)
.
T Consensus 262 ~ 262 (287)
T COG4235 262 P 262 (287)
T ss_pred c
Confidence 3
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-09 Score=98.80 Aligned_cols=134 Identities=12% Similarity=-0.003 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 138 RILTFAAKRYANAI---ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 138 ~~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...+.|+.+|.+++ +++|+.+.++..++.|++..-- .+... ......+|.+.-++|++++|.++.++..+|.
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~----~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~ 346 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL----HGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH----hcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45788999999999 9999999999999999987621 11122 3455889999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .++++.|+ ..|++|+.++|+++.+|+..|.++...|+. ++|+..++++++++|.-
T Consensus 347 ~~~~----~~~~~~a~-------~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~----------~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 347 ITGL----SGQAKVSH-------ILFEQAKIHSTDIASLYYYRALVHFHNEKI----------EEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHh----hcchhhHH-------HHHHHHhhcCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhccCchh
Confidence 9999 99999999 889999999999999999999999999997 99999999999999976
Q ss_pred HHH
Q 017806 295 HRA 297 (365)
Q Consensus 295 ~~~ 297 (365)
..+
T Consensus 406 ~~~ 408 (458)
T PRK11906 406 RKA 408 (458)
T ss_pred hHH
Confidence 544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=98.18 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=105.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPE---------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
.+++.|+|..|+..|++++..-.. -..++.|++.|+..+++ |.+|+.++.+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~--------------~~~Ai~~c~k 282 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE--------------YKEAIESCNK 282 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh--------------HHHHHHHHHH
Confidence 455666666666666666654321 13478999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 198 al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
+|+++|+|..++|..|.++.. +|+|+.|+ ..|+++++++|.+..+...+..+-.+..++ .
T Consensus 283 vLe~~~~N~KALyRrG~A~l~----~~e~~~A~-------~df~ka~k~~P~Nka~~~el~~l~~k~~~~---------~ 342 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLA----LGEYDLAR-------DDFQKALKLEPSNKAARAELIKLKQKIREY---------E 342 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHh----hccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH---------H
Confidence 999999999999999999999 99999999 889999999999999999999998888776 4
Q ss_pred HHHHHHHHHHHHhCC
Q 017806 278 RTAISKFRAAIQLQF 292 (365)
Q Consensus 278 ~~A~~~~~~al~~~p 292 (365)
+...+.|...+..-+
T Consensus 343 ~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 343 EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccc
Confidence 666788888776543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-09 Score=85.53 Aligned_cols=136 Identities=16% Similarity=0.058 Sum_probs=113.7
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALL 188 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~ 188 (365)
+..+..+|-..|..++... ..++...+...+++.+..+|+. ..+.+.+|.++...|+ +
T Consensus 4 q~~~~~~a~~~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--------------~ 64 (145)
T PF09976_consen 4 QQQQAEQASALYEQALQAL-----QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--------------Y 64 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--------------H
Confidence 4556677888888776643 3567888888999999999998 6678889999999999 9
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 189 EEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 189 ~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
++|+..|++++...|+. ..+...|+.++.. .|++++|+ ..++. +...+-.+.++..+|.+|...|
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----~~~~d~Al-------~~L~~-~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQ----QGQYDEAL-------ATLQQ-IPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence 99999999999988664 4688999999999 99999999 55654 3334456788999999999999
Q ss_pred CcchhHHhhhHHHHHHHHHHHHH
Q 017806 266 AIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al 288 (365)
++ ++|+..|++||
T Consensus 133 ~~----------~~A~~~y~~Al 145 (145)
T PF09976_consen 133 DY----------DEARAAYQKAL 145 (145)
T ss_pred CH----------HHHHHHHHHhC
Confidence 96 99999999985
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=83.31 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=85.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHH
Q 017806 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 208 (365)
..+|++++|+..|.+++..+|++ ..+++.+|.++...|+ +++|+..|++++..+|++ +.+
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--------------YADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHHCCCCCcccHH
Confidence 45678888999999999988876 5789999999999999 999999999999998885 678
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
+..+|.++.. .|++++|+ ..++++++..|++..+..
T Consensus 79 ~~~~~~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 79 LLKLGMSLQE----LGDKEKAK-------ATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHH----hCChHHHH-------HHHHHHHHHCcCChhHHH
Confidence 9999999999 99999999 779999999998876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-09 Score=90.92 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
..+.-+.-++.-+..+|+|.+-|..||.+|.. +|++..|. ..|++|+++.|++++++..+|.+++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~-------~AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDAL-------LAYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 37788889999999999999999999999999 99999999 88999999999999999999999998776
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
- .+-.++...|++++.++|++..+.+.||..++..|+..++..
T Consensus 206 ~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 206 Q-------QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred C-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 3 234799999999999999999999999999999996654333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-08 Score=94.74 Aligned_cols=90 Identities=12% Similarity=0.000 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.+++.++..|.. .|++++|+ .+++++|...|+.++.|+..|.+|.+.|++ .+|..+++.
T Consensus 195 w~~~~lAqhyd~----~g~~~~Al-------~~Id~aI~htPt~~ely~~KarilKh~G~~----------~~Aa~~~~~ 253 (517)
T PF12569_consen 195 WTLYFLAQHYDY----LGDYEKAL-------EYIDKAIEHTPTLVELYMTKARILKHAGDL----------KEAAEAMDE 253 (517)
T ss_pred HHHHHHHHHHHH----hCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHH
Confidence 456888999999 99999999 789999999999999999999999999997 999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 287 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 287 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
|-.+|+.|-.+....+..+++.|+.+++...
T Consensus 254 Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 254 ARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998888889999999988777544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-08 Score=86.48 Aligned_cols=163 Identities=15% Similarity=0.071 Sum_probs=118.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDA---LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 208 (365)
+..|++++|+..|++++...|....+ .+++|.+++..++ +++|+..|++.++..|++ +.+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~--------------y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCcCCCchHHH
Confidence 44688999999999999999988655 4899999999999 999999999999999875 567
Q ss_pred HHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchh----
Q 017806 209 FYNWAIAISDRAKMRGR-----------TKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPA---- 270 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~-----------~~~A~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~---- 270 (365)
++.+|.++.. .++ .+.-...-..|+..|++.++..|++. ++...+..+..++.+.+-.
T Consensus 109 ~Y~~g~~~~~----~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 109 LYMRGLTNMA----LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred HHHHHHhhhh----cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988655 431 11111122345588999999999863 3333333332222222100
Q ss_pred HHhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhhhhhhh
Q 017806 271 REKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~a~ 315 (365)
..+.|.|..|+.-|+.+++..|+. .++++.++.+|..+|...++.
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 114455699999999999998765 578999999999999776443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8e-09 Score=104.34 Aligned_cols=201 Identities=11% Similarity=0.014 Sum_probs=135.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC----CchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST----SPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
...+++++|++.++.+++.+|+...+++.+|.++.+.+++..+... ......++ .+++++...+...+++-.+++
T Consensus 42 ~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~ 120 (906)
T PRK14720 42 KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALR 120 (906)
T ss_pred HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHH
Confidence 3568999999999999999999999999999999998884444111 11122344 666777766666777779999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH----------hhhHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE----------KQTIVRTA 280 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~----------~~~~~~~A 280 (365)
.||.||.+ +|++++|. ..|+++++++|+++.+++++|..|... +++.|.. ....|..+
T Consensus 121 ~LA~~Ydk----~g~~~ka~-------~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 121 TLAEAYAK----LNENKKLK-------GVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGI 188 (906)
T ss_pred HHHHHHHH----cCChHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHH
Confidence 99999999 99999999 889999999999999999999999999 8733333 22344444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHH-HHHHHhhhhhhhhcCc-CCCCCCCcchHHHHHHHHHHHHHhcCccHHH
Q 017806 281 ISKFRAAIQLQFDFHRAIYNLG-TVLYGLAEDTLRTGGT-VNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 281 ~~~~~~al~~~p~~~~~~~~lg-~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 349 (365)
..++.+.+..+|++...+..+- .+....| ........ .....+...+.|.....++..+..+++.+.-
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 4444444444555544433221 1212212 00000000 0011123334577788888888888887543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-10 Score=80.39 Aligned_cols=79 Identities=27% Similarity=0.299 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+|+++.|+..|+++++.+|. +...++.+|.+++..|+ |++|+..+++ +..++.+...++.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------------y~~A~~~~~~-~~~~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------------YEEAIELLQK-LKLDPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------------HHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------------HHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence 47899999999999999995 56778889999999999 9999999999 8889999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~ 234 (365)
++.. +|++++|++.++
T Consensus 67 ~~~~----l~~y~eAi~~l~ 82 (84)
T PF12895_consen 67 CLLK----LGKYEEAIKALE 82 (84)
T ss_dssp HHHH----TT-HHHHHHHHH
T ss_pred HHHH----hCCHHHHHHHHh
Confidence 9999 999999995543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-09 Score=94.95 Aligned_cols=200 Identities=15% Similarity=0.077 Sum_probs=132.2
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCC------C
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNP------E 156 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p------~ 156 (365)
..+|..+|+.|+ .+++|++|+++...=+.+... .+-..|.|++|+-++.+-|.+.. .
T Consensus 55 SAIYsQLGNAyf-yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~ 133 (639)
T KOG1130|consen 55 SAIYSQLGNAYF-YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL 133 (639)
T ss_pred HHHHHHhcchhh-hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh
Confidence 467899999996 999999999998765544311 23334899999999888766532 3
Q ss_pred CHHHHHHHHHHHHHhcCcccc----------------------------------------------CCCCchhhhHHHH
Q 017806 157 DYDALYNWALVLQESADNVSL----------------------------------------------DSTSPSKDALLEE 190 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a----------------------------------------------~~~~~~~~~~~~~ 190 (365)
...+++++|.+|...|+-.+. .+..+--+|+|+.
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 467899999999998874333 3333333455666
Q ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 017806 191 ACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQ 262 (365)
Q Consensus 191 A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~ 262 (365)
||.+-+.-+.+... .-.++.|||.++.- +|+++.|++.|..+ +.-|+++... .+..-+.||..|.
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe~A~ehYK~t---l~LAielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFELAIEHYKLT---LNLAIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccHhHHHHHHHH---HHHHHHhcchhHHHHHHHHhhhHHH
Confidence 66555555554322 12456666666666 66666666544443 2223344333 3556678888888
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
-+.++ ++||.++.+-+.+. -....+.+.||.++..+|...++..
T Consensus 287 ll~e~----------~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 287 LLKEV----------QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 88885 99999999877663 2346678888888888887665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=74.70 Aligned_cols=65 Identities=29% Similarity=0.472 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+.+|..+...|+ +++|+.+|+++++.+|+++.+|+.+|.++.. +|++++|+ ..|+
T Consensus 1 ~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~ 55 (65)
T PF13432_consen 1 YALARALYQQGD--------------YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEAL-------AYYE 55 (65)
T ss_dssp HHHHHHHHHCTH--------------HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHH-------HHHH
T ss_pred ChHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 467889999999 9999999999999999999999999999999 99999999 7799
Q ss_pred HHHhcCCCCH
Q 017806 242 KAVQLNWNSP 251 (365)
Q Consensus 242 ~al~~~p~~~ 251 (365)
++++.+|+++
T Consensus 56 ~a~~~~P~~p 65 (65)
T PF13432_consen 56 RALELDPDNP 65 (65)
T ss_dssp HHHHHSTT-H
T ss_pred HHHHHCcCCC
Confidence 9999999875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=74.63 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
+.+|..+.. .|++++|+ ..|+++++.+|+++.+|+.+|.++..+|++ ++|+..|+++++
T Consensus 1 ~~~a~~~~~----~g~~~~A~-------~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAI-------AAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHH----CTHHHHHH-------HHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred ChHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 467889999 99999999 889999999999999999999999999996 999999999999
Q ss_pred hCCCCH
Q 017806 290 LQFDFH 295 (365)
Q Consensus 290 ~~p~~~ 295 (365)
.+|+++
T Consensus 60 ~~P~~p 65 (65)
T PF13432_consen 60 LDPDNP 65 (65)
T ss_dssp HSTT-H
T ss_pred HCcCCC
Confidence 999975
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=92.38 Aligned_cols=119 Identities=24% Similarity=0.185 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHhc
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~ 223 (365)
......|+.+++.|+ |..|+..|++++..-.. -..++.||+.++.+ +
T Consensus 209 ~~~ke~Gn~~fK~gk--------------~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK----l 270 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGK--------------FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK----L 270 (397)
T ss_pred HHHHHhhhHHHhhch--------------HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh----h
Confidence 345678889999999 99999999999876331 13579999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
++|.+|+ .++.++|.++|++..++++.|.++..+|++ +.|+..|+++++++|+|-.+...|..
T Consensus 271 ~~~~~Ai-------~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 271 KEYKEAI-------ESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred hhHHHHH-------HHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999999 889999999999999999999999999996 99999999999999999999988888
Q ss_pred HHHHhhhhh
Q 017806 304 VLYGLAEDT 312 (365)
Q Consensus 304 ~~~~~g~~~ 312 (365)
+-.+..+..
T Consensus 334 l~~k~~~~~ 342 (397)
T KOG0543|consen 334 LKQKIREYE 342 (397)
T ss_pred HHHHHHHHH
Confidence 877766443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=82.28 Aligned_cols=110 Identities=15% Similarity=0.002 Sum_probs=99.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
+.++.-+..+..|.-++..|+ +++|...|+-....+|.+++.|..||.++.. +++|++|+
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk--------------~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~Ai-- 91 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGR--------------LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQKAC-- 91 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHHH--
Confidence 445556778899999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (365)
..|..+..++++++...+..|.||..+|+. +.|+.+|+.++. .|.+....
T Consensus 92 -----~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~----------~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 92 -----DLYAVAFTLLKNDYRPVFFTGQCQLLMRKA----------AKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred -----HHHHHHHHcccCCCCccchHHHHHHHhCCH----------HHHHHHHHHHHh-CcchHHHH
Confidence 779999999999999999999999999997 999999999998 56655443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-08 Score=82.63 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=111.2
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHH
Q 017806 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 208 (365)
+..|++.+|+..|++++...|.. ..+++.+|.+++..|+ ++.|+..|++.+...|++ ..+
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--------------y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--------------YEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCcchhhH
Confidence 55688999999999999988764 6789999999999999 999999999999999985 468
Q ss_pred HHHHHHHHHHHHHhcCC-H---HHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCcchh----HHhhhHH
Q 017806 209 FYNWAIAISDRAKMRGR-T---KEAEELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPA----REKQTIV 277 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~-~---~~A~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~~~~~~~----~~~~~~~ 277 (365)
++.+|.++.. ... . +.-.....+|+..|+..+...|++.. +-..+..+-..+.+.+-. ..+.|.|
T Consensus 82 ~Y~~g~~~~~----~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 82 LYMLGLSYYK----QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH----HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHH----hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999877 321 1 22233455667889999999998743 222222222222211000 1144557
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhhhh
Q 017806 278 RTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 278 ~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~ 312 (365)
..|+..|+.+++..|+.. .++..++.++..+|...
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 999999999999999874 57888999999999665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-08 Score=95.62 Aligned_cols=226 Identities=17% Similarity=0.145 Sum_probs=150.9
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
+.+.+.....++ ...|++++|++++........+ .+...|++++|...|...|..||++...+..+..+
T Consensus 3 ~SE~lLY~~~il-~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 3 HSELLLYKNSIL-EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 345666667778 5899999999999876555433 45666999999999999999999999988888888
Q ss_pred HHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHhcCC----------
Q 017806 168 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH------------DAFYNWAIAISDRAKMRGR---------- 225 (365)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~~~~~g~---------- 225 (365)
...... ...+..+.-...|++..+..|... +-+..+...|....-+.|=
T Consensus 82 ~g~~~~---------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~L 152 (517)
T PF12569_consen 82 LGLQLQ---------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPL 152 (517)
T ss_pred Hhhhcc---------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 744431 001127788888988877776532 2222223333221111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcC------------CCC--HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 226 ---TKEAEELWKQATKNYEKAVQLN------------WNS--PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 226 ---~~~A~~~~~~A~~~~~~al~~~------------p~~--~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
...+ .....-+..|...++.. |.. .++++.++..|...|++ ++|+.+.++||
T Consensus 153 y~d~~K~-~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~----------~~Al~~Id~aI 221 (517)
T PF12569_consen 153 YKDPEKA-AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY----------EKALEYIDKAI 221 (517)
T ss_pred HcChhHH-HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHH
Confidence 0000 01111223333333211 112 35668889999999996 99999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHH--HHHHHHHHHHHhcC
Q 017806 289 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELY--SQSAIYIAAAHALK 344 (365)
Q Consensus 289 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~a~~~~~~a~~~~ 344 (365)
+..|+.++.+...|.++...|+..+|......+..++..+.| ..+..|+-+++.++
T Consensus 222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999998888777677777777655 44555555554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=92.97 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=122.8
Q ss_pred HhcCCChhH--hhhcHHHHHHHHHHhh---ccChh------------------hhh-hhhhHHHHHHHHHHHHHhCCCCH
Q 017806 103 FSQGNTPHQ--LAEQNNAAMELINSVT---GVDEE------------------GRS-RQRILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 103 ~~~g~~~~~--~~g~~~~A~~~~~~al---~~~~~------------------~~~-~~~~~~~A~~~~~~al~~~p~~~ 158 (365)
+.+|...+. .......|..+|.+++ .++|. ++. ...+..+|..+..++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 556654420 2234788999999999 88866 111 24678899999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.++..+|.++...++ ++.|+..|++|+.++|+.+.+|+..|.++.. .|+.++|+ .
T Consensus 339 ~a~~~~g~~~~~~~~--------------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~-------~ 393 (458)
T PRK11906 339 KILAIMGLITGLSGQ--------------AKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEAR-------I 393 (458)
T ss_pred HHHHHHHHHHHhhcc--------------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHH-------H
Confidence 999999999999999 9999999999999999999999999999999 99999999 8
Q ss_pred HHHHHHhcCCCCHHH-HHHHHH-HHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 239 NYEKAVQLNWNSPQA-LNNWGL-ALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 239 ~~~~al~~~p~~~~~-~~~lg~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
.++++++++|.-..+ ...+.. .|...+- +.|+++|-+--+
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 435 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPL-----------KNNIKLYYKETE 435 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCch-----------hhhHHHHhhccc
Confidence 899999999986543 334444 5555554 899998876443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.9e-09 Score=75.15 Aligned_cols=89 Identities=33% Similarity=0.446 Sum_probs=81.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+|++++.+.|.+..++..+|.
T Consensus 11 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------------YEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 456789999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
++.. .|+++.|. ..+.++++.+|
T Consensus 77 ~~~~----~~~~~~a~-------~~~~~~~~~~~ 99 (100)
T cd00189 77 AYYK----LGKYEEAL-------EAYEKALELDP 99 (100)
T ss_pred HHHH----HHhHHHHH-------HHHHHHHccCC
Confidence 9999 99999999 66888777766
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=78.23 Aligned_cols=80 Identities=26% Similarity=0.295 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
|+|+.|+..|+++++.+|. +...++.+|.++.. .|++++|+ ..+++ ++.++.++...+.+|.++..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~-------~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAI-------ELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHH-------HHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHH-------HHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999995 56788889999999 99999999 66877 88888889999999999999
Q ss_pred hcCcchhHHhhhHHHHHHHHHHHH
Q 017806 264 LSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
+|++ ++|+..|+++
T Consensus 71 l~~y----------~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKY----------EEAIKALEKA 84 (84)
T ss_dssp TT-H----------HHHHHHHHHH
T ss_pred hCCH----------HHHHHHHhcC
Confidence 9996 9999999875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-08 Score=87.90 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHH-HHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 157 DYDALYNWALVL-QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 157 ~~~~~~~lg~~~-~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
+...++..|..+ ...|+ |++|+..|++.+...|++ +.+++.+|.+|+. .|++++|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~--------------y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~-- 200 (263)
T PRK10803 141 DANTDYNAAIALVQDKSR--------------QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAA-- 200 (263)
T ss_pred CHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHH--
Confidence 356778888876 55688 999999999999999997 5899999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 233 WKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
..|++++...|+ .+++++.+|.++..+|+. ++|+..|++++...|+...+
T Consensus 201 -----~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~----------~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 201 -----YYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT----------AKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -----HHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHH
Confidence 778888887776 588999999999999996 99999999999999998754
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-08 Score=94.22 Aligned_cols=139 Identities=19% Similarity=0.110 Sum_probs=105.2
Q ss_pred CCCCHHHH--HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHH-H
Q 017806 154 NPEDYDAL--YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA-E 230 (365)
Q Consensus 154 ~p~~~~~~--~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A-~ 230 (365)
-|.+..+| +..|.-+...++ .+.+..|+.+|++|++++|+++.++..++.++.. ...+... .
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~-----------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~----~~~~~~~~~ 397 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGD-----------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIV----RHSQQPLDE 397 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHhcCCccH
Confidence 46666664 455655554433 2348899999999999999999999999998866 4333211 1
Q ss_pred HHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 231 ELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
..+..+....++++.+ +|..+.++.-+|..+...|++ ++|...|++|+.++| ++.+|..+|.++...
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~ 466 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEM-SWLNYVLLGKVYELK 466 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 1234445667776664 788889999999999999996 999999999999999 589999999999999
Q ss_pred hhhhhhhcCc
Q 017806 309 AEDTLRTGGT 318 (365)
Q Consensus 309 g~~~~a~~~~ 318 (365)
|+..++...+
T Consensus 467 G~~~eA~~~~ 476 (517)
T PRK10153 467 GDNRLAADAY 476 (517)
T ss_pred CCHHHHHHHH
Confidence 9876444433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=101.76 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
|++++|.+.+...++.. +.+..++..+...|.+.|+ +++|...|++..+ .+...|+.+...|
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--------------~~~A~~vf~~m~~---~d~~t~n~lI~~y 401 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR--------------MEDARNVFDRMPR---KNLISWNALIAGY 401 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC--------------HHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence 44444444444444433 2233344444444444444 7777777766543 2455677777777
Q ss_pred HHHHHhcCCHHHHHHHHHH----------------------------HHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcC
Q 017806 217 SDRAKMRGRTKEAEELWKQ----------------------------ATKNYEKAVQLNW--NSPQALNNWGLALQELSA 266 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~----------------------------A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~ 266 (365)
.+ .|+.++|+++|++ |.+.|+...+..+ -+...|..+...|.+.|+
T Consensus 402 ~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 402 GN----HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 77 7777777766554 3455555543221 134567777777777777
Q ss_pred cchhHH----------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 267 IVPARE----------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 267 ~~~~~~----------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+++|.. ..|+++.|...+++.+++.|++...|..|..+|...|+.+++...
T Consensus 478 ~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 478 LDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 766554 446678888888888888898888888889999988887766543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=81.90 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
-+..-|+-++..|+ |++|...|..||.+.|.. .-+|.|.|.++.+ ++.++.|+
T Consensus 97 ~lK~EGN~~F~ngd--------------yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI---- 154 (271)
T KOG4234|consen 97 SLKKEGNELFKNGD--------------YEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAI---- 154 (271)
T ss_pred HHHHHHHHhhhccc--------------HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHH----
Confidence 34556788888888 999999999999999974 4578999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
..+.++|+++|.+-.++..++.+|.++..+ ++|+..|++.++.+|....+......
T Consensus 155 ---~dcsKaiel~pty~kAl~RRAeayek~ek~----------eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 155 ---EDCSKAIELNPTYEKALERRAEAYEKMEKY----------EEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred ---HHHHhhHhcCchhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 889999999999999999999999999885 99999999999999998766554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-09 Score=93.29 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=132.6
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
.++......|.++. ..|++++|+..+.+.-.+... .+...++++.|.+.++..-+.+.+..-.....+++....
T Consensus 100 ~~~~~~~~~A~i~~-~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 100 SNEIVQLLAATILF-HEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT 178 (290)
T ss_dssp CHHHHHHHHHHHHC-CCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 44555666677774 889999999999887333322 466779999999999999988888776666667777776
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
|. +.+.+|.-.|++..+..+.++..++.++.++.. +|+|++|. ..+..++..+|+++
T Consensus 179 g~------------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe-------~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 179 GG------------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAE-------ELLEEALEKDPNDP 235 (290)
T ss_dssp TT------------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHH-------HHHHHHCCC-CCHH
T ss_pred Cc------------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhccCCH
Confidence 64 238999999999988888899999999999999 99999999 67888999999999
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
+++.|+..+...+|+. .+.+.+++.+....+|+++..
T Consensus 236 d~LaNliv~~~~~gk~---------~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKP---------TEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-T---------CHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999985 245667888878889998765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-09 Score=91.69 Aligned_cols=103 Identities=19% Similarity=0.135 Sum_probs=84.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
++.++.+|.|++||+||.+++..+|.++..+.+++.+|+.+.+ |..|...+..|+.++.....+|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~--------------FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS--------------FAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH--------------HHHHHHhHHHHHHhhHHHHHHHH
Confidence 3356778888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
.+|.+-.. +|...+|. +.++.+|++.|++-+..-.++
T Consensus 170 RR~~AR~~----Lg~~~EAK-------kD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 170 RRMQARES----LGNNMEAK-------KDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHHHHH----HhhHHHHH-------HhHHHHHhhCcccHHHHHHHH
Confidence 88888888 88888888 778888888888655444333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-07 Score=85.87 Aligned_cols=172 Identities=18% Similarity=0.067 Sum_probs=140.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh---------hhhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE---------EGRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
+...|++..++.-.-.++. +.++|++|+.+.+.-....- -|.++.+..++|+.+++ -.++.+..++.
T Consensus 39 l~~~pdd~~a~~cKvValI-q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~ 114 (652)
T KOG2376|consen 39 LSIVPDDEDAIRCKVVALI-QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE 114 (652)
T ss_pred HhcCCCcHhhHhhhHhhhh-hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence 5677999999998888885 99999999976665443221 16678899999999998 55677777889
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------------------------------CCC-CHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------------------------------CPT-LHDAFYN 211 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------------------------------~p~-~~~~~~~ 211 (365)
..|.+++++|+ |++|...|+..++- .|. ..+.+||
T Consensus 115 L~AQvlYrl~~--------------ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN 180 (652)
T KOG2376|consen 115 LRAQVLYRLER--------------YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYN 180 (652)
T ss_pred HHHHHHHHHhh--------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHH
Confidence 99999999999 99999999988542 222 5678899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--------PQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
.+.++.. .|+|.+|++.+++|++.+++.+..+..+ ..+...++.++..+|+. ++|.+.
T Consensus 181 ~Ac~~i~----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt----------~ea~~i 246 (652)
T KOG2376|consen 181 TACILIE----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT----------AEASSI 246 (652)
T ss_pred HHHHHHh----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch----------HHHHHH
Confidence 9999999 9999999999999999999888766544 23666788999999997 999999
Q ss_pred HHHHHHhCCCCH
Q 017806 284 FRAAIQLQFDFH 295 (365)
Q Consensus 284 ~~~al~~~p~~~ 295 (365)
|...+..+|-+.
T Consensus 247 y~~~i~~~~~D~ 258 (652)
T KOG2376|consen 247 YVDIIKRNPADE 258 (652)
T ss_pred HHHHHHhcCCCc
Confidence 999999988765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-08 Score=88.91 Aligned_cols=186 Identities=15% Similarity=0.039 Sum_probs=138.5
Q ss_pred CCchHHHHhcCCChhHhhhc--------------------HHHHHHHHHHhhccChh----------------hhhhhhh
Q 017806 96 DSVTDASFSQGNTPHQLAEQ--------------------NNAAMELINSVTGVDEE----------------GRSRQRI 139 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~--------------------~~~A~~~~~~al~~~~~----------------~~~~~~~ 139 (365)
-....++|++|++|+ ..|+ +..|+++|..-+.+... .++..|+
T Consensus 132 v~e~RAlYNlgnvYh-akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGd 210 (639)
T KOG1130|consen 132 VLESRALYNLGNVYH-AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGD 210 (639)
T ss_pred HhhhHHHhhhhhhhh-hcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeecc
Confidence 345688999999995 6655 45566666655554422 3667799
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC----CC--CHH
Q 017806 140 LTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC----PT--LHD 207 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~----p~--~~~ 207 (365)
|+.|+.+-+.-|.+.... -.++.++|+++.-+|+ ++.|+++|++.+.+. .. .+.
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~--------------fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN--------------FELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc--------------cHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 999999988887775332 4578999999999999 999999999987652 22 456
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
..+.||..|.- ...+..||.++.+=+.+-+. +..--....+++.||.++..+|.. ++|+.+.++.
T Consensus 277 scYSLgNtytl----l~e~~kAI~Yh~rHLaIAqe-L~DriGe~RacwSLgna~~alg~h----------~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTL----LKEVQKAITYHQRHLAIAQE-LEDRIGELRACWSLGNAFNALGEH----------RKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhhhH----------HHHHHHHHHH
Confidence 78899999998 89999999776665444333 222234577888999999999996 8998888888
Q ss_pred HHh-----CCC-CHHHHHHHHHHHHHhhhh
Q 017806 288 IQL-----QFD-FHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 288 l~~-----~p~-~~~~~~~lg~~~~~~g~~ 311 (365)
+++ ++. -..+..||......+|..
T Consensus 342 l~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 342 LRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 766 232 346788888888888853
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.8e-08 Score=85.67 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFY 210 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 210 (365)
.|+|++|+..|+..++.+|++ +.+++++|.+|+..|+ +++|+..|++++...|+ .+++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~--------------~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK--------------KDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 478999999999999999998 5899999999999999 99999999999999887 588999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
.+|.++.. +|++++|+ ..|+++++..|++..+
T Consensus 222 klg~~~~~----~g~~~~A~-------~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQD----KGDTAKAK-------AVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHH----cCCHHHHH-------HHHHHHHHHCcCCHHH
Confidence 99999999 99999999 7799999999987654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=90.17 Aligned_cols=110 Identities=18% Similarity=0.102 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
....|+.|+.+|. |++||.||.+++..+|.|+-.+.|++.+|.+ +.+|..|. ..+
T Consensus 100 iKE~GN~yFKQgK--------------y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE-------~DC 154 (536)
T KOG4648|consen 100 IKERGNTYFKQGK--------------YEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAE-------EDC 154 (536)
T ss_pred HHHhhhhhhhccc--------------hhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHH-------HhH
Confidence 4567888888888 9999999999999999999999999999999 99999999 778
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
..|+.+|..+..+|..+|.+...+|.. .+|.+.|+.+|++.|++.+....++.+-
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~----------~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNN----------MEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhH----------HHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 999999999999999999999999997 9999999999999999876655554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.4e-08 Score=87.30 Aligned_cols=173 Identities=13% Similarity=0.011 Sum_probs=126.0
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..+...++..+ ...++.+.++.-+...+..... .+...|++++|++.+.+. ++.++....-.
T Consensus 66 l~av~~la~y~-~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vq 139 (290)
T PF04733_consen 66 LQAVRLLAEYL-SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQ 139 (290)
T ss_dssp CHHHHHHHHHH-CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHH
Confidence 34444444433 2334455666665554433311 233458888888887654 56788888889
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHH
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG--RTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g--~~~~A~~~~~~A~~~~~~al 244 (365)
++..+++ ++.|...++.+.+.+.+..-.....+.+... .| ++.+|. ..|+...
T Consensus 140 i~L~~~R--------------~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~----~g~e~~~~A~-------y~f~El~ 194 (290)
T PF04733_consen 140 ILLKMNR--------------PDLAEKELKNMQQIDEDSILTQLAEAWVNLA----TGGEKYQDAF-------YIFEELS 194 (290)
T ss_dssp HHHHTT---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH----HTTTCCCHHH-------HHHHHHH
T ss_pred HHHHcCC--------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH----hCchhHHHHH-------HHHHHHH
Confidence 9999999 9999999999998887766555555555555 55 588888 7788877
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
+..+.++..++.++.++..+|++ ++|.+.+++++..+|+++.++.|+..+...+|+..
T Consensus 195 ~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 195 DKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp CCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred hccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 77778899999999999999996 99999999999999999999999999999999764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-06 Score=78.70 Aligned_cols=190 Identities=15% Similarity=0.092 Sum_probs=138.2
Q ss_pred CchHHHHhcC-CChhHhhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 97 SVTDASFSQG-NTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 97 ~~~~a~~~~g-~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
+.+...+..| ... .++|+++.+=.+..++.+..++ ....+|+++.|.....++++..|.++.++...
T Consensus 115 e~p~l~~l~aA~AA-~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 115 EQPVLAYLLAAEAA-QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred cchHHHHHHHHHHH-HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 3344444444 445 6999999999999999999433 23445999999999999999999999999999
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------------------------C--------------C---
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------------------------C--------------P--- 203 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------------------------~--------------p--- 203 (365)
-.+|...|+ |.+......+.-+- + |
T Consensus 194 ~r~y~~~g~--------------~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l 259 (400)
T COG3071 194 LRAYIRLGA--------------WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL 259 (400)
T ss_pred HHHHHHhcc--------------HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh
Confidence 999999999 44444333332211 1 1
Q ss_pred -CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------HHHHHHHHhcCCCCHHHHHHHH
Q 017806 204 -TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA------------------------TKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 204 -~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A------------------------~~~~~~al~~~p~~~~~~~~lg 258 (365)
+++.+...++.-+.. .|++++|.+....+ ++..++.++..|+++..+.-||
T Consensus 260 r~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 260 RNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred hcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 123444445555555 99999998775442 5667777778888888888888
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
..+.+.+.+ .+|..+|+.|+...|+ ...+..+|.++.++|+...+..
T Consensus 336 ~L~~k~~~w----------~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 336 RLALKNKLW----------GKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHhhHH----------HHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 888888885 8888888888888775 6667788888888887664443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-07 Score=80.03 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=120.2
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCC---HHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPED---YDAL 161 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 161 (365)
.+..++..|..++ ..|++++|+..|++.+...|. +++..+++++|+..|++.++.+|++ ..++
T Consensus 31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4566778888885 899999999999999999986 3567799999999999999999876 5678
Q ss_pred HHHHHHHHHhcCc----cccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHH--------------HHHHHHHHHHH
Q 017806 162 YNWALVLQESADN----VSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAF--------------YNWAIAISDRA 220 (365)
Q Consensus 162 ~~lg~~~~~~~~~----~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~--------------~~lg~~~~~~~ 220 (365)
+.+|.++..+++. ...............+|+..|++.++..|+.. ++. ...|..|.+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~-- 187 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK-- 187 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999887665520 00011122233446789999999999999853 222 234555555
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCc
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAI 267 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~ 267 (365)
.|.|..|+ ..++.+++.-|+. .+++..++.+|..+|..
T Consensus 188 --~~~y~AA~-------~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 188 --RGAYVAVV-------NRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --cCchHHHH-------HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 78877777 7788888877764 67999999999999996
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=73.20 Aligned_cols=96 Identities=24% Similarity=0.168 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+++++|.++-.+|+ .++|+.+|++++...... ..++..+|..+.. +|++++|+
T Consensus 2 ~~~~~~A~a~d~~G~--------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~----- 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGR--------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEAL----- 58 (120)
T ss_pred chHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHH-----
Confidence 578999999999999 999999999999975543 6789999999999 99999999
Q ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 236 ATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 236 A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
..+++++...|+ +..+...++.++...|+. ++|++.+-.++.
T Consensus 59 --~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~----------~eAl~~~l~~la 103 (120)
T PF12688_consen 59 --ALLEEALEEFPDDELNAALRVFLALALYNLGRP----------KEALEWLLEALA 103 (120)
T ss_pred --HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHH
Confidence 668888888788 888899999999999997 999999888775
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-07 Score=76.88 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
..-|.-.|.+++.+.|.-+++++.+|.-+...|+ |+.|.+.|...+++||.+.-++.|+|..++.
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--------------fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY- 145 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAHLNRGIALYY- 145 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--------------chHHHHHhhhHhccCCcchHHHhccceeeee-
Confidence 6667788889999999999999999999999999 9999999999999999999999999999998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
-|++.-|. ..+.+-.+.||++|
T Consensus 146 ---~gR~~LAq-------~d~~~fYQ~D~~DP 167 (297)
T COG4785 146 ---GGRYKLAQ-------DDLLAFYQDDPNDP 167 (297)
T ss_pred ---cCchHhhH-------HHHHHHHhcCCCCh
Confidence 99999998 55666666666665
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-06 Score=91.84 Aligned_cols=191 Identities=9% Similarity=-0.029 Sum_probs=124.4
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccC--hh---------hhhhhhhHHHHHHHHHHHHHh----CCCCHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVD--EE---------GRSRQRILTFAAKRYANAIER----NPEDYDALY 162 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--~~---------~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 162 (365)
+...|..+-..| ...|++++|+.+|....... |+ ++...|++++|.+.|.+.... .|+ ...|.
T Consensus 506 dvvTynaLI~gy-~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyn 583 (1060)
T PLN03218 506 NVHTFGALIDGC-ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVG 583 (1060)
T ss_pred CHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHH
Confidence 456677777777 48888888888887775432 32 345557788888888877653 343 55677
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------ 235 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------ 235 (365)
.+-.+|...|+ +++|.+.|++..+.+ +.+...|+.+...|.+ .|++++|+.+|+.
T Consensus 584 aLI~ay~k~G~--------------ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 584 ALMKACANAGQ--------------VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred HHHHHHHHCCC--------------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Confidence 77777777777 777777777777665 3456667777777777 7777777755332
Q ss_pred ----------------------HHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--
Q 017806 236 ----------------------ATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-- 290 (365)
Q Consensus 236 ----------------------A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 290 (365)
|++.+....+.. +-+..+|+.+...|.+.|++ ++|++.|++....
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~----------eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW----------KKALELYEDIKSIKL 715 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCC
Confidence 224444444332 22455666666666666664 8888888876553
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 291 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
.| +...|..|...|.+.|+.+++...+.
T Consensus 716 ~P-dvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 716 RP-TVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34 46677778888888887776655543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=69.18 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=60.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+..|++++..+|++..+++.+|.++...|+ +++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------------YDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------------HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 457899999999999999999999999999999999999 999999999999999999888877664
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-08 Score=87.33 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=121.4
Q ss_pred hhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHhcCccccCCCCchhhh
Q 017806 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP--E----DYDALYNWALVLQESADNVSLDSTSPSKDA 186 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~ 186 (365)
..++++|.+.|.++-. .+...+++++|..+|.++....- + -..++...+.++... +
T Consensus 28 ~~~~e~Aa~~y~~Aa~----~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~------------- 89 (282)
T PF14938_consen 28 KPDYEEAADLYEKAAN----CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D------------- 89 (282)
T ss_dssp CHHHHHHHHHHHHHHH----HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-------------
T ss_pred CCCHHHHHHHHHHHHH----HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C-------------
Confidence 3589999999998854 34445889999999999877542 1 134566667776665 7
Q ss_pred HHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHH
Q 017806 187 LLEEACKKYDEATRLCP--T----LHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWG 258 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~~~~~-g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 258 (365)
+++|+.+|++++++.- + -+.++.++|.+|.. . |++++|++.|++|+..|+.-= .+ ....++..+|
T Consensus 90 -~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A 162 (282)
T PF14938_consen 90 -PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAA 162 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHH
Confidence 9999999999998732 2 25689999999988 8 999999998888888887521 11 1246788999
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHhhhhhhhhc
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FH---RAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~---~~~~~lg~~~~~~g~~~~a~~ 316 (365)
.++..+|++ ++|+..|+++....-+ .. ..+...+.|++..|+...+..
T Consensus 163 ~l~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 163 DLYARLGRY----------EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHTT-H----------HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHhCCH----------HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999995 9999999999875321 11 345667888888887654433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-07 Score=82.38 Aligned_cols=165 Identities=14% Similarity=0.005 Sum_probs=120.4
Q ss_pred hhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
...++..|+.+++-...++.. |++..|+|++|+..|+-+...+.-+.+.+.+|+.|++-+|.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~------- 106 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ------- 106 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-------
Confidence 566788888888877766533 67778999999999988888777778888999999999888
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH-----------------------HHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE-----------------------LWKQAT 237 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~-----------------------~~~~A~ 237 (365)
|.+|...-.++ |+++.....+-.+..+ .++-++-.. .|+.||
T Consensus 107 -------Y~eA~~~~~ka----~k~pL~~RLlfhlahk----lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 107 -------YIEAKSIAEKA----PKTPLCIRLLFHLAHK----LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred -------HHHHHHHHhhC----CCChHHHHHHHHHHHH----hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 88888776665 3333222111111111 222111111 155577
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
..|.+.+..+|.....-.+++.||.++.=+ +.+.+.+.--++..|+.+.+.+.++-.++++
T Consensus 172 dvYkrvL~dn~ey~alNVy~ALCyyKlDYy----------dvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 172 DVYKRVLQDNPEYIALNVYMALCYYKLDYY----------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHhcchh----------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 999999999999988888999999999875 9999999988999999888877777766654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-08 Score=78.63 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=92.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 199 l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
..+.++.-+..+..|.-++. .|++++|. +.|+-....+|.+++.|..||.++..++++ +
T Consensus 30 ~gis~~~le~iY~~Ay~~y~----~Gk~~eA~-------~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~ 88 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYN----QGRLDEAE-------TFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------Q 88 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------H
Confidence 34455667788999999999 99999999 779999999999999999999999999995 9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
+|+..|-.+..++++++...+..|.|++.+|+...|...+..++.
T Consensus 89 ~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 89 KACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998877766555444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-07 Score=80.89 Aligned_cols=153 Identities=20% Similarity=0.135 Sum_probs=127.5
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
.+..+|..||+++..-.+.+|.+-..+..||.||+...+ |..|-.||++.-.+.|......+.-+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~--------------f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE--------------FALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 445679999999999999999999999999999999999 999999999999999999888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHH----------------HHHHH-------HHHHHhcCC--CCHHHHHHHHHHHHHhcCcch
Q 017806 215 AISDRAKMRGRTKEAEELWK----------------QATKN-------YEKAVQLNW--NSPQALNNWGLALQELSAIVP 269 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~----------------~A~~~-------~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~ 269 (365)
.+++ .+.+..|+.... .||++ .+-.++.-| +.++..++.|.++++.|++
T Consensus 87 SLY~----A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy-- 160 (459)
T KOG4340|consen 87 SLYK----ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY-- 160 (459)
T ss_pred HHHH----hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH--
Confidence 8888 888888876522 12221 112233334 5788999999999999995
Q ss_pred hHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 270 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
+.|++-|+.|++...-++-.-++++.+++..++...+.
T Consensus 161 --------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 161 --------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred --------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 99999999999999989999999999999999766553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-06 Score=90.81 Aligned_cols=197 Identities=13% Similarity=-0.005 Sum_probs=147.1
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC--hh---------hhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD--EE---------GRSRQRILTFAAKRYANAIERNP-EDYDALYN 163 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--~~---------~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 163 (365)
..+...+..+-..+ ...|++++|..+|.+..... |+ ++.+.|++++|+..|.+..+..- -+...|..
T Consensus 469 ~pD~~tynsLI~~y-~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYns 547 (1060)
T PLN03218 469 KADCKLYTTLISTC-AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547 (1060)
T ss_pred CCCHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34566777777788 59999999999999988653 22 56677999999999999877542 24778999
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
+...|...|+ +++|...|.+.... .|+ ...|+.+..+|.+ .|++++|++ .
T Consensus 548 LI~a~~k~G~--------------~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k----~G~ldeA~e-------l 601 (1060)
T PLN03218 548 LISACGQSGA--------------VDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN----AGQVDRAKE-------V 601 (1060)
T ss_pred HHHHHHHCCC--------------HHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH----CCCHHHHHH-------H
Confidence 9999999999 99999999999763 454 5788889999999 999999994 4
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHH-------------------------hhhHHHHHHHHHHHHHHhC-C
Q 017806 240 YEKAVQLN-WNSPQALNNWGLALQELSAIVPARE-------------------------KQTIVRTAISKFRAAIQLQ-F 292 (365)
Q Consensus 240 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~-------------------------~~~~~~~A~~~~~~al~~~-p 292 (365)
|+...+.+ +.+..+|+.+...|.+.|+++.|.. +.|++++|.+.|++..+.. +
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 55555544 3356677777777777777644433 3455688888888777653 2
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 293 DFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
-+...+..|..+|.+.|+.+++...+.
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 346677778888888887776655543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-07 Score=94.07 Aligned_cols=186 Identities=11% Similarity=-0.057 Sum_probs=117.5
Q ss_pred HhcCCChhHhhhcHHHHHHHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Q 017806 103 FSQGNTPHQLAEQNNAAMELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADN 174 (365)
Q Consensus 103 ~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 174 (365)
..+...| ...|++++|..+|.+....+.. ++...|++++|+..|.+..+.. .-+...+..+..++...|+
T Consensus 263 n~Li~~y-~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~- 340 (697)
T PLN03081 263 CALIDMY-SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL- 340 (697)
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc-
Confidence 3334455 3678888888888776554432 4555688888888888776643 2245577777888888888
Q ss_pred cccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 175 VSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 175 ~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
+++|...+...++.. +.+...++.|...|.+ .|++++|.+. |++..+ .+..+
T Consensus 341 -------------~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~v-------f~~m~~---~d~~t 393 (697)
T PLN03081 341 -------------LEHAKQAHAGLIRTGFPLDIVANTALVDLYSK----WGRMEDARNV-------FDRMPR---KNLIS 393 (697)
T ss_pred -------------hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----CCCHHHHHHH-------HHhCCC---CCeee
Confidence 888888888888775 4566778888888888 8888888854 444322 24456
Q ss_pred HHHHHHHHHHhcCcchhHH-------------------------hhhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Q 017806 254 LNNWGLALQELSAIVPARE-------------------------KQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLY 306 (365)
Q Consensus 254 ~~~lg~~~~~~~~~~~~~~-------------------------~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~ 306 (365)
|+.+...|.+.|+.++|.. +.|++++|.++|+...+..+ -+...|..+..+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 6666666666666533322 22334666666666554211 12344555666666
Q ss_pred HhhhhhhhhcC
Q 017806 307 GLAEDTLRTGG 317 (365)
Q Consensus 307 ~~g~~~~a~~~ 317 (365)
+.|+.+++...
T Consensus 474 r~G~~~eA~~~ 484 (697)
T PLN03081 474 REGLLDEAYAM 484 (697)
T ss_pred hcCCHHHHHHH
Confidence 66665555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.1e-07 Score=79.22 Aligned_cols=183 Identities=15% Similarity=0.024 Sum_probs=132.1
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHH--------------HhC-
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAI--------------ERN- 154 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al--------------~~~- 154 (365)
....-+|.+++ .+|++++|...|.-+...+.. |++..|.|.+|...-.++- +++
T Consensus 58 ~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 58 SLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 44555688996 999999999999988875422 5677899999988765541 111
Q ss_pred -----------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Q 017806 155 -----------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 155 -----------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 223 (365)
.+..+-...|+.+++.... |++||+.|.+.+.-+|+.......++.+|++ +
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~H--------------YQeAIdvYkrvL~dn~ey~alNVy~ALCyyK----l 198 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMH--------------YQEAIDVYKRVLQDNPEYIALNVYMALCYYK----L 198 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHH--------------HHHHHHHHHHHHhcChhhhhhHHHHHHHHHh----c
Confidence 1112233445556666666 9999999999999999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH-------------------------------
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------------- 272 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------------- 272 (365)
.-++-+. ..+.--++..|++..+.+.++..++++-+-..++.
T Consensus 199 DYydvsq-------evl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 199 DYYDVSQ-------EVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred chhhhHH-------HHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 8887777 44555566777777777777666655433211111
Q ss_pred -------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 273 -------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 273 -------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+++++.+|+.+++ +++|..+.-+...|.+...+|+.
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhh
Confidence 5577788888766 46888888888888888888853
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.4e-08 Score=88.79 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=63.0
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHhcCCHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~g~~~~A 229 (365)
.+|+++.+|+++|.+|+.+|+ |++|+.+|+++|+++|++..+ |+|+|.+|.. +|++++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr--------------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEA 131 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR--------------VKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKA 131 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHH
Confidence 579999999999999999999 999999999999999999865 9999999999 9999999
Q ss_pred HHHHHHHHHH
Q 017806 230 EELWKQATKN 239 (365)
Q Consensus 230 ~~~~~~A~~~ 239 (365)
+..+++|+..
T Consensus 132 la~LrrALel 141 (453)
T PLN03098 132 ADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHh
Confidence 9665555553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-06 Score=72.78 Aligned_cols=171 Identities=26% Similarity=0.235 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.+..++..|..+...|+ |.+|+..|++++...|.. ..+.+.+|.++.. .|++.+|+
T Consensus 4 ~~~~lY~~a~~~~~~g~--------------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~--- 62 (203)
T PF13525_consen 4 TAEALYQKALEALQQGD--------------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAI--- 62 (203)
T ss_dssp -HHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHH---
T ss_pred CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHH---
Confidence 46788999999999999 999999999999998874 6889999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcc-hhHHhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Q 017806 234 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIV-PAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLY 306 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~ 306 (365)
..|++.++..|+++ .+++.+|.++..+..-. ......+...+|+..|+..+...|+.. .+...+..+-.
T Consensus 63 ----~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 63 ----AAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp ----HHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 77888888888864 68999999988775320 002344556899999999999999874 44455555555
Q ss_pred HhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
.+.+.+..++.+ .-....|..+...+......-|+......|+.++
T Consensus 139 ~la~~e~~ia~~-----Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 139 RLAEHELYIARF-----YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHHHHH-----HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 555554443322 0011245677777777777778777777766544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.8e-08 Score=66.85 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
.|++++|+..|++++..+|++..+++.+|.++.. .|++++|. ..+.+++..+|+++.++..++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAE-------ELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHH-------HHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCcCHHHHHHHHhcC
Confidence 3459999999999999999999999999999999 99999999 78999999999998888777653
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=66.83 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=63.0
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
..+|...++ |++|+.++++++.++|+++..|..+|.++.. +|++.+|+ ..|++++
T Consensus 2 ~~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~-------~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQED--------------YEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEAL-------EDLERAL 56 (73)
T ss_pred HHHHHhCCC--------------HHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHH-------HHHHHHH
Confidence 467777888 9999999999999999999999999999999 99999999 7899999
Q ss_pred hcCCCCHHHHHHHHH
Q 017806 245 QLNWNSPQALNNWGL 259 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~ 259 (365)
+..|++..+...++.
T Consensus 57 ~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 57 ELSPDDPDARALRAM 71 (73)
T ss_pred HHCCCcHHHHHHHHh
Confidence 999998887665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.2e-08 Score=88.86 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=65.6
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCcchhHHhhhHH
Q 017806 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA---LNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 201 ~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
.+|+++.+|+++|.+|.. .|+|++|+ ..|+++++++|++..+ |+|+|.+|..+|+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~----lGryeEAI-------a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~---------- 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS----KGRVKDAL-------AQFETALELNPNPDEAQAAYYNKACCHAYREEG---------- 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------
Confidence 578999999999999999 99999999 8899999999999865 99999999999997
Q ss_pred HHHHHHHHHHHHh
Q 017806 278 RTAISKFRAAIQL 290 (365)
Q Consensus 278 ~~A~~~~~~al~~ 290 (365)
++|+.+|++|+++
T Consensus 129 dEAla~LrrALel 141 (453)
T PLN03098 129 KKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-08 Score=89.12 Aligned_cols=159 Identities=19% Similarity=0.128 Sum_probs=112.6
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------hhhhhhhHHHHHHHHHHHHHhCC--CC----H
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------GRSRQRILTFAAKRYANAIERNP--ED----Y 158 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~A~~~~~~al~~~p--~~----~ 158 (365)
+.+...|..+ ...|++++|.+.|.++...... ..+...++++|+.+|++++.+.- ++ +
T Consensus 36 ~~y~~Aa~~f-k~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCF-KLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3345555666 4667777777777766554422 13445689999999999998742 22 5
Q ss_pred HHHHHHHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 159 DALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCP--T----LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 159 ~~~~~lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.++..+|.+|... |+ +++|+++|++|+++.. + -..++.++|.++.. .|+|++|+
T Consensus 115 ~~~~~lA~~ye~~~~d--------------~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~- 175 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGD--------------YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAI- 175 (282)
T ss_dssp HHHHHHHHHHCCTT----------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHH-
T ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHH-
Confidence 5788899999888 88 9999999999999732 1 24678899999999 99999999
Q ss_pred HHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 232 LWKQATKNYEKAVQLN---W----NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.|++..... + +-...+...+.|+...|+. ..|...|++....+|..
T Consensus 176 ------~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~----------v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 176 ------EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY----------VAARKALERYCSQDPSF 229 (282)
T ss_dssp ------HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHGTTSTTS
T ss_pred ------HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence 5566655432 1 1124567788899999996 99999999999998865
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-06 Score=75.04 Aligned_cols=227 Identities=14% Similarity=0.053 Sum_probs=174.5
Q ss_pred hhhcHHHHHHHHHHhhccChh---h-------hhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE---G-------RSRQRILTFAAKRYANAIERNPE-DYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~---~-------~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
..|+|.+|.....+.-...+. + --..|+++.|=.++.++-+..++ ...+...++.++...|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d------- 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD------- 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-------
Confidence 568899999999887776655 1 12348999999999999998443 34567788888888898
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------------HH-----
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------AT----- 237 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------------------A~----- 237 (365)
++.|.....++++..|.++.+..-.-.+|.. .|+|.+...+..+ |.
T Consensus 169 -------~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 169 -------YPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred -------chhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999998876432 10
Q ss_pred ------------HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH---------------------hhhHHHHHHHHH
Q 017806 238 ------------KNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---------------------KQTIVRTAISKF 284 (365)
Q Consensus 238 ------------~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~ 284 (365)
.+.+..-..--+++.....++.-+..+|+.+.|.. +.+++..=++..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence 01111000112345666667777888888766655 457777778888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc-hHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 285 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN-ELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 285 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
++.+...|+++..+..||..+.+.+.+.++...+..+++..++ ..|...+..|.+.++...+...+..++-.
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8888889999999999999999999998888888777777666 46777888888888877777777777743
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-07 Score=83.64 Aligned_cols=112 Identities=18% Similarity=0.089 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
.++++.|+..|++..+.+|+ +...++.++...++ -.+|+..+.+++...|.+...+...+..+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------------E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------------EVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 37899999999999998876 56678999999888 99999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.. .++++.|+ ...++++.+.|++...|+.|+.+|..+|++ +.|+-.+..
T Consensus 245 l~----k~~~~lAL-------~iAk~av~lsP~~f~~W~~La~~Yi~~~d~----------e~ALlaLNs 293 (395)
T PF09295_consen 245 LS----KKKYELAL-------EIAKKAVELSPSEFETWYQLAECYIQLGDF----------ENALLALNS 293 (395)
T ss_pred Hh----cCCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHhcCCH----------HHHHHHHhc
Confidence 99 99999999 889999999999999999999999999996 999876664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=66.15 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
..++.. .+++++|+ +++++++.++|+++..|..+|.++..+|++ .+|+..|+++++..|
T Consensus 2 ~~~~~~----~~~~~~A~-------~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEAL-------EVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSP 60 (73)
T ss_pred HHHHHh----CCCHHHHH-------HHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCC
Confidence 456777 99999999 889999999999999999999999999996 999999999999999
Q ss_pred CCHHHHHHHH
Q 017806 293 DFHRAIYNLG 302 (365)
Q Consensus 293 ~~~~~~~~lg 302 (365)
++..+....+
T Consensus 61 ~~~~~~~~~a 70 (73)
T PF13371_consen 61 DDPDARALRA 70 (73)
T ss_pred CcHHHHHHHH
Confidence 9988765544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=75.18 Aligned_cols=99 Identities=22% Similarity=0.195 Sum_probs=87.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 132 EGRSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 132 ~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
+.++..|+|.+|...|..||++-|.. ..++.++|.++..++. ++.||..+.++|+++|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--------------~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--------------WESAIEDCSKAIELNPTYE 168 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--------------HHHHHHHHHhhHhcCchhH
Confidence 34577788999999999999987764 4578899999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
.++..++.+|.+ ..+|++|+ ..|.+.++.+|....+--
T Consensus 169 kAl~RRAeayek----~ek~eeal-------eDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 169 KALERRAEAYEK----MEKYEEAL-------EDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHHHHHHHh----hhhHHHHH-------HHHHHHHHhCcchHHHHH
Confidence 999999999999 99999999 789999999998765543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-08 Score=71.27 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 203 p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
|+-..+++++|.++.. +|++++|+.+|++|+..++..-...|..+.+++++|.++..+|++ ++|++
T Consensus 2 ~~~a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~ 67 (78)
T PF13424_consen 2 PDTANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHH
Confidence 3456789999999999 999999999999888884333222344578999999999999996 99999
Q ss_pred HHHHHHHh
Q 017806 283 KFRAAIQL 290 (365)
Q Consensus 283 ~~~~al~~ 290 (365)
+|++++++
T Consensus 68 ~~~~al~i 75 (78)
T PF13424_consen 68 YYQKALDI 75 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999976
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.2e-08 Score=69.83 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---CP----TLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
|+...++.++|.+|..+|+ |++|+.+|++++++ .+ ..+.+++++|.++.. .|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~ 63 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR--------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHH
Confidence 4456789999999999999 99999999999976 12 236789999999999 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 017806 228 EAEELWKQATKNYEK 242 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~ 242 (365)
+|++++++|++.+++
T Consensus 64 ~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 64 EALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcC
Confidence 999887777776653
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-07 Score=76.45 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
.+..++.+|..|-.+|- +.-|.-.|.+++.+.|+.+.+++.||..+.. .|+|+.|.
T Consensus 64 RA~l~fERGvlYDSlGL--------------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~----a~~fdaa~------ 119 (297)
T COG4785 64 RAQLLFERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AGNFDAAY------ 119 (297)
T ss_pred HHHHHHHhcchhhhhhH--------------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh----cccchHHH------
Confidence 45667888888888888 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
+.|...+++||.+--+..|+|..+..-|++ .-|.+.|.+-.+.+|++|.
T Consensus 120 -eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~----------~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 120 -EAFDSVLELDPTYNYAHLNRGIALYYGGRY----------KLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred -HHhhhHhccCCcchHHHhccceeeeecCch----------HhhHHHHHHHHhcCCCChH
Confidence 889999999999999999999999999996 9999999999999998874
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-06 Score=69.43 Aligned_cols=108 Identities=18% Similarity=0.084 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLAL 261 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~ 261 (365)
...+...+++.+.-.|+. ..+...+|.++.. .|++++|+ ..|++++...|+. ..+..+++.++
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~-------~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAK-------AALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 888888999999999988 6778889999999 99999999 7788888876554 46888999999
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
...|++ ++|+..++. +.-.+-.+.++..+|.++...|+..++...
T Consensus 96 ~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 96 LQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999996 999999976 334455577888899999999988766554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-05 Score=68.88 Aligned_cols=164 Identities=26% Similarity=0.311 Sum_probs=115.3
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------hhhhhhhHHHHHHHHHHHHHhCC---CCHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------GRSRQRILTFAAKRYANAIERNP---EDYD 159 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~A~~~~~~al~~~p---~~~~ 159 (365)
..+.....+...|... ...+++..++..+..++...+. .+...|+++.|+..|.+++..+| ....
T Consensus 90 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (291)
T COG0457 90 LLPNLAEALLNLGLLL-EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAE 168 (291)
T ss_pred hccchHHHHHHHHHHH-HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHH
Confidence 4556666677777777 4777777777777777775543 24455777777777777777666 3455
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
....++..+...++ ++.++..+.+++...+. ....+..++..+.. .+++..|+ .
T Consensus 169 ~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~ 223 (291)
T COG0457 169 ALLALGALLEALGR--------------YEEALELLEKALKLNPDDDAEALLNLGLLYLK----LGKYEEAL-------E 223 (291)
T ss_pred HHHHhhhHHHHhcC--------------HHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cccHHHHH-------H
Confidence 55666666666666 77778888887777777 57777777777777 77777777 6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
.+..++...|.....+..++..+...+.. +.+...+.+++...|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 224 YYEKALELDPDNAEALYNLALLLLELGRY----------EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccHHHHhhHHHHHHHcCCH----------HHHHHHHHHHHHhCcc
Confidence 67777777777666777777777755544 7777777777777776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=80.49 Aligned_cols=105 Identities=16% Similarity=0.039 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++.|+..|++..+.+|+ +...++.++.. .++-.+|+ +.+.++++.+|.+...+...+..+...+++
T Consensus 185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~----~~~E~~AI-------~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VAVLLARVYLL----MNEEVEAI-------RLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHh----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 99999999999998875 56678999988 88888888 778888899999999999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
+.|+...++++.+.|++...|+.|+.+|..+|+.+.|+.
T Consensus 251 ----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 251 ----------ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred ----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999888753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-06 Score=87.82 Aligned_cols=151 Identities=10% Similarity=-0.012 Sum_probs=86.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWA 213 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 213 (365)
+.|++++|...|... +.+..+|..+...|...|+ .++|+..|++..+. .|+ ...+..+-
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~--------------~~~A~~lf~~M~~~g~~Pd-~~T~~~ll 596 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK--------------GSMAVELFNRMVESGVNPD-EVTFISLL 596 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCC-cccHHHHH
Confidence 345566666555553 3455566666666666666 55555555555442 232 22333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhcCcchhHH------------------
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQ---LNWNSPQALNNWGLALQELSAIVPARE------------------ 272 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------ 272 (365)
.++.+ .|.+++|..+ |+...+ +.| +...|..+..+|.+.|++++|..
T Consensus 597 ~a~~~----~g~v~ea~~~-------f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl 664 (857)
T PLN03077 597 CACSR----SGMVTQGLEY-------FHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664 (857)
T ss_pred HHHhh----cChHHHHHHH-------HHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 44444 5555555532 222221 122 22344444444444444433333
Q ss_pred ----hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 273 ----KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 273 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
..|+.+.+....++.++++|++...|..|+.+|...|++.++...
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 123348888889999999999999999999999999988776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=80.73 Aligned_cols=174 Identities=17% Similarity=0.066 Sum_probs=129.9
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCccccC
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPE---DYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
..|+|++|+....+.+...|+ +....+.|++|+.. ++.++. +....+..+.|.+++++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk----- 94 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNK----- 94 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHccc-----
Confidence 778999999999999999765 34556888888743 444442 12223789999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------------HHHH-
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------ATKN- 239 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~------------------A~~~- 239 (365)
.++|+.+++ .+++.+..+.-..|.++++ +|+|++|+..|+. |+..
T Consensus 95 ---------~Dealk~~~---~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 95 ---------LDEALKTLK---GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred ---------HHHHHHHHh---cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999999999 5667777788889999999 9999999988764 1111
Q ss_pred ----HHHHHhcCCC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-------CCCC--------HHHHH
Q 017806 240 ----YEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-------QFDF--------HRAIY 299 (365)
Q Consensus 240 ----~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~--------~~~~~ 299 (365)
..+.+...|. +.+.++|.+.++...|++ .+|++.+++|+.+ ...+ ..+..
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky----------~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKY----------NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 2233333444 678899999999999996 9999999999544 1111 23567
Q ss_pred HHHHHHHHhhhhhhhhcCcCC
Q 017806 300 NLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 300 ~lg~~~~~~g~~~~a~~~~~~ 320 (365)
.|+.++..+|+..++...+..
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHH
Confidence 789999999998887664433
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-07 Score=76.93 Aligned_cols=91 Identities=21% Similarity=0.092 Sum_probs=81.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.++.-..|+.|+.+|.++|.++|..+..|.+.+.|+.++.+ ++.+...++++++++|+.+..++.+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~--------------~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH--------------WEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--------------hhhhhhhHHHHHhcChHHHHHHHHH
Confidence 44556779999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
|..+.. ...|++||..+.+|...++
T Consensus 85 g~~~l~----s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 85 GQWLLQ----SKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHHHHh----hccccHHHHHHHHHHHHHh
Confidence 999999 9999999966666544433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-06 Score=66.20 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.+..++.-|......|+ |++|++.|+......|. ...+...||.+++. .|++++|+
T Consensus 9 ~~~~ly~~a~~~l~~~~--------------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~--- 67 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGN--------------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAI--- 67 (142)
T ss_pred CHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHH---
Confidence 35678889999999999 99999999999999876 46789999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcC-----cchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 234 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSA-----IVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
..+++-++++|+++ .+++..|.+++.+.. +-......+....|...|++.|...|++..+
T Consensus 68 ----a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 68 ----AAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred ----HHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 77999999999875 689999999999865 0011123344589999999999999987654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-06 Score=64.93 Aligned_cols=90 Identities=23% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
.+++++|.++.. .|+.++|+ ..|++++...... ..++..+|.+|..+|++ ++|+..
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai-------~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~ 60 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAI-------PLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALAL 60 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHH-------HHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHH
Confidence 578999999999 99999999 7788888765443 67999999999999996 999999
Q ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 284 FRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 284 ~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+++++...|+ +..+...++.++...|+..++...
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999888 788889999999999988765543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-06 Score=73.78 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=90.7
Q ss_pred HHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 122 LINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 122 ~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
.|+.|+.+ +..|+|..|...|..-++..|+. +.++|+||.+++.+|+ |+.|...|..+
T Consensus 144 ~Y~~A~~~-----~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~--------------y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDL-----YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD--------------YEDAAYIFARV 204 (262)
T ss_pred HHHHHHHH-----HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc--------------chHHHHHHHHH
Confidence 45555443 55688999999999999999976 6899999999999999 99999999999
Q ss_pred HHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 199 TRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 199 l~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
++-.|+ -+++++.||.+... +|+.++|- ..|+++++..|+...+..
T Consensus 205 ~k~~P~s~KApdallKlg~~~~~----l~~~d~A~-------atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 205 VKDYPKSPKAPDALLKLGVSLGR----LGNTDEAC-------ATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHhCCCCCCChHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHHCCCCHHHHH
Confidence 998776 47899999999999 99999999 779999999998876654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-06 Score=64.40 Aligned_cols=100 Identities=32% Similarity=0.351 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+-.-|.++...|+ ++.|++.|.+++.+.|.++.+|+|.+.++.- +|+.++|+ ..+
T Consensus 46 LEl~~valaE~g~--------------Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~AL-------dDL 100 (175)
T KOG4555|consen 46 LELKAIALAEAGD--------------LDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEAL-------DDL 100 (175)
T ss_pred HHHHHHHHHhccc--------------hHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHH-------HHH
Confidence 3455777788888 9999999999999999999999999999999 99999999 668
Q ss_pred HHHHhcCCC----CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 241 EKAVQLNWN----SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 241 ~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
++++++... -..++...|.+|..+|+. +.|...|+.|-++....+
T Consensus 101 n~AleLag~~trtacqa~vQRg~lyRl~g~d----------d~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 101 NKALELAGDQTRTACQAFVQRGLLYRLLGND----------DAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHhCch----------HHHHHhHHHHHHhCCHHH
Confidence 888877643 246888999999999997 999999999988876544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-06 Score=72.72 Aligned_cols=104 Identities=24% Similarity=0.298 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
.|+.|.-++..|+ |..|...|...++..|+. +.++|-||.+++. +|++++|.
T Consensus 144 ~Y~~A~~~~ksgd--------------y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa------- 198 (262)
T COG1729 144 LYNAALDLYKSGD--------------YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAA------- 198 (262)
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHH-------
Confidence 7889999999999 999999999999999984 7899999999999 99999999
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 238 KNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 238 ~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
..|..+++..|+ -+++++-+|.++..+|+. ++|...|+++++..|+...+..
T Consensus 199 ~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~----------d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 199 YIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT----------DEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHCCCCHHHHH
Confidence 557777766655 578999999999999997 9999999999999999876654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.8e-05 Score=66.35 Aligned_cols=163 Identities=20% Similarity=0.141 Sum_probs=118.6
Q ss_pred HHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHH
Q 017806 118 AAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194 (365)
Q Consensus 118 ~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~ 194 (365)
-+.++|++++.. +..|++++|+..|+.+...+|.. ..+...++.++...++ +++|+..
T Consensus 33 p~~~LY~~g~~~-----L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~--------------y~~A~~~ 93 (254)
T COG4105 33 PASELYNEGLTE-----LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE--------------YDLALAY 93 (254)
T ss_pred CHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc--------------HHHHHHH
Confidence 345556555443 45578899999999988887754 5678999999999999 9999999
Q ss_pred HHHHHHhCCCCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHH--------------
Q 017806 195 YDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QAL-------------- 254 (365)
Q Consensus 195 ~~~al~~~p~~~---~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~---~~~-------------- 254 (365)
.++.+.+.|.++ -+++..|.++...+ .+...--..-..|+..|+..+..-|++. ++.
T Consensus 94 ~drFi~lyP~~~n~dY~~YlkgLs~~~~i---~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 94 IDRFIRLYPTHPNADYAYYLKGLSYFFQI---DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhccC---CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 999999998864 46777888776532 2222222223456688999999999863 221
Q ss_pred HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhhhh
Q 017806 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 255 ~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~ 312 (365)
...|..|.+.|. |..|+..++.+++-.|+- .+++..+..+|..+|-..
T Consensus 171 m~IaryY~kr~~----------~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~ 221 (254)
T COG4105 171 MAIARYYLKRGA----------YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTD 221 (254)
T ss_pred HHHHHHHHHhcC----------hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChH
Confidence 134555666666 599999999999986654 467888899999998554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-05 Score=62.72 Aligned_cols=133 Identities=18% Similarity=0.111 Sum_probs=109.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhc
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTLHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~ 223 (365)
.-..+.++..|... -.+.||..+..+|+ +.+|..+|++++. +..+++..+..++.+.+. .
T Consensus 77 Rea~~~~~~ApTvq-nr~rLa~al~elGr--------------~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----~ 137 (251)
T COG4700 77 REATEELAIAPTVQ-NRYRLANALAELGR--------------YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----I 137 (251)
T ss_pred HHHHHHHhhchhHH-HHHHHHHHHHHhhh--------------hhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----h
Confidence 33344555556543 36789999999999 9999999999876 567889999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (365)
+++..|. ..+++..+.+|. .++....+|.+|..+|.+ .+|...|+.++...|+ +.+....
T Consensus 138 ~~~A~a~-------~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~----------a~Aesafe~a~~~ypg-~~ar~~Y 199 (251)
T COG4700 138 QEFAAAQ-------QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY----------ADAESAFEVAISYYPG-PQARIYY 199 (251)
T ss_pred ccHHHHH-------HHHHHHhhcCCccCCCCchHHHHHHHHhcCCc----------hhHHHHHHHHHHhCCC-HHHHHHH
Confidence 9999999 668888888875 578889999999999996 8899999999999986 6777778
Q ss_pred HHHHHHhhhhhhh
Q 017806 302 GTVLYGLAEDTLR 314 (365)
Q Consensus 302 g~~~~~~g~~~~a 314 (365)
+..+.++|+..++
T Consensus 200 ~e~La~qgr~~ea 212 (251)
T COG4700 200 AEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHhcchhHH
Confidence 8888888865433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.9e-05 Score=70.02 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=116.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------------hhh---hhhhHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------------GRS---RQRILTFAAKRYANAI 151 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~---~~~~~~~A~~~~~~al 151 (365)
+..+|-+-++|+..-.+. +..|+.+.-.+.|++||...|. +++ ...+.+.+.+.|+.+|
T Consensus 315 v~~np~nYDsWfdylrL~-e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLE-ESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHH-HhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 577999999998877777 6889999999999999998876 122 2378999999999999
Q ss_pred HhCCCC----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 152 ERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 152 ~~~p~~----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
++-|.. +..|...|.....+.+ ...|...+-.||...|.+- ++...-.+-.+ +++++
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~--------------l~~ARkiLG~AIG~cPK~K-lFk~YIelElq----L~efD 454 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLN--------------LTGARKILGNAIGKCPKDK-LFKGYIELELQ----LREFD 454 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcc--------------cHHHHHHHHHHhccCCchh-HHHHHHHHHHH----HhhHH
Confidence 998863 5567777777777777 7777777777777777652 22222223333 44444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
... +.|++-|+..|.+..+|...|.+-..+|+. +.|...|+-|++.
T Consensus 455 RcR-------kLYEkfle~~Pe~c~~W~kyaElE~~Lgdt----------dRaRaifelAi~q 500 (677)
T KOG1915|consen 455 RCR-------KLYEKFLEFSPENCYAWSKYAELETSLGDT----------DRARAIFELAISQ 500 (677)
T ss_pred HHH-------HHHHHHHhcChHhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhcC
Confidence 444 777777777787777887777777777776 5555555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.2e-05 Score=63.56 Aligned_cols=175 Identities=26% Similarity=0.260 Sum_probs=140.8
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhc--cChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTG--VDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~--~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
.......+..+ ...+.+..++..+...+. ..+. .....+++..++..+.+++..++.........+.
T Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALAL-LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHH-HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 56667777777 488889999999988875 2222 2233477888999999999988877666666666
Q ss_pred -HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 167 -VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP---TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 167 -~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
++...|+ ++.|+..|.+++..+| .....+..++..+.. .+++..++ ..+.+
T Consensus 138 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~~~~ 192 (291)
T COG0457 138 GALYELGD--------------YEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEAL-------ELLEK 192 (291)
T ss_pred HHHHHcCC--------------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHH-------HHHHH
Confidence 8889999 9999999999988777 456667777777777 88888888 77888
Q ss_pred HHhcCCC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 243 AVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 243 al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++...+. ....+..++.++...+++ ..|+..+.+++...|.....+..++..+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKY----------EEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccH----------HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 8888888 689999999999999985 99999999999999987777888888877444
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.3e-07 Score=75.37 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
.+|..||.+|.++|.++|..+..|.|.+.++.+ ..+|+.+. ...+++++++|+.+..++.+|.++....
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~-------~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVE-------EDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhh-------hhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 349999999999999999999999999999999 99999999 7799999999999999999999999999
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+ ++||..+++|..+
T Consensus 93 ~~----------~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GY----------DEAIKVLQRAYSL 107 (284)
T ss_pred cc----------cHHHHHHHHHHHH
Confidence 96 9999999999766
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.8e-06 Score=63.98 Aligned_cols=101 Identities=25% Similarity=0.246 Sum_probs=77.5
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HH
Q 017806 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 208 (365)
+..|+|.+|++.|+.+....|.. ..+...||.+|+..++ |++|+..+++.|+++|.++ -+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~--------------y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD--------------YEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCCCccHH
Confidence 44567888888888887777653 5688999999999999 9999999999999999864 57
Q ss_pred HHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 209 FYNWAIAISDRAKMRGR--------TKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~--------~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
++..|.++.. +.. .+.-.+....|...|++.+...|++..+
T Consensus 87 ~Y~~gL~~~~----~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYE----QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHH----HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8899998888 543 1111122344558899999999987543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-05 Score=65.63 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=130.5
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVL 168 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 168 (365)
....+...+..-|.++. ..|++++|.........+... +..+..+++-|....++...++.+. .+..||..+
T Consensus 103 ~~~sn~i~~l~aa~i~~-~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~aw 179 (299)
T KOG3081|consen 103 TDGSNLIDLLLAAIIYM-HDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAW 179 (299)
T ss_pred ccchhHHHHHHhhHHhh-cCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHH
Confidence 33344455556677774 999999999999886555533 5667788999999999998886554 345566655
Q ss_pred HHh--cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 169 QES--ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 169 ~~~--~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
... |. +.+..|.-.|+..-+..|..+...+..+.++.. +|+|++|. ..++.++..
T Consensus 180 v~la~gg------------ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe-------~lL~eaL~k 236 (299)
T KOG3081|consen 180 VKLATGG------------EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAE-------SLLEEALDK 236 (299)
T ss_pred HHHhccc------------hhhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHH-------HHHHHHHhc
Confidence 543 32 338999999999999888899999999999999 99999999 669999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH-HHHHHHHHhCCCCHHH
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI-SKFRAAIQLQFDFHRA 297 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~ 297 (365)
++++++++.|+-.+-...|.. .++. +...+....+|+++.+
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd----------~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKD----------AEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHhcCCcchHH
Confidence 999999999999999999986 4444 4455555667877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-05 Score=67.74 Aligned_cols=201 Identities=15% Similarity=0.041 Sum_probs=140.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHH---------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIE--------- 152 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~--------- 152 (365)
.+..|.+-.++..+|.||+ ...++..|.+.|++.-.+.|. ..+..+.+..|+........
T Consensus 37 ~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l 115 (459)
T KOG4340|consen 37 LERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL 115 (459)
T ss_pred HhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence 6788888999999999996 999999999999999999887 22223445555544332221
Q ss_pred ---------------------hCC--CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH
Q 017806 153 ---------------------RNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209 (365)
Q Consensus 153 ---------------------~~p--~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 209 (365)
.-| +.++...+.|.+.++.|+ |+.|++-|+.|++...-++..-
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq--------------yEaAvqkFqaAlqvsGyqpllA 181 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ--------------YEAAVQKFQAALQVSGYQPLLA 181 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecccc--------------HHHHHHHHHHHHhhcCCCchhH
Confidence 113 345555666666666666 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------------------------HHHHHHHHHHHHHh
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-------------------------PQALNNWGLALQEL 264 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-------------------------~~~~~~lg~~~~~~ 264 (365)
++++.++++ .|+++.|+++... ..++.++..|.. .++++..+.++++.
T Consensus 182 YniALaHy~----~~qyasALk~iSE---IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 182 YNLALAHYS----SRQYASALKHISE---IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred HHHHHHHHh----hhhHHHHHHHHHH---HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 999999999 9999999954322 233333333321 24556667777888
Q ss_pred cCcchhHH-------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 265 SAIVPARE-------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 265 ~~~~~~~~-------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
++++.|.+ ..+++-+..+-++=.++++|--.+.+-|+-.+|++..-...+
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 88755554 224455566666667777886677788877777766544433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.8e-06 Score=62.50 Aligned_cols=83 Identities=23% Similarity=0.191 Sum_probs=73.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC----HHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAFY 210 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~ 210 (365)
...|+++.|++.|.++|.+-|.++.+|+|++.++.-.|+ .++|+..+.+++++.... ..++.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--------------~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD--------------DEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--------------hHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 344779999999999999999999999999999999999 999999999999996543 46789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
..|.+|.. +|+.+.|...|+.
T Consensus 120 QRg~lyRl----~g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 120 QRGLLYRL----LGNDDAARADFEA 140 (175)
T ss_pred HHHHHHHH----hCchHHHHHhHHH
Confidence 99999999 9999999944433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-05 Score=81.67 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~ 265 (365)
+++|...|++. +.+...|+.+...|.. .|+.++|+ ..|++..+ ..|+. .++..+-.++.+.|
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~----~G~~~~A~-------~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g 603 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVA----HGKGSMAV-------ELFNRMVESGVNPDE-VTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCCc-ccHHHHHHHHhhcC
Confidence 56665555553 3445566666666666 66666666 44554443 23443 33444445566666
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQL---QFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
. +++|..+|++..+. .| +...|..+..++.+.|+..++.....
T Consensus 604 ~----------v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 604 M----------VTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred h----------HHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6 49999999988743 34 35778888999999998877765543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.9e-05 Score=60.44 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=94.0
Q ss_pred hhhhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYN 211 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 211 (365)
...|++.+|..+|++++. +..+++..+..+++..+..++ +..|...+++..+.+|. .++....
T Consensus 100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~--------------~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE--------------FAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHhhcCCccCCCCchHH
Confidence 445889999999999887 567889999999999999999 99999999999999886 6788888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+|.++.. .|++.+|. ..|+.++...|+ +.+-..++..+..+|+.
T Consensus 166 ~aR~laa----~g~~a~Ae-------safe~a~~~ypg-~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 166 FARTLAA----QGKYADAE-------SAFEVAISYYPG-PQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHHHHh----cCCchhHH-------HHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence 9999999 99999999 668888877775 67888899999999986
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.9e-05 Score=63.82 Aligned_cols=169 Identities=15% Similarity=0.099 Sum_probs=129.0
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCHH---H
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDYD---A 160 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~---~ 160 (365)
..+..|+..|...+ +.|++++|+..|+......|. +.++.++++.|+...++-+.++|.++. +
T Consensus 32 ~p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 32 LPASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 34577899999885 999999999999999988876 467779999999999999999987754 5
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HH--------------HHHHHHHHHHHHHhc
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DA--------------FYNWAIAISDRAKMR 223 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~--------------~~~lg~~~~~~~~~~ 223 (365)
++..|.+++..=+ ........-.+|+..|+..+...|++. ++ -...|..|.+ .
T Consensus 111 ~YlkgLs~~~~i~------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k----r 180 (254)
T COG4105 111 YYLKGLSYFFQID------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK----R 180 (254)
T ss_pred HHHHHHHHhccCC------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 7777888665432 445556668899999999999999852 11 2235555666 7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
|.+..|+ ..++.+++.-|+ -.+++..+..+|..+|-. ++| +-..++|..+..+
T Consensus 181 ~~~~AA~-------nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~----------~~a-~~~~~vl~~N~p~ 236 (254)
T COG4105 181 GAYVAAI-------NRFEEVLENYPDTSAVREALARLEEAYYALGLT----------DEA-KKTAKVLGANYPD 236 (254)
T ss_pred cChHHHH-------HHHHHHHhccccccchHHHHHHHHHHHHHhCCh----------HHH-HHHHHHHHhcCCC
Confidence 7777777 667777776655 357889999999999985 665 4456777776443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-05 Score=81.34 Aligned_cols=194 Identities=14% Similarity=0.031 Sum_probs=136.4
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC-------
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE------- 156 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~------- 156 (365)
.++..+|.++. ..|++++|..++.+++..... .+...|+++.|...+.+++.+...
T Consensus 492 ~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 492 VATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 35667788884 899999999999998865321 234569999999999998886221
Q ss_pred -CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 157 -DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 157 -~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
....+..+|.++...|+ +++|...+++++.+... ...++..+|.++.. .|++++|.
T Consensus 571 ~~~~~~~~la~~~~~~G~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~ 632 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWAR--------------LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNAR 632 (903)
T ss_pred HHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHH
Confidence 23345678888999999 99999999999886332 35567778999999 99999999
Q ss_pred HHHHHHHHHHHHHH--------------------------------hcCC--CC----HHHHHHHHHHHHHhcCcchhHH
Q 017806 231 ELWKQATKNYEKAV--------------------------------QLNW--NS----PQALNNWGLALQELSAIVPARE 272 (365)
Q Consensus 231 ~~~~~A~~~~~~al--------------------------------~~~p--~~----~~~~~~lg~~~~~~~~~~~~~~ 272 (365)
..++++...+...- ...+ .. ...+..+|.++...|++
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~----- 707 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF----- 707 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH-----
Confidence 88777654332110 0000 00 01134666777777774
Q ss_pred hhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 273 KQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
++|+..|++++... .....++..+|.++...|+...+......+.
T Consensus 708 -----~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 708 -----DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred -----HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999863 1234678889999999998776655544333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.7e-05 Score=81.00 Aligned_cols=189 Identities=11% Similarity=-0.052 Sum_probs=138.2
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh--------h-----------hhhhhhhHHHHHHHHHHHHHhCCCC--
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDE--------E-----------GRSRQRILTFAAKRYANAIERNPED-- 157 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~--------~-----------~~~~~~~~~~A~~~~~~al~~~p~~-- 157 (365)
+.....++.++. ..|++++|..++..+....+ . .....|++++|...+++++...+..
T Consensus 409 ~~l~~~~a~~~~-~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 409 PRLVLLQAWLAQ-SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred cchHHHHHHHHH-HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 344455566663 88999999999988754311 1 1335689999999999999865543
Q ss_pred ---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHH
Q 017806 158 ---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKE 228 (365)
Q Consensus 158 ---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~ 228 (365)
..++..+|.++...|+ +++|...+++++..... ...++.++|.++.. .|++++
T Consensus 488 ~~~~~a~~~lg~~~~~~G~--------------~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----~G~~~~ 549 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGE--------------LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----QGFLQA 549 (903)
T ss_pred HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----CCCHHH
Confidence 2356788999999999 99999999999976432 13466788999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHH
Q 017806 229 AEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-----FHRAIYNLG 302 (365)
Q Consensus 229 A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg 302 (365)
|...+++++...+..-.. .+.....+..+|.++...|++ ++|...+++++.+... ...++..+|
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL----------DEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 998887777665553210 122234567889999999996 9999999999876321 245667788
Q ss_pred HHHHHhhhhhhhhc
Q 017806 303 TVLYGLAEDTLRTG 316 (365)
Q Consensus 303 ~~~~~~g~~~~a~~ 316 (365)
.++...|+...+..
T Consensus 620 ~~~~~~G~~~~A~~ 633 (903)
T PRK04841 620 KISLARGDLDNARR 633 (903)
T ss_pred HHHHHcCCHHHHHH
Confidence 88888887665543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.7e-07 Score=82.25 Aligned_cols=105 Identities=21% Similarity=0.160 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
.+.|+.|+..|.+||+++|+++..+.+++.++.+ .+++..|+ ..+.++++++|....+|+..|.+.+.+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al-------~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGAL-------HDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHH-------HHHHhhhhcCchhhheeeeccHHHHhH
Confidence 3449999999999999999999999999999999 99999999 889999999999999999999999999
Q ss_pred cCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
+.+ .+|...|++...+.|+++.+...+-.|-....+
T Consensus 86 ~~~----------~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 86 GEF----------KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHH----------HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 996 999999999999999999998888887665544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.4e-06 Score=52.99 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+.+|..+|.+|..+|+ +++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~--------------~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ--------------PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999 999999999999999999999999885
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.1e-06 Score=53.19 Aligned_cols=43 Identities=26% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
+.+|..+|.+|..+|++ ++|++.|+++++.+|+++.+|..||.
T Consensus 1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46899999999999997 99999999999999999999999885
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.9e-06 Score=50.71 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 194 KYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 194 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
+|+++|+++|+++.+|++||.+|.. .|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence 4899999999999999999999999 99999986
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00035 Score=60.45 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=110.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+...+++++|.+...+. .+-++...--.++.++.+ ++-|...+++..+++.+ ..+..|+
T Consensus 118 ~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r--------------~d~A~~~lk~mq~ided--~tLtQLA 176 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR--------------FDLAEKELKKMQQIDED--ATLTQLA 176 (299)
T ss_pred hhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHccchH--HHHHHHH
Confidence 34457888888877663 334455555567777777 99999999999887744 4556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
.++...+--.+++.+|. -.|+..-+.-|-.+...+..+.|...++++ ++|...++.+|..+++
T Consensus 177 ~awv~la~ggek~qdAf-------yifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAF-------YIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHHhccchhhhhHH-------HHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccCC
Confidence 66665333345566666 778887775666789999999999999996 9999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q 017806 294 FHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~~~ 312 (365)
+++.+.|+-.+-..+|.+.
T Consensus 240 dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDA 258 (299)
T ss_pred CHHHHHHHHHHHHHhCCCh
Confidence 9999999999999999775
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-06 Score=78.99 Aligned_cols=106 Identities=25% Similarity=0.232 Sum_probs=95.2
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..+.|+.|+..|.++|+++|+++..+-+++.++...++ |..|+..+.+|++++|....+|+..|.
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--------------~~~Al~Da~kaie~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--------------FGGALHDALKAIELDPTYIKAYVRRGT 80 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeech--------------hhhHHHHHHhhhhcCchhhheeeeccH
Confidence 445779999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+... .+++.+|. ..|++...+.|+++.+...+-.|-....
T Consensus 81 a~m~----l~~~~~A~-------~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 81 AVMA----LGEFKKAL-------LDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHh----HHHHHHHH-------HHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 9999 99999999 8899999999999988877766654433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=61.94 Aligned_cols=135 Identities=17% Similarity=0.204 Sum_probs=110.6
Q ss_pred hhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH----hCC--CCHH
Q 017806 135 SRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----LCP--TLHD 207 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~----~~p--~~~~ 207 (365)
...|+|.-.+..+.++++.+ |..+.....||.+..+.|+ .+.|..+|++.-+ ++. .+..
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD--------------~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD--------------IKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHHhhhhccchhHH
Confidence 33488999999999999998 6788888999999999999 8888888885432 222 2445
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
...+.+.++.- .+++.+|. ..|.+.+..||.++.+.++.+.|+..+|+. ..|++..+.+
T Consensus 254 V~~n~a~i~lg----~nn~a~a~-------r~~~~i~~~D~~~~~a~NnKALcllYlg~l----------~DAiK~~e~~ 312 (366)
T KOG2796|consen 254 VLMNSAFLHLG----QNNFAEAH-------RFFTEILRMDPRNAVANNNKALCLLYLGKL----------KDALKQLEAM 312 (366)
T ss_pred HHhhhhhheec----ccchHHHH-------HHHhhccccCCCchhhhchHHHHHHHHHHH----------HHHHHHHHHH
Confidence 67777778877 78888888 779999999999999999999999999997 9999999999
Q ss_pred HHhCCCCH---HHHHHHHHH
Q 017806 288 IQLQFDFH---RAIYNLGTV 304 (365)
Q Consensus 288 l~~~p~~~---~~~~~lg~~ 304 (365)
++..|... ...+||-..
T Consensus 313 ~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 313 VQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred hccCCccchhhhHHHHHHHH
Confidence 99999753 234444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-06 Score=49.28 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 146 RYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 146 ~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
+|+++|+++|+++.+|+++|.+|...|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~ 28 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD 28 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence 4889999999999999999999999999
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.9e-05 Score=70.71 Aligned_cols=146 Identities=15% Similarity=0.027 Sum_probs=115.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH-HHhCCC--------CH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA-TRLCPT--------LH 206 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~ 206 (365)
...++..+..-.+.++....+.+.+++..+..++..|+ +..|.+.+-.. +...|. ..
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn--------------~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN--------------HPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------------hHHHHHHHHhcccccccCccccchhhhh
Confidence 34566666666667777777888999999999999999 99998877553 333333 34
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHhcCcchhHHhhh
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-----------WNSPQALNNWGLALQELSAIVPAREKQT 275 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 275 (365)
..|+|+|.+++. .|.|.-++.+|.+|+..+-.-+... .+..++.+|.|..|...|++
T Consensus 284 if~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP-------- 351 (696)
T KOG2471|consen 284 IFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP-------- 351 (696)
T ss_pred eeecCcceEeee----hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc--------
Confidence 568999999999 9999999988888875333323222 23568999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
-.|.++|.+++.....+|..|..|+.|+..-.
T Consensus 352 --l~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 352 --LLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred --HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.3e-05 Score=64.14 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLH----------DAFYNWAIAISDR 219 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~lg~~~~~~ 219 (365)
..++...|+-++..|+ |.+|+..|+.|+.+ .|..+ ..+.|...++..
T Consensus 178 v~~l~q~GN~lfk~~~--------------ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~- 242 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGR--------------YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK- 242 (329)
T ss_pred hHHHHHhhhhhhhhcc--------------HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-
Confidence 4567888888999998 99999999999754 34443 457788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
.|+|-+++ .+....+..+|++..+++.+|.+...-=+. .+|...|.++|+++|.-..+
T Consensus 243 ---~~e~yevl-------eh~seiL~~~~~nvKA~frRakAhaa~Wn~----------~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 243 ---KEEYYEVL-------EHCSEILRHHPGNVKAYFRRAKAHAAVWNE----------AEAKADLQKVLELDPSLASV 300 (329)
T ss_pred ---HHHHHHHH-------HHHHHHHhcCCchHHHHHHHHHHHHhhcCH----------HHHHHHHHHHHhcChhhHHH
Confidence 99999999 889999999999999999999999988886 99999999999999976544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0014 Score=55.68 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=99.5
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCccccCCCCchhh
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP------EDYDALYNWALVLQESADNVSLDSTSPSKD 185 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~ 185 (365)
-.+++++|.++|.++-.. +-..+++..|=..|.++..+.- +-...+...+.+|.. .+
T Consensus 26 g~~k~eeAadl~~~Aan~----yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~------------ 88 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANM----YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VD------------ 88 (288)
T ss_pred CCcchHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cC------------
Confidence 445799999999988654 3334678888888888866531 124455666666655 46
Q ss_pred hHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
..+|+.++++++++..+.. ..+..+|.+|.. .+.+++.||..|++|-.+|..- +....--..+.-.+.
T Consensus 89 --~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae~yk~e-es~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 89 --PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAEYYKGE-ESVSSANKCLLKVAQ 162 (288)
T ss_pred --hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHHHHcch-hhhhhHHHHHHHHHH
Confidence 9999999999999876533 335577777765 1477777776666665555421 111111123333333
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
.-..+++ |.+|+..|+++....-++.-.-+.
T Consensus 163 yaa~leq----------Y~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 163 YAAQLEQ----------YSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHhccchHHHhH
Confidence 4444555 699999999999877666544333
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=62.56 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
....+.|...|+...|+ |-++++++...+...|.|..+++.+|.+... .=+.++|.
T Consensus 229 ~tpLllNy~QC~L~~~e--------------~yevleh~seiL~~~~~nvKA~frRakAhaa----~Wn~~eA~------ 284 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEE--------------YYEVLEHCSEILRHHPGNVKAYFRRAKAHAA----VWNEAEAK------ 284 (329)
T ss_pred hhHHHHhHHHHHhhHHH--------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh----hcCHHHHH------
Confidence 45578899999999999 9999999999999999999999999999988 77788888
Q ss_pred HHHHHHHHhcCCCCHHHH
Q 017806 237 TKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~ 254 (365)
..|.++++++|.-..+.
T Consensus 285 -~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 285 -ADLQKVLELDPSLASVV 301 (329)
T ss_pred -HHHHHHHhcChhhHHHH
Confidence 88999999999765543
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0073 Score=52.36 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=111.1
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 191 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A 191 (365)
-..+|.+++.+|+.++..+... ..|++.-..+|.++|.+..+|..+-.++..++. .+.+-
T Consensus 38 Yte~fr~~m~YfRAI~~~~E~S-------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------------dL~~E 97 (318)
T KOG0530|consen 38 YTEDFRDVMDYFRAIIAKNEKS-------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------------DLNKE 97 (318)
T ss_pred echhHHHHHHHHHHHHhccccC-------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------------HHHHH
Confidence 3456677777777766655433 346666677777777777777777777666553 25666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchh
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK-EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~-~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 270 (365)
++++...++-+|.|..+|..+-.+... .|+.. .-+ .....++..+.++--+|..+-.+....+.++.-
T Consensus 98 l~~l~eI~e~npKNYQvWHHRr~ive~----l~d~s~rEL-------ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 98 LEYLDEIIEDNPKNYQVWHHRRVIVEL----LGDPSFREL-------EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHH----hcCcccchH-------HHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence 777777777777777777777666666 66555 222 455666666666666666666666666665322
Q ss_pred HH------------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 271 RE------------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 271 ~~------------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
.. .....+.-+.+..+.|.+.|+|-.+|..|.-++..
T Consensus 167 L~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 167 LAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 22 22455677888899999999999999999888775
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=46.85 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
+.+|+++|.++..+|+ +++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD--------------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC--------------chHHHHHHHHHHHHCcCC
Confidence 4689999999999999 999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.9e-05 Score=66.61 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
-+..-|+-|+...+ |..|+.+|.++|..... ++-+|+|++.+... .|+|..++
T Consensus 83 n~KeeGN~~fK~Kr--------------yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l----- 139 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKR--------------YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSAL----- 139 (390)
T ss_pred HHHHHhHHHHHhhh--------------HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHH-----
Confidence 35556777777777 99999999999997543 56679999999999 99999998
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
..+.+++.++|++..++++-+.|+..+.++ .+|..+++..++++-..
T Consensus 140 --~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~----------~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 140 --NDCSAALKLKPTHLKAYIRGAKCLLELERF----------AEAVNWCEEGLQIDDEA 186 (390)
T ss_pred --HHHHHHHhcCcchhhhhhhhhHHHHHHHHH----------HHHHHHHhhhhhhhHHH
Confidence 889999999999999999999999999996 99999999888776543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00096 Score=60.22 Aligned_cols=162 Identities=13% Similarity=0.116 Sum_probs=126.3
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------hhhhhhhHHHHHHHHHHHHHhCCCC------
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------GRSRQRILTFAAKRYANAIERNPED------ 157 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~A~~~~~~al~~~p~~------ 157 (365)
-+++.+++..+ +...++.+++.+....+.+... +....+.|+++++.|+.++++.-++
T Consensus 83 ~ea~lnlar~~-e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 83 LEAYLNLARSN-EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHH-HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 46788888888 6889999999999988877633 2344578999999999999975443
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHHHhcCCHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----------LHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
-.+...||.++..+.+ +++|.-+..+|.++-.. ...+.+.++.++.. +|+..
T Consensus 162 lqvcv~Lgslf~~l~D--------------~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~----~G~Lg 223 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKD--------------YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL----LGRLG 223 (518)
T ss_pred eehhhhHHHHHHHHHh--------------hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH----hcccc
Confidence 2367889999999999 99999999999987432 24567888999988 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.|.++.++|.+.--. ....+.++..+.-+|.+|...|+. +.|..-|++|...
T Consensus 224 dA~e~C~Ea~klal~-~Gdra~~arc~~~~aDIyR~~gd~----------e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 224 DAMECCEEAMKLALQ-HGDRALQARCLLCFADIYRSRGDL----------ERAFRRYEQAMGT 275 (518)
T ss_pred cHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHhcccH----------hHHHHHHHHHHHH
Confidence 999777666543211 111234667888899999999997 8999999998865
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00037 Score=62.79 Aligned_cols=148 Identities=9% Similarity=-0.009 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------
Q 017806 137 QRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------ 205 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------ 205 (365)
.-++.+++.+.+-.+.+-..+ ..+...+|.++..++- |+++++.|++|+.+..++
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~--------------fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV--------------FQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH--------------HHHHHHHHHHHHHHhhccCCceee
Confidence 356677777766666653222 3456778888888888 999999999999985432
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN----SPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
..++..||.++.. +.++++|.-+..+|....+. +.++.- ..-+++.++.+|..+|+. -.|.
T Consensus 162 lqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s-~~l~d~~~kyr~~~lyhmaValR~~G~L----------gdA~ 226 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNS-YGLKDWSLKYRAMSLYHMAVALRLLGRL----------GDAM 226 (518)
T ss_pred eehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHh-cCcCchhHHHHHHHHHHHHHHHHHhccc----------ccHH
Confidence 3578899999999 99999999665555443332 222211 245778899999999997 8999
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHhhhhhh
Q 017806 282 SKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 282 ~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
++++++.++. +-++..+.-+|.+|-..|+.+.
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 9999998773 3446667778999988887664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0046 Score=64.71 Aligned_cols=194 Identities=6% Similarity=-0.082 Sum_probs=147.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh---h--------hhhh----hhhHHHHHHHHHHHHHhCCC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE---E--------GRSR----QRILTFAAKRYANAIERNPE 156 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~---~--------~~~~----~~~~~~A~~~~~~al~~~p~ 156 (365)
+-.+|+..-.|...=...+ +.++.++|...+++|+..-. . ++.. -|.-+.-.+.|++|.+.. +
T Consensus 1451 vrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d 1528 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D 1528 (1710)
T ss_pred HhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c
Confidence 3567777766655444443 88999999999999987651 1 1111 155556666777777653 2
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
-..+|..|.-+|..-+. +++|.+.|+..++........|..+|..+.. +.+-+.|.
T Consensus 1529 ~~~V~~~L~~iy~k~ek--------------~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~------ 1584 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEK--------------NDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAAR------ 1584 (1710)
T ss_pred hHHHHHHHHHHHHHhhc--------------chhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHH------
Confidence 34567888889999888 9999999999999988888999999999988 88777888
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 237 TKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 237 ~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
..+.+|++.-|+ +.+.....+.+-++.|+. +.+...|+-.+..+|.-...|.-+...-.+.|+....
T Consensus 1585 -~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa----------eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1585 -ELLKRALKSLPKQEHVEFISKFAQLEFKYGDA----------ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred -HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc----------hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 557777777777 788888899999999997 9999999999999999888888877777777765544
Q ss_pred hcCcCCCC
Q 017806 315 TGGTVNPR 322 (365)
Q Consensus 315 ~~~~~~~~ 322 (365)
...+..++
T Consensus 1654 R~lfeRvi 1661 (1710)
T KOG1070|consen 1654 RDLFERVI 1661 (1710)
T ss_pred HHHHHHHH
Confidence 44443333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.9e-05 Score=46.46 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.+|+++|.++..+|++ ++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence 46899999999999996 99999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.8e-05 Score=45.02 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
+.+|+.+|.++..+|+ +++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN--------------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCcCC
Confidence 4679999999999999 999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00087 Score=63.07 Aligned_cols=183 Identities=19% Similarity=0.083 Sum_probs=119.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC-----------
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP----------- 203 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p----------- 203 (365)
.+..+.+.-++...+||+++|+.+++|..|+.-... . ..++...|+++++...
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~--T--------------i~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEAS--T--------------IVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc--C--------------HHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 345667888999999999999999999888763322 2 5566666666654311
Q ss_pred ------------C--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCc
Q 017806 204 ------------T--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAI 267 (365)
Q Consensus 204 ------------~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~ 267 (365)
. ...+...||.+..+ +|+.++|+ +.++..++.+|. +..+..+|-.++..++.+
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCark----lGr~~EAI-------k~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARK----LGRLREAI-------KMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHH----hCChHHHH-------HHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 0 12345678888888 99999999 779999988775 567999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCcc
Q 017806 268 VPAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 346 (365)
.++...+.+-=++ -|+.+...+.-+....+...+..... .+...........+...+.+|.+.+|.
T Consensus 312 ----------ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e---~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 312 ----------ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE---AASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred ----------HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch---hhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 8887777774322 24555555555444333221110000 001111111225567778899999998
Q ss_pred HHHHHHHHHhh
Q 017806 347 YSVYSSALRLV 357 (365)
Q Consensus 347 ~~~~~~al~~~ 357 (365)
-+.|.--.|-+
T Consensus 379 Vp~YLLe~K~L 389 (539)
T PF04184_consen 379 VPKYLLEMKSL 389 (539)
T ss_pred CchhhhccCCC
Confidence 88877655543
|
The molecular function of this protein is uncertain. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.5e-06 Score=72.29 Aligned_cols=89 Identities=20% Similarity=0.166 Sum_probs=83.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..|.+++|+++|..+|+++|.....+..++.++..+++ ...||..|..+++++|+...-|-..|.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--------------p~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--------------PNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccC--------------CchhhhhhhhhhccCcccccccchhhHH
Confidence 34679999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
... +|+|.+|. ++++.+.+++-+
T Consensus 192 ~rl----lg~~e~aa-------~dl~~a~kld~d 214 (377)
T KOG1308|consen 192 ERL----LGNWEEAA-------HDLALACKLDYD 214 (377)
T ss_pred HHH----hhchHHHH-------HHHHHHHhcccc
Confidence 999 99999999 778888888754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0011 Score=53.40 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=83.2
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhh----hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQ----RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~ 187 (365)
..|+...++..+++++.+....+... .-.......+... ...+...++..+...|+
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~-------------- 77 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLREL------YLDALERLAEALLEAGD-------------- 77 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT---------------
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccC--------------
Confidence 56788889999999988876533222 1222333333332 34567888888999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+++|+..+++++.++|.+..+|..+-.++.. .|+..+|+..|++....+.+-+.+.|.
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 9999999999999999999999999999999 999999999999988888888888886
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.5e-05 Score=44.67 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.+|+.+|.++..+|++ ++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence 46899999999999996 99999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=61.42 Aligned_cols=160 Identities=12% Similarity=0.082 Sum_probs=110.3
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
-+...|...|..= ..++++..|...|++|+..+.. .-++.+....|...+.+|+.+-|..-..|+-.-.
T Consensus 71 ~~~~~WikYaqwE-esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 71 LNMQVWIKYAQWE-ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3445555556555 4677777777777777776643 2344466777777777777777777777777777
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
+-..+|+ ...|.+.|++-++..|+. .+|...-..-.. -...+.|. ..|++-+-.
T Consensus 150 mEE~LgN--------------i~gaRqiferW~~w~P~e-qaW~sfI~fElR----ykeieraR-------~IYerfV~~ 203 (677)
T KOG1915|consen 150 MEEMLGN--------------IAGARQIFERWMEWEPDE-QAWLSFIKFELR----YKEIERAR-------SIYERFVLV 203 (677)
T ss_pred HHHHhcc--------------cHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH----hhHHHHHH-------HHHHHHhee
Confidence 7777777 777777777777777753 445554444444 55555665 668887777
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.|+ ...|...+..-.+.|+. .-|.+.|++|++.-.++
T Consensus 204 HP~-v~~wikyarFE~k~g~~----------~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 204 HPK-VSNWIKYARFEEKHGNV----------ALARSVYERAIEFLGDD 240 (677)
T ss_pred ccc-HHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHhhhH
Confidence 774 67788888888888875 88888888888765443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00073 Score=66.86 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=83.3
Q ss_pred CChhHhhhcHHHHHHHHHHhhccChh--------hhhhhhhHHHHHHHHHHH----------HHhCC----------CCH
Q 017806 107 NTPHQLAEQNNAAMELINSVTGVDEE--------GRSRQRILTFAAKRYANA----------IERNP----------EDY 158 (365)
Q Consensus 107 ~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~ 158 (365)
..| +..|.+++|.++-+.--...-. -....+|.+.|+++|+++ |.-+| .+.
T Consensus 834 Kly-Qs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 834 KLY-QSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HHH-HhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence 344 4566666666554432222111 112236677777777754 22232 356
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---------------------CPTLHDAFYNWAIAIS 217 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~lg~~~~ 217 (365)
..|.+.|..+...|+ .+.|+.+|..|-.- ...+-.+.+.||..|.
T Consensus 913 ~L~~WWgqYlES~Ge--------------mdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGE--------------MDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHHHhcccc--------------hHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 788899999999999 89999988887532 3346678999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
. .|++.+|+..|.+| +.|..||++..
T Consensus 979 n----~g~v~~Av~FfTrA-qafsnAIRlcK 1004 (1416)
T KOG3617|consen 979 N----DGDVVKAVKFFTRA-QAFSNAIRLCK 1004 (1416)
T ss_pred h----hHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9 99999999999998 66888887753
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0011 Score=50.08 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 186 ALLEEACKKYDEATRLCPT------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
|.|++|...|++++++... ++-++-.|+.++.. +|+|++++..-+.|+.+|++-=+++.+....
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 4499999999999987432 34578889999999 9999999999999999999998888776554
Q ss_pred ----HHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 254 ----LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 254 ----~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.++.+.++..+|+. ++|+..|+++.++
T Consensus 99 WIaaVfsra~Al~~~Gr~----------~eA~~~fr~agEM 129 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRK----------EEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHH
Confidence 45788999999996 9999999998765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00062 Score=64.04 Aligned_cols=177 Identities=15% Similarity=0.066 Sum_probs=111.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE--DYDALYNWALVLQ 169 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~ 169 (365)
++.+|+-+.+|..++.- ......+|.++|+++++.....+.+.. ..+....+-..+..... ...+...+|.|..
T Consensus 195 Lei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~-~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar 270 (539)
T PF04184_consen 195 LEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQ-FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR 270 (539)
T ss_pred HHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhh-hhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence 67788888888888742 334567888888888776655432211 11111111112211111 2456688999999
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL- 246 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~- 246 (365)
++|+ .++||+.|+..++..|. +..++.+|-.++.. .++|.++..+ +.+-=++
T Consensus 271 klGr--------------~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~l-------L~kYdDi~ 325 (539)
T PF04184_consen 271 KLGR--------------LREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQAL-------LAKYDDIS 325 (539)
T ss_pred HhCC--------------hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHH-------HHHhcccc
Confidence 9999 99999999999988775 56789999999999 9999999844 3332111
Q ss_pred CCCCHHHHHHHHHHHHHh-cCc--chhHHhhh---HHHHHHHHHHHHHHhCCCCHHH
Q 017806 247 NWNSPQALNNWGLALQEL-SAI--VPAREKQT---IVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~-~~~--~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~ 297 (365)
-|+++...+..+.+..+. ++. .++..+.| .-..|++...+|++.||.-+.-
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 255666655555544331 111 00001111 1245788999999999987653
|
The molecular function of this protein is uncertain. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0004 Score=60.01 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
.+.+.+..++.-+++ |.-....+.+.++.+ |..+.....||.+-.+ .|+.+.|..+|+...
T Consensus 178 ~Vmy~~~~~llG~kE--------------y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKE--------------YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHHHhcchh--------------hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHH
Confidence 355677777777788 999999999999998 6689999999999999 999999996655443
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+.-.+. .--...--+..+.+.++.-.+++ ..|...|.+.+..||.++.+.++.+.|+..+|+...++..
T Consensus 240 k~~~kL-~~~q~~~~V~~n~a~i~lg~nn~----------a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 240 KVTQKL-DGLQGKIMVLMNSAFLHLGQNNF----------AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHhhh-hccchhHHHHhhhhhheecccch----------HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 322221 11123445666777777777775 9999999999999999999999999999999988777665
Q ss_pred cCCCCCCCcc
Q 017806 318 TVNPREVSPN 327 (365)
Q Consensus 318 ~~~~~~~~~~ 327 (365)
...+....|.
T Consensus 309 ~e~~~~~~P~ 318 (366)
T KOG2796|consen 309 LEAMVQQDPR 318 (366)
T ss_pred HHHHhccCCc
Confidence 5444444444
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00027 Score=62.92 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=76.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 131 EEGRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
++-++..++|..|+.+|.++|+..-.+ ...|.|++.+...+|+ |..|+..+.+++.++|++.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--------------yRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--------------YRSALNDCSAALKLKPTHL 153 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHhcCcchh
Confidence 345677889999999999999976444 5578999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+++.-+.++.. +.++.+|....+.
T Consensus 154 Ka~~R~Akc~~e----Le~~~~a~nw~ee 178 (390)
T KOG0551|consen 154 KAYIRGAKCLLE----LERFAEAVNWCEE 178 (390)
T ss_pred hhhhhhhHHHHH----HHHHHHHHHHHhh
Confidence 999999999999 9999999854433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0018 Score=58.48 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
.+..+.|...|.++++..+....+|...|.+-+.. ++ .+.|...|+.+++..|.+...|......
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d--------------~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD--------------PKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS---------------HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34588899999999866666788899999987774 55 6669999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
+.. .|+.+.+. ..|++++..-|... .+|..+...-...|+. +...+.++++.+.-|
T Consensus 80 l~~----~~d~~~aR-------~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl----------~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 80 LIK----LNDINNAR-------ALFERAISSLPKEKQSKKIWKKFIEFESKYGDL----------ESVRKVEKRAEELFP 138 (280)
T ss_dssp HHH----TT-HHHHH-------HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H----------HHHHHHHHHHHHHTT
T ss_pred HHH----hCcHHHHH-------HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhh
Confidence 999 99999998 66777776655543 6888888888888886 899999999999988
Q ss_pred CCHHHH
Q 017806 293 DFHRAI 298 (365)
Q Consensus 293 ~~~~~~ 298 (365)
++....
T Consensus 139 ~~~~~~ 144 (280)
T PF05843_consen 139 EDNSLE 144 (280)
T ss_dssp TS-HHH
T ss_pred hhhHHH
Confidence 855443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0083 Score=58.20 Aligned_cols=171 Identities=12% Similarity=0.116 Sum_probs=128.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhcc-Chh---------------hhhhhhhHHHHHHHHHHHHHhCC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGV-DEE---------------GRSRQRILTFAAKRYANAIERNP 155 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~-~~~---------------~~~~~~~~~~A~~~~~~al~~~p 155 (365)
+..+|.+++-|..+-.++ .|+..+-+..|..|+.. +|. -+...|+++.|...|+++.+.+=
T Consensus 342 LRQn~~nV~eW~kRV~l~---e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY---EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhhhh---cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 678999999998877654 57888888889888764 443 13345999999999999999753
Q ss_pred -C---CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------------------CHHHHHHHH
Q 017806 156 -E---DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------------------LHDAFYNWA 213 (365)
Q Consensus 156 -~---~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~lg 213 (365)
. -..+|.+.|..-....+ ++.|..+.++|...-.. +..+|..+
T Consensus 419 ~~v~dLa~vw~~waemElrh~~--------------~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y- 483 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHEN--------------FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY- 483 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH-
Confidence 2 25678888877777777 99999999999865222 12234433
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-- 291 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-- 291 (365)
-+++++...|+..-..|.+.+.+.--.|....|.|..+....-+ +++.+.|++.+.+.
T Consensus 484 ----------~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----------eesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 484 ----------ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----------EESFKAYERGISLFKW 543 (835)
T ss_pred ----------HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----------HHHHHHHHcCCccCCC
Confidence 34555555555555889999998888899999999999888775 99999999999885
Q ss_pred CCCHHHHHH
Q 017806 292 FDFHRAIYN 300 (365)
Q Consensus 292 p~~~~~~~~ 300 (365)
|.-.++|..
T Consensus 544 p~v~diW~t 552 (835)
T KOG2047|consen 544 PNVYDIWNT 552 (835)
T ss_pred ccHHHHHHH
Confidence 444455554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.013 Score=56.87 Aligned_cols=158 Identities=15% Similarity=0.075 Sum_probs=122.1
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHhCCC---------
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIERNPE--------- 156 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~~p~--------- 156 (365)
..|...|..| ...|+.+.|...|++++...=. .-.+..+++.|+++.+++...-..
T Consensus 388 ~Lw~~faklY-e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLY-ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHH-HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 5688889999 6999999999999999987622 134457899999999988765211
Q ss_pred ---------CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 157 ---------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 157 ---------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
....|...+......|- ++.....|++.+.+.--.+....|.|..+.. ..-++
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gt--------------festk~vYdriidLriaTPqii~NyAmfLEe----h~yfe 528 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGT--------------FESTKAVYDRIIDLRIATPQIIINYAMFLEE----HKYFE 528 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hHHHH
Confidence 24467777888888888 9999999999999998899999999999988 88888
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH-HH-hcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 228 EAEELWKQATKNYEKAVQLN--WNSPQALNNWGLAL-QE-LSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~-~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
++. +.|++.+.+. |+-.++|+.+=.-. .+ .|.. .+.|..+|++||+..|
T Consensus 529 esF-------k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k---------lEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 529 ESF-------KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK---------LERARDLFEQALDGCP 581 (835)
T ss_pred HHH-------HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHhcCC
Confidence 888 7777777765 55566666432222 22 2322 5899999999999876
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0024 Score=54.39 Aligned_cols=128 Identities=15% Similarity=0.074 Sum_probs=88.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDA------LYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL- 205 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~- 205 (365)
.++..+..+|+.++++++++..+.... +..+|.+|... .+ +++||.+|+++-+-....
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d--------------~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQD--------------FEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHH--------------HHHHHHHHHHHHHHHcchh
Confidence 456678999999999999987655443 34778887764 66 999999999998764331
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCcchhHHh
Q 017806 206 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREK 273 (365)
Q Consensus 206 -----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~~~~ 273 (365)
..++...+..-.. .++|.+|+ ..|++.....-++ -..++.-|.|++-..+.
T Consensus 149 s~ssANKC~lKvA~yaa~----leqY~~Ai-------~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~------ 211 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQ----LEQYSKAI-------DIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADE------ 211 (288)
T ss_pred hhhhHHHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccH------
Confidence 2334444444455 66677776 6666665443333 24556678888887775
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHH
Q 017806 274 QTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 274 ~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
-.+...+++-.+++|....
T Consensus 212 ----v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 212 ----VNAQRALEKYQELDPAFTD 230 (288)
T ss_pred ----HHHHHHHHHHHhcCCcccc
Confidence 6777788888889997754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0028 Score=63.37 Aligned_cols=106 Identities=20% Similarity=0.079 Sum_probs=95.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..+++.+|.+...+.++..|+-.-+...-|.++.++|+ +++|..+++..-...+++-..+-.+-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk--------------~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK--------------GDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC--------------chhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 34789999999999999999999999999999999999 9999988888777788888899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
|.. +|++++|. ..|+++++.+|+ -..++.+=.+|.+.+.+
T Consensus 87 y~d----~~~~d~~~-------~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 87 YRD----LGKLDEAV-------HLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHH----HhhhhHHH-------HHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 999 99999999 779999999999 78888888888887775
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0058 Score=56.60 Aligned_cols=114 Identities=13% Similarity=-0.042 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hcCccccCCCCchhhhHHHHHHHHHHHHH-HhCCCCHHH
Q 017806 137 QRILTFAAKRYANAIER----NPEDYDALYNWALVLQE---SADNVSLDSTSPSKDALLEEACKKYDEAT-RLCPTLHDA 208 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~~~~~~a~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~ 208 (365)
.++|+.=+...+..-.+ -+....+.+..|.++.+ .|+ .++|+..+..++ ...+.+++.
T Consensus 154 iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd--------------re~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 154 IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD--------------REKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC--------------HHHHHHHHHHHHhccCCCChHH
Confidence 36777777777665555 35567778899999998 777 999999999954 456778999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+..+|.+|.+.+...+.- -.+.+++|+.+|.++.+++|+. ..-.|++.++...|..
T Consensus 220 ~gL~GRIyKD~~~~s~~~--d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFT--DRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCc
Confidence 999999998744332221 2334888899999999999654 4455677777776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0033 Score=56.67 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE-AEELWKQATK 238 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~-A~~~~~~A~~ 238 (365)
+|..+.....+.+. .+.|...|.+|++..+....+|...|.+... .++-.+ |. +
T Consensus 3 v~i~~m~~~~r~~g--------------~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~-------~ 57 (280)
T PF05843_consen 3 VWIQYMRFMRRTEG--------------IEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRAR-------K 57 (280)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHH-------H
T ss_pred HHHHHHHHHHHhCC--------------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHH-------H
Confidence 56666777777777 9999999999997777788999999999776 554444 88 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhhh
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAED 311 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~ 311 (365)
.|+.+++..|.+...|..+...+...++. +.|...|++++..-|... .+|......-...|+.
T Consensus 58 Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 58 IFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence 78888888899999999999999999996 999999999998876654 4555555555555533
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=2.4e-05 Score=69.84 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+++||++|.++|.++|..+..+..++.++.. +++...|+ +.|..+++++|+.+.-|-..|.+..-+|++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~ai-------rD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAI-------RDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeee----ccCCchhh-------hhhhhhhccCcccccccchhhHHHHHhhch
Confidence 9999999999999999999999999999999 99999999 889999999999999999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
++|..++..+.+++-+
T Consensus 199 ----------e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 ----------EEAAHDLALACKLDYD 214 (377)
T ss_pred ----------HHHHHHHHHHHhcccc
Confidence 9999999999988643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0049 Score=61.31 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=101.8
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhh--hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSR--QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE 189 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~ 189 (365)
.+|-.++|..+|++.-..+-...+. +|.+++|.+..+.--+++ --..|++.+.-+...++ .+
T Consensus 812 eLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D--------------i~ 875 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD--------------IE 875 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc--------------HH
Confidence 6677777777777766655443322 245555544333211111 13457788888888888 88
Q ss_pred HHHHHHHHHH----------HhCC----------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH------
Q 017806 190 EACKKYDEAT----------RLCP----------TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA------ 243 (365)
Q Consensus 190 ~A~~~~~~al----------~~~p----------~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a------ 243 (365)
.|+++|+++- .-+| .+...|.-.|..+.. .|+.+.|+.+|+.|-.+|..+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAALSFYSSAKDYFSMVRIKCIQ 951 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHHHHHHHHhhhhhhheeeEeec
Confidence 8888888762 2233 255678888999999 999999999999998777632
Q ss_pred --------HhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 244 --------VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 244 --------l~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
|.....+..+-+.+|..|...|+. .+|+..|.+|-.+
T Consensus 952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v----------~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDKAACYHLARMYENDGDV----------VKAVKFFTRAQAF 996 (1416)
T ss_pred cCchHHHHHHHhcccHHHHHHHHHHhhhhHHH----------HHHHHHHHHHHHH
Confidence 233456777888899999998886 8898888876543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.011 Score=53.66 Aligned_cols=171 Identities=23% Similarity=0.199 Sum_probs=120.3
Q ss_pred hhhcHHHHHHHHHHhhccChh------------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE------------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~ 179 (365)
..+.+..++.++..+-..... +.....+..+|+..|..+. ...++.+.+.||.+|..-.-
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g------ 124 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG------ 124 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC------
Confidence 667777888888777653211 1222367899999999544 46788899999999987220
Q ss_pred CCchhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 180 TSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIAISDRAKMRGRTKEAE-ELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~g~~~~A~-~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
...++.+|..+|+++.+..-.. ..+.+.+|.++.. -. ...++ ....+|+..|.++-... ++.+.+++
T Consensus 125 ----v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~----g~-~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~l 193 (292)
T COG0790 125 ----VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS----GL-QALAVAYDDKKALYLYRKAAELG--NPDAQLLL 193 (292)
T ss_pred ----cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc----Ch-hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHH
Confidence 0012999999999999875433 3558889988876 32 22122 12346778888887765 88999999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
|.+|..-.- -..++.+|+.+|.++.+... ..+.++++ ++...|.
T Consensus 194 g~~y~~G~G------v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 194 GRMYEKGLG------VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHHHcCCC------CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 988866311 12346999999999998876 88999999 7777773
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0043 Score=60.15 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=115.4
Q ss_pred hhcHHHHHHHHHHhhccChh-------------------hhh--hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 113 AEQNNAAMELINSVTGVDEE-------------------GRS--RQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~-------------------~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 171 (365)
.|+-+.++..+.++.....- .-. ...+.+.|.+.+....+..|+..-.++..|.++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 47888889888888774321 011 345788899999999999999999999999999999
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
|+ .++|++.|++++..... ..-+++.+|.++.. +++|++|. .+|.+.++.+
T Consensus 281 g~--------------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~-------~~f~~L~~~s 335 (468)
T PF10300_consen 281 GN--------------LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAA-------EYFLRLLKES 335 (468)
T ss_pred cC--------------HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHH-------HHHHHHHhcc
Confidence 99 99999999999854332 45678999999999 99999999 7788888765
Q ss_pred CC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 248 WN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 248 p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.- .+...+..|.|+...++. .......++|..+|.++-.+
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~---~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGRE---EEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccc---hhhhhhHHHHHHHHHHHHHH
Confidence 43 455667788899999984 11112226777777776655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0055 Score=64.11 Aligned_cols=163 Identities=10% Similarity=0.025 Sum_probs=133.0
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE 170 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 170 (365)
-+++++-+.| |.-+.-.+.|++|-+.... .|...+.+++|.+.|+..++.+.+....|..+|..+..
T Consensus 1501 iA~lNlEn~y----G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1501 IAYLNLENAY----GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHhHHHhh----CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 3444444333 4555556667776665431 24445889999999999999999889999999999999
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
..+ -+.|...+.+|++.-|. +.+.....+.+.++ .|+-+.+. ..|+-.+...|
T Consensus 1577 ~ne--------------~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk----~GDaeRGR-------tlfEgll~ayP 1631 (1710)
T KOG1070|consen 1577 QNE--------------AEAARELLKRALKSLPKQEHVEFISKFAQLEFK----YGDAERGR-------TLFEGLLSAYP 1631 (1710)
T ss_pred ccH--------------HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh----cCCchhhH-------HHHHHHHhhCc
Confidence 988 89999999999999998 88999999999999 99999998 67899999999
Q ss_pred CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 017806 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--FDFHRAIYNL 301 (365)
Q Consensus 249 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 301 (365)
+-.+.|+.+...-.+.|+. +-....|++++.+. |.....++..
T Consensus 1632 KRtDlW~VYid~eik~~~~----------~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1632 KRTDLWSVYIDMEIKHGDI----------KYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred cchhHHHHHHHHHHccCCH----------HHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 9999999999999999987 99999999999875 4444444433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00033 Score=40.91 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 251 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.+|+.+|.+|..+|++ ++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence 36899999999999996 99999999999999854
|
... |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0058 Score=45.95 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=86.4
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
++.-++..|+ +-+|++..+..+...+++. ..+..-|.++...+....+.+--..++..++.+|
T Consensus 2 ~A~~~~~rGn--------------hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~ 67 (111)
T PF04781_consen 2 KAKDYFARGN--------------HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECF 67 (111)
T ss_pred hHHHHHHccC--------------HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHH
Confidence 3455677777 9999999999999988765 6677889999988888888888888899999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.++..+.|..+..++.+|.-+.-..- |++++.-.+++|..
T Consensus 68 s~a~~Lsp~~A~~L~~la~~l~s~~~----------Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 68 SRAVELSPDSAHSLFELASQLGSVKY----------YKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhccChhHHHHHHHHHHHhhhHHH----------HHHHHHHHHHHhcc
Confidence 99999999998888888877655554 58888888888865
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00065 Score=59.97 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHH
Q 017806 115 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194 (365)
Q Consensus 115 ~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~ 194 (365)
+..+|+..++.+... .++|..++|...|+.++.++|++++++..+|.......+ .-+|-.+
T Consensus 112 ~~kEA~~Al~~A~~~-----~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~--------------iv~ADq~ 172 (472)
T KOG3824|consen 112 KVKEAILALKAAGRS-----RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE--------------IVEADQC 172 (472)
T ss_pred hhHHHHHHHHHHHHH-----HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh--------------hHhhhhh
Confidence 355666666666543 456789999999999999999999999999999999888 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 017806 195 YDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 195 ~~~al~~~p~~~~~~~~lg~~ 215 (365)
|-+|+.++|.+.+++.++...
T Consensus 173 Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 173 YVKALTISPGNSEALVNRART 193 (472)
T ss_pred hheeeeeCCCchHHHhhhhcc
Confidence 999999999999998886654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00045 Score=40.34 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
.+|+.+|.++..+|+ +++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~--------------~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD--------------YEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTS--------------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Confidence 579999999999999 999999999999999853
|
... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00045 Score=64.54 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-L--------CP---------TLHDAFYNWAIAISDR 219 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~lg~~~~~~ 219 (365)
...|+++|.+++++|. |.-++.+|.+|++ . .| ....+.||+|..|..
T Consensus 283 cif~NNlGcIh~~~~~--------------y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh- 347 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGC--------------YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH- 347 (696)
T ss_pred heeecCcceEeeehhh--------------HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-
Confidence 3457999999999999 9999999999995 1 11 246789999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
.|+.-.|. ++|.+++...-.+|..|.+++.|...-
T Consensus 348 ---~grPl~Af-------qCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 348 ---SGRPLLAF-------QCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ---cCCcHHHH-------HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999 555555555556889999999987653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.007 Score=54.30 Aligned_cols=118 Identities=18% Similarity=0.001 Sum_probs=98.1
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
-+.+.+..|+ +.+|...+++.+.-.|.+..++..--.+++. +|+...-. ..+++.
T Consensus 109 ~aai~~~~g~--------------~h~a~~~wdklL~d~PtDlla~kfsh~a~fy----~G~~~~~k-------~ai~kI 163 (491)
T KOG2610|consen 109 KAAILWGRGK--------------HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY----NGNQIGKK-------NAIEKI 163 (491)
T ss_pred hHHHhhcccc--------------ccHHHHHHHHHHHhCchhhhhhhhhhhHHHh----ccchhhhh-------hHHHHh
Confidence 3455566677 9999999999999999999999888888888 99988888 668888
Q ss_pred Hhc-CCCC---HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 244 VQL-NWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 244 l~~-~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
+-. +++. ..+.-.++-.+.+.|-+ ++|.+.-++++++++.+..+...++.++...|+..+...
T Consensus 164 ip~wn~dlp~~sYv~GmyaFgL~E~g~y----------~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 164 IPKWNADLPCYSYVHGMYAFGLEECGIY----------DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred ccccCCCCcHHHHHHHHHHhhHHHhccc----------hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence 765 6655 44555677788888885 999999999999999999999999999999887766544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.006 Score=54.74 Aligned_cols=118 Identities=14% Similarity=0.015 Sum_probs=96.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-CCCC---HHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTL---HDAFY 210 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~ 210 (365)
...|++.+|...+.+.|...|.+--++..--.+++.+|+ ...-...+++.+-. +++- .-+.-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~--------------~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN--------------QIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc--------------hhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 445788888888999999999998888888888999998 88888899998877 5554 44445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
.++..+.. .|-|++|. +.-++++++|+.+..+...++.++...+++ .++.+...+.
T Consensus 180 myaFgL~E----~g~y~dAE-------k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~----------Keg~eFM~~t 235 (491)
T KOG2610|consen 180 MYAFGLEE----CGIYDDAE-------KQADRALQINRFDCWASHAKAHVLEMNGRH----------KEGKEFMYKT 235 (491)
T ss_pred HHHhhHHH----hccchhHH-------HHHHhhccCCCcchHHHHHHHHHHHhcchh----------hhHHHHHHhc
Confidence 56666667 89999999 778999999999999999999999999996 7777776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.12 Score=44.62 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----CCCCH
Q 017806 138 RILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPTLH 206 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 206 (365)
++|++|..++.++++-..++. .++-..|.+...+.. +.++..+|++|..+ .|+.+
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k--------------lsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK--------------LSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHhCCcchH
Confidence 445566666665554333221 122333444444555 66666666666655 22222
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
..-...+--... .-+.++|+++|++++..++.-=+ +..-.+.+...+++|.+...+
T Consensus 111 AmaleKAak~le----nv~Pd~AlqlYqralavve~~dr-~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 111 AMALEKAAKALE----NVKPDDALQLYQRALAVVEEDDR-DQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhccch-HHHHHHHHHHhhhHhhhhHHh
Confidence 211122222222 45566666555444443332100 001123444455556666554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.014 Score=57.80 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhccChh------------h-hhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCcccc
Q 017806 116 NNAAMELINSVTGVDEE------------G-RSRQRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSL 177 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~------------~-~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~a 177 (365)
...|..+|+.+....-. + +-..+|.+.|+.+|+.+.+. .-.++.+.+.+|.+|....-...
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~- 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK- 306 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc-
Confidence 45677777776665522 1 23346888899988888771 11256688999999998542000
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 178 DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 178 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
. ++..|..+|.++-... ++++.+.+|.++.. -. ..+.+.+|.++|..|... .+..+.+++
T Consensus 307 ------~--d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~----g~----~~~d~~~A~~yy~~Aa~~--G~~~A~~~l 366 (552)
T KOG1550|consen 307 ------I--DYEKALKLYTKAAELG--NPDAQYLLGVLYET----GT----KERDYRRAFEYYSLAAKA--GHILAIYRL 366 (552)
T ss_pred ------c--cHHHHHHHHHHHHhcC--CchHHHHHHHHHHc----CC----ccccHHHHHHHHHHHHHc--CChHHHHHH
Confidence 0 2889999999998765 67789999999976 33 223344555889888754 688999999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
|.||..-.-. ..+...|..+|+++.+.+ ++.+.+.++..+..
T Consensus 367 a~~y~~G~gv------~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 367 ALCYELGLGV------ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHHHhCCCc------CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHH
Confidence 9999874221 233599999999999987 46666666655543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.16 Score=46.81 Aligned_cols=92 Identities=20% Similarity=0.006 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------------
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-------------------------------- 235 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~-------------------------------- 235 (365)
.+.|+.+-+++....|.-+-++...-..... .|+|+.|+++.+.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~----~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCA----AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHh----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 5556666666666666555555544444445 5666666655332
Q ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 236 --ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 236 --A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
|...-..++++.|+...+-..-+.+|++.|+. .++-..++.+-+..|.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~----------rKg~~ilE~aWK~ePH 295 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNL----------RKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccch----------hhhhhHHHHHHhcCCC
Confidence 45677788899999999999999999999997 7777777777766663
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.025 Score=54.89 Aligned_cols=154 Identities=14% Similarity=-0.014 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
||-+.+++.+.++.+ .++.-..+-.+..+.+...- ..-.+... .....+.|.+.+.......|+..-..+..|.++.
T Consensus 202 gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~-~~~~~~~~-~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 202 GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVV-PSFLGIDG-EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHH-HHHcCCcc-cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 888999999999887 33332222222222221110 00000000 2234889999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-CHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHR 296 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 296 (365)
. .|+.++|++.|++|+..-..- ..-..-.++.+|.++.-+.++ ++|..+|.+.++.+.- .+.
T Consensus 279 ~----~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w----------~~A~~~f~~L~~~s~WSka~ 341 (468)
T PF10300_consen 279 L----KGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDW----------EEAAEYFLRLLKESKWSKAF 341 (468)
T ss_pred H----hcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchH----------HHHHHHHHHHHhccccHHHH
Confidence 9 999999996655544211111 111356788999999999996 9999999999986543 234
Q ss_pred HHHHHHHHHHHhhhh
Q 017806 297 AIYNLGTVLYGLAED 311 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~ 311 (365)
-.+..|.|+..+|+.
T Consensus 342 Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 342 YAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHhhccc
Confidence 455678888888877
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.019 Score=47.68 Aligned_cols=139 Identities=13% Similarity=-0.003 Sum_probs=96.7
Q ss_pred hcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHH
Q 017806 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~ 190 (365)
++..+|-..|.+++..-... .. +.+...++...-++... -+-..++..+...++ +++
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak-----~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------------~d~ 107 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAK-----KP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN--------------LDK 107 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcC-----Cc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc--------------HHH
Confidence 34447777777776543211 11 44444555555554442 234567778888898 999
Q ss_pred HHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcC
Q 017806 191 ACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSA 266 (365)
Q Consensus 191 A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~ 266 (365)
|+..++.++....+. .-+-.+|+.+... +|.+++|+ +.+.... ++.. +...-..|.++...|+
T Consensus 108 A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL-------~~L~t~~--~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 108 AEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAAL-------KTLDTIK--EESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHH-------HHHhccc--cccHHHHHHHHhhhHHHHcCc
Confidence 999999998765442 4567889999999 99999999 5455432 1222 2345578999999999
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
. ++|+..|+++++.+++.+
T Consensus 175 k----------~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 175 K----------QEARAAYEKALESDASPA 193 (207)
T ss_pred h----------HHHHHHHHHHHHccCChH
Confidence 8 999999999999985543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.045 Score=47.15 Aligned_cols=176 Identities=14% Similarity=0.037 Sum_probs=105.7
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh--------------h--hhhhhHHHHHHHHHHHHHhC-----CCCH
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG--------------R--SRQRILTFAAKRYANAIERN-----PEDY 158 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~--~~~~~~~~A~~~~~~al~~~-----p~~~ 158 (365)
..+..-++.+ ....++++|...+.+++.-..+. . -....+.++..+|+++..+. |+-+
T Consensus 32 s~yekAAvaf-RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 32 SLYEKAAVAF-RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3344445556 57888999998888887544331 0 11245666666666666653 2222
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
..-...+.=....-+ .++|+..|++++.+-.. -.+.+...++++.. ..+|.+|-..
T Consensus 111 AmaleKAak~lenv~--------------Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a 172 (308)
T KOG1585|consen 111 AMALEKAAKALENVK--------------PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATA 172 (308)
T ss_pred HHHHHHHHHHhhcCC--------------HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHH
Confidence 111111111222233 89999999999887433 24567778888888 8999998855
Q ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 017806 233 WKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFDFHRAIYNLGTVLY 306 (365)
Q Consensus 233 ~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~ 306 (365)
+.+-..+ +++.+ ++-...+...-.+|....+ |..|..+|+..-++ .|++..+..+|-..|-
T Consensus 173 ~lKe~~~---~~~~~~y~~~~k~~va~ilv~L~~~D----------yv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 173 FLKEGVA---ADKCDAYNSQCKAYVAAILVYLYAHD----------YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred HHHhhhH---HHHHhhcccHHHHHHHHHHHHhhHHH----------HHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 4433222 23333 2223344444455555556 59999999997766 4667778888766654
Q ss_pred H
Q 017806 307 G 307 (365)
Q Consensus 307 ~ 307 (365)
.
T Consensus 240 ~ 240 (308)
T KOG1585|consen 240 E 240 (308)
T ss_pred c
Confidence 3
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.031 Score=56.26 Aligned_cols=105 Identities=17% Similarity=0.091 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+++..|...+.+.+...|+...+...-|.++.+ +|+.++|. .+++..-...+++-..+--+-.+|..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~-------~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEAL-------KLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHH-------HHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 459999999999999999999999999999999 99999999 6677766667788889999999999999
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
+. ++|..+|++++..+|+ -+....+=.+|.+.++..
T Consensus 92 ~~----------d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 92 KL----------DEAVHLYERANQKYPS-EELLYHLFMAYVREKSYK 127 (932)
T ss_pred hh----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHH
Confidence 97 9999999999999999 777777878887777543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.036 Score=44.51 Aligned_cols=81 Identities=23% Similarity=0.153 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 188 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
...++..+++++.+.... ..+...++..+.. .|++++|+ ..+++++.
T Consensus 22 ~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~----~~~~~~a~-------~~~~~~l~ 90 (146)
T PF03704_consen 22 PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE----AGDYEEAL-------RLLQRALA 90 (146)
T ss_dssp HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHH-------HHHHHHHh
Confidence 788888888888763221 2334456666666 88999888 88999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 246 ~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
.+|.+-.+|..+-.+|...|+. .+|++.|++...
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYRR 124 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHH
Confidence 9999999999999999999997 888888887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.013 Score=55.24 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
...=...|++|+...+.+...|.+......+ .+.+.+-- +.|.+++..+|++++.|..-+...+..+..
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk----~~~~~~v~-------ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKK----KKTYGEVK-------KIFAAMLAKHPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCchhHHhhhhhHHhhccc
Confidence 3445678999999999999999998877777 77777777 789999999999999999999999998884
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
.+.|...|.++|+.+|+++..|..
T Consensus 156 ---------i~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 156 ---------IESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred ---------hHHHHHHHHHHhhcCCCChHHHHH
Confidence 599999999999999999887654
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0044 Score=59.36 Aligned_cols=98 Identities=22% Similarity=0.202 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 188 LEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
...|+.|+..|+...|... -...+|+.++.. -|-...|. ..+.+++.++...+-.++.+|..+..+.+
T Consensus 623 ~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~-------~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 623 STFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDAT-------KLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHH-------HHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 9999999999999998743 357899999999 88888888 66888888888889999999999999999
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
. +.|++.|++|+.++|+++.....|-.+-+
T Consensus 692 i----------~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 I----------SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred h----------HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 7 99999999999999999998888766655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.072 Score=47.29 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--- 235 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~--- 235 (365)
+.-+.-+.-....|+ +.+|...|..++...|++.++...++.+|.. .|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~--------------~~~a~~~~~~al~~~~~~~~~~~~la~~~l~----~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 135 EEALAEAKELIEAED--------------FGEAAPLLKQALQAAPENSEAKLLLAECLLA----AGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHhhhhhhccc--------------hhhHHHHHHHHHHhCcccchHHHHHHHHHHH----cCChHHHHHHHHhCcc
Confidence 344555666677788 9999999999999999999999999999999 9999999877543
Q ss_pred -----------H-------------HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 236 -----------A-------------TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 236 -----------A-------------~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
| +..+++.+..||++.++-+.++..|...|+. ++|.+.+-..+..+
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~----------e~Ale~Ll~~l~~d 266 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRN----------EAALEHLLALLRRD 266 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence 1 2445555667899999999999999999986 88888888777765
Q ss_pred C--CCHHHHHHHHHHHHHhh
Q 017806 292 F--DFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 292 p--~~~~~~~~lg~~~~~~g 309 (365)
- .+..+...|-.++...|
T Consensus 267 ~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 267 RGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred ccccCcHHHHHHHHHHHhcC
Confidence 3 33455555555555555
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0033 Score=36.13 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
++++.+|.++...|+ +++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~--------------~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGD--------------YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCH--------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCcCC
Confidence 478999999999999 999999999999999974
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.42 Score=44.16 Aligned_cols=192 Identities=17% Similarity=0.032 Sum_probs=107.7
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh------hhh----hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE------GRS----RQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~------~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
..+-++.+-++..+ ..|+++.|..-|+.-+..-.. |.+ +.|+.+.|+.+-+++-...|.-+.++...-.
T Consensus 118 qepLIhlLeAQaal-~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 118 QEPLIHLLEAQAAL-LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred chHHHHHHHHHHHH-hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 44556666666663 777788777777765543322 222 2377777777777777777776666555544
Q ss_pred HHHHhcCccccCCC-------------C--------------chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 167 VLQESADNVSLDST-------------S--------------PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 167 ~~~~~~~~~~a~~~-------------~--------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
.....|++..+... . .........|...-.++.++.|+...+-..-+.+++.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~- 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR- 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-
Confidence 45555552222000 0 0000124555566666666777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH---HHHhCCCCHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA---AIQLQFDFHR 296 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~---al~~~p~~~~ 296 (365)
.|+..++- +.++.+.+.+| +++++ .+|.+...- +.++.-+++ ...+.|+|.+
T Consensus 276 ---d~~~rKg~-------~ilE~aWK~eP-HP~ia----~lY~~ar~g----------dta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 276 ---DGNLRKGS-------KILETAWKAEP-HPDIA----LLYVRARSG----------DTALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred ---ccchhhhh-------hHHHHHHhcCC-ChHHH----HHHHHhcCC----------CcHHHHHHHHHHHHhcCccchH
Confidence 88888887 55666666666 34433 233332221 233333333 2344666666
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 017806 297 AIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~~~a~ 315 (365)
....++..-+.-|+...+.
T Consensus 331 s~~~va~aAlda~e~~~AR 349 (531)
T COG3898 331 SSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHHHHHHHHhccchHHHH
Confidence 6666666666666554443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.035 Score=47.81 Aligned_cols=102 Identities=19% Similarity=0.116 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHHH
Q 017806 188 LEEACKKYDEATRL----CPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQAL 254 (365)
Q Consensus 188 ~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~------~~~~~ 254 (365)
+++|++.|.-|+-. ... -+..+..++.+|.. .|+.+.....+++|+..|.++++.... ...+.
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 78888888777643 222 36778899999999 999999999999999999999976532 35788
Q ss_pred HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Q 017806 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGT 303 (365)
Q Consensus 255 ~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~ 303 (365)
+.+|.+..+.|++ ++|+++|.+++...-... ..+.+++.
T Consensus 169 YLigeL~rrlg~~----------~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRRLGNY----------DEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHhCCH----------HHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999996 999999999998643322 34455544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0032 Score=55.70 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.|+.+.|. ..|+.|+.++|++++++..+|......++. -+|-.+|-+|+.++|.+.+++.|..
T Consensus 129 ~Gk~ekA~-------~lfeHAlalaP~~p~~L~e~G~f~E~~~~i----------v~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAM-------TLFEHALALAPTNPQILIEMGQFREMHNEI----------VEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHH-------HHHHHHHhcCCCCHHHHHHHhHHHHhhhhh----------HhhhhhhheeeeeCCCchHHHhhhh
Confidence 89999999 779999999999999999999999998887 9999999999999999999988876
Q ss_pred HHH
Q 017806 303 TVL 305 (365)
Q Consensus 303 ~~~ 305 (365)
...
T Consensus 192 RT~ 194 (472)
T KOG3824|consen 192 RTT 194 (472)
T ss_pred ccc
Confidence 543
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.11 Score=48.04 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
-.++++.-.+.+..+|+...+|+..-.++...... +..........+++-+.....++..+|+...+|+.+..++.+
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~--~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~- 121 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR--AQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK- 121 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh--hcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-
Confidence 45677888888999999999998877766554321 122333344568899999999999999999999999999988
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
.+.. .+++-+..++++++.||.+..+|..+=.+....... .....+=+++..++|.-++.|..+|.
T Consensus 122 ---~p~~-----~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~------~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 122 ---NPHS-----DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS------RNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred ---CCCc-----hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc------cccchhHHHHHHHHHhccchhhhHHH
Confidence 7765 334444889999999999998888776666554431 00125678899999999999999999
Q ss_pred HHHHHHHHhh
Q 017806 300 NLGTVLYGLA 309 (365)
Q Consensus 300 ~lg~~~~~~g 309 (365)
+...++..+-
T Consensus 188 yRs~lL~~l~ 197 (421)
T KOG0529|consen 188 YRSLLLSTLH 197 (421)
T ss_pred HHHHHHHHhc
Confidence 9999888654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.11 Score=46.27 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=73.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCC---------CCchhhhHHHHHHHHHHHH------
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS---------TSPSKDALLEEACKKYDEA------ 198 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~---------~~~~~~~~~~~A~~~~~~a------ 198 (365)
....|++.+|...|..++...|++.++...++.|+...|+...+.. ......+ ....++.+.++
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCH
Confidence 3455889999999999999999999999999999999998544410 0000111 11224444433
Q ss_pred ------HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 199 ------TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 199 ------l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
+..+|++.++.+.++..+.. .|+.++|. ..+-..++.|
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~----~g~~e~Al-------e~Ll~~l~~d 266 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHL----VGRNEAAL-------EHLLALLRRD 266 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhc
Confidence 44589999999999999999 99999999 5565555554
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=56.82 Aligned_cols=103 Identities=19% Similarity=0.093 Sum_probs=86.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
..+|+-..|+.|+..++...|... ....+|+++..+.|- .-.|-..+.+++.++-..+..++.+|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~--------------~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL--------------HLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh--------------hccHHHHHHHHHhhcccCchHHHhcc
Confidence 345889999999999999888654 347889999998887 88899999999999988888889988
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
.++.. +.+.+.|+ ++|+.|++.+|+++.+...|-.+-.
T Consensus 684 ~~~l~----l~~i~~a~-------~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 684 NAYLA----LKNISGAL-------EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHH----HhhhHHHH-------HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888 88888888 8899999999999888776655544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0037 Score=37.07 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 201 (365)
+|.+||.+|..+|+ |++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~--------------~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD--------------YEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT---------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--------------HHHHHHHHHHHHHh
Confidence 57899999999999 99999999996654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.005 Score=35.36 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++++++|.++...|++ ++|+..|++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence 4789999999999996 99999999999999974
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.022 Score=50.75 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=61.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...++++.|+.+.+..+.++|+++.-+..+|.+|.++|. +..|...++..++..|+++.+-.-.
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--------------~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--------------EHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46677999999999999999999999999999999999999 9999999999999999998765543
Q ss_pred H
Q 017806 213 A 213 (365)
Q Consensus 213 g 213 (365)
.
T Consensus 256 ~ 256 (269)
T PRK10941 256 A 256 (269)
T ss_pred H
Confidence 3
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.098 Score=48.17 Aligned_cols=161 Identities=9% Similarity=0.050 Sum_probs=114.1
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQE 170 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 170 (365)
+..+|.++++|..+.... ...-. .... ......-.+.-+..|++||+.+|++...+..+=.+...
T Consensus 12 v~~~P~di~~Wl~li~~Q-d~~~~-------------~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~ 77 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQ-DELFR-------------LQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK 77 (321)
T ss_pred HHhCcccHHHHHHHHHHH-HHhcc-------------ccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 567889998887765333 11100 0000 11122346778899999999999999988887777777
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC---
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--- 247 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~--- 247 (365)
..+ -++-..-+++++..+|++...|...-...... ...-.+......|.+++..+.......
T Consensus 78 ~~~--------------~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~ 142 (321)
T PF08424_consen 78 VWD--------------SEKLAKKWEELLFKNPGSPELWREYLDFRQSN-FASFTVSDVRDVYEKCLRALSRRRSGRMTS 142 (321)
T ss_pred hCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHhhcccccc
Confidence 777 88889999999999999999887755444320 002357788888888888777765442
Q ss_pred --------CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 248 --------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 248 --------p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
-....++.+++..+...|.. +.|+..++-.++++
T Consensus 143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~----------E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 143 HPDLPELEEFMLYVFLRLCRFLRQAGYT----------ERAVALWQALLEFN 184 (321)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCch----------HHHHHHHHHHHHHH
Confidence 11245667778888888886 99999999999986
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.17 Score=41.35 Aligned_cols=161 Identities=17% Similarity=0.095 Sum_probs=116.9
Q ss_pred CCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCccccCCCCch
Q 017806 106 GNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDY--DALYNWALVLQESADNVSLDSTSPS 183 (365)
Q Consensus 106 g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~a~~~~~~ 183 (365)
|..|+ +.+..+.+-+.|..++++... +..++|+..|...-+.+-... -+.+..|.+....|+
T Consensus 46 gy~yw-~~s~as~sgd~flaAL~lA~~-----~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd---------- 109 (221)
T COG4649 46 GYTYW-QTSRASKSGDAFLAALKLAQE-----NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD---------- 109 (221)
T ss_pred eeehh-cccccccchHHHHHHHHHHHc-----CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc----------
Confidence 34554 677778888888888876443 447899999988877765543 356777888889999
Q ss_pred hhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHH
Q 017806 184 KDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA-VQLNWNSPQALNNWG 258 (365)
Q Consensus 184 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg 258 (365)
-..|+..|..+-.-.|. .-.+...-+.++.. .|.|+... ...+.. ..-+|--..+.--||
T Consensus 110 ----ta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD----~gsy~dV~-------srvepLa~d~n~mR~sArEALg 174 (221)
T COG4649 110 ----TAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD----NGSYDDVS-------SRVEPLAGDGNPMRHSAREALG 174 (221)
T ss_pred ----HHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc----cccHHHHH-------HHhhhccCCCChhHHHHHHHHh
Confidence 99999999998665432 23456666778888 99998877 333321 233444566777899
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
.+-++-|++ ..|.++|.+... +.+-+....+.+.+++.+
T Consensus 175 lAa~kagd~----------a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 175 LAAYKAGDF----------AKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHhccch----------HHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 999999996 999999999887 556677777777776654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.22 Score=49.56 Aligned_cols=143 Identities=22% Similarity=0.149 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPTLHDAFYNW 212 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l 212 (365)
++...|..+|+.+... ++..+...+|.++..-+. ....+.+.|+.+|+.+... .-.++.+.+.+
T Consensus 226 ~~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~---------g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~l 294 (552)
T KOG1550|consen 226 GELSEAFKYYREAAKL--GHSEAQYALGICYLAGTY---------GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGL 294 (552)
T ss_pred hhhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccc---------cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHH
Confidence 3467889999888765 678889999999987522 1122399999999999771 11256688999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
|.+|.. ..-...- .+..|+.+|.++... +++.+.+.+|.++..-. +..++..|..+|..|...
T Consensus 295 g~~Y~~----g~~~~~~--d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~-------~~~d~~~A~~yy~~Aa~~-- 357 (552)
T KOG1550|consen 295 GRLYLQ----GLGVEKI--DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT-------KERDYRRAFEYYSLAAKA-- 357 (552)
T ss_pred HHHHhc----CCCCccc--cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC-------ccccHHHHHHHHHHHHHc--
Confidence 999987 4311110 333444889988876 46788999999998876 112358999999999865
Q ss_pred CCHHHHHHHHHHHHHh
Q 017806 293 DFHRAIYNLGTVLYGL 308 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~ 308 (365)
.+..+.++++.||..-
T Consensus 358 G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 358 GHILAIYRLALCYELG 373 (552)
T ss_pred CChHHHHHHHHHHHhC
Confidence 5788999999998743
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.096 Score=48.62 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=104.5
Q ss_pred hhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-C-C----
Q 017806 135 SRQRILTFAAKRYANAIERNP----EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-T---- 204 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p-~---- 204 (365)
...|.++.|...+.++...++ ..+.+.+..+.+++..|+ ..+|+..++..+... . .
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--------------~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--------------QEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhccccc
Confidence 345889999999999888652 246778888999999999 999999999888721 1 1
Q ss_pred ---------------------CHHHHHHHHHHHHHHHHhcCCHHHHH------HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 205 ---------------------LHDAFYNWAIAISDRAKMRGRTKEAE------ELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 205 ---------------------~~~~~~~lg~~~~~~~~~~g~~~~A~------~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
........+.++.. .|+|-... ..++.+++.|..+++.+|+...+|+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~----~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLL----LAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHH----HHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 11222345566666 66666665 556667799999999999999999999
Q ss_pred HHHHHHhcCcchhH-------HhhhHHHHHHHHHHHHHHhCCCC
Q 017806 258 GLALQELSAIVPAR-------EKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 258 g~~~~~~~~~~~~~-------~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
|..+...-+..... ........|+..|-+++.+.+.+
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 99988875543221 23344567999999999998873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.005 Score=36.51 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
+|.+||.+|..+|++ ++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDY----------EKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-H----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence 578999999999996 9999999996654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.21 Score=46.25 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
......|...+.+....|. ++.|...+.++...++. .+.+....+.++.. .|+..+|+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~--------------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~Ai 204 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGN--------------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEAI 204 (352)
T ss_pred hHHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHHH
Confidence 3556778888889999998 99999999999886532 56788888999999 99999999
Q ss_pred HHHHHHHH-HHHHHHhc----------------------C----CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 231 ELWKQATK-NYEKAVQL----------------------N----WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 231 ~~~~~A~~-~~~~al~~----------------------~----p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
..++..+. .+..-+.. + ...+.++..+|....... -....+.+++++..
T Consensus 205 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~----~~~~~~~~~~~~~~ 280 (352)
T PF02259_consen 205 QKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY----SKLSSESSDEILKY 280 (352)
T ss_pred HHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc----cccccccHHHHHHH
Confidence 77666555 33322100 0 011334445555555540 00022456999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCcc
Q 017806 284 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (365)
Q Consensus 284 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 346 (365)
|++++.++|+...+|+.+|..+...-+......... ...........+...|.++..+.+.
T Consensus 281 ~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 281 YKEATKLDPSWEKAWHSWALFNDKLLESDPREKEES--SQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHhhhhccccc--chhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999887765443221100 0011123335567777777777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0072 Score=33.71 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
.+++.+|.++..+++ ++.|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~--------------~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD--------------YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh--------------HHHHHHHHHHHHccCCCC
Confidence 468999999999999 999999999999998863
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.82 Score=42.10 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=89.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
.-|++.++.+|.+..+|..+.......-...... ........+.-+..|++||+.+|++...+..+-.+... ..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~----~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK----VW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hC
Confidence 4578889999999999999887766553311100 23344557888999999999999999998888777777 77
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
..++.. +.+++++..+|++...|..+-..... ...+ .+......|.++|+.
T Consensus 80 ~~~~l~-------~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f--------~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 80 DSEKLA-------KKWEELLFKNPGSPELWREYLDFRQSNFASF--------TVSDVRDVYEKCLRA 131 (321)
T ss_pred CHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHH
Confidence 777666 67899999999999998766554444 2222 135666666666644
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.15 Score=53.16 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=90.2
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
.-.....|++|+..|++.-.-.|.. .++.+..|..+..++++.|+- +.|.+|+..|++. .-.|.-|--|...
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYL-HGGVGAPLEYLGK 558 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence 3345577999999999999998874 578999999999977777764 5566666888874 4457778888889
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+.+|.++|++ ++-+++|.-|++..|+++.+-...-.+.+++.
T Consensus 559 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 559 ALVYQRLGEY----------NEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred HHHHHHhhhH----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 9999999996 99999999999999999876554444444444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.056 Score=48.18 Aligned_cols=77 Identities=12% Similarity=0.004 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
..+.++-.+|...++ ++.|+.+.+..+.++|+++.-+.-+|.+|.+ +|.+..|. .
T Consensus 182 Rml~nLK~~~~~~~~--------------~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q----L~c~~~A~-------~ 236 (269)
T PRK10941 182 KLLDTLKAALMEEKQ--------------MELALRASEALLQFDPEDPYEIRDRGLIYAQ----LDCEHVAL-------S 236 (269)
T ss_pred HHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHH-------H
Confidence 356777888888888 9999999999999999999999999999999 99999999 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH
Q 017806 239 NYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~ 260 (365)
.++.-++..|+++.+-.-.-.+
T Consensus 237 DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 237 DLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHhCCCchhHHHHHHHH
Confidence 7999999999998876544433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.061 Score=39.33 Aligned_cols=70 Identities=24% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRA 220 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~ 220 (365)
.+..+++.++.+|++..+.+.+|..+...|+ +++|++.+-.++..+++. ..+...+-.++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~--------------~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-- 70 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGD--------------YEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-- 70 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCccccccHHHHHHHHHHHH--
Confidence 4567889999999999999999999999999 999999999999998764 5555666666655
Q ss_pred HhcCCHHHHH
Q 017806 221 KMRGRTKEAE 230 (365)
Q Consensus 221 ~~~g~~~~A~ 230 (365)
.|.-+...
T Consensus 71 --lg~~~plv 78 (90)
T PF14561_consen 71 --LGPGDPLV 78 (90)
T ss_dssp --H-TT-HHH
T ss_pred --cCCCChHH
Confidence 66644444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.22 Score=40.40 Aligned_cols=112 Identities=17% Similarity=-0.016 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.+..+..+-...++ .+++...+.-..-+.|..+..-..-|.++.. .|+|.+|+ ..
T Consensus 12 gLie~~~~al~~~~--------------~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~----r~~w~dA~-------rl 66 (160)
T PF09613_consen 12 GLIEVLSVALRLGD--------------PDDAEALLDALRVLRPEFPELDLFDGWLHIV----RGDWDDAL-------RL 66 (160)
T ss_pred HHHHHHHHHHccCC--------------hHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hCCHHHHH-------HH
Confidence 44555555566667 9999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++......|..+.+.-.++.|+..+++ ..=..+-.++++..+ ++.+.. |...+....
T Consensus 67 Lr~l~~~~~~~p~~kALlA~CL~~~~D-----------~~Wr~~A~evle~~~-d~~a~~-Lv~~Ll~~~ 123 (160)
T PF09613_consen 67 LRELEERAPGFPYAKALLALCLYALGD-----------PSWRRYADEVLESGA-DPDARA-LVRALLARA 123 (160)
T ss_pred HHHHhccCCCChHHHHHHHHHHHHcCC-----------hHHHHHHHHHHhcCC-ChHHHH-HHHHHHHhc
Confidence 999888889999999999999999999 344445566666655 454433 333333333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0078 Score=33.56 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.+|+++|.++...+++ +.|+.+|++++.++|++
T Consensus 2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence 5788999999999996 99999999999998863
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.19 Score=47.01 Aligned_cols=149 Identities=15% Similarity=0.067 Sum_probs=95.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-------------------CCCH---HHHH
Q 017806 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-------------------WNSP---QALN 255 (365)
Q Consensus 198 al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-------------------p~~~---~~~~ 255 (365)
.+..+|-+.+.+..++.++.. +|+...|.++.++|+-.|++++.-. +.|. .+.+
T Consensus 32 ll~~~PyHidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF 107 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence 345689999999999999999 9999999999999999998776321 1122 2444
Q ss_pred HHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HhhhhhhhhcC--------cCCCCCCC
Q 017806 256 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLY-GLAEDTLRTGG--------TVNPREVS 325 (365)
Q Consensus 256 ~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~g~~~~a~~~--------~~~~~~~~ 325 (365)
.....+.+.|- +..|.++++-.+.++|. |+-.....-..|. +.++...-+.. .......-
T Consensus 108 r~i~~L~~RG~----------~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 108 RYIQSLGRRGC----------WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred HHHHHHHhcCc----------HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 55556666666 59999999999999998 7754444433333 33333221111 11112235
Q ss_pred cchHHHHHHHHHHHHHhc--------------CccHHHHHHHHHhhhhh
Q 017806 326 PNELYSQSAIYIAAAHAL--------------KPSYSVYSSALRLVRSM 360 (365)
Q Consensus 326 ~~~~~~~a~~~~~~a~~~--------------~~~~~~~~~al~~~~~~ 360 (365)
|+-.|..+..++..-..- +.+.....+|+...+.+
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 666777777776544431 34455566666555443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.067 Score=40.34 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=70.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (365)
++..|++-+|++..+..+..++++. ..+..-|.++..+....+ +......-+--++++|.++..+.|..+..++
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~te---n~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTE---NPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhcc---CchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4567889999999999999888776 556677888877654111 2222333467799999999999999988888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
.||.-+.. ..+|++++...++++.+
T Consensus 83 ~la~~l~s-----------~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGS-----------VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhh-----------HHHHHHHHHHHHHHhcc
Confidence 87766544 33444444777777654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.34 Score=45.11 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.++...++=..|....+ |+.-+..++..-.+ -++.+.+.+.+|.++.+| .+.|+.++|+
T Consensus 140 s~div~~lllSyRdiqd--------------ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr-n~~gdre~Al-- 202 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQD--------------YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR-NKPGDREKAL-- 202 (374)
T ss_pred ChhHHHHHHHHhhhhhh--------------HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc-ccCCCHHHHH--
Confidence 45667788888999898 99999999887766 455677777888887653 3468888888
Q ss_pred HHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 233 WKQATKNYEK-AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 233 ~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
..+.. .....+.+++++..+|.+|..+-.- .........++|+.+|.++.+++|+. ..-.|++.++...|.
T Consensus 203 -----~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~-s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 203 -----QILLPVLESDENPDPDTLGLLGRIYKDLFLE-SNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred -----HHHHHHHhccCCCChHHHHHHHHHHHHHHHH-cCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 66777 4455677899999999999875321 00112344799999999999999754 444677778777774
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.58 Score=44.45 Aligned_cols=165 Identities=16% Similarity=0.085 Sum_probs=109.0
Q ss_pred hhhcHHHHHHHHHHhhccChh------------------------hhhhhhhHHHHHHHHHHHHHh---CCC-------C
Q 017806 112 LAEQNNAAMELINSVTGVDEE------------------------GRSRQRILTFAAKRYANAIER---NPE-------D 157 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~------------------------~~~~~~~~~~A~~~~~~al~~---~p~-------~ 157 (365)
..|-+++|..+-.+++..... |....|++.+|++........ .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 345566666666666554321 455569999999887777664 454 2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-L--HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
+..++.+|.-...-+- ++.|...|..|+++... + +-+..|++.+|.. .|+-+.--
T Consensus 367 ~~ih~LlGlys~sv~~--------------~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~----~~~~ed~y---- 424 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNC--------------YENAEFHFIEATKLTESIDLQAFCNLNLAISYLR----IGDAEDLY---- 424 (629)
T ss_pred HHHHHHHhhHhhhcch--------------HHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH----hccHHHHH----
Confidence 3455666666666666 99999999999987644 2 4456788999988 77654433
Q ss_pred HHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH--------
Q 017806 235 QATKNYEKAVQLNWNS----------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-------- 296 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------- 296 (365)
+..+ .+.|.+ ..+++..|...+.++++ .+|.....+.+++. +++
T Consensus 425 ---~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l----------nEaK~~l~e~Lkma--naed~~rL~a~ 486 (629)
T KOG2300|consen 425 ---KALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDL----------NEAKRFLRETLKMA--NAEDLNRLTAC 486 (629)
T ss_pred ---HHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHhhc--chhhHHHHHHH
Confidence 2222 223331 45777888888888886 99999999999885 333
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 017806 297 AIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~~~a~~ 316 (365)
.+..||.+...+|+..+...
T Consensus 487 ~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHHHHHHHhcchHHHHh
Confidence 34445666667776555443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.12 Score=37.72 Aligned_cols=66 Identities=20% Similarity=0.091 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcC
Q 017806 190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSA 266 (365)
Q Consensus 190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~ 266 (365)
..+..+++.+..+|++..+.+.++..+.. .|++++|+ ..+-.+++.++++ ..+.-.+-.++..+|.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~----~g~~e~Al-------~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLA----AGDYEEAL-------DQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 35778899999999999999999999999 99999999 7788999988775 3344444444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.033 Score=36.20 Aligned_cols=44 Identities=20% Similarity=0.152 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
+.++.+|..++.+|+ |++|..+.+.+++++|+|..+......+.
T Consensus 2 d~lY~lAig~ykl~~--------------Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGE--------------YEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhh--------------HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 468899999999999 99999999999999999988776554443
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.12 Score=49.86 Aligned_cols=130 Identities=22% Similarity=0.083 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 017806 143 AAKRYANAIERNPEDYDALYN--WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 220 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~--lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 220 (365)
++..+...+.++|.++..+.. +...+...+. ...+.-.++.++..+|.+..++.+||.++..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~-- 113 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLAD--------------STLAFLAKRIPLSVNPENCPAVQNLAAALEL-- 113 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhcccccc--------------chhHHHHHhhhHhcCcccchHHHHHHHHHHH--
Confidence 566666667788888776333 4666667777 8889999999999999999999999999988
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW------GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l------g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.|....+.. .+.+.+....|++..+...+ |..+..+++. .++....++++++.|.+
T Consensus 114 --~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 114 --DGLQFLALA------DISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRT----------AEAELALERAVDLLPKY 175 (620)
T ss_pred --hhhHHHHHH------HHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhhhhh
Confidence 777666663 44555888889998888877 5555555554 88888888899999998
Q ss_pred HHHHHHHHHHHH
Q 017806 295 HRAIYNLGTVLY 306 (365)
Q Consensus 295 ~~~~~~lg~~~~ 306 (365)
+.+...+.....
T Consensus 176 ~~~~~~~~~~r~ 187 (620)
T COG3914 176 PRVLGALMTARQ 187 (620)
T ss_pred hhhHhHHHHHHH
Confidence 777666655533
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.86 Score=39.93 Aligned_cols=191 Identities=12% Similarity=-0.030 Sum_probs=93.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhh----------hhhhhHH-HHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGR----------SRQRILT-FAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~-~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|.+-.+|..+-.++.....+..+-++++..++..+|..+ ...|+.. .-+...+.++..+..+..+
T Consensus 70 i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHa 149 (318)
T KOG0530|consen 70 IRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHA 149 (318)
T ss_pred HHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhh
Confidence 3444555455544444442222334444444444444444421 0012332 3344444444444444444
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|..+-.+...-+. |+.-+.+..+.|+.+-.|-.+|+.+-.+... ...+..+ ..++.-+.+.
T Consensus 150 WshRqW~~r~F~~--------------~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~----~~~~~~~-~~le~El~yt 210 (318)
T KOG0530|consen 150 WSHRQWVLRFFKD--------------YEDELAYADELLEEDIRNNSAWNQRYFVITN----TKGVISK-AELERELNYT 210 (318)
T ss_pred hHHHHHHHHHHhh--------------HHHHHHHHHHHHHHhhhccchhheeeEEEEe----ccCCccH-HHHHHHHHHH
Confidence 4444444444444 5555555555555544444444443222222 1111110 0133345777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAI-QLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g 309 (365)
.+.|.+.|++-.+|+.|.-++.. .|-. .+..-.......+ +..-..+..+-.|...|...+
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~--------s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~ 273 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLS--------SDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDA 273 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCc--------CCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Confidence 88899999999999999998886 4410 0133333333333 444556777766776664433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.14 Score=41.54 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
.+..+..+-.. .++.+++. ..+.-.--+.|+.+..-..-|.++...|++ .+|+..|+.+
T Consensus 12 gLie~~~~al~----~~~~~D~e-------~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~l 70 (160)
T PF09613_consen 12 GLIEVLSVALR----LGDPDDAE-------ALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHc----cCChHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHHH
Confidence 44455555555 78888888 667777778999999999999999999996 9999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 288 IQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 288 l~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
....|..+.+--.++.|++.+|+..+...
T Consensus 71 ~~~~~~~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 71 EERAPGFPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred hccCCCChHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999999998876654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.046 Score=35.49 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+.++.++..+.++|++ ++|.++.+.+|+++|+|..+......+-.
T Consensus 2 d~lY~lAig~ykl~~Y----------~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEY----------EKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 5678899999999995 99999999999999999988766555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.28 Score=50.49 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
+.+.+|..+|.+....|. ..+||+.|-+| +++..|...-.+..+ .|.|++-+.++.-
T Consensus 1102 n~p~vWsqlakAQL~~~~--------------v~dAieSyika-----dDps~y~eVi~~a~~----~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGL--------------VKDAIESYIKA-----DDPSNYLEVIDVASR----TGKYEDLVKYLLM 1158 (1666)
T ss_pred CChHHHHHHHHHHHhcCc--------------hHHHHHHHHhc-----CCcHHHHHHHHHHHh----cCcHHHHHHHHHH
Confidence 567889999999988888 88888888776 555566666666666 7777766665432
Q ss_pred HH------------------------------------------HHHH----HHHhcCCCCHHHHHHHHHHHHHhcCcch
Q 017806 236 AT------------------------------------------KNYE----KAVQLNWNSPQALNNWGLALQELSAIVP 269 (365)
Q Consensus 236 A~------------------------------------------~~~~----~al~~~p~~~~~~~~lg~~~~~~~~~~~ 269 (365)
|. ++|+ .|.++--++..-|..|+..+..+|+++.
T Consensus 1159 aRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 10 1111 1112222345566778888888888876
Q ss_pred hHH-------------------------------------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 270 ARE-------------------------------------------------KQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 270 ~~~-------------------------------------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
|-+ ..|.|++-+..++.++.+.--+-..+..
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 655 5688899999999998887777777777
Q ss_pred HHHHHHHhh
Q 017806 301 LGTVLYGLA 309 (365)
Q Consensus 301 lg~~~~~~g 309 (365)
||..|.+-.
T Consensus 1319 LaiLYskyk 1327 (1666)
T KOG0985|consen 1319 LAILYSKYK 1327 (1666)
T ss_pred HHHHHHhcC
Confidence 888887654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.22 Score=48.20 Aligned_cols=133 Identities=15% Similarity=0.003 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYN--WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
-.-++..+...+.+++.++..+.. +...+.. .+....+. ..+..++..+|.++.+..+||.++...|
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~----~~~~~~~~-------~~~~~~l~~~~~~~~~~~~L~~ale~~~ 115 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAP----LADSTLAF-------LAKRIPLSVNPENCPAVQNLAAALELDG 115 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccc----cccchhHH-------HHHhhhHhcCcccchHHHHHHHHHHHhh
Confidence 344777777778888888876433 4777777 88887777 6789999999999999999999999988
Q ss_pred CcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCc
Q 017806 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (365)
Q Consensus 266 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 345 (365)
.. +.-+....+-+....|++......+-.+|. .++..+..+.- .++...+.++..+.|
T Consensus 116 ~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~------------~~~~~~l~~~~d~~p 173 (620)
T COG3914 116 LQ---------FLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRT------------AEAELALERAVDLLP 173 (620)
T ss_pred hH---------HHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccH------------HHHHHHHHHHHHhhh
Confidence 76 455555555599999999999888866666 66665554432 345555566666666
Q ss_pred cHHHHHHH
Q 017806 346 SYSVYSSA 353 (365)
Q Consensus 346 ~~~~~~~a 353 (365)
.+.+...+
T Consensus 174 ~~~~~~~~ 181 (620)
T COG3914 174 KYPRVLGA 181 (620)
T ss_pred hhhhhHhH
Confidence 66554443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.024 Score=34.40 Aligned_cols=36 Identities=33% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
..++++||.+|.. .|++++|+.++++++..+++.+.
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHHHHHHHhc
Confidence 4678999999999 99999999999999888887753
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.04 Score=52.43 Aligned_cols=97 Identities=23% Similarity=0.142 Sum_probs=79.1
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
..+.......++..|.+++...|.....+.+.+.++.+|. =.|+.-.|+ .....|++++|....+|+.|+.+
T Consensus 383 d~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk-W~~d~~~Al-------rDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 383 DGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK-WRGDSYLAL-------RDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred chhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh-ccccHHHHH-------HhHHhhccCChHHHHHHHHHHHH
Confidence 3344445899999999999999999999999999998721 123444444 78899999999999999999999
Q ss_pred HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+..++++ .+|+++...+....|.+.
T Consensus 455 L~el~r~----------~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 455 LNELTRY----------LEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHhhH----------HHhhhhHHHHhhcCchhh
Confidence 9999996 999998887777778554
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.99 Score=40.75 Aligned_cols=178 Identities=20% Similarity=0.111 Sum_probs=113.4
Q ss_pred hHHHHhcCCChhH---hhhcHHHHHHHHHHhhccCh-h-----------hhhhhhhHHHHHHHHHHHHHhCCCC-HHHHH
Q 017806 99 TDASFSQGNTPHQ---LAEQNNAAMELINSVTGVDE-E-----------GRSRQRILTFAAKRYANAIERNPED-YDALY 162 (365)
Q Consensus 99 ~~a~~~~g~~~~~---~~g~~~~A~~~~~~al~~~~-~-----------~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~ 162 (365)
+.+.+.+|.++.. ...+..+|+.+|+.+....- . +.....++.+|..+|+++.+..-.. ..+.+
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~ 152 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY 152 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3566666665521 12447889999987766652 1 1111248999999999999875433 34488
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.+|..-.. . ....-....|+..|.++.... ++.+.+++|.+|.. | ......+++|+.+|.+
T Consensus 153 ~l~~~~~~g~~--~-----~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~-----G--~Gv~~d~~~A~~wy~~ 216 (292)
T COG0790 153 RLGLAYLSGLQ--A-----LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK-----G--LGVPRDLKKAFRWYKK 216 (292)
T ss_pred HHHHHHHcChh--h-----hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc-----C--CCCCcCHHHHHHHHHH
Confidence 88988877320 0 000111458999999998876 88999999988854 3 1112233444499999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCcchh-----HHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 243 AVQLNWNSPQALNNWGLALQELSAIVPA-----REKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 243 al~~~p~~~~~~~~lg~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+.+... ...+++++ ++...|.-.+. .....+...|...+.++....+...
T Consensus 217 Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 217 AAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred HHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 998776 88999999 66666632000 0022345788888888777655443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.14 Score=48.68 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 017806 142 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 142 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 221 (365)
.-...|++++...+.+...|..........+. +.+--..|.+++...|++++.|..-+.-.+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--------------~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe--- 151 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--------------YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE--- 151 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCchhHHhhhhhHHh---
Confidence 34567889999999999999888887777777 8888999999999999999999988877776
Q ss_pred hcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 222 MRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 222 ~~g~-~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
.+. .+.|. ..|.++++.+|+++..|...
T Consensus 152 -~n~ni~saR-------alflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 152 -INLNIESAR-------ALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred -hccchHHHH-------HHHHHHhhcCCCChHHHHHH
Confidence 555 66666 77999999999998877643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.1 Score=43.21 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=99.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcC
Q 017806 146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 146 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~g 224 (365)
.|++++-.-+-.++.|+.-+..+...++.....+........-+++..+|+++++.-- .+...++.++..-..+.+-.
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n- 345 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN- 345 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc-
Confidence 4677777778889999988888777777666666677777778999999999987532 34444444444333211100
Q ss_pred CHHHHHHHHHH----------------------------HHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCcchhHHhhh
Q 017806 225 RTKEAEELWKQ----------------------------ATKNYEKAVQLNWNSPQALNNWGLA-LQELSAIVPAREKQT 275 (365)
Q Consensus 225 ~~~~A~~~~~~----------------------------A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~~~~~~~~ 275 (365)
.++...+.+++ |...|.++-+..-....++..-|.. |...++
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD--------- 416 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKD--------- 416 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCC---------
Confidence 12233322222 3444555444332222333322222 222344
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
+..|.+.|+-.+...++.+.........+..++++.-+...+
T Consensus 417 -~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LF 458 (656)
T KOG1914|consen 417 -KETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALF 458 (656)
T ss_pred -hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHH
Confidence 599999999999999998887777778888888776554444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.61 Score=46.56 Aligned_cols=65 Identities=14% Similarity=0.022 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCcchhHH---hhhHHHHHHHHHHHHH------Hh----CCCC-HHHHHHHHHHHHHhhhhhhhhc
Q 017806 252 QALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAAI------QL----QFDF-HRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al------~~----~p~~-~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
..|...+.-+-+.|++.+|+. ..|..+.|+..|.+.- ++ .|++ ...+..+|.-|...|+...+..
T Consensus 825 ~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 345555666777777755554 4555667777666531 11 2322 2345556666666665544433
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.58 Score=43.53 Aligned_cols=148 Identities=19% Similarity=0.193 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
..+++-+.+...++..+|+...+|+.+..++.+.+. ..+..-+..++++++.+|.|..+|..+=.+..
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~------------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH------------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 457888999999999999999999999999998876 13788899999999999999888887777765
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH---hhhHHHHHHHHHHHHHHhCCCC
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---KQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~~p~~ 294 (365)
. +++.+. ..+.++ ....+++..++.+..+|.++..++..+-..+ +.. .......-+..-..|+-.+|++
T Consensus 157 ~-~~~~~~-~~~~El-----~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~-~~g~~~~~~~l~sEle~v~saiFTdp~D 228 (421)
T KOG0529|consen 157 Q-AERSRN-LEKEEL-----EFTTKLINDNFSNYSAWHYRSLLLSTLHPKE-ADGNFMPKELLQSELEMVHSAIFTDPED 228 (421)
T ss_pred H-Hhcccc-cchhHH-----HHHHHHHhccchhhhHHHHHHHHHHHhcccc-ccCccCCHHHHHHHHHHHHHHHhcCccc
Confidence 5 111211 122222 7788899989999999999999888532210 000 1122345566677788889999
Q ss_pred HHHHHHHHHHH
Q 017806 295 HRAIYNLGTVL 305 (365)
Q Consensus 295 ~~~~~~lg~~~ 305 (365)
..+|+..-+.+
T Consensus 229 qS~WfY~rWLl 239 (421)
T KOG0529|consen 229 QSCWFYHRWLL 239 (421)
T ss_pred cceeeehHHhh
Confidence 99888744433
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.83 Score=34.96 Aligned_cols=86 Identities=21% Similarity=0.176 Sum_probs=60.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-
Q 017806 135 SRQRILTFAAKRYANAIERNPE------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL- 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~- 201 (365)
+..|-|++|...|.++++.... +.-++..|+.++..+|+ |++++..-.++|..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr--------------y~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR--------------YDECLQSADRALRYF 85 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHHH
Confidence 3346688888888888875422 34578889999999999 99988888888753
Q ss_pred ------CCCCHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 202 ------CPTLHD----AFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 202 ------~p~~~~----~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
+.+... +.++.+.++.. +|+.++|+..|+.|.+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~----~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEG----LGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Confidence 444433 45678999999 9999999965555443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.21 Score=34.95 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
...+.-+-. .|++.+|+.+|+.|+..+.+++...|++..-......+...+.+
T Consensus 10 a~~AVe~D~----~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 10 AINAVKAEK----EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 334444445 99999999999999999999999999988766555555555444
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.036 Score=47.26 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
..++.+.|.+.|.+++++-|+....|+.+|......|+ ++.|...|++.++++|.+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~--------------~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE--------------FDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc--------------HHHHHHHHHHHHcCCcccc
Confidence 34788999999999999999999999999999999999 9999999999999999863
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.14 Score=47.88 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=109.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHH-HHHh---CCCCHH---HHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYAN-AIER---NPEDYD---ALYNW 164 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~-al~~---~p~~~~---~~~~l 164 (365)
+...|-+++++..++.++ .+.|++..|.++.++|+-....+.... +..-...... ...+ .+.|-. +.+..
T Consensus 33 l~~~PyHidtLlqls~v~-~~~gd~~~A~~lleRALf~~e~~~~~~--F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVY-RQQGDHAQANDLLERALFAFERAFHPS--FSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHH--hhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 578999999999999999 599999999999999876644332110 1000000000 0111 133333 44555
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFY-NWAIAISDRAKMRGRTKEAEELWKQATKN-YE 241 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~-~lg~~~~~~~~~~g~~~~A~~~~~~A~~~-~~ 241 (365)
...+.+.|- +..|.++++=.+.++|. ++-... .+-....+ .++|+--+..++..... ++
T Consensus 110 i~~L~~RG~--------------~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr----s~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 110 IQSLGRRGC--------------WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR----SRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHHHhcCc--------------HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh----cCCHHHHHHHHHhHhhhhhh
Confidence 566667777 99999999999999998 665433 33333445 78888777554432221 11
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcc-----hhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIV-----PAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
..+.. .|..-+..+.++..+++.+ .......+.+.|...+++|+...|.
T Consensus 172 ~~~~~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 172 NWLSL---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhh---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 11222 3456667888888887730 0111223336888889999887664
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.1 Score=35.05 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
.....+++++++....+ .....+.|.+++..++ -.|. .-+..+.|+..+++ .++|+.++
T Consensus 31 s~~s~f~lAwaLV~S~~-----------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~---- 91 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRD-----------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSL---- 91 (149)
T ss_pred hHHHHHHHHHHHHcccc-----------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHH----
Confidence 35667889998887554 2338899999999997 4444 46788999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
++.+..++.+|++..+....-.+.-+
T Consensus 92 ---~yvd~ll~~e~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 92 ---RYVDALLETEPNNRQALELKETIEDK 117 (149)
T ss_pred ---HHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 77999999999998876554444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.87 E-value=2.2 Score=38.38 Aligned_cols=123 Identities=17% Similarity=0.022 Sum_probs=77.4
Q ss_pred hhhhHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHhc-CccccCCCCchhhhHHHHHHHHHHHHHHh----C
Q 017806 136 RQRILTFAAKRYANAIERN-PED-------YDALYNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRL----C 202 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~-p~~-------~~~~~~lg~~~~~~~-~~~~a~~~~~~~~~~~~~A~~~~~~al~~----~ 202 (365)
++|+++.|..++.++-.+. ..+ .+..++.|......+ + ++.|+.++++++++ .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~--------------~~~a~~wL~~a~~~l~~~~ 70 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK--------------YEEAVKWLQRAYDILEKPG 70 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC--------------hHHHHHHHHHHHHHHHhhh
Confidence 4566777777777665543 223 334566666666666 6 99999999999988 2
Q ss_pred CC----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH
Q 017806 203 PT----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 272 (365)
Q Consensus 203 p~----------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~ 272 (365)
+. ...++..|+.++.. .+.++.. ++|+...+.+-...|+.+..+...=.++.+.++.
T Consensus 71 ~~~~~~~~~~elr~~iL~~La~~~l~----~~~~~~~----~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~----- 137 (278)
T PF08631_consen 71 KMDKLSPDGSELRLSILRLLANAYLE----WDTYESV----EKALNALRLLESEYGNKPEVFLLKLEILLKSFDE----- 137 (278)
T ss_pred hccccCCcHHHHHHHHHHHHHHHHHc----CCChHHH----HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh-----
Confidence 21 13456677888877 7766433 3455666666666788777774444444445554
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 017806 273 KQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 273 ~~~~~~~A~~~~~~al~~ 290 (365)
+++.+.+.+.+.-
T Consensus 138 -----~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 138 -----EEYEEILMRMIRS 150 (278)
T ss_pred -----hHHHHHHHHHHHh
Confidence 5555555555543
|
It is also involved in sporulation []. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.6 Score=39.64 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=85.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED-YDALYNWALVLQE 170 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 170 (365)
++.+|.-..++..++. +...-..+|..++++++.....++...++...--..++-..+.|-+. .-....|+.|..+
T Consensus 211 LeIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARk 287 (556)
T KOG3807|consen 211 LEINNECATAYVLLAE---EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARK 287 (556)
T ss_pred HhcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHH
Confidence 6777888888877764 34455778888888888776655433222111111122222222221 2234677888888
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHH----------------
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRAKMRGRTKEAEEL---------------- 232 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~g~~~~A~~~---------------- 232 (365)
+|+ ..+|++.++...+-.|-. ..++-||-.++.. ..-|.+....
T Consensus 288 lGr--------------lrEA~K~~RDL~ke~pl~t~lniheNLiEalLE----~QAYADvqavLakYDdislPkSA~ic 349 (556)
T KOG3807|consen 288 LGR--------------LREAVKIMRDLMKEFPLLTMLNIHENLLEALLE----LQAYADVQAVLAKYDDISLPKSAAIC 349 (556)
T ss_pred hhh--------------HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccccCcchHHHH
Confidence 888 999999998887766632 2233344444333 3322222211
Q ss_pred HH----------------------------HHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 233 WK----------------------------QATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 233 ~~----------------------------~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
|. .|++...++++.+|.-+..+..+-
T Consensus 350 YTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 350 YTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 11 167888899999998887766554
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.06 Score=48.02 Aligned_cols=88 Identities=9% Similarity=0.038 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhcCcchh
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN-WGLALQELSAIVPA 270 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~~~~~~~ 270 (365)
+-.|.++....|+++..|...+..... .|-+.+-- ..|..+++.+|.+++.|.. -+.-+...+++
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~~Y~~k----~k~y~~~~-------nI~~~~l~khP~nvdlWI~~c~~e~~~~ani--- 158 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYAAYVIK----KKMYGEMK-------NIFAECLTKHPLNVDLWIYCCAFELFEIANI--- 158 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHhcCCCCceeeeeeccchhhhhccH---
Confidence 345666777788999999987776666 66666666 7899999999999999987 44556777775
Q ss_pred HHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
+.+...|.++++++|+++..|..
T Consensus 159 -------~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 159 -------ESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred -------HHHHHHHHhhhccCCCCchHHHH
Confidence 99999999999999999988765
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.5 Score=35.13 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.+++...+.-.--+.|+.+..-..-|.++.. .|+|.+|+ ..++......+..+-..-.++.|+.-+|+.
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~----rg~w~eA~-------rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIA----RGNYDEAA-------RILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHH----cCCHHHHH-------HHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 8999999988888999999999999999999 99999999 779998887788898999999999999994
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.68 Score=39.85 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------
Q 017806 138 RILTFAAKRYANAIER----NPE---DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------ 204 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------ 204 (365)
..+++|+..|.-|+-. ... -+..+..+|++|..+++ ......-+..|...|.++++....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-------~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-------EENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-------HHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 4566777766665542 111 25678888999998887 222234466778888888766422
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNWGLA 260 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~ 260 (365)
...+.+.+|.+..+ .|++++|+ ++|.+++...-.+. ..+.+++.-
T Consensus 164 ~~~l~YLigeL~rr----lg~~~eA~-------~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 164 EATLLYLIGELNRR----LGNYDEAK-------RWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred HHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHcCCCCCCcHHHHHHHHH
Confidence 35788899999999 99999999 88999886543322 355555443
|
|
| >cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.36 Score=34.12 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
.|++++|+.+|..||..|..+++..|+...
T Consensus 19 ~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 19 EGRFQEALVCYQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999986544
|
This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.065 Score=45.74 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
.+.+.+.|.+++++.|.....|+.+|....+ .|+++.|. +.|++.++++|.+.
T Consensus 11 ~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa-------~a~~~~L~ldp~D~ 63 (287)
T COG4976 11 AEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAA-------AAYEEVLELDPEDH 63 (287)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHH-------HHHHHHHcCCcccc
Confidence 9999999999999999999999999999999 99999999 88999999998764
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.21 Score=44.00 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=61.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...++++.|..+.++.+.++|.++.-+...|.+|.++|. +..|++.++..++..|+.+.+-.-.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c--------------~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC--------------YHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC--------------chhhHHHHHHHHHhCCCchHHHHHH
Confidence 45667899999999999999999999999999999999999 9999999999999999988765544
Q ss_pred HHH
Q 017806 213 AIA 215 (365)
Q Consensus 213 g~~ 215 (365)
+..
T Consensus 256 ~~l 258 (269)
T COG2912 256 AQL 258 (269)
T ss_pred HHH
Confidence 433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.1 Score=31.41 Aligned_cols=31 Identities=29% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~ 202 (365)
..++.++|.+|..+|+ +++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGR--------------YEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh--------------cchhhHHHHHHHHHH
Confidence 3578999999999999 999999999999863
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.26 Score=47.23 Aligned_cols=82 Identities=26% Similarity=0.216 Sum_probs=68.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..+....|+.+|.+++..-|.....+-+++.++...+= .|..-.|+..+-.|++++|....+|+.|+.
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW-----------~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKW-----------RGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhc-----------cccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 345568889999999999999999999999888876542 011667888889999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEE 231 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~ 231 (365)
++.. ++++.+|++
T Consensus 454 aL~e----l~r~~eal~ 466 (758)
T KOG1310|consen 454 ALNE----LTRYLEALS 466 (758)
T ss_pred HHHH----HhhHHHhhh
Confidence 9999 999999994
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.17 E-value=4.5 Score=39.26 Aligned_cols=163 Identities=12% Similarity=0.022 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHhhccChh----hhhhh----------hhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCccccCC
Q 017806 115 QNNAAMELINSVTGVDEE----GRSRQ----------RILTFAAKRYANAIERNPEDYD-ALYNWALVLQESADNVSLDS 179 (365)
Q Consensus 115 ~~~~A~~~~~~al~~~~~----~~~~~----------~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~a~~ 179 (365)
..+++...|++++..... .++.. ..++....++.+++.+.-.+.. +|.++-+.-.+..-
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG------ 381 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG------ 381 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh------
Confidence 378888899888775432 11111 2355555667777665432222 23333333333333
Q ss_pred CCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
...|...|.+|-+..-....++..-|.+-+.+ .++..-|. +.|+-.++..++.+..-+..-.
T Consensus 382 --------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c---skD~~~Af-------rIFeLGLkkf~d~p~yv~~Yld 443 (656)
T KOG1914|consen 382 --------LKAARKIFKKAREDKRTRHHVFVAAALMEYYC---SKDKETAF-------RIFELGLKKFGDSPEYVLKYLD 443 (656)
T ss_pred --------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHh---cCChhHHH-------HHHHHHHHhcCCChHHHHHHHH
Confidence 78899999999876555556666666665554 78888888 7799999999999999999999
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--CCCC-HHHHHHHHHHHHHhhhh
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDF-HRAIYNLGTVLYGLAED 311 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~-~~~~~~lg~~~~~~g~~ 311 (365)
.+..+++- ..|..+|++++.. .++. .++|..+-..-...|+.
T Consensus 444 fL~~lNdd----------~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 444 FLSHLNDD----------NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhCcc----------hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 99999997 8999999999987 4333 35666665555555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.86 Score=40.71 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
...++..++..+...|+ ++.++..+++.+.++|.+...|..+-.+|.. .|+...|+..|++.
T Consensus 152 ~~~~l~~lae~~~~~~~--------------~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~----~g~~~~ai~~y~~l 213 (280)
T COG3629 152 FIKALTKLAEALIACGR--------------ADAVIEHLERLIELDPYDEPAYLRLMEAYLV----NGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCchHHHHHHHHH
Confidence 35567778888888888 9999999999999999999999999999999 99999999777766
Q ss_pred HHHHHHHHhcCCC
Q 017806 237 TKNYEKAVQLNWN 249 (365)
Q Consensus 237 ~~~~~~al~~~p~ 249 (365)
-+....-+.++|.
T Consensus 214 ~~~~~edlgi~P~ 226 (280)
T COG3629 214 KKTLAEELGIDPA 226 (280)
T ss_pred HHHhhhhcCCCcc
Confidence 5555555555553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.95 E-value=4.5 Score=36.33 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhcC---CCC---
Q 017806 186 ALLEEACKKYDEATRLC----PTL----HDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAVQLN---WNS--- 250 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~~~~~g-~~~~A~~~~~~A~~~~~~al~~~---p~~--- 250 (365)
|+++.|..+|.|+-.+. |+. ...+++.|..... .+ ++++|+..+++|.+.+++.-+.+ |+.
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 33999999999986654 432 4678888888888 88 99999988888888876633222 332
Q ss_pred -HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 251 -PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 251 -~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
..++..++.+|...+.. ..+++|....+.+-.-.|+.+..+..--.++.+.+
T Consensus 83 r~~iL~~La~~~l~~~~~-------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~ 135 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY-------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF 135 (278)
T ss_pred HHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC
Confidence 35677888888888775 33456666666666667887777644444444433
|
It is also involved in sporulation []. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.14 Score=45.77 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=70.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHhcCC
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN-WAIAISDRAKMRGR 225 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~~~~~g~ 225 (365)
|.++-...|+++..|...+......+. |.+--..|.+++...|.|++.|.. .+.-+.. .++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~--------------y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~----~an 157 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKM--------------YGEMKNIFAECLTKHPLNVDLWIYCCAFELFE----IAN 157 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCceeeeeeccchhhh----hcc
Confidence 445555678999999888877777777 999999999999999999999987 4444555 788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
++.+. ..|.++++.+|+++..|...
T Consensus 158 i~s~R-------a~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 158 IESSR-------AMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHH-------HHHHhhhccCCCCchHHHHH
Confidence 88888 77999999999999888754
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.1 Score=35.81 Aligned_cols=77 Identities=12% Similarity=-0.076 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.++.+++. ..+...--+.|+.+..-..-|.++...|++ .+|+..|+...+-.+..+.+.-.++
T Consensus 23 ~~d~~D~e-------~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 23 SADPYDAQ-------AMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred cCCHHHHH-------HHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHH
Confidence 77778877 556666677899999999999999999996 9999999999998888898999999
Q ss_pred HHHHHhhhhhhhhc
Q 017806 303 TVLYGLAEDTLRTG 316 (365)
Q Consensus 303 ~~~~~~g~~~~a~~ 316 (365)
.|++.+|+..+...
T Consensus 86 ~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 86 LCLNAKGDAEWHVH 99 (153)
T ss_pred HHHHhcCChHHHHH
Confidence 99999998876544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.68 Score=38.58 Aligned_cols=101 Identities=24% Similarity=0.117 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
..++..+|..|...|+ ++.|+++|.++...... -.+.+.++-.+... .+++.....+..
T Consensus 36 r~~~~~l~~~~~~~Gd--------------~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ 97 (177)
T PF10602_consen 36 RMALEDLADHYCKIGD--------------LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHH
Confidence 4678899999999999 99999999998886543 34667777777777 999999996655
Q ss_pred HHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 235 QATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
+|-..... +.+.. ....-|..+...++ |.+|...|-.++.-.
T Consensus 98 ka~~~~~~-----~~d~~~~nrlk~~~gL~~l~~r~----------f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 98 KAESLIEK-----GGDWERRNRLKVYEGLANLAQRD----------FKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHhc-----cchHHHHHHHHHHHHHHHHHhch----------HHHHHHHHHccCcCC
Confidence 55444333 22222 23344566666666 499988888776443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.48 E-value=3 Score=32.78 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
.....++++.++.. ..+.++- ++.|..++..++ -.|. ..+..+.|+..+.+++++ +.+++
T Consensus 31 s~~s~f~lAwaLV~----S~~~~dv----~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY----------~~s~~ 92 (149)
T KOG3364|consen 31 SKQSQFNLAWALVR----SRDTEDV----QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY----------SKSLR 92 (149)
T ss_pred hHHHHHHHHHHHHc----ccchHHH----HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH----------HHHHH
Confidence 45678888988877 5444332 233477888886 4454 567889999999999995 99999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 283 KFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 283 ~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+....++..|+|..+....-.+..+..
T Consensus 93 yvd~ll~~e~~n~Qa~~Lk~~ied~it 119 (149)
T KOG3364|consen 93 YVDALLETEPNNRQALELKETIEDKIT 119 (149)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 999999999999988665555544443
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.35 Score=43.27 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 218 (365)
|+.+|.+|+.+.|.++..|+.||.++...|+ .-.|+-+|-+++-..--.+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~--------------~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD--------------DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT---------------HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc--------------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999 9999999999997655568889998888866
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.1 Score=46.94 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=80.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 131 EEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD 207 (365)
Q Consensus 131 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 207 (365)
|+++...+.|+.|+..|++.-...|+. .++.+.+|.++..... .......+++|+..|++.. -.|.-+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~ 553 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-------EQGDPRDFTQALSEFSYLH-GGVGAPL 553 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-------hcCChHHHHHHHHHHHHhc-CCCCCch
Confidence 456788899999999999999999976 4678899998876543 1111134888888888753 3556667
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
-|...+.+|.. +|++++-+ ++|.-|++.-|++|..
T Consensus 554 ~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 554 EYLGKALVYQR----LGEYNEEI-------KSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHhHHHHHHH----hhhHHHHH-------HHHHHHHHhcCCCCcc
Confidence 78888888888 99999999 7788888888887654
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=3.6 Score=40.68 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCccccCCCCchhhhHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLE 189 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~ 189 (365)
..+++.+.-..+-......++..+|..+++.|...+..-|.+ +....++..||..+.. ++
T Consensus 346 TkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--------------LD 411 (872)
T KOG4814|consen 346 TKEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--------------LD 411 (872)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--------------HH
Confidence 344444444444444556677899999999999999876654 5567889999999998 99
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.|.+++++|=+.+|.++-.....-.+... .|.-++|+...
T Consensus 412 ~A~E~~~EAE~~d~~~~l~q~~~~~~~~~----E~~Se~AL~~~ 451 (872)
T KOG4814|consen 412 NAVEVYQEAEEVDRQSPLCQLLMLQSFLA----EDKSEEALTCL 451 (872)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHH----hcchHHHHHHH
Confidence 99999999999999998887777777777 88888888653
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.45 Score=45.10 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
.|+.-.|-+-...+++..|.++......+.++..+|. |+.+...+.-+=.+-.....+...+-...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--------------ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--------------YEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--------------HHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 3777778888888888999999988889999999999 88888877665544334344444455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
.. +|++++|.. .-.-.+...-.++++...-+..-..+|- ++++.-++++.+.++|.
T Consensus 368 ~~----l~r~~~a~s-------~a~~~l~~eie~~ei~~iaa~sa~~l~~----------~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HG----LARWREALS-------TAEMMLSNEIEDEEVLTVAAGSADALQL----------FDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hc----hhhHHHHHH-------HHHHHhccccCChhheeeecccHHHHhH----------HHHHHHHHHHHhccCCh
Confidence 56 788888773 2333333333344444433333333443 47777777777777654
|
|
| >cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.98 Score=31.67 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
++.|+..+.+|++.+ . .|++++|+.+|..|+..|..+++..|+.
T Consensus 3 ~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 3 LQKAIELVKKAIEED---------------N----AGNYEEALRLYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 556777777765433 4 8999999999999999999999988754
|
This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.41 Score=42.78 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
|+.+|.+|+.+.|++...|+.||.+... .|+.-.|+ -+|-+++-..--++.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~av-------y~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAV-------YYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999 99999999 67888886665568899999998888
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.1 Score=37.55 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=66.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFY 210 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 210 (365)
+..+++++|+..++.++....+. .-+-.+||.+...+|. +++|+..+...-. +. .+...-
T Consensus 100 ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k--------------~D~AL~~L~t~~~--~~w~~~~~e 163 (207)
T COG2976 100 VEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK--------------ADAALKTLDTIKE--ESWAAIVAE 163 (207)
T ss_pred HhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHhcccc--ccHHHHHHH
Confidence 44588999999999988654332 3456788999999999 9999988876432 11 234456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
..|.++.. .|+-++|. ..|.++++.++.
T Consensus 164 lrGDill~----kg~k~~Ar-------~ay~kAl~~~~s 191 (207)
T COG2976 164 LRGDILLA----KGDKQEAR-------AAYEKALESDAS 191 (207)
T ss_pred HhhhHHHH----cCchHHHH-------HHHHHHHHccCC
Confidence 68999999 99999999 678888877644
|
|
| >cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.2 Score=31.36 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 189 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
..|+.+..+|++.| . .|+|++|+.+|..|+..|..++...
T Consensus 4 ~~Ai~~a~~Ave~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 4 RDAVQFARLAVQRD---------------Q----EGRYSEAVFYYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHH---------------H----ccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666654 4 9999999999999999999986555
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.54 E-value=9.1 Score=37.51 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC------
Q 017806 186 ALLEEACKKYDEATRL------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------ 247 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~------ 247 (365)
+.|+++...|.-+... .|.+.+.+..++.+... +|+.+-|-.+.++++-.+.+++.-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~----qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF----QGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH----hcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 6689999999888765 45577889999999999 9999999999999999999987432
Q ss_pred --------CCCHHHH---HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhh-hhhh
Q 017806 248 --------WNSPQAL---NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAE-DTLR 314 (365)
Q Consensus 248 --------p~~~~~~---~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~-~~~a 314 (365)
|.+...| +..-..+.+.|- +..|.++++-.+.++|. ++-+...+-.+|.-..+ +.+-
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC----------~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwi 397 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGC----------WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWI 397 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHH
Confidence 2222222 222233334455 59999999999999998 88777666666655442 2221
Q ss_pred hcC-----cCCCCCCCcchHHHHHHHHHHHHHhc
Q 017806 315 TGG-----TVNPREVSPNELYSQSAIYIAAAHAL 343 (365)
Q Consensus 315 ~~~-----~~~~~~~~~~~~~~~a~~~~~~a~~~ 343 (365)
+.. ....+...|+-.|..+..+|-....-
T Consensus 398 I~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 398 IELSNEPENMNKLSQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred HHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCC
Confidence 111 01123345666676666665544443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.50 E-value=7.6 Score=37.27 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhc--CccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 159 DALYNWALVLQESA--DNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 159 ~~~~~lg~~~~~~~--~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.++..+|..+...| + ...+|.|++-.+...|.+ +..+..||.++..- ..+++.|.
T Consensus 8 ~aLlGlAe~~rt~~PPk--------------Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~y---T~N~elAk--- 67 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPK--------------IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRY---TKNVELAK--- 67 (629)
T ss_pred HHHHHHHHHHhhcCChh--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---hccHHHHH---
Confidence 45666777777777 6 999999999999888763 56778888887642 78889998
Q ss_pred HHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 234 KQATKNYEKAVQL---NWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 234 ~~A~~~~~~al~~---~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
.+++++..+ -|++ .++...++.+|....+. +..|...+++++++..+.+.
T Consensus 68 ----sHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s---------~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 68 ----SHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQS---------FPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred ----HHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHhcCCch
Confidence 445555433 2444 45677788898888843 59999999999999877763
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.20 E-value=13 Score=36.64 Aligned_cols=107 Identities=7% Similarity=-0.107 Sum_probs=89.7
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAI 214 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 214 (365)
..|++....-.|++++---......|...+.-....|+ .+-+-..+.++.++. |..+.+...-+.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~--------------~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD--------------VSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc--------------hhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34888888888888887667788889999998888888 888888888888874 667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
.... .|++..|. .++++....-|+...+-.....+..++|+.
T Consensus 375 f~e~----~~n~~~A~-------~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 375 FEES----NGNFDDAK-------VILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHh----hccHHHHH-------HHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 7777 89999999 778888877799988888888888888886
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.8 Score=30.44 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=45.3
Q ss_pred HHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHhcCccccCCCCchhhhHHHHHHHH
Q 017806 118 AAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALV---LQESADNVSLDSTSPSKDALLEEACKK 194 (365)
Q Consensus 118 ~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~---~~~~~~~~~a~~~~~~~~~~~~~A~~~ 194 (365)
.|....++.+.+ +.+.+.++|+..++++++..++..+.|..+|.+ |...|+ |.+.+.+
T Consensus 5 ~ak~~ie~GlkL-----Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk--------------yr~~L~f 65 (80)
T PF10579_consen 5 QAKQQIEKGLKL-----YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK--------------YREMLAF 65 (80)
T ss_pred HHHHHHHHHHHH-----hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 344455555554 345668999999999999988887777766665 455666 8888877
Q ss_pred HHHHHHh
Q 017806 195 YDEATRL 201 (365)
Q Consensus 195 ~~~al~~ 201 (365)
--+=+++
T Consensus 66 A~~Q~~~ 72 (80)
T PF10579_consen 66 ALQQLEI 72 (80)
T ss_pred HHHHHHH
Confidence 6655544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.61 E-value=2.8 Score=41.42 Aligned_cols=82 Identities=9% Similarity=-0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 261 (365)
|..+++.|...+..-|.+ +....++..+|.. +.+.+.|. +.++.|-+.+|.++-.....-.+.
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~-------E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAV-------EVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHH-------HHHHHHHhhccccHHHHHHHHHHH
Confidence 999999999999876653 5678889999998 88888888 778889999999998888888888
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
...+.- ++|+.+..+....
T Consensus 439 ~~E~~S----------e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDKS----------EEALTCLQKIKSS 457 (872)
T ss_pred HHhcch----------HHHHHHHHHHHhh
Confidence 888886 8888888776654
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.74 Score=33.84 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
.|+|.+|++.+.+............ -....++.++|.++...|++ ++|+..+++|+++.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLA 71 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHH
Confidence 8999999966655543332221111 02356788999999999997 99999999999884
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.25 E-value=14 Score=35.25 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHH--HHHHHHH---------hCC---C
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK--KYDEATR---------LCP---T 204 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~--~~~~al~---------~~p---~ 204 (365)
.-++|+..++.+++..+.+..+.+.. ....+. . |.+|+. .+-+.+. +.| .
T Consensus 395 ~dekalnLLk~il~ft~yD~ec~n~v-~~fvKq-~--------------Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNYDIECENIV-FLFVKQ-A--------------YKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHH-HHHHHH-H--------------HHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 37888888888888888776543321 111111 1 333322 1222222 223 3
Q ss_pred CHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 205 LHDAFYNWAIAI--SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 205 ~~~~~~~lg~~~--~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
+.+.-+.|+.+- +. .|+|.++. -+-....+++| ++.++..+|.+++...++ ++|-.
T Consensus 459 e~eian~LaDAEyLys----qgey~kc~-------~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y----------~eA~~ 516 (549)
T PF07079_consen 459 EEEIANFLADAEYLYS----QGEYHKCY-------LYSSWLTKIAP-SPQAYRLLGLCLMENKRY----------QEAWE 516 (549)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHH-------HHHHHHHHhCC-cHHHHHHHHHHHHHHhhH----------HHHHH
Confidence 455666665543 45 88888888 66888889999 899999999999999995 99999
Q ss_pred HHHH
Q 017806 283 KFRA 286 (365)
Q Consensus 283 ~~~~ 286 (365)
++..
T Consensus 517 ~l~~ 520 (549)
T PF07079_consen 517 YLQK 520 (549)
T ss_pred HHHh
Confidence 8875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.57 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
+++..||.+-.. .++|++|++.|.+|+...++.
T Consensus 2 dv~~~Lgeisle----~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLE----NENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHh
Confidence 567889999999 999999997777777666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >smart00745 MIT Microtubule Interacting and Trafficking molecule domain | Back alignment and domain information |
|---|
Probab=91.05 E-value=2.4 Score=29.74 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
+++|+....+|++. -. .|++++|+.+|..|+..|.+++...|+.
T Consensus 5 ~~~A~~li~~Av~~---------------d~----~g~~~eAl~~Y~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 5 LSKAKELISKALKA---------------DE----AGDYEEALELYKKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 56666666666443 34 8999999999999999999999988763
|
|
| >cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.4 Score=29.76 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+++|+..+.+|++.+ . .|++++|+.+|..|+..|..+++..++
T Consensus 3 l~~Ai~lv~~Av~~D---------------~----~g~y~eA~~lY~~ale~~~~~~k~e~~ 45 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------Q----RGDAAAALSLYCSALQYFVPALHYETD 45 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 567777777776544 3 899999999999999999999988754
|
This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.2 Score=37.74 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
...++=..+...++ ++.|..+.++.+.++|.++.-+.-.|.+|.+ +|.+..|+ ..
T Consensus 183 ll~~lk~~~~~e~~--------------~~~al~~~~r~l~l~P~dp~eirDrGliY~q----l~c~~vAl-------~d 237 (269)
T COG2912 183 LLRNLKAALLRELQ--------------WELALRVAERLLDLNPEDPYEIRDRGLIYAQ----LGCYHVAL-------ED 237 (269)
T ss_pred HHHHHHHHHHHhhc--------------hHHHHHHHHHHHhhCCCChhhccCcHHHHHh----cCCchhhH-------HH
Confidence 34455556666677 9999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHH
Q 017806 240 YEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~ 259 (365)
++..++.-|+.+.+-.....
T Consensus 238 l~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 238 LSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHhCCCchHHHHHHHH
Confidence 88888889998876554443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.78 E-value=17 Score=35.39 Aligned_cols=230 Identities=13% Similarity=0.099 Sum_probs=130.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (365)
....|.++-.++..+.++ ...|+.+.|+..++..+. ... +..-+.+|..|...+......+-...
T Consensus 260 ~~~~p~ga~wll~~ar~l-~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~ 337 (546)
T KOG3783|consen 260 RKRYPKGALWLLMEARIL-SIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSH 337 (546)
T ss_pred HHhCCCCccHHHHHHHHH-HHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhH
Confidence 456777777788888888 589999999999999888 211 33445789999999998888876665
Q ss_pred HHHHHHH-HHHHHhcCcccc-CCCCchhhhHHHHHHHHHHHHHHhCCCCH--------------------H--HHHHHHH
Q 017806 159 DALYNWA-LVLQESADNVSL-DSTSPSKDALLEEACKKYDEATRLCPTLH--------------------D--AFYNWAI 214 (365)
Q Consensus 159 ~~~~~lg-~~~~~~~~~~~a-~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------~--~~~~lg~ 214 (365)
-.+..++ .|+...++-... .++.....--.+.+...+..|-+-.|-.. . .++.+..
T Consensus 338 a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y 417 (546)
T KOG3783|consen 338 AFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAY 417 (546)
T ss_pred HHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHH
Confidence 5555555 555332221111 11122222222222222222111111111 0 1122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh---c-CCCC-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQ---L-NWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~---~-~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
++-. .......+.. .++..++ . |+++ .-.+..+|.++.++|+. ..|..+|.-+++
T Consensus 418 ~Wng--f~~~s~~~l~--------k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~----------~~a~~~f~i~~~ 477 (546)
T KOG3783|consen 418 FWNG--FSRMSKNELE--------KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDS----------EVAPKCFKIQVE 477 (546)
T ss_pred HHhh--cccCChhhHH--------HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 2211 1111122211 1122221 1 2332 33566789999999997 999999999884
Q ss_pred h---CCC----CHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHH-------HHHHHHH
Q 017806 290 L---QFD----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-------VYSSALR 355 (365)
Q Consensus 290 ~---~p~----~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-------~~~~al~ 355 (365)
. ..+ .|.+++.||..++.++.. ..++..++.+|.....+++ ....|+.
T Consensus 478 ~e~~~~~d~w~~PfA~YElA~l~~~~~g~------------------~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~ 539 (546)
T KOG3783|consen 478 KESKRTEDLWAVPFALYELALLYWDLGGG------------------LKEARALLLKAREYASDYELENRLHMRIQAALH 539 (546)
T ss_pred HHHhhccccccccHHHHHHHHHHHhcccC------------------hHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 3 222 267999999999999851 2667788888888876653 3444555
Q ss_pred hhhhhh
Q 017806 356 LVRSMV 361 (365)
Q Consensus 356 ~~~~~~ 361 (365)
.++..+
T Consensus 540 ~~r~~~ 545 (546)
T KOG3783|consen 540 TVRKLL 545 (546)
T ss_pred HHhccC
Confidence 555544
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.59 Score=27.94 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~ 202 (365)
+++..||.+-...++ |++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~--------------f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENEN--------------FEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHH
Confidence 567889999999999 999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.1 Score=26.33 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHH--HHHHHHhCCCC
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKK--YDEATRLCPTL 205 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~--~~~al~~~p~~ 205 (365)
+.|+.+|..+...|+ +++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~k--------------y~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGK--------------YDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHhcccC
Confidence 568889999999999 9999999 55888777754
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.3 Score=47.14 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=88.3
Q ss_pred HHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 017806 188 LEEACK------KYDEA-TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGL 259 (365)
Q Consensus 188 ~~~A~~------~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 259 (365)
+.+|.+ .+.+. -.+.|.....+..|+.++.. .|++++|+..-.+|.-..++.+..+ |+....+.+++.
T Consensus 948 ~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 948 FSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred hhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 666666 55432 33478888999999999999 9999999988888888888888776 566788889998
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
.....++. ..|...+.++..+ .|.-+....+++.++...++...+...
T Consensus 1024 ~~f~~~~~----------~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1024 YEFAVKNL----------SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred HHHhccCc----------cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHH
Confidence 88888886 7888888887765 344455667788887777766555443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.51 E-value=3.1 Score=30.48 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPT---------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
|..|++.+.+....... ...+..++|.++.. .|++++|+..+++|+...++
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Confidence 99998888888776322 14567889999999 99999999777777666554
|
|
| >cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=89.24 E-value=4 Score=28.46 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
.|++++|+.+|..|+..|..++...|+
T Consensus 19 ~g~~~~Al~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 19 DGNYEEALELYKEALDYLLQALKAEKE 45 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 899999999999999999999988876
|
The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear. |
| >PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking | Back alignment and domain information |
|---|
Probab=89.20 E-value=5.4 Score=27.26 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
.|++++|+.+|..|+..+..+++..++.
T Consensus 18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~~~ 45 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYLMQALKSESNP 45 (69)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 9999999999999999999999988653
|
; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E .... |
| >cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=89.15 E-value=5.1 Score=28.05 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+.+|+..+.+|++.+ . .|+|++|..+|..++..|..+++..++
T Consensus 3 l~~A~~l~~~Ave~d---------------~----~~~y~eA~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 3 LEQAAELIRLALEKE---------------E----EGDYEAAFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----HhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 566777777776544 3 799999999999999999999988765
|
This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.75 E-value=31 Score=35.81 Aligned_cols=179 Identities=13% Similarity=0.037 Sum_probs=108.9
Q ss_pred HhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------hhhhhhhHHHHHHHHHHHHHhCCCC-----H
Q 017806 103 FSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------GRSRQRILTFAAKRYANAIERNPED-----Y 158 (365)
Q Consensus 103 ~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~A~~~~~~al~~~p~~-----~ 158 (365)
...+... ....++++|.....++...-+. .....|+++.|++..+.++..-|.+ .
T Consensus 419 ll~aW~~-~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 419 LLQAWLL-ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHH-HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 3334444 4667777777777665443322 1234589999999999999987764 4
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC----CCHHHH--HHHHHHHHHHHHhcCCHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP----TLHDAF--YNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~--~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.+...+|.+..-.|+ +++|.....++.++.. .....| ...+.++.. +|+..-+...
T Consensus 498 ~~~sv~~~a~~~~G~--------------~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~----qGq~~~a~~~ 559 (894)
T COG2909 498 VALSVLGEAAHIRGE--------------LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA----QGQVARAEQE 559 (894)
T ss_pred hhhhhhhHHHHHhch--------------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH----hhHHHHHHHH
Confidence 467788888888999 9999999999988732 223333 334666666 7844444332
Q ss_pred HHHHHHHHHH----HHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh----CCC--CHH-HHHHH
Q 017806 233 WKQATKNYEK----AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFD--FHR-AIYNL 301 (365)
Q Consensus 233 ~~~A~~~~~~----al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~-~~~~l 301 (365)
+.|.. -+...|-+.......+.++...-++ +.+.....+.++. .|. ... ++++|
T Consensus 560 -----~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~----------~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 560 -----KAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL----------DLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred -----HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH----------hhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 22322 2333454444444444444444444 5555555555544 222 222 33588
Q ss_pred HHHHHHhhhhhhhh
Q 017806 302 GTVLYGLAEDTLRT 315 (365)
Q Consensus 302 g~~~~~~g~~~~a~ 315 (365)
+.+.+..|+.+.+.
T Consensus 625 A~l~~~~Gdl~~A~ 638 (894)
T COG2909 625 AELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHhcCCHHHHH
Confidence 99999999877654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.73 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
.+.+.+|.++...|+ +++|...+++
T Consensus 2 ~a~~~la~~~~~~G~--------------~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGD--------------PDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHhC
Confidence 467899999999999 9999998763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=88.13 E-value=3.3 Score=28.96 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhccChhhhhhh--hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 117 NAAMELINSVTGVDEEGRSRQ--RILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
..|..+..+|+..+..+.+.. -.|.+|++.+.+++...|+++.-......+..-+.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~ 61 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKR 61 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 356677777777766654332 44667777777778888988776555555544433
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=88.03 E-value=2.1 Score=25.22 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHHHHhcCCC
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKN--YEKAVQLNWN 249 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~--~~~al~~~p~ 249 (365)
+.++.+|..+.. .|++++|+ +. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~----~~ky~~A~-------~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQ----KGKYDEAI-------HFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHH----TT-HHHHH-------HHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHH----HhhHHHHH-------HHHHHHHHHHhccc
Confidence 568899999999 99999999 66 3355555554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=4.7 Score=43.13 Aligned_cols=143 Identities=15% Similarity=0.032 Sum_probs=99.5
Q ss_pred HHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 017806 142 FAAKRYANA-IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNW 212 (365)
Q Consensus 142 ~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 212 (365)
+++..+.+. -.+.|.....+..++.++..+++ +++|+..-.++.-+ .|+....+.++
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d--------------~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD--------------NQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc--------------hHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 333455533 33578889999999999999999 99999998888655 24566788889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
+..... .++...|+..+.+|.....-.. +..|.-+....+++.++...+++ +.|+++.+.|+..+
T Consensus 1022 al~~f~----~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~----------d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1022 ALYEFA----VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA----------DTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHh----ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH----------HHHHHHHHHHHHHH
Confidence 988888 8888888855544433222111 12455567778999999888886 99999999999864
Q ss_pred CC--------CHHHHHHHHHHHHHhhhhh
Q 017806 292 FD--------FHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 292 p~--------~~~~~~~lg~~~~~~g~~~ 312 (365)
-. ....+..++......++..
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence 21 2334455555555555443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=87.32 E-value=11 Score=35.54 Aligned_cols=61 Identities=10% Similarity=-0.047 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
.-.|..||.. +++.+.|+ .+..+.+-++|.++.-+...+.++..+.++ .+|-+.+.-+.
T Consensus 231 etklv~CYL~----~rkpdlAL-------nh~hrsI~lnP~~frnHLrqAavfR~LeRy----------~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLR----MRKPDLAL-------NHSHRSINLNPSYFRNHLRQAAVFRRLERY----------SEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhh----cCCCchHH-------HHHhhhhhcCcchhhHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 4467888888 99999999 888999999999999999999999999996 88777766655
Q ss_pred Hh
Q 017806 289 QL 290 (365)
Q Consensus 289 ~~ 290 (365)
-+
T Consensus 290 ym 291 (569)
T PF15015_consen 290 YM 291 (569)
T ss_pred HH
Confidence 33
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.26 E-value=4.8 Score=40.29 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
..+|.++|..+..+.. |++|.++|.+.
T Consensus 796 e~A~r~ig~~fa~~~~--------------We~A~~yY~~~ 822 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMME--------------WEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHhc
Confidence 4577777777777777 77777777765
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=87.22 E-value=6.2 Score=37.12 Aligned_cols=83 Identities=18% Similarity=0.095 Sum_probs=64.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHhC-----------CC--C-----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERN-----------PE--D-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~-----------p~--~-----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~ 194 (365)
.+++++.|..|+.-|..+|++- |. + ...--.|..||..+++ .+-|+.+
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk--------------pdlALnh 250 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK--------------PDLALNH 250 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC--------------CchHHHH
Confidence 4566777777777777666642 11 1 1123467889999999 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 195 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
--+.|-++|.....+...+.++.. +.+|.+|-..+
T Consensus 251 ~hrsI~lnP~~frnHLrqAavfR~----LeRy~eAarSa 285 (569)
T PF15015_consen 251 SHRSINLNPSYFRNHLRQAAVFRR----LERYSEAARSA 285 (569)
T ss_pred HhhhhhcCcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 999999999999999999999999 99999998553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.09 E-value=5.5 Score=33.69 Aligned_cols=72 Identities=15% Similarity=0.044 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAI 214 (365)
Q Consensus 140 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~ 214 (365)
-+.|...|-++-... -++++..+.||..|... + .++++..+-+++++.+. +++++..|+.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D--------------~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas 186 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKR-D--------------PEKTIQLLLRALELSNPDDNFNPEILKSLAS 186 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-C--------------HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 355666655443322 25688889999888864 4 89999999999998544 6999999999
Q ss_pred HHHHHHHhcCCHHHHH
Q 017806 215 AISDRAKMRGRTKEAE 230 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~ 230 (365)
++.. +|+++.|-
T Consensus 187 ~~~~----~~~~e~AY 198 (203)
T PF11207_consen 187 IYQK----LKNYEQAY 198 (203)
T ss_pred HHHH----hcchhhhh
Confidence 9999 99998874
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=86.50 E-value=7 Score=39.47 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=88.4
Q ss_pred CCChhHhhhcHHHHHHHHHHhhccChh--hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcccc------
Q 017806 106 GNTPHQLAEQNNAAMELINSVTGVDEE--GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL------ 177 (365)
Q Consensus 106 g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a------ 177 (365)
|..+ .+.|+++.|+..|-.+-.+... +-...+++.+|+..+...-..+. ....+-.++.-|...|++..+
T Consensus 713 g~hl-~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 713 GDHL-EQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred hHHH-HHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHh
Confidence 4444 4677788888777655333221 11223455566555544332211 112233344444444442111
Q ss_pred ------CCCCchhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHHHHHH-
Q 017806 178 ------DSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIAISDRAKMRGRTKEAEELW------KQATKNYEKA- 243 (365)
Q Consensus 178 ------~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~g~~~~A~~~~------~~A~~~~~~a- 243 (365)
....+.+.|+|..|...-.+.. .|.. ...|...+.-+.. .|+|.+|.++| ++||..|.+.
T Consensus 791 ~~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedlde----hgkf~eaeqlyiti~~p~~aiqmydk~~ 864 (1636)
T KOG3616|consen 791 ADLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDE----HGKFAEAEQLYITIGEPDKAIQMYDKHG 864 (1636)
T ss_pred cchhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHh----hcchhhhhheeEEccCchHHHHHHHhhC
Confidence 1111222223444444333332 2322 2334445555555 88888888775 5677777653
Q ss_pred -----H----hcCCC-CHHHHHHHHHHHHHhcCcchhHH---hhhHHHHHHHHHH
Q 017806 244 -----V----QLNWN-SPQALNNWGLALQELSAIVPARE---KQTIVRTAISKFR 285 (365)
Q Consensus 244 -----l----~~~p~-~~~~~~~lg~~~~~~~~~~~~~~---~~~~~~~A~~~~~ 285 (365)
+ +..|+ -.+....+|.-|...|+.+.|+. +.|+|..|+..|+
T Consensus 865 ~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk 919 (1636)
T KOG3616|consen 865 LDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYK 919 (1636)
T ss_pred cchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhh
Confidence 1 12233 24677889999999999877775 5566666655544
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.29 E-value=27 Score=32.04 Aligned_cols=104 Identities=23% Similarity=0.047 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-------------
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC------------- 202 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~------------- 202 (365)
+..+..+-++....++++||..+.++..|+.--.. - ..+|...|++|++..
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--T--------------i~~AE~l~k~ALka~e~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT--T--------------IVDAERLFKQALKAGETIYRQSQQCQHQ 259 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--h--------------HHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 34556666777888999999999988887654332 2 556666666665431
Q ss_pred ----------CCCHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcC
Q 017806 203 ----------PTLHDA--FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSA 266 (365)
Q Consensus 203 ----------p~~~~~--~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~ 266 (365)
..+... -..|+.+..+ +|+..+|+ +.++...+..|-. ..++-|+-.++..+.-
T Consensus 260 ~~~~da~~rRDtnvl~YIKRRLAMCARk----lGrlrEA~-------K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 260 SPQHEAQLRRDTNVLVYIKRRLAMCARK----LGRLREAV-------KIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred ccchhhhhhcccchhhHHHHHHHHHHHH----hhhHHHHH-------HHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 112222 3345666666 99999999 6677776666521 2344455555555444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.04 E-value=0.94 Score=24.33 Aligned_cols=24 Identities=21% Similarity=0.008 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHH
Q 017806 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285 (365)
Q Consensus 252 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (365)
.+.+++|.++...|++ ++|...++
T Consensus 2 ~a~~~la~~~~~~G~~----------~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDP----------DEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHh
Confidence 5678999999999997 99988775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=85.83 E-value=6.6 Score=27.50 Aligned_cols=46 Identities=30% Similarity=0.235 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~ 254 (365)
+++|+..+++|+.-| . .|++++|+.+|..|++.|.. +.+|......
T Consensus 3 l~kai~Lv~~A~~eD---------------~----~gny~eA~~lY~~ale~~~~--ekn~~~k~~i 48 (75)
T cd02680 3 LERAHFLVTQAFDED---------------E----KGNAEEAIELYTEAVELCIN--TSNETMDQAL 48 (75)
T ss_pred HHHHHHHHHHHHHhh---------------H----hhhHHHHHHHHHHHHHHHHH--hcChhhHHHH
Confidence 567788888876544 3 89999999999999999887 3455544433
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.75 E-value=11 Score=39.60 Aligned_cols=31 Identities=6% Similarity=-0.149 Sum_probs=24.2
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhh
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVT 127 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al 127 (365)
-+.+..|..+|...+ +.|...+|++-|-++-
T Consensus 1101 ~n~p~vWsqlakAQL-~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQL-QGGLVKDAIESYIKAD 1131 (1666)
T ss_pred hCChHHHHHHHHHHH-hcCchHHHHHHHHhcC
Confidence 355778888888884 8888999998887663
|
|
| >cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=85.03 E-value=3.2 Score=29.41 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
.|+.|..+..+|+..+. .|+.++|+..|++++..+.+++.+.-
T Consensus 4 ~~~~A~~~I~kaL~~dE-------------------~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 4 YYKQAFEEISKALRADE-------------------WGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHHHHHHHHhhhhh-------------------cCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 37788888888776553 89999999999999999999988753
|
This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=84.88 E-value=26 Score=30.65 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH---------------HhcC
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRA---------------KMRG 224 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~---------------~~~g 224 (365)
+..++.+..+.|+ |++.+.++++++..++. +.+=.+.|+.+|-... +..+
T Consensus 4 li~~Aklaeq~eR--------------y~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 4 LIYLAKLAEQAER--------------YDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHTTH--------------HHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--------------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 5678888899998 99999999999999876 3344444555543311 1111
Q ss_pred C----HHHHHHHH------------HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 225 R----TKEAEELW------------KQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 225 ~----~~~A~~~~------------~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
+ ....+..| +..+......+--...+ ...+-..|..|..+-.+.....+..-.+.|...|
T Consensus 70 ~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY 149 (236)
T PF00244_consen 70 KGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAY 149 (236)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhh
Confidence 1 11111111 11222222211111112 2234457888877777765555666678899999
Q ss_pred HHHHHh-----CCCCHH---HHHHHHHHHHH-hhhhhhhh
Q 017806 285 RAAIQL-----QFDFHR---AIYNLGTVLYG-LAEDTLRT 315 (365)
Q Consensus 285 ~~al~~-----~p~~~~---~~~~lg~~~~~-~g~~~~a~ 315 (365)
++|+.+ .|.+|- ...|.+..|+. +|+..+|.
T Consensus 150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~ 189 (236)
T PF00244_consen 150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAI 189 (236)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHH
T ss_pred hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998865 577763 44455555544 44444443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.34 E-value=24 Score=33.71 Aligned_cols=75 Identities=8% Similarity=0.065 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Q 017806 146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 146 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
.|++++...|-.+..|+.-...+...++ -+.|+...++++...|. ....++.++.- ..+
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd--------------~q~al~tv~rg~~~sps---L~~~lse~yel----~nd 348 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISD--------------KQKALKTVERGIEMSPS---LTMFLSEYYEL----VND 348 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccH--------------HHHHHHHHHhcccCCCc---hheeHHHHHhh----ccc
Confidence 4678888888889999988888888888 88888888888877776 55566666655 555
Q ss_pred HHHHHHHHHHHHHHHH
Q 017806 226 TKEAEELWKQATKNYE 241 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~ 241 (365)
-++.-.+|++.+..+.
T Consensus 349 ~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 349 EEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 5555555655444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.09 E-value=16 Score=30.39 Aligned_cols=94 Identities=13% Similarity=-0.104 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
-.++..+|..|.+ .|++++|+ +.|.++...... -.+.+.++-.+....+++ .....
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~-------k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~----------~~v~~ 94 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEAL-------KAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW----------SHVEK 94 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHH-------HHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH----------HHHHH
Confidence 4678899999999 99999999 566665544322 246777778888888886 88888
Q ss_pred HHHHHHHhC--CCCHHH----HHHHHHHHHHhhhhhhhhcCcCC
Q 017806 283 KFRAAIQLQ--FDFHRA----IYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 283 ~~~~al~~~--p~~~~~----~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
+..++-.+- ..++.. ...-|..+...+++..+...+..
T Consensus 95 ~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 95 YIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 878776653 233322 22335555666666665554433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.96 E-value=2 Score=39.27 Aligned_cols=113 Identities=18% Similarity=0.029 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHhc
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-------------------TLHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~~~~~ 223 (365)
+.|...+..++ |+.|..-|.+++..-. .-...+.+++.+-.. .
T Consensus 227 ~~~~~~~kk~~--------------~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk----~ 288 (372)
T KOG0546|consen 227 NIGNKEFKKQR--------------YREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLK----V 288 (372)
T ss_pred ccchhhhhhcc--------------HhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccc----c
Confidence 44555666677 8888888888765311 112345566777777 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
+.+..|+ ..-..+++.++....+++.++..+....++ ++|++.++.+....|++..+...+..
T Consensus 289 ~~~~~a~-------~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~----------~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 289 KGRGGAR-------FRTNEALRDERSKTKAHYRRGQAYKLLKNY----------DEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred cCCCcce-------eccccccccChhhCcHHHHHHhHHHhhhch----------hhhHHHHHHhhccCcchHHHHHHHHH
Confidence 8888887 555566778888999999999999999996 99999999999999999887776666
Q ss_pred HHHHhhh
Q 017806 304 VLYGLAE 310 (365)
Q Consensus 304 ~~~~~g~ 310 (365)
+-....+
T Consensus 352 ~~~~~~~ 358 (372)
T KOG0546|consen 352 VRQKKKQ 358 (372)
T ss_pred hhhHHHH
Confidence 5555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.78 E-value=59 Score=33.85 Aligned_cols=169 Identities=15% Similarity=0.042 Sum_probs=107.0
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHH----------------HHhCC---
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANA----------------IERNP--- 155 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~a----------------l~~~p--- 155 (365)
.+...+.+..-...+ ...|..++||++.-+| |+++.|.+..++. +..-|
T Consensus 343 ~~~~~~lH~~Aa~w~-~~~g~~~eAI~hAlaA-----------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~ 410 (894)
T COG2909 343 AARLKELHRAAAEWF-AEHGLPSEAIDHALAA-----------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAEL 410 (894)
T ss_pred CCchhHHHHHHHHHH-HhCCChHHHHHHHHhC-----------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHH
Confidence 344455565555555 4778888888766544 3344444433332 11222
Q ss_pred --CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHhcC
Q 017806 156 --EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------LHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 156 --~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~~~~~g 224 (365)
.++..-...++......+ +.+|..+..++-..-+. .+...--.|.+... .|
T Consensus 411 l~~~P~Lvll~aW~~~s~~r--------------~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~----~~ 472 (894)
T COG2909 411 LASTPRLVLLQAWLLASQHR--------------LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN----RG 472 (894)
T ss_pred HhhCchHHHHHHHHHHHccC--------------hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh----cC
Confidence 234455566677777777 99999888887665433 23445556777777 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC----CCCH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWN-----SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ----FDFH 295 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~ 295 (365)
+.++|+ +..+.++..-|. ...++..+|.+..-.|++ ++|..+.+++.++. .-+-
T Consensus 473 ~~e~a~-------~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~----------~~Al~~~~~a~~~a~~~~~~~l 535 (894)
T COG2909 473 DPEEAE-------DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGEL----------TQALALMQQAEQMARQHDVYHL 535 (894)
T ss_pred CHHHHH-------HHHHHHHHhcccccchhhhhhhhhhhHHHHHhchH----------HHHHHHHHHHHHHHHHcccHHH
Confidence 999999 556666665554 346777888889889986 99999999888873 2222
Q ss_pred HH--HHHHHHHHHHhhh
Q 017806 296 RA--IYNLGTVLYGLAE 310 (365)
Q Consensus 296 ~~--~~~lg~~~~~~g~ 310 (365)
.+ ....+.++...|+
T Consensus 536 ~~~~~~~~s~il~~qGq 552 (894)
T COG2909 536 ALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 33 3334666677773
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=83.64 E-value=3.2 Score=22.88 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
|+.+.+...|++++...|.+...|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 457889999999999999999998876543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=83.46 E-value=44 Score=32.11 Aligned_cols=107 Identities=10% Similarity=-0.090 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh---------cCC---CCHHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ---------LNW---NSPQALN 255 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~---------~~p---~~~~~~~ 255 (365)
-++|+..++-++...+.+..+-+..-... ...|.+|+.. +.+.+.+. +-| .+.+.-+
T Consensus 396 dekalnLLk~il~ft~yD~ec~n~v~~fv------Kq~Y~qaLs~-----~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNYDIECENIVFLFV------KQAYKQALSM-----HAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHH------HHHHHHHHhh-----hhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 67899999999999988875544322222 3345555543 22333222 222 2344444
Q ss_pred HHHH--HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 256 NWGL--ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 256 ~lg~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
-++. -++..|+ |.++.-+-.-..+++| .+.++..+|.|++...+..+|-+
T Consensus 465 ~LaDAEyLysqge----------y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 465 FLADAEYLYSQGE----------YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHhccc----------HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 4443 3455666 5999999999999999 79999999999999886654443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=83.34 E-value=2.7 Score=23.17 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
+++.+...|++++...|.+...|......
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 46899999999999999999998876654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.20 E-value=42 Score=31.70 Aligned_cols=123 Identities=12% Similarity=-0.036 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-----C
Q 017806 138 RILTFAAKRYANAIER---------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-----P 203 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-----p 203 (365)
+++.+|..+-...+.. |--.+..|+.+..+|...|+ ...-...+...+... .
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~--------------l~~~rs~l~~~lrtAtLrhd~ 205 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGR--------------LADIRSFLHALLRTATLRHDE 205 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc--------------hHHHHHHHHHHHHHhhhcCcc
Confidence 5566666555544331 11125567888888888887 555454444444331 1
Q ss_pred -CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 204 -TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL----NWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 204 -~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
.-+-..+.|-..|.. .+.|+.|. +...++.-- +...+..++.+|.+..-+.++ .
T Consensus 206 e~qavLiN~LLr~yL~----n~lydqa~-------~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldY----------s 264 (493)
T KOG2581|consen 206 EGQAVLINLLLRNYLH----NKLYDQAD-------KLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDY----------S 264 (493)
T ss_pred hhHHHHHHHHHHHHhh----hHHHHHHH-------HHhhcccCccccccHHHHHHHHHHhhHHHhhcch----------h
Confidence 123344555556666 77788877 555554411 113456777888888888885 9
Q ss_pred HHHHHHHHHHHhCCCCH
Q 017806 279 TAISKFRAAIQLQFDFH 295 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~~ 295 (365)
.|.++|-+|+...|++.
T Consensus 265 sA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 265 SALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhCcchh
Confidence 99999999999999853
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.13 E-value=14 Score=33.18 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
--+..|...|. +.+|++..++++.++|-+...|..|-.++.. .|+--.+++-|++--+.+++
T Consensus 284 kva~~yle~g~--------------~neAi~l~qr~ltldpL~e~~nk~lm~~la~----~gD~is~~khyerya~vlea 345 (361)
T COG3947 284 KVARAYLEAGK--------------PNEAIQLHQRALTLDPLSEQDNKGLMASLAT----LGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHcCC--------------hHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----hccchhhhhHHHHHHHHHHH
Confidence 34455666777 9999999999999999999999999999999 99999999655543333333
Q ss_pred HHhcC
Q 017806 243 AVQLN 247 (365)
Q Consensus 243 al~~~ 247 (365)
-+.++
T Consensus 346 elgi~ 350 (361)
T COG3947 346 ELGID 350 (361)
T ss_pred HhCCC
Confidence 34343
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.65 E-value=4 Score=36.52 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=49.9
Q ss_pred HHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 121 ELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 121 ~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
..|.+.+..-...+...|.+.+|+++.++++.++|-+...+..+-.++..+|+ --.++.+|++-
T Consensus 276 ~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD--------------~is~~khyery 339 (361)
T COG3947 276 QLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD--------------EISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc--------------chhhhhHHHHH
Confidence 33333333333345566999999999999999999999999999999999999 66777777664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.58 E-value=8.8 Score=34.40 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
...++..++..+.. .|+++.++ ..+++.+..+|-+-..|..+=.+|...|+. ..|+..|
T Consensus 152 ~~~~l~~lae~~~~----~~~~~~~~-------~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y 210 (280)
T COG3629 152 FIKALTKLAEALIA----CGRADAVI-------EHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHHHh----cccHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHH
Confidence 35567778888888 88888888 889999999999999999999999999997 8888888
Q ss_pred HHHHHh
Q 017806 285 RAAIQL 290 (365)
Q Consensus 285 ~~al~~ 290 (365)
++.-..
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 887663
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.80 E-value=33 Score=35.30 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
+..++=+..++.-+.+++.....+..|-.+++..|+ +++-...-.++-++.|.++..|.....-..
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~d--------------l~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~ 158 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGD--------------LEKLRQARLEMSEIAPLPPHLWLEWLKDEL 158 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcc--------------hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 344556777888888999999999999999999999 888888888888889999998888777665
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.... .+.-.++. ..|++++. |-+++..|...+..+...+.. ..+.++|+.-...|.+++.-
T Consensus 159 ~mt~-s~~~~~v~-------~~~ekal~-dy~~v~iw~e~~~y~~~~~~~---~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 159 SMTQ-SEERKEVE-------ELFEKALG-DYNSVPIWEEVVNYLVGFGNV---AKKSEDYKKERSVFERALRS 219 (881)
T ss_pred hhcc-CcchhHHH-------HHHHHHhc-ccccchHHHHHHHHHHhcccc---ccccccchhhhHHHHHHHhh
Confidence 5211 25555666 45666654 446677888877777766652 33556678888888888865
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.80 E-value=29 Score=28.84 Aligned_cols=127 Identities=10% Similarity=0.106 Sum_probs=86.3
Q ss_pred hhhcHHHHHHHHHHhhccChh------------hhhhhhhHHHHHHHHHHHHHhCC--CCH--HHHHHHHHHHHHhcCcc
Q 017806 112 LAEQNNAAMELINSVTGVDEE------------GRSRQRILTFAAKRYANAIERNP--EDY--DALYNWALVLQESADNV 175 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~A~~~~~~al~~~p--~~~--~~~~~lg~~~~~~~~~~ 175 (365)
+.+..++|+..|...-.-.-. .....|+-..|+..|..+-...| .-. .+...-+.++...|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs-- 147 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS-- 147 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc--
Confidence 667778888877766544422 12334888999999988876543 222 234445566667777
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 017806 176 SLDSTSPSKDALLEEACKKYDEAT-RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 176 ~a~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~ 254 (365)
|++-..-.+..- .-+|-...+.-.||.+-.+ .|++..|. ++|..... |.+.+...
T Consensus 148 ------------y~dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~-------~~F~qia~-Da~aprni 203 (221)
T COG4649 148 ------------YDDVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAK-------SWFVQIAN-DAQAPRNI 203 (221)
T ss_pred ------------HHHHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHH-------HHHHHHHc-cccCcHHH
Confidence 887666555432 2355567788889999999 99999999 77887655 66677777
Q ss_pred HHHHHHHHHh
Q 017806 255 NNWGLALQEL 264 (365)
Q Consensus 255 ~~lg~~~~~~ 264 (365)
.+++.+.+.+
T Consensus 204 rqRAq~mldl 213 (221)
T COG4649 204 RQRAQIMLDL 213 (221)
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.71 E-value=16 Score=25.83 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHhcCCHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIA---ISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~---~~~~~~~~g~~~~A~~~ 232 (365)
.++|+..++++++..++..+-+.-||.+ |.. .|+|.+.+.+
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e----~Gkyr~~L~f 65 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHME----WGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 9999999999999998887777666654 455 8888888754
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.48 E-value=40 Score=30.32 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH----------------
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---------------- 272 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~---------------- 272 (365)
-..+..++++ .|+|.+|+.....-+..+.+ +...++-..++..=..+|....+......
T Consensus 128 e~Kli~l~y~----~~~YsdalalIn~ll~ElKk-~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp 202 (421)
T COG5159 128 ECKLIYLLYK----TGKYSDALALINPLLHELKK-YDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP 202 (421)
T ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHHHHHh-hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH
Confidence 3456777777 99999999765544444433 22234445555555555555555421111
Q ss_pred ---------------hhhHHHHHHHHHHHHHHhCC---CCHHH-----HHHHHHHHHHhhhhhhhhc
Q 017806 273 ---------------KQTIVRTAISKFRAAIQLQF---DFHRA-----IYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 273 ---------------~~~~~~~A~~~~~~al~~~p---~~~~~-----~~~lg~~~~~~g~~~~a~~ 316 (365)
...+|..|..+|-++++-.. .+..+ |..|..++.+.-+..++..
T Consensus 203 qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl 269 (421)
T COG5159 203 QLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVL 269 (421)
T ss_pred HHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34678999999999987532 23333 3344555555544444433
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.23 E-value=20 Score=31.84 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=83.0
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcC
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ-ESAD 173 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~ 173 (365)
.-++++.+..+|..++ ..|++.+|..+|-.+- ++... ....-.+.-..+-.|...+.+..++.+.+ .+++
T Consensus 86 ~~Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~--~~~~~------~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n 156 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLW-KEGNYYEAERHFLLGT--DPSAF------AYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN 156 (260)
T ss_dssp TT--HHHHHHHHHHHH-HTT-HHHHHHHHHTS---HHHHH------HHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB
T ss_pred CCCCHHHHHHHHHHHH-hhccHHHHHHHHHhcC--ChhHH------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Confidence 3467888999999996 9999999998887431 11111 11111223334567888888888876644 5577
Q ss_pred ccccCCCCchhhhHHHHHHHHHHHHHHh----CC----------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 174 NVSLDSTSPSKDALLEEACKKYDEATRL----CP----------TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 174 ~~~a~~~~~~~~~~~~~A~~~~~~al~~----~p----------~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
...|...+...++. .| .....++.+..+...+ . .+ +...|..-...
T Consensus 157 --------------~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~-e-~~----~~~~F~~L~~~ 216 (260)
T PF04190_consen 157 --------------LRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTC-E-RD----NLPLFKKLCEK 216 (260)
T ss_dssp --------------HHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHH-H-HT-----HHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHH-h-cC----cHHHHHHHHHH
Confidence 88888877766655 33 2333344444333331 0 22 34567777788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
|...|+.+|.....+..+|..|+....
T Consensus 217 Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 217 YKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp THH---HHHHTHHHHHHHHHHHH---S
T ss_pred hCccccccHHHHHHHHHHHHHHCCCCC
Confidence 888898899999999999999998665
|
; PDB: 3LKU_E 2WPV_G. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=80.72 E-value=22 Score=27.86 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH---------HHHhCCCCHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE---------ATRLCPTLHDA 208 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~---------al~~~p~~~~~ 208 (365)
+.....+.+++..+..++.++..+..+..+|.... ..+.+..++. ++.+... ...
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~---------------~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l 84 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD---------------PQKEIERLDNKSNHYDIEKVGKLCEK-AKL 84 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC---------------HHHHHHHHHhccccCCHHHHHHHHHH-cCc
Confidence 34677788888888877777777888888887654 3444555552 1111111 112
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQ 262 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 262 (365)
|.....++.+ .|.+.+|+..+=.-+..++.+++. ..++++.|..++..+.
T Consensus 85 ~~~~~~l~~k----~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKK----DGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHh----hcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444455555 777777776532211122222221 1346667776665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 365 | ||||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 3e-05 |
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-26
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 8/129 (6%)
Query: 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287
+ L++Q ++ E + N L WG L ELS + + +++ AI+KF A
Sbjct: 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA 72
Query: 288 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 347
+ + A++ +G A T P E + + + A +P
Sbjct: 73 LLIDPKKDEAVWCIGNAYTSFAFLT--------PDETEAKHNFDLATQFFQQAVDEQPDN 124
Query: 348 SVYSSALRL 356
+ Y +L +
Sbjct: 125 THYLKSLEM 133
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 94.4 bits (234), Expect = 2e-23
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 22/144 (15%)
Query: 137 QRILTF--AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194
RIL F + N + NP D D L W VL E + S +++EA K
Sbjct: 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS----ISDAKQMIQEAITK 68
Query: 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------- 247
++EA + P +A + A + A + EA+ + AT+ +++AV
Sbjct: 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128
Query: 248 ------WNSPQ---ALNNWGLALQ 262
+PQ GL
Sbjct: 129 KSLEMTAKAPQLHAEAYKQGLGGS 152
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 2e-20
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 25/166 (15%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + A++ NP+D +ALY A + + A +
Sbjct: 24 ALTLFERALKENPQDPEALYWLARTQLKLGL--------------VNPALENGKTLVART 69
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + + A + + + +QA + A ++N GL
Sbjct: 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L A + + A+ L+ D L + +
Sbjct: 130 LLGER----------DKAEASLKQALALE-DTPEIRSALAELYLSM 164
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 8e-19
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 25/166 (15%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + + R P + LE+A +A R+
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGY---LEQALSVLKDAERVN 114
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + + G +AE + ++A+ L ++P+ +
Sbjct: 115 PRYAPLHLQRGLVYALL----GERDKAEA-------SLKQALALE-DTPEIRSALAELYL 162
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + ++ A++++ A++ + L
Sbjct: 163 SMGRL----DE------ALAQYAKALEQAPKDLDLRVRYASALLLK 198
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-15
Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 26/155 (16%)
Query: 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214
+ L + A ++ A + P +A Y A
Sbjct: 2 QTAEQNPLRLGVQLYALGR--------------YDAALTLFERALKENPQDPEALYWLAR 47
Query: 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK- 273
G A E N + V A L RE+
Sbjct: 48 TQLK----LGLVNPALE-------NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG 96
Query: 274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + A+S + A ++ + G V L
Sbjct: 97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 6e-19
Identities = 32/166 (19%), Positives = 50/166 (30%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y A+E + A Y V +EA +++A R
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEM--------------YKEAKDMFEKALRAG 121
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
D FY + + K A ++AV+LN N +A +G+ L
Sbjct: 122 MENGDLFYMLGTVLVKL----EQPKLALP-------YLQRAVELNENDTEARFQFGMCLA 170
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ A+S+F A + A YN G
Sbjct: 171 NEG-----MLDE-----ALSQFAAVTEQDPGHADAFYNAGVTYAYK 206
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 4e-17
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + A+ E+ D Y VL + + A A L
Sbjct: 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--------------PKLALPYLQRAVELN 155
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+A + + + +++ G EA + + + A N G+
Sbjct: 156 ENDTEARFQFGMCLANE----GMLDEALS-------QFAAVTEQDPGHADAFYNAGVTYA 204
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
EK A+ AI +Q D A++ + +
Sbjct: 205 YKENR----EK------ALEMLDKAIDIQPDHMLALHAKKLLGHHH 240
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-14
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 31/166 (18%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ + ++ P E+A + + +A
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGD----------YEKAAEAFTKAIEEN 53
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+ N+A +S + A Y+KA++L+ ++ A G
Sbjct: 54 KEDAIPYINFANLLSSV----NELERALA-------FYDKALELDSSAATAYYGAGNVYV 102
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
K+ A F A++ + Y LGTVL L
Sbjct: 103 VKE-----MYKE-----AKDMFEKALRAGMENGDLFYMLGTVLVKL 138
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 7e-12
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
+ + + ++ L P R G ++A E + KA++ N
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAE-------AFTKAIEEN 53
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
N+ L ++ + E+ A++ + A++L A Y G V
Sbjct: 54 KEDAIPYINFANLLSSVNEL----ER------ALAFYDKALELDSSAATAYYGAGNVYVV 103
Query: 308 L 308
Sbjct: 104 K 104
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 82.1 bits (204), Expect = 1e-18
Identities = 16/166 (9%), Positives = 41/166 (24%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + + D D + + ++ ++ + + +
Sbjct: 27 AVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------------VDRGTELLERSLADA 72
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + + A K + N + G+AL
Sbjct: 73 PDNVKVATVLGLTYVQV----QKYDLAVP-------LLIKVAEANPINFNVRFRLGVALD 121
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L ++ AI F+ A+ L+ + + + +
Sbjct: 122 NLGRF----DE------AIDSFKIALGLRPNEGKVHRAIAFSYEQM 157
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 2e-14
Identities = 17/159 (10%), Positives = 46/159 (28%), Gaps = 35/159 (22%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ ++ P++ L + + A +
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQK--------------YDLAVPLLIKVAEAN 106
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + + +A+ + GR EA + +++ A+ L N + + +
Sbjct: 107 PINFNVRFRLGVALDNL----GRFDEAID-------SFKIALGLRPNEGKVHRAIAFSYE 155
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301
++ E+ A+ F+ A +L + +
Sbjct: 156 QMGRH----EE------ALPHFKKANELDEGASVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 68.2 bits (168), Expect = 7e-14
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 21/121 (17%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
+A ++ D + IA G E E+++
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVK----TGAVDRGTE-------LLERSLADA 72
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
++ + GL ++ + A+ + + LG L
Sbjct: 73 PDNVKVATVLGLTYVQVQKY----DL------AVPLLIKVAEANPINFNVRFRLGVALDN 122
Query: 308 L 308
L
Sbjct: 123 L 123
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 4e-09
Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 28/120 (23%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A E NP +++ + + L +EA + A L
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGR--------------FDEAIDSFKIALGLR 140
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + GR +EA +++KA +L+ A L +
Sbjct: 141 PNEGKVHRAIAFSYEQM----GRHEEALP-------HFKKANELD---EGASVELALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-08
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282
+G + + QA E+ + + G+A + A+ ++
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV----DR------GTE 63
Query: 283 KFRAAIQLQFDFHRAIYNLGTVLYGL 308
++ D + LG +
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQV 89
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 36/166 (21%), Positives = 49/166 (29%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y AIE P A N V + + A +++A L
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGE--------------IWLAIHHFEKAVTLD 199
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P DA+ N + + A Y +A+ L+ N N
Sbjct: 200 PNFLDAYINLGNVLKEA----RIFDRAVA-------AYLRALSLSPNHAVVHGNLACVYY 248
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
E I AI +R AI+LQ F A NL L
Sbjct: 249 EQGLI----------DLAIDTYRRAIELQPHFPDAYCNLANALKEK 284
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y A+ +P N A V E ++ A Y A L
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------------IDLAIDTYRRAIELQ 267
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P DA+ N A A+ ++ G EAE+ Y A++L +LNN +
Sbjct: 268 PHFPDAYCNLANALKEK----GSVAEAED-------CYNTALRLCPTHADSLNNLANIKR 316
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
E ++ A+ +R A+++ +F A NL +VL
Sbjct: 317 EQG-----NIEE-----AVRLYRKALEVFPEFAAAHSNLASVLQQQ 352
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 3e-17
Identities = 39/166 (23%), Positives = 57/166 (34%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y +A+ P+ D N A L + D +E A + Y A +
Sbjct: 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGD--------------MEGAVQAYVSALQYN 131
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P L+ + + GR +EA+ Y KA++ N A +N G
Sbjct: 132 PDLYCVRSDLGNLLKAL----GRLEEAKA-------CYLKAIETQPNFAVAWSNLGCVFN 180
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
I AI F A+ L +F A NLG VL
Sbjct: 181 AQGEI----------WLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y AIE P DA N A L+E + EA Y+ A RLC
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGS--------------VAEAEDCYNTALRLC 301
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT D+ N A ++ G +EA Y KA+++ A +N LQ
Sbjct: 302 PTHADSLNNLANIKREQ----GNIEEAVR-------LYRKALEVFPEFAAAHSNLASVLQ 350
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + + A+ ++ AI++ F A N+G L +
Sbjct: 351 QQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 8e-16
Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + + P++ L + + + L+ + A +
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------------LDRSAHFSTLAIKQN 63
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P L +A+ N G + ++A ++Y A++L + N AL
Sbjct: 64 PLLAEAYSN-----------LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ A+ + +A+Q D + +LG +L L
Sbjct: 113 AAG-----DMEG-----AVQAYVSALQYNPDLYCVRSDLGNLLKAL 148
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 21/121 (17%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
E A + + R P + R + A++ N
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSI----HFQCRRLDRSAHF-------STLAIKQN 63
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
+A +N G +E + + AI +R A++L+ DF NL L
Sbjct: 64 PLLAEAYSNLGNVYKERGQL----------QEAIEHYRHALRLKPDFIDGYINLAAALVA 113
Query: 308 L 308
Sbjct: 114 A 114
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 8e-17
Identities = 25/205 (12%), Positives = 56/205 (27%), Gaps = 28/205 (13%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + A+E+ P++ + A+ + + A +A RL
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNW-----------PPSQNAIDPLRQAIRLN 205
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A+ + + E E+L E+A++ L + +
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKL-------VEEALEKAPGVTDVLRSAAKFYR 258
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322
+K AI + A++ + +G +
Sbjct: 259 RKDEP----DK------AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308
Query: 323 EVSPNELYSQSAIYIAAAHALKPSY 347
+ EL + ++ A +
Sbjct: 309 KRKLLELIGHAVAHLKKADEANDNL 333
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-10
Identities = 22/175 (12%), Positives = 43/175 (24%), Gaps = 35/175 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
K A+E+ P D L + A + + ++A + +A
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--------------PDKAIELLKKALEYI 277
Query: 203 PTLHDAFYNWAIA--------ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254
P ++ R ++ EL A + +KA + N N +
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337
Query: 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI---YNLGTVLY 306
+ E+ A F+ + G
Sbjct: 338 SILASLHALADQY----EE------AEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 6e-09
Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 23/160 (14%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
L + D+ +C Y D + R K ++A +EKA++
Sbjct: 110 LSDVQIYVDKVKHVCEKFSSP-YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
+P+ + +A L + + AI R AI+L D L L+
Sbjct: 169 PKNPEFTSGLAIASYRL-------DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221
Query: 308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 347
+ E+ E + + A P
Sbjct: 222 MREE---------------GEEEGEGEKLVEEALEKAPGV 246
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 7e-06
Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 41/183 (22%)
Query: 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196
++ A A E N + A + + EEA +
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ--------------YEEAEYYFQ 358
Query: 197 EATRLCPT---LHDAFYNW-------------AIAISDRA-KMRGRTKEAEELWKQATKN 239
+ T + AI K+ +++E E++ + K
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418
Query: 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299
+ + N +AL+ + + +Q A ++ A
Sbjct: 419 AKMRLSKNGADSEALHVLAFLQELN-----EKMQQ-----ADEDSERGLESGSLIPSASS 468
Query: 300 NLG 302
G
Sbjct: 469 WNG 471
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-16
Identities = 21/170 (12%), Positives = 41/170 (24%), Gaps = 35/170 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ Y + + + +L + A ++Y A
Sbjct: 59 DIETYFSKVNATKAKSADFEYYGKILMKKGQ--------------DSLAIQQYQAAVDRD 104
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
T D + G + + A + EK ++ P+ G A
Sbjct: 105 TTRLDMYGQ-----------IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312
K A S F ++L+ + + DT
Sbjct: 154 YNKEY----VK------ADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 3e-14
Identities = 21/168 (12%), Positives = 34/168 (20%), Gaps = 32/168 (19%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + + + A+ E A A + + Y
Sbjct: 22 AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY---------DLAQ--KDIETYFSKVNAT 70
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
F G+ + A + Y+ AV + G
Sbjct: 71 KAKSADFEY-----------YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310
AI I+ + Y LG Y E
Sbjct: 120 NKG-----NFPL-----AIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 19/164 (11%), Positives = 44/164 (26%), Gaps = 26/164 (15%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + I D Y + + +A + + L
Sbjct: 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKE--------------YVKADSSFVKVLELK 172
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK-NYEKAVQLNWNSPQALNNWGLAL 261
P ++ + A A + + + A+ +++ + + +A
Sbjct: 173 PNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231
Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
R+K A + ++ + L +AI L L
Sbjct: 232 TIN------RDKVK----ADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 17/150 (11%), Positives = 43/150 (28%), Gaps = 32/150 (21%)
Query: 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218
D + +A L ++ + EA + +++ + A+ +
Sbjct: 4 DVEFRYADFLFKNNN--------------YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE 49
Query: 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278
+ A++ + Y V +G L + ++
Sbjct: 50 ----LAKYDLAQK----DIETYFSKVNATKAKSADFEYYGKILMKK-----GQDSL---- 92
Query: 279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
AI +++AA+ +G+ Y
Sbjct: 93 -AIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 16/123 (13%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + +E P Y A + A Y++ +C
Sbjct: 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG-----------LAKPYYEKLIEVC 209
Query: 203 PTLHDAFY-NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
+ A A ++ + A ++ + L+ + +A++ + L
Sbjct: 210 APGGAKYKDELIEANEYIAYYYTINRDKVK----ADAAWKNILALDPTNKKAIDGLKMKL 265
Query: 262 QEL 264
+
Sbjct: 266 EHH 268
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 72.8 bits (180), Expect = 4e-16
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 36/156 (23%)
Query: 154 NPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212
+P + +A YN + D +EA + Y +A L P +A+YN
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNL 49
Query: 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 272
A + G EA E Y+KA++L+ N+ +A N G A + +
Sbjct: 50 GNAYYKQ----GDYDEAIE-------YYQKALELDPNNAEAWYNLGNAYYKQGDY----D 94
Query: 273 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ AI ++ A++L + A NLG
Sbjct: 95 E------AIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 60.9 bits (149), Expect = 8e-12
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E +P + +A YN + D +EA + Y +A L
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 73
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P +A+YN A +G EA E Y+KA++L+ N+ +A N G A Q
Sbjct: 74 PNNAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPNNAEAKQNLGNAKQ 122
Query: 263 EL 264
+
Sbjct: 123 KQ 124
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 8e-16
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 32/166 (19%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A +A++ +P++ A A + Q ++A + + +A +
Sbjct: 27 ATASIEDALKSDPKNELAWLVRAEIYQYLKV--------------NDKAQESFRQALSIK 72
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + N+ + R R E+ + +A + A N G+
Sbjct: 73 PDSAEINNNYGWFLCGRL---NRPAESMAYFDKALAD-----PTYPTPYIANLNKGICSA 124
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + A + + ++ Q F A L
Sbjct: 125 KQ-----GQFGL-----AEAYLKRSLAAQPQFPPAFKELARTKMLA 160
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 4e-10
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 36/159 (22%)
Query: 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211
E+ + + A+ D +A ++A + P A+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQD--------------YRQATASIEDALKSDPKNELAWLV 47
Query: 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271
A + +A+E ++ +A+ + +S + NN+G L R
Sbjct: 48 RAEIY----QYLKVNDKAQE-------SFRQALSIKPDSAEINNNYGWFLCGRL----NR 92
Query: 272 EKQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLYGL 308
+ +++ F A+ + A N G
Sbjct: 93 PAE-----SMAYFDKALADPTYPTPYIANLNKGICSAKQ 126
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-15
Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 22/169 (13%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A ++ A+ + +L N ++VL++ + + + ++ ++ A ++
Sbjct: 156 AHTCFSGALTHCK-NKVSLQNLSMVLRQLQTD-----SGDEHSRHVMDSVRQAKLAVQMD 209
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGL 259
++Y A G+ + +QA Y +A +++ ++P N
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRAT 266
Query: 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + A+ F A L + +L L
Sbjct: 267 LHKYEESY----------GEALEGFSQAAALDPAWPEPQQREQQLLEFL 305
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 3e-14
Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 26/175 (14%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
++ + + AL L + D EA +A +L
Sbjct: 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPD-------------YSPEAEVLLSKAVKLE 133
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P L +A+ + G A + A+ N +L N + L+
Sbjct: 134 PELVEAWNQLGEVYWKK----GDVTSAHT-------CFSGALTHCKNKV-SLQNLSMVLR 181
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317
+L E V ++ + + A+Q+ R+ Y LG L +T +
Sbjct: 182 QLQTD-SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 1e-11
Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 23/203 (11%)
Query: 110 HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169
H + + S+TG + GR + + +++ D LY +
Sbjct: 8 HHHSSGLVPRGSHMASMTGGQQMGRGSMMA--DEEEEAKHVLQKLQGLVDRLYCFRDSYF 65
Query: 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229
E+ +E+ ++ +E A A+
Sbjct: 66 ETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL----------NVT 115
Query: 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289
+ +A KAV+L +A N G + A + F A+
Sbjct: 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK-----GDVTS-----AHTCFSGALT 165
Query: 290 LQFDFHRAIYNLGTVLYGLAEDT 312
+ ++ NL VL L D+
Sbjct: 166 HCKN-KVSLQNLSMVLRQLQTDS 187
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 26/166 (15%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A K + A E +PE+ A + ++ + EA R
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYRENK--------------FDDCETLFSEAKRKF 368
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + + + +A K Y+ A++L +
Sbjct: 369 PEAPEVPNF-----------FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + + + + A + A +L +A L +
Sbjct: 418 KATLLTRNPTVENFIE-ATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 4e-14
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 36/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + AIE P ++ AL++ + D E +D+A +L
Sbjct: 256 AHEDIKKAIELFP-RVNSYIYMALIMADRND--------------STEYYNYFDKALKLD 300
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+Y+ RG+ + + QA K+++KA +L+ +
Sbjct: 301 SNNSSVYYH-----------RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + + F A + + +L
Sbjct: 350 RENKF----DD------CETLFSEAKRKFPEAPEVPNFFAEILTDK 385
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 7e-13
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 26/160 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
++ A + PE + +A +L + D ++A K+YD A L
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKND--------------FDKALKQYDLAIELE 402
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
L + A + + E + +AT EKA +L+ S QA
Sbjct: 403 NKLDGIYVGIAPLVGKATLLT--RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302
+ I AI+ F + L + +
Sbjct: 461 QQEDI----------DEAITLFEESADLARTMEEKLQAIT 490
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 16/121 (13%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A K+Y AIE + A ++ ++ + EA ++A++L
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-----FIEATNLLEKASKLD 445
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + K +E +A +E++ L + L A
Sbjct: 446 PRSEQAKIG-----------LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494
Query: 263 E 263
Sbjct: 495 A 495
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 26/111 (23%)
Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
+ AL + + ++A K Y+ A L + N
Sbjct: 2 KDKYALALKDKGNQFFRNKK--------------YDDAIKYYNWALELKED-PVFYSN-- 44
Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264
+ K+ + KA++L + + L A + L
Sbjct: 45 ---------LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 18/167 (10%), Positives = 41/167 (24%), Gaps = 13/167 (7%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A E ++ S E YDE+
Sbjct: 129 KFGDIDTATATPTELSTQPAK-ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187
Query: 203 PTLHDAFYNWAIAISDRAKMRGRT-KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
L + N + + +A L+++ + +L +L + G+
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247
Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ A + AI+L + + + ++
Sbjct: 248 FLKNDP----------LGAHEDIKKAIELFPRVN-SYIYMALIMADR 283
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 27/193 (13%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQE-----------SADNVSLDSTSPSKDALL--- 188
+ A+E P+ L A + S +++ D S + +L
Sbjct: 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117
Query: 189 ---------EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--AT 237
+E D AT L + ++K
Sbjct: 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177
Query: 238 KNYEKAVQLNWNSPQALNNWGLALQE--LSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295
NY+++ + + L+N E A + + + K +L+
Sbjct: 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237
Query: 296 RAIYNLGTVLYGL 308
++ + G +
Sbjct: 238 ISLEHTGIFKFLK 250
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-15
Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 22/167 (13%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA-LLEEACKKYDEATRL 201
A + P+ + D E A +
Sbjct: 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167
Query: 202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
P + G + A N +AV+L + Q N G L
Sbjct: 168 NPNDAQLHAS-----------LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216
Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ R ++ A+ + A+ + + R +YN+ +
Sbjct: 217 ANGN-----RPQE-----ALDAYNRALDINPGYVRVMYNMAVSYSNM 253
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 4e-15
Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 35/172 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A+E NP D + ++ S + + A A L
Sbjct: 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNN--------------YDSAAANLRRAVELR 202
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + +++ R +EA + Y +A+ +N + + N ++
Sbjct: 203 PDDAQLWNKLGATLANG----NRPQEALD-------AYNRALDINPGYVRVMYNMAVSYS 251
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314
+S A + AI +Q D R
Sbjct: 252 NMSQY----------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 6e-14
Identities = 20/171 (11%), Positives = 41/171 (23%), Gaps = 30/171 (17%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
AA + + PE +A + L E+ A + A L
Sbjct: 40 AALAFEAVCQAAPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLD 85
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + E A + + Q + A
Sbjct: 86 PKDIAVHAA-----------LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV 134
Query: 263 ELSAIVPAREKQTIVRT-----AISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
++ + E + AA+++ + + +LG +
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 18/177 (10%), Positives = 43/177 (24%), Gaps = 35/177 (19%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
Y ++ L + + A+ L EA ++ +
Sbjct: 6 NNTDYPFEANNPYMYHENPMEEGLSMLKLAN--------------LAEAALAFEAVCQAA 51
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P +A+ + G T+ E A A L+ ++
Sbjct: 52 PEREEAWRS-----------LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319
A++ RA + Q + + + + +++
Sbjct: 101 NEHNA----------NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFF 147
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 26/132 (19%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
+ + Y H+ +++ EA +E Q
Sbjct: 3 MLQNNTDYPFEANNPYMYHENPMEEGLSMLKL----ANLAEAAL-------AFEAVCQAA 51
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
+A + GL E ++ AI A L L
Sbjct: 52 PEREEAWRSLGLTQAENE-----KDGL-----AIIALNHARMLDPKDIAVHAALAVSHTN 101
Query: 308 L-----AEDTLR 314
A +LR
Sbjct: 102 EHNANAALASLR 113
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 23/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A P+ A+ + Q ++ +A L
Sbjct: 227 LLPVLCQAHGLTPQQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 272
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + K+A E ++ +A L A+ + G Q
Sbjct: 273 PQQVVAIAS-----------NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 321
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L V+ + A L AI + L
Sbjct: 322 ALET----------VQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 357
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 3e-14
Identities = 24/162 (14%), Positives = 40/162 (24%), Gaps = 35/162 (21%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
A P+ A+ + Q ++ +A L P
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALET--------------VQRLLPVLCQAHGLTPEQV 378
Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
A + G K+A E ++ +A L A+ + Q L
Sbjct: 379 VAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427
Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
V+ + A L AI + G L
Sbjct: 428 ----------VQRLLPVLCQAHGLTPQQVVAIASNGGGRPAL 459
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 8e-14
Identities = 26/166 (15%), Positives = 41/166 (24%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A PE A+ + Q ++ +A L
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALET--------------VQALLPVLCQAHGLT 170
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + G K+A E ++ +A L A+ + G Q
Sbjct: 171 PEQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L V+ + A L AI + G L
Sbjct: 220 ALET----------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 6e-13
Identities = 23/177 (12%), Positives = 44/177 (24%), Gaps = 35/177 (19%)
Query: 132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 191
+ + + + + PE A+ + Q ++
Sbjct: 46 GVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALET--------------VQRL 91
Query: 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251
+A L P A + K+A E ++ +A L
Sbjct: 92 LPVLCQAHGLTPQQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPEQV 140
Query: 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
A+ + Q L V+ + A L + AI + G L
Sbjct: 141 VAIASHDGGKQALET----------VQALLPVLCQAHGLTPEQVVAIASNGGGKQAL 187
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 24/161 (14%), Positives = 42/161 (26%), Gaps = 36/161 (22%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A PE A+ + Q ++ +A L
Sbjct: 363 LLPVLCQAHGLTPEQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 408
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + K+A E ++ +A L A+ + G
Sbjct: 409 PEQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP 457
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-AIYNLG 302
L +I +S+ A+ + H A+ LG
Sbjct: 458 ALESI----------VAQLSRPDPALAALTNDHLVALACLG 488
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 35/176 (19%)
Query: 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 192
R+ + +LT A + ++ + + V + +A+
Sbjct: 13 ARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVT--------------AVEAVHAWRN 58
Query: 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252
L P A + K+A E ++ +A L
Sbjct: 59 ALTGAPLNLTPEQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPQQVV 107
Query: 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
A+ + Q L V+ + A L + AI + L
Sbjct: 108 AIASHDGGKQALET----------VQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 153
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 4e-15
Identities = 17/168 (10%), Positives = 40/168 (23%), Gaps = 27/168 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
AI ++P D +A + E+ + + A L
Sbjct: 84 TILFMEAAILQDPGDAEAWQFLGITQAENEN--------------EQAAIVALQRCLELQ 129
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + + A + + ++ N + N +
Sbjct: 130 PNNLKALMA-----------LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI--YNLGTVLYGL 308
+ + +++ + A D LG + +
Sbjct: 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 4e-14
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 27/168 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + N I++NP+ + N + S SP ++LE + Y EA
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM----SKSPVDSSVLEGVKELYLEAAHQN 207
Query: 203 PTLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
+ D + G A + + A+ + N G
Sbjct: 208 GDMIDPDLQTGLGVLFHLS----GEFNRAID-------AFNAALTVRPEDYSLWNRLGAT 256
Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L R ++ A+ + A+++Q F R+ YNLG L
Sbjct: 257 LANGD-----RSEE-----AVEAYTRALEIQPGFIRSRYNLGISCINL 294
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 37/205 (18%)
Query: 143 AAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200
+ Y A +N + D D ++ S + A ++ A
Sbjct: 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--------------FNRAIDAFNAALT 241
Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
+ P + + +++ R++EA E Y +A+++ ++ N G++
Sbjct: 242 VRPEDYSLWNRLGATLANG----DRSEEAVE-------AYTRALEIQPGFIRSRYNLGIS 290
Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320
L A R A+S F A+ LQ + G LR ++
Sbjct: 291 CINLGAY----------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340
Query: 321 PREVSPNELYSQSAIYIAAAHALKP 345
+ + A L P
Sbjct: 341 DQPELFQAANLGDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 20/166 (12%), Positives = 40/166 (24%), Gaps = 27/166 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + E + A S + + + + + K Y T
Sbjct: 8 AKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQN------QVTVSASEKGYYFHTENP 61
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+ + G E A+ + +A G+
Sbjct: 62 FKDWPGAFEEGLKRLKE----GDLPVTILF-------MEAAILQDPGDAEAWQFLGITQA 110
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
E E+ AI + ++LQ + +A+ L
Sbjct: 111 ENE-----NEQA-----AIVALQRCLELQPNNLKALMALAVSYTNT 146
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 9e-15
Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 33/166 (19%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A A+E +P DA A+V Q + + A ++Y +A
Sbjct: 56 AKVPLRKALEIDPSSADAHAALAVVFQTEME--------------PKLADEEYRKALASD 101
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
N+ + + + R +EA + +A+++ L + N GL
Sbjct: 102 SRNARVLNNYGGFLYE----QKRYEEAYQRLLEASQD-----TLYPERSRVFENLGLVSL 152
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
++ + A F +++L + + +LY
Sbjct: 153 QMKKP----AQ------AKEYFEKSLRLNRNQPSVALEMADLLYKE 188
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 8e-14
Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 37/168 (22%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ + E DA L + + E+A +A +
Sbjct: 22 GDQNPLKTDKGRDEARDAYIQLGLGYLQRGN--------------TEQAKVPLRKALEID 67
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P+ DA A+ K A+E Y KA+ + + + LNN+G L
Sbjct: 68 PSSADAHAALAVVFQT----EMEPKLADE-------EYRKALASDSRNARVLNNYGGFLY 116
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLYGL 308
E R ++ A + A Q + R NLG V +
Sbjct: 117 EQK-----RYEE-----AYQRLLEASQDTLYPERSRVFENLGLVSLQM 154
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 37/168 (22%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-- 200
A + Y A+ + + L N+ L E EEA ++ EA++
Sbjct: 90 ADEEYRKALASDSRNARVLNNYGGFLYEQKR--------------YEEAYQRLLEASQDT 135
Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
L P F N + + + +A+E +EK+++LN N P
Sbjct: 136 LYPERSRVFENLGLV----SLQMKKPAQAKE-------YFEKSLRLNRNQPSVALEMADL 184
Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L + VPAR+ + Q R++ +
Sbjct: 185 LYKEREYVPARQ----------YYDLFAQGGGQNARSLLLGIRLAKVF 222
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 38/155 (24%)
Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
+ ++ LV + S + + + DA+
Sbjct: 2 GSSHHHHHHSSGLVPRGS-----------------HMGDQNPLKTDKGRDEARDAYIQLG 44
Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 273
+ R G T++A+ KA++++ +S A + Q
Sbjct: 45 LGYLQR----GNTEQAKV-------PLRKALEIDPSSADAHAALAVVFQTEMEP------ 87
Query: 274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ A ++R A+ R + N G LY
Sbjct: 88 ----KLADEEYRKALASDSRNARVLNNYGGFLYEQ 118
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 1e-14
Identities = 28/185 (15%), Positives = 52/185 (28%), Gaps = 40/185 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADN----------VSLDSTSPS----KDAL- 187
A +A+E+ E + + + S + D L
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116
Query: 188 ----LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243
E+ KK + + P + G+ + W A K Y +
Sbjct: 117 KLRNAEKELKKAEAEAYVNPEKAEEARL-----------EGKEYFTKSDWPNAVKAYTEM 165
Query: 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303
++ + +N AL +L + AI+ AI+ +F RA T
Sbjct: 166 IKRAPEDARGYSNRAAALAKLMSF----------PEAIADCNKAIEKDPNFVRAYIRKAT 215
Query: 304 VLYGL 308
+
Sbjct: 216 AQIAV 220
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 21/160 (13%), Positives = 37/160 (23%), Gaps = 35/160 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
K+ NPE + +D A K Y E +
Sbjct: 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--------------WPNAVKAYTEMIKRA 169
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + N R + +A + KA++ + N +A A
Sbjct: 170 PEDARGYSN-----------RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302
+ A+ AA + +
Sbjct: 219 AVKEY----AS------ALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-11
Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 25/124 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A K Y I+R PED N A L + EA ++A
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------------FPEAIADCNKAIEKD 203
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A+ + + A + + A + + A + + +
Sbjct: 204 PNFVRAYIR-----------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252
Query: 263 ELSA 266
A
Sbjct: 253 YYKA 256
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 23/121 (19%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
+EA + Y++A L N R + + ++ A AV+
Sbjct: 21 FDEAIEHYNKAWELHKD-ITYLNN-----------RAAAEYEKGEYETAISTLNDAVEQG 68
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
+ + + + I+ + + +L
Sbjct: 69 REMRADYKVISKSFARIGN----------AYHKLGDLKKTIEY-YQKSLTEHRTADILTK 117
Query: 308 L 308
L
Sbjct: 118 L 118
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 24/170 (14%), Positives = 38/170 (22%), Gaps = 35/170 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ A+ P+D+ A A D L
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGD--------------TTAGEMAVQRGLALH 53
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P +A + R EA L ++A P G AL+
Sbjct: 54 PGHPEAVARLGRVR----WTQQRHAEAAVL-------LQQASDAAPEHPGIALWLGHALE 102
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312
+ A + + A QL + L L +
Sbjct: 103 DAGQA----------EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 10/87 (11%), Positives = 16/87 (18%), Gaps = 17/87 (19%)
Query: 222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281
M AV+ A A +
Sbjct: 1 MTADGPRELLQ-------LRAAVRHRPQDFVAWLMLADAELGMGDT----------TAGE 43
Query: 282 SKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + L A+ LG V +
Sbjct: 44 MAVQRGLALHPGHPEAVARLGRVRWTQ 70
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 4e-14
Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ ++R+PE + + EA + + +++ +
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNK--------------ISEARRYFSKSSTMD 403
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A+ + E QA Y A +L + G+
Sbjct: 404 PQFGPAWIG-----------FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+L I A +++ L + LG V +
Sbjct: 453 QLGNI----------LLANEYLQSSYALFQYDPLLLNELGVVAFNK 488
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 18/168 (10%), Positives = 37/168 (22%), Gaps = 35/168 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A+ Y ++I + D L A L + + + +
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSR--------------FIDVLAITTKILEID 335
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P D + + G + + V + G+
Sbjct: 336 PYNLDVYPLHLAS----LHESGEKNKLYLI-------SNDLVDRHPEKAVTWLAVGIYYL 384
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310
++ I + A F + + F A E
Sbjct: 385 CVNKI----SE------ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-12
Identities = 16/162 (9%), Positives = 34/162 (20%), Gaps = 28/162 (17%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
Y A + + + + + A + + L
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGN--------------ILLANEYLQSSYALFQYDP 475
Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
+ A + + A ++ A +K N G A ++L
Sbjct: 476 LLLNELGVV----AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK- 530
Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
AI + L + + V
Sbjct: 531 ----MYDA-----AIDALNQGLLLSTNDANVHTAIALVYLHK 563
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 8e-12
Identities = 20/166 (12%), Positives = 42/166 (25%), Gaps = 28/166 (16%)
Query: 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 199
+ A + ++ D L +V +D ++ A + A
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--------------MQTAINHFQNAL 502
Query: 200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259
L WA ++ G +++ A + + L+ N L
Sbjct: 503 LLVKKTQSNEKPWAATWANL----GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558
Query: 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
AI+ ++ + + A L L
Sbjct: 559 VYLHKKIP----------GLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 40/289 (13%), Positives = 84/289 (29%), Gaps = 31/289 (10%)
Query: 46 QTEKQHPSTEQTEKQPPSTEQTLNPALRKDEGNRTFTMRELLTELKSEGEDSVTDASFSQ 105
QT+ + ST P + L+ L + + + +
Sbjct: 7 QTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTD 66
Query: 106 GNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILT--FAAKRYANAIERNPEDYDAL-- 161
G+ + QN ++ + + + +Q+ F ++ I NP D L
Sbjct: 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEK-VLDITGNPNDAFWLAQ 125
Query: 162 -------YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-------- 206
Y A L D + S A + A L +
Sbjct: 126 VYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKN 185
Query: 207 -DAFYNWAIAISDRAKM---RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+ I A M RG+ + +A + Y++A+ ++ +A + L
Sbjct: 186 ANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ----LV 241
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
+ E +++ + + F R++Y L ++
Sbjct: 242 SNHLLTADEEWDLVLKLN---YSTYSKEDAAFLRSLYMLKLNKTSHEDE 287
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 5e-14
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 24/169 (14%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSL-DSTSPSKDALLEEACKKYDEATRL 201
A + + + P + + S S D+L E + + A RL
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210
Query: 202 CPTLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259
PT D + + G +A + + A+ + N N G
Sbjct: 211 DPTSIDPDVQCGLGVLF----NLSGEYDKAVD-------CFTAALSVRPNDYLLWNKLGA 259
Query: 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L + + ++ A++ +R A++LQ + R+ YNLG L
Sbjct: 260 TLANGN-----QSEE-----AVAAYRRALELQPGYIRSRYNLGISCINL 298
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 8e-12
Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 38/175 (21%)
Query: 143 AAKRYANAIERNPEDYDA--LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200
+ + A+ +P D ++ S + ++A + A
Sbjct: 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--------------YDKAVDCFTAALS 245
Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
+ P + + +++ +++EA Y +A++L ++ N G++
Sbjct: 246 VRPNDYLLWNKLGATLANG----NQSEEAVA-------AYRRALELQPGYIRSRYNLGIS 294
Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315
L A R A+ F A+ +Q G + TLR
Sbjct: 295 CINLGAH----------REAVEHFLEALNMQRKSRGPRGEGG-AMSENIWSTLRL 338
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 32/177 (18%), Positives = 48/177 (27%), Gaps = 32/177 (18%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--- 203
+ A D D L+E A P + YD+ +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKR--DAEAHPWLSDYDDLTSATYDKGYQFEEENP 60
Query: 204 -TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
H + + G A L +E AVQ + +A G
Sbjct: 61 LRDHPQPFEEGLRRLQ----EGDLPNAVLL-------FEAAVQQDPKHMEAWQYLGTTQA 109
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLR 314
E +E AIS R ++L+ D A+ L A + LR
Sbjct: 110 ENE-----QELL-----AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 41/217 (18%)
Query: 143 AAKRYANA---IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL-------LEEAC 192
AKR A A + + A Y+ +E +N D P ++ L L A
Sbjct: 27 MAKRDAEAHPWLSDYDDLTSATYDKGYQFEE--ENPLRDHPQPFEEGLRRLQEGDLPNAV 84
Query: 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252
++ A + P +A+ G T+ E A + ++L ++
Sbjct: 85 LLFEAAVQQDPKHMEAWQY-----------LGTTQAENEQELLAISALRRCLELKPDNQT 133
Query: 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312
AL ++ S ++Q A R ++ + + G
Sbjct: 134 ALMALAVSFTNES-----LQRQ-----ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183
Query: 313 LRTGGTVNPREVSPNELYSQSAI--YIAAAHALKPSY 347
+ + E ++AA L P+
Sbjct: 184 SKRILGSLLSDSLFLE-----VKELFLAAV-RLDPTS 214
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 66.6 bits (164), Expect = 9e-14
Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 35/150 (23%)
Query: 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218
+A YN + D +EA + Y +A L P +A+YN A
Sbjct: 2 EAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYK 47
Query: 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278
+ G EA E Y+KA++L+ S +A N G A + ++
Sbjct: 48 Q----GDYDEAIE-------YYQKALELDPRSAEAWYNLGNAYYKQGDY----DE----- 87
Query: 279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
AI ++ A++L A YNLG Y
Sbjct: 88 -AIEYYQKALELDPRSAEAWYNLGNAYYKQ 116
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 58.9 bits (144), Expect = 4e-11
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 25/122 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E +P +A YN + D +EA + Y +A L
Sbjct: 20 AIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 65
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P +A+YN A +G EA E Y+KA++L+ S +A N G A
Sbjct: 66 PRSAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPRSAEAWYNLGNAYY 114
Query: 263 EL 264
+
Sbjct: 115 KQ 116
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 47.0 bits (113), Expect = 8e-07
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E +P +A YN + D +EA + Y +A L
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 99
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250
P +A+YN A +G EA E Y+KA++L+ S
Sbjct: 100 PRSAEAWYNLGNAYYK----QGDYDEAIE-------YYQKALELDPRS 136
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 28/170 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A I + A +L + L+EA + + +
Sbjct: 56 ALPDLTKVIALKMDFTAARLQRGHLLLKQGK--------------LDEAEDDFKKVLKSN 101
Query: 203 PTLHDAFYNWAIAI----SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258
P+ + + + R + + + A +K +++ +
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161
Query: 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + R AIS +AA +L+ D A Y + T+ Y L
Sbjct: 162 ECFIKE--------GE--PRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 5e-13
Identities = 18/171 (10%), Positives = 42/171 (24%), Gaps = 30/171 (17%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A ++ A++ +P++Y A Y A V + A + L
Sbjct: 22 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGK--------------SKAALPDLTKVIALK 67
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
A RG + +A +++K ++ N + + ++
Sbjct: 68 MDFTAARLQ-----------RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116
Query: 263 ELSAIV-----PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
AI+ +++
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE 167
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 7e-13
Identities = 17/167 (10%), Positives = 44/167 (26%), Gaps = 29/167 (17%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
A + ++ +A Y + + + D E + + E +L
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGD--------------HELSLSEVRECLKLDQDHK 222
Query: 207 DAFYNWAIAIS-DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ----ALNNWGLAL 261
F ++ ++ + + AT YE ++ + + +
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282
Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ AI +Q++ D A+ +
Sbjct: 283 SKDEKP----------VEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 6e-12
Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 22/163 (13%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA-LLEEACKKYDEATRL 201
A + ++ NP + + + +++ + D A D+ +
Sbjct: 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149
Query: 202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
C + R E ++A + + A +L ++ +A
Sbjct: 150 CVWDAELREL-----------RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198
Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304
+L E ++S+ R ++L D R + V
Sbjct: 199 YQLGDH----EL------SLSEVRECLKLDQDHKRCFAHYKQV 231
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 31/172 (18%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A +E D + A + + +A A++L
Sbjct: 139 AITFLDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLK 184
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+AFY + + + ++L+ + + ++ +
Sbjct: 185 SDNTEAFYK-----------ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233
Query: 263 ELSAIVPARE--KQTIVRTAISKFRAAIQLQFDF----HRAIYNLGTVLYGL 308
I A E + A SK+ + ++ + R+ +
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 8e-10
Identities = 18/170 (10%), Positives = 50/170 (29%), Gaps = 27/170 (15%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ ++ + + ++ V + + S + +A KY+ +
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVMKTE 264
Query: 203 PTLHD----AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258
P++ + + +E +A + + +Q+ ++ AL +
Sbjct: 265 PSVAEYTVRSKER-----------ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313
Query: 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
A ++ AI + AA + + + L L
Sbjct: 314 EAYLIEEMY----DE------AIQDYEAAQEHNENDQQIREGLEKAQRLL 353
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-08
Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 35/149 (23%)
Query: 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216
D + L + L +A ++ A P + A+Y
Sbjct: 2 DVEKHLELGKKLLAAGQ--------------LADALSQFHAAVDGDPDNYIAYYR----- 42
Query: 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276
R A K A + K + L + A G L + + ++
Sbjct: 43 ------RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL----DE--- 89
Query: 277 VRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
A F+ ++ ++
Sbjct: 90 ---AEDDFKKVLKSNPSEQEEKEAESQLV 115
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 15/106 (14%)
Query: 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280
G+ A A + AV + ++ A + + A
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS----------KAA 56
Query: 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGL-----AEDTLRTGGTVNP 321
+ I L+ DF A G +L AED + NP
Sbjct: 57 LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 29/177 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ + + P + +A +L + D + A K+YD A RL
Sbjct: 363 SEAFFNETKLKFPTLPEVPTFFAEILTDRGD--------------FDTAIKQYDIAKRLE 408
Query: 203 PTLHDAFYNWAIAIS-----DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257
I R + T+ EE + A K KA +L+ S QA
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314
++ I ++ AI F + L + + LR
Sbjct: 469 AQLKLQMEKI----DE------AIELFEDSAILARTMDEKLQATTFAEAAKIQKRLR 515
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 36/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A +I +P ++ AL L + + +E K + +A L
Sbjct: 262 AQVLLQESINLHP-TPNSYIFLALTLADKEN--------------SQEFFKFFQKAVDLN 306
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P +Y+ RG+ + +K A ++++KA LN + L
Sbjct: 307 PEYPPTYYH-----------RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + + + F +L
Sbjct: 356 KQGKF----TE------SEAFFNETKLKFPTLPEVPTFFAEILTDR 391
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 29/122 (23%)
Query: 147 YANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A +P L N + + EA K Y A L
Sbjct: 10 IAQLKGLSPSQRQAYAVQLKNRGNHFFTAKN--------------FNEAIKYYQYAIELD 55
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + N + ++ + KA+++ + +AL A +
Sbjct: 56 PNEPVFYSN-----------ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104
Query: 263 EL 264
L
Sbjct: 105 SL 106
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 24/142 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL--LEEACKKYDEATR 200
A K+Y A ++ ++ S P++ A K +A
Sbjct: 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456
Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK------------------NYEK 242
L P A A + EA EL++ + +K
Sbjct: 457 LDPRSEQAKIGLAQLKLQM----EKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQK 512
Query: 243 AVQLNWNSPQALNNWGLALQEL 264
++ + + +
Sbjct: 513 RLRADPIISAKMELTLARYRAK 534
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 17/121 (14%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
+ L P+ A+ + EA + Y+ A++L+
Sbjct: 3 HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIK-------YYQYAIELD 55
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
N P +N + EK I A++++ D +A+ +
Sbjct: 56 PNEPVFYSNISACYISTGDL----EK------VIEFTTKALEIKPDHSKALLRRASANES 105
Query: 308 L 308
L
Sbjct: 106 L 106
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-07
Identities = 19/166 (11%), Positives = 44/166 (26%), Gaps = 26/166 (15%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+K + P + + + L+ +S + + + A +A +
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSH------LEVSSVNTSSNYDTAYALLSDALQRL 203
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+ D Y A ++ +++ L N+ AL G+
Sbjct: 204 YSATDEGYLVA---------NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + A + +I L + L L
Sbjct: 255 LKNNL----------LDAQVLLQESINLHPT-PNSYIFLALTLADK 289
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 43/229 (18%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A K Y AIE +P + N + + D LE+ + +A +
Sbjct: 44 AIKYYQYAIELDPNEPVFYSNISACYISTGD--------------LEKVIEFTTKALEIK 89
Query: 203 PTLHDAFYNWAI----------AISD----------------RAKMRGRTKEAEELWKQA 236
P A A A+ D R K+A ++ +
Sbjct: 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149
Query: 237 -TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295
+K+ + Q+ ++ + +G+ L TA + A+Q +
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD--TAYALLSDALQRLYSAT 207
Query: 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344
Y + L + D + + N + E + + Y H LK
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-13
Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 30/174 (17%)
Query: 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 199
A + ++ A+ PED ++ +V ++ + + A K + +A
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--------------WKTAEKWFLDAL 220
Query: 200 RLCPTLHDAFY--NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257
+ + W +++ G + + +A + +A+ L + +
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNL----GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276
Query: 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
G + A+ F A+ L+ D ++ LG + D
Sbjct: 277 GYIHSLMGNF----------ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-12
Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 44/175 (25%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + + A A + ++ ++A Y A +L
Sbjct: 110 ARRYLSKATTLEKTYGPAWIAYGHSFAVESE--------------HDQAMAAYFTAAQLM 155
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
H G K A + + +A+ + P ++ G+
Sbjct: 156 KGCHLPMLY-----------IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQL---------QFDFHRAIYNLGTVLYGL 308
+ +TA F A++ + + NLG V L
Sbjct: 205 QNGEW----------KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 22/166 (13%), Positives = 42/166 (25%), Gaps = 34/166 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
K + +E++P L L E E + L
Sbjct: 41 CYKLTSVVMEKDPFHASCLPVHIGTLVELNK--------------ANELFYLSHKLVDLY 86
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P+ +++ + A + KA L A +G +
Sbjct: 87 PSNPVSWFAVGCYYLMVGH----------KNEHARRYLSKATTLEKTYGPAWIAYGHSFA 136
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
S ++ A++ + A QL H + +G
Sbjct: 137 VESEH----DQ------AMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-13
Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 34/192 (17%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQ---------ESADNV-SLDSTSP---------- 182
A ++ A++ +P++Y A Y A V V L
Sbjct: 45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104
Query: 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS----DRAKMRGRTKEAEELWKQATK 238
K L+EA + + + P+ ++ + I R + + + A
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164
Query: 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298
+K +++ + + R AIS +AA +L+ D A
Sbjct: 165 FLDKILEVCVWDAELRELRAECFIKEGEP----------RKAISDLKAASKLKNDNTEAF 214
Query: 299 YNLGTVLYGLAE 310
Y + T+ Y L +
Sbjct: 215 YKISTLYYQLGD 226
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 17/167 (10%), Positives = 44/167 (26%), Gaps = 29/167 (17%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
A + ++ +A Y + + + D E + + E +L
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGD--------------HELSLSEVRECLKLDQDHK 245
Query: 207 DAFYNWAIAIS-DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ----ALNNWGLAL 261
F ++ ++ + + AT YE ++ + + +
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305
Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ AI +Q++ D A+ +
Sbjct: 306 SKDEKP----------VEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 31/172 (18%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A +E D + A + + +A A++L
Sbjct: 162 AIAFLDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLK 207
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+AFY + + + ++L+ + + ++ +
Sbjct: 208 NDNTEAFYK-----------ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256
Query: 263 ELSAIVPARE--KQTIVRTAISKFRAAIQLQFDFH----RAIYNLGTVLYGL 308
I A E + A SK+ + ++ + R+ +
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 35/162 (21%)
Query: 144 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP 203
N ++ D + L + L +A ++ A P
Sbjct: 12 DLGTENLYFQSMADVEKHLELGKKLLAAGQ--------------LADALSQFHAAVDGDP 57
Query: 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263
+ A+Y R A K A + K +QL + A G L +
Sbjct: 58 DNYIAYYR-----------RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
Query: 264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ ++ A F+ ++ + ++
Sbjct: 107 QGKL----DE------AEDDFKKVLKSNPSENEEKEAQSQLI 138
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 20/163 (12%), Positives = 48/163 (29%), Gaps = 22/163 (13%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS-TSPSKDALLEEACKKYDEATRL 201
A + ++ NP + + + +++ + A D+ +
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261
C + R E ++A + + A +L ++ +A
Sbjct: 173 CVWDAELREL-----------RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221
Query: 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304
+L E ++S+ R ++L D R + V
Sbjct: 222 YQLGDH----EL------SLSEVRECLKLDQDHKRCFAHYKQV 254
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 17/166 (10%), Positives = 49/166 (29%), Gaps = 19/166 (11%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ ++ + + ++ V + + S + +A KY+ +
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVMKTE 287
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P++ + + +E +A + + +Q+ ++ AL + A
Sbjct: 288 PSIAEY---TVRSKE----RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
++ AI + A + + + L L
Sbjct: 341 IEEMY----DE------AIQDYETAQEHNENDQQIREGLEKAQRLL 376
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 37/172 (21%)
Query: 143 AAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198
A +Y + ++ P + + EA + E
Sbjct: 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK--------------PVEAIRVCSEV 321
Query: 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258
++ P +A + R EE++ +A ++YE A + N N Q
Sbjct: 322 LQMEPDNVNALKD-----------RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370
Query: 259 LALQELSAIVPAR-------EKQTIVRTAISKFR-AAIQLQFDFHRAIYNLG 302
A + L ++ + I +R A+Q D +
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 422
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-07
Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 27/156 (17%)
Query: 206 HDAFYNWAIAISDRAKMRGRTKEAEEL------------WKQATKNYEKAVQLNWNSPQA 253
H ++ + + + E+ A + AV + ++ A
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA 62
Query: 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL----- 308
+ + A+ IQL+ DF A G +L
Sbjct: 63 YYRRATVFLAMGKS----------KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112
Query: 309 AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344
AED + NP E E SQ
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 4e-13
Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 35/163 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E PE A N A VLQ+ L+EA Y EA R+
Sbjct: 28 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------------LQEALMHYKEAIRIS 73
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT DA+ N + + + A + Y +A+Q+N A +N +
Sbjct: 74 PTFADAYSNMGNTLKEMQD-----------VQGALQCYTRAIQINPAFADAHSNLASIHK 122
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ I AI+ +R A++L+ DF A NL L
Sbjct: 123 DSGNI----------PEAIASYRTALKLKPDFPDAYCNLAHCL 155
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 5e-12
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 40/173 (23%)
Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
P D+L N A + +E + +EEA + Y +A + P A N A
Sbjct: 5 CPTHADSLNNLANIKREQGN--------------IEEAVRLYRKALEVFPEFAAAHSNLA 50
Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 273
+ +G+ +EA +Y++A++++ A +N G L+E+ +
Sbjct: 51 SVLQQ----QGKLQEALM-------HYKEAIRISPTFADAYSNMGNTLKEMQDV------ 93
Query: 274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL-----YGLAEDTLRTGGTVNP 321
+ A+ + AIQ+ F A NL ++ A + RT + P
Sbjct: 94 ----QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 7e-10
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 29/161 (18%)
Query: 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260
CPT D+ N A + +G +EA L Y KA+++ A +N
Sbjct: 4 SCPTHADSLNNLANI----KREQGNIEEAVRL-------YRKALEVFPEFAAAHSNLASV 52
Query: 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL-----YGLAEDTLRT 315
LQ+ + + A+ ++ AI++ F A N+G L A
Sbjct: 53 LQQQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102
Query: 316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356
+NP + +S A + + + + Y +AL+L
Sbjct: 103 AIQINPAFA---DAHSNLASIHKDSGNIPEAIASYRTALKL 140
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 2e-09
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 25/122 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y AI +P DA N L+E D ++ A + Y A ++
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD--------------VQGALQCYTRAIQIN 107
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P DA N A K G EA +Y A++L + P A N LQ
Sbjct: 108 PAFADAHSNLASIH----KDSGNIPEAIA-------SYRTALKLKPDFPDAYCNLAHCLQ 156
Query: 263 EL 264
+
Sbjct: 157 IV 158
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 6e-06
Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 31/163 (19%)
Query: 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQES 171
+ A N + E + A + Y AI+ NP DA N A + ++S
Sbjct: 70 IRISPTFADAYSNMGNTLKEMQD-----VQGALQCYTRAIQINPAFADAHSNLASIHKDS 124
Query: 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231
+ + EA Y A +L P DA+ N A +
Sbjct: 125 GN--------------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD---------- 160
Query: 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 274
W + +K V + + + N S + P
Sbjct: 161 -WTDYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGF 201
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 7e-13
Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 51/192 (26%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A ++ A+ P+ + + L ++ + + A + +D L
Sbjct: 62 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELD 107
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT + A N IA+ GR K A++ + Q + N P LA Q
Sbjct: 108 PTYNYAHLNRGIALYYG----GRDKLAQD-------DLLAFYQDDPNDPFRSLWLYLAEQ 156
Query: 263 ELS---AIVPARE-----------------------KQTIVRTAISKFRAAIQLQFDFHR 296
+L A ++ +QT++ + L
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216
Query: 297 AIYNLGTVLYGL 308
+ LG L
Sbjct: 217 TNFYLGKYYLSL 228
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 24/165 (14%), Positives = 43/165 (26%), Gaps = 35/165 (21%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
A+ + E LY ++ A + +A + P +
Sbjct: 32 LASRALTDDERAQLLYERGVLYDSLGL--------------RALARNDFSQALAIRPDMP 77
Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
+ F I ++ G A E ++ ++L+ A N G+AL
Sbjct: 78 EVFNYLGIYLTQA----GNFDAAYE-------AFDSVLELDPTYNYAHLNRGIALYYGGR 126
Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
+ A A Q + L L E
Sbjct: 127 D----------KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 161
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 25/125 (20%)
Query: 188 LEEACKKYDEA----TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243
E + ++ Y RG ++ L A ++ +A
Sbjct: 21 QEVILARMEQILASRALTDDERAQLLYE-----------RGVLYDSLGLRALARNDFSQA 69
Query: 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303
+ + + P+ N G+ L + + A F + ++L ++ A N G
Sbjct: 70 LAIRPDMPEVFNYLGIYLTQAGNF----DA------AYEAFDSVLELDPTYNYAHLNRGI 119
Query: 304 VLYGL 308
LY
Sbjct: 120 ALYYG 124
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 20/169 (11%), Positives = 40/169 (23%), Gaps = 33/169 (19%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + +P D L Q+ LD ++A + +
Sbjct: 130 AQDDLLAFYQDDPNDPFRSLWLYLAEQK------LD---------EKQAKEVLKQHFEKS 174
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+ G E + L ++ + L + + G
Sbjct: 175 DKEQWGWNIVEFY-------LGNISE-QTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
L + +A + F+ A+ L L +D
Sbjct: 227 SLGDL----------DSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 13/86 (15%)
Query: 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282
+ + +Q + Q L G+ L A +
Sbjct: 18 TLQQEVILARMEQI---LASRALTDDERAQLLYERGVLYDSLGLR----------ALARN 64
Query: 283 KFRAAIQLQFDFHRAIYNLGTVLYGL 308
F A+ ++ D LG L
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQA 90
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 8e-12
Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 28/171 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL-----LEEACKKYDE 197
A + I N + + Y + + +S + A ++A Y E
Sbjct: 23 AVSYFRQTIALNIDRTEMYYWTNV---DKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79
Query: 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257
+ P D A RG+ K+A YEK +QL ++ A
Sbjct: 80 LLQKAPNNVDCLEACAEM----QVCRGQEKDALR-------MYEKILQLEADNLAANIFL 128
Query: 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
G + +EK+ + + A Y G
Sbjct: 129 GNYYYLTA----EQEKK-----KLETDYKKLSSPTKMQYARYRDGLSKLFT 170
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 35/168 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y +++ P + D L A + ++A + Y++ +L
Sbjct: 73 AYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--------------EKDALRMYEKILQLE 118
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
A A E K+ + K + A GL+
Sbjct: 119 ADNLAANIFLGNYYYLTA----------EQEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310
+ EK A + + I A L +L E
Sbjct: 169 FTTRY----EK------ARNSLQKVILRFPS-TEAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-10
Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 29/161 (18%)
Query: 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215
+ D + E+ +A + + L + +Y +
Sbjct: 2 QSVDEMLQKVSAAIEAGQ--------------NGQAVSYFRQTIALNIDRTEMYYWTNVD 47
Query: 216 ISDRAKMR-----GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270
+ + + + +A Y++ +Q N+ L
Sbjct: 48 KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE--- 104
Query: 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
+ A+ + +QL+ D A LG Y AE
Sbjct: 105 -------KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 5e-11
Identities = 27/211 (12%), Positives = 59/211 (27%), Gaps = 42/211 (19%)
Query: 142 FAAKRYANAIER----NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197
K + A++ +N + + + EA K +
Sbjct: 17 ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKN--------------MTEAEKAFTR 62
Query: 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNN 256
+ L A++ RG E + A K+ ++A+ QL N
Sbjct: 63 SINRDKHLAVAYFQ-----------RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111
Query: 257 WGLALQELSAIV-----PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311
GL + + V K+ + A + A ++ + + + A +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID-------KAME 164
Query: 312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHA 342
+ P + L+ + +A
Sbjct: 165 CVWKQKLYEPVVIPVGRLFRPNERQVAQLAK 195
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 6e-11
Identities = 22/167 (13%), Positives = 45/167 (26%), Gaps = 38/167 (22%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
A + + + LY ++ ++A K + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGK--------------WDDAQKIFQALCMLDHYDA 52
Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
F G +++ L++QA ++Y ++ N P+ + +L
Sbjct: 53 RYFLG-----------LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG- 100
Query: 267 IVPAREKQTIVRTAISKFRAAIQLQF---DFHRAIYNLGTVLYGLAE 310
A S F +A L G +L +
Sbjct: 101 ----DLDG-----AESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-09
Identities = 24/172 (13%), Positives = 44/172 (25%), Gaps = 33/172 (19%)
Query: 104 SQGNTPHQLAEQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDAL 161
S G T L + +E + ++ G + + G+ A K + + D
Sbjct: 2 SDGGTLAMLRGLSEDTLEQLYAL-GFNQYQAGKWDD-----AQKIFQALCMLDHYDARYF 55
Query: 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK 221
Q E+A + Y + ++ A
Sbjct: 56 LGLGACRQSLGL--------------YEQALQSYSYGALMDINEPRFPFHAAECH----L 97
Query: 222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 273
G AE + A L P A L A+ +++
Sbjct: 98 QLGDLDGAES-------GFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 9e-11
Identities = 25/166 (15%), Positives = 42/166 (25%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A P+ A+ + Q ++ +A L
Sbjct: 245 LLPVLCQAHGLPPDQVVAIASNIGGKQALET--------------VQRLLPVLCQAHGLT 290
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + G K+A E ++ +A L + A+ + Q
Sbjct: 291 PDQVVAIAS-----------HGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 339
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L V+ + A L D AI + G L
Sbjct: 340 ALET----------VQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 3e-09
Identities = 22/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A A+ + Q ++ +A L
Sbjct: 584 LLPVLCQAHGLTQVQVVAIASNIGGKQALET--------------VQRLLPVLCQAHGLT 629
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + K+A E ++ +A L + A+ + G Q
Sbjct: 630 PAQVVAIAS-----------HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 678
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L V+ + A L + AI + L
Sbjct: 679 ALET----------VQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-08
Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 24/177 (13%)
Query: 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL--LEEAC 192
+++ A + A+E +AL L L A V++ S + K AL ++
Sbjct: 154 DTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLT-PAQVVAIASNNGGKQALETVQRLL 212
Query: 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252
+A L P A + K+A E ++ +A L +
Sbjct: 213 PVLCQAHGLTPAQVVAIAS-----------HDGGKQALETMQRLLPVLCQAHGLPPDQVV 261
Query: 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309
A+ + Q L V+ + A L D AI + G L
Sbjct: 262 AIASNIGGKQALET----------VQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE 308
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 3e-08
Identities = 23/166 (13%), Positives = 39/166 (23%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A P+ A+ + Q ++ +A L
Sbjct: 516 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 561
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + G K+A E ++ +A L A+ + Q
Sbjct: 562 PDQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQ 610
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
L V+ + A L AI + L
Sbjct: 611 AL----------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 6e-08
Identities = 22/167 (13%), Positives = 39/167 (23%), Gaps = 35/167 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A P+ A+ + Q ++ +A L
Sbjct: 652 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 697
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
A + K+A E ++ +A L + A+ + G Q
Sbjct: 698 QEQVVAIAS-----------NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 746
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309
L V+ + A L AI + L
Sbjct: 747 ALET----------VQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-07
Identities = 23/166 (13%), Positives = 42/166 (25%), Gaps = 36/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A P+ A+ + Q ++ +A L
Sbjct: 313 LLPVLCQAHGLTPDQVVAIASHDGGKQALET--------------VQRLLPVLCQAHGLT 358
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A + G K+A E ++ +A L + A+ + G
Sbjct: 359 PDQVVAIAS-----------NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG---- 403
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
++ V+ + A L D AI + L
Sbjct: 404 -------GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 442
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-07
Identities = 23/188 (12%), Positives = 42/188 (22%), Gaps = 46/188 (24%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A P+ A+ + Q ++ +A L
Sbjct: 347 LLPVLCQAHGLTPDQVVAIASNGGGKQALET--------------VQRLLPVLCQAHGLT 392
Query: 203 PTLHDAFYNW-----------AIAISDRA-----------KMRGRTKEAEELWKQATKNY 240
P A + + + +A K+A E ++
Sbjct: 393 PDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 452
Query: 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300
+ L A+ + Q L V+ + A L D AI +
Sbjct: 453 CQTHGLTPAQVVAIASHDGGKQALET----------VQQLLPVLCQAHGLTPDQVVAIAS 502
Query: 301 LGTVLYGL 308
L
Sbjct: 503 NIGGKQAL 510
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 26/112 (23%)
Query: 154 NPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212
+P + +A YN + D +EA + Y +A L P +A+YN
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNL 49
Query: 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264
A +G EA E Y+KA++L+ N+ +A N G A Q+
Sbjct: 50 GNAYYK----QGDYDEAIE-------YYQKALELDPNNAEAKQNLGNAKQKQ 90
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
+A+YN A + G EA E Y+KA++L+ N+ +A N G A +
Sbjct: 10 EAWYNLGNAYYKQ----GDYDEAIE-------YYQKALELDPNNAEAWYNLGNAYYKQGD 58
Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
++ AI ++ A++L + A NLG
Sbjct: 59 Y----DE------AIEYYQKALELDPNNAEAKQNLGNAKQKQ 90
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + Y A+E +P + +A YN + D +EA + Y +A L
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELD 73
Query: 203 PTLHDAFYNWAIAISD 218
P +A N A
Sbjct: 74 PNNAEAKQNLGNAKQK 89
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 1e-09
Identities = 16/144 (11%), Positives = 42/144 (29%), Gaps = 37/144 (25%)
Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
++ + Y ++ ++ + E+ +++A +L P +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGN--------------YTESIDLFEKAIQLDPEESKYWLMKG 47
Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSAIVPAR 271
A+ + R +EA + Y + + + AL+ + +
Sbjct: 48 KALYN----LERYEEAVD-------CYNYVINVIEDEYNKDVWAAKADALRYIE----GK 92
Query: 272 EKQTIVRTAISKFRAAIQLQFDFH 295
E A +L+ H
Sbjct: 93 EV------EAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 23/104 (22%)
Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
+ +Y + D G E+ + +EKA+QL+ + G AL L
Sbjct: 7 EEYYLEGVLQYDA----GNYTESID-------LFEKAIQLDPEESKYWLMKGKALYNLER 55
Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHR--AIYNLGTVLYGL 308
E+ A+ + I + D + L +
Sbjct: 56 Y----EE------AVDCYNYVINVIEDEYNKDVWAAKADALRYI 89
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 27/107 (25%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ + AI+ +PE+ L EEA Y+ +
Sbjct: 25 SIDLFEKAIQLDPEESKYWLMKGKALYNLER--------------YEEAVDCYNYVINVI 70
Query: 203 P--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
D + A A+ + E E +L
Sbjct: 71 EDEYNKDVWAAKADALRY----IEGKEVEAE-------IAEARAKLE 106
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-07
Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 25/122 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ + + D +Y++A +EEA +
Sbjct: 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------IEEAEVFFRFLCIYD 66
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
D + +E ++QA Y A L N + + G
Sbjct: 67 FYNVDYIMGL-----------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115
Query: 263 EL 264
L
Sbjct: 116 RL 117
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 9e-05
Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 30/150 (20%)
Query: 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254
+ + + D Y++A +GR +EAE + ++ + +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYD----FYNKGRIEEAEVF-------FRFLCIYDFYNVDYI 73
Query: 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-----A 309
Q + A + A L + + +++ G L A
Sbjct: 74 MGLAAIYQIKEQF----------QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123
Query: 310 EDTLRTGGTVNPREVSPNELYSQSAIYIAA 339
++ + E +L ++ Y+ A
Sbjct: 124 KECFELVIQHSNDE----KLKIKAQSYLDA 149
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-07
Identities = 14/132 (10%), Positives = 25/132 (18%), Gaps = 25/132 (18%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + + D Q + A Y +
Sbjct: 40 AHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--------------YDLAIHSYSYGAVMD 85
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
++ +A A +L N P+
Sbjct: 86 IXEPRFPFH-----------AAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134
Query: 263 ELSAIVPAREKQ 274
L AI +E +
Sbjct: 135 MLEAIKLKKEMK 146
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 14/122 (11%), Positives = 30/122 (24%), Gaps = 23/122 (18%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+R + + ++ + E + A A
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------------FDAALPHLRAALDFD 49
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT A+ + +G A + W+ A + Q + + L+
Sbjct: 50 PTYSVAWKWLGKTLQG----QGDRAGARQAWESGL-----AAAQSRGDQQVVKELQVFLR 100
Query: 263 EL 264
L
Sbjct: 101 RL 102
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 19/124 (15%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
++ ++ + + ++ + A + A+ +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEH----EQFDAALP-------HLRAALDFD 49
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
A G LQ AR+ + + A + + L L
Sbjct: 50 PTYSVAWKWLGKTLQGQGDRAGARQ---AWESGL-----AAAQSRGDQQVVKELQVFLRR 101
Query: 308 LAED 311
LA +
Sbjct: 102 LARE 105
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 5e-07
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 25/122 (20%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y AIE NP + N A + + A + + A +
Sbjct: 31 AVHFYGKAIELNPANAVYFCNRAAAYSKLGNY--------------AGAVQDCERAICID 76
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P A+ G + +A Y+KA++L+ ++ +N +A
Sbjct: 77 PAYSKAYGR-----------MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Query: 263 EL 264
+L
Sbjct: 126 KL 127
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 21/122 (17%)
Query: 189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248
E A Y +A L P F N R + A ++ E+A+ ++
Sbjct: 29 EAAVHFYGKAIELNPANAVYFCN-----------RAAAYSKLGNYAGAVQDCERAICIDP 77
Query: 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+A GLAL L+ A++ ++ A++L D NL L
Sbjct: 78 AYSKAYGRMGLALSSLNKH----------VEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Query: 309 AE 310
E
Sbjct: 128 RE 129
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-06
Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 27/116 (23%)
Query: 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213
+PED Y A + + A ++E P +Y+
Sbjct: 3 DPEDPFTRYALAQEHLKHDN--------------ASRALALFEELVETDPDYVGTYYHLG 48
Query: 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAI 267
RT +A + Y + +++ + + L+ A + +
Sbjct: 49 KLYER----LDRTDDAID-------TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-06
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ Y A++ E+ + A VL A + + D+A L
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQ-----------HMTAQTRAMIDKALALD 111
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236
A A A M+ +A ELW++
Sbjct: 112 SNEITALMLLASD----AFMQANYAQAIELWQKV 141
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 5e-05
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 22/122 (18%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ + I NP++ + D + Y +A +L
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQND--------------YSNSLLAYRQALQLR 74
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+ + A + +A + T + + +KA+ L+ N AL
Sbjct: 75 GENAELYAALATVLYYQAS-QHMTAQTRAM-------IDKALALDSNEITALMLLASDAF 126
Query: 263 EL 264
Sbjct: 127 MQ 128
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 18/125 (14%)
Query: 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241
+ E + + R P + + + G + + + Y
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWA-----------LLGEYYLWQNDYSNSLLAYR 68
Query: 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301
+A+QL + + L + Q + + A+ L + A+ L
Sbjct: 69 QALQLRGENAELYAALATVLYYQA-------SQHMTAQTRAMIDKALALDSNEITALMLL 121
Query: 302 GTVLY 306
+ +
Sbjct: 122 ASDAF 126
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-06
Identities = 15/159 (9%), Positives = 45/159 (28%), Gaps = 29/159 (18%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
IE P++Y ++ ++++ D + + + +
Sbjct: 155 ITAIIEEQPKNYQVWHHRRVLVEWLRD--------------PSQELEFIADILNQDAKNY 200
Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
A+ + R + +LW + ++ ++ + + N +
Sbjct: 201 HAWQH-----------RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT-- 247
Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ ++ + I+L A L +L
Sbjct: 248 --TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 4e-05
Identities = 22/197 (11%), Positives = 48/197 (24%), Gaps = 43/197 (21%)
Query: 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206
+AIE N +Y + ++L+ L E P +
Sbjct: 120 TRDAIELNAANYTVWHFRRVLLKS-------------LQKDLHEEMNYITAIIEEQPKNY 166
Query: 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266
+++ R E Q + + + + A + +QE
Sbjct: 167 QVWHH-----------RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK- 214
Query: 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326
+ + ++ + V+ N R V
Sbjct: 215 ---------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT--------TGYNDRAVLE 257
Query: 327 NEL-YSQSAIYIAAAHA 342
E+ Y+ I + +
Sbjct: 258 REVQYTLEMIKLVPHNE 274
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 9e-06
Identities = 47/330 (14%), Positives = 84/330 (25%), Gaps = 105/330 (31%)
Query: 68 LNPALRK----DEGNRTFTMRELLTELKSEGEDSVTDASFSQ--GNTPHQLAEQNNAAME 121
L+ A D + T T E+ L + P L +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVK-SL------------LLKYLDCRPQDLPREVLTTNP 327
Query: 122 LINSVTG-VDEEGRSR-QRILTFAAKRYANAIER-----NPEDYDALYNWAL-VLQESAD 173
S+ +G + + IE P +Y ++ L V SA
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSA- 385
Query: 174 NVS--------LDSTSPSKDALLEEACKK------YDEATRLCPTLHDAFYNWAIAISDR 219
++ D ++ + K E+T ++ I + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---SIPS------IYLELK 436
Query: 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE------------LSAI 267
K+ L + +Y N P+ ++ L L I
Sbjct: 437 VKLENEY----ALHRSIVDHY--------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRA-IYNLGTVLYGLAE--DTLRTGGTVNPREV 324
++ FR + L F F I + T +TL+
Sbjct: 485 EHPER--------MTLFR-MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ--------- 526
Query: 325 SPNELYSQSAIYIAAAHALKPSYSVYSSAL 354
+ Y YI P Y +A+
Sbjct: 527 --LKFYKP---YICDND---PKYERLVNAI 548
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 36/145 (24%)
Query: 152 ERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210
NP ++ L + + A+ L EA ++ + P +A+
Sbjct: 10 ANNPYMYHENPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWR 55
Query: 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270
+ G T+ E A A L+ ++
Sbjct: 56 S-----------LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN---- 100
Query: 271 REKQTIVRTAISKFRAAIQLQFDFH 295
A++ RA + Q +
Sbjct: 101 ------ANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-05
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 25/105 (23%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
AA + ++ PE +A + L E+ A + A L
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLD 81
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
P A++ ++ E A + +
Sbjct: 82 PKDIAVHAALAVSHTN-----------EHNANAALASLRAWLLSQ 115
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-05
Identities = 13/90 (14%), Positives = 21/90 (23%), Gaps = 10/90 (11%)
Query: 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276
+ G + +A +E Q +A + GL E ++
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE-----KDGL-- 69
Query: 277 VRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306
AI A L L
Sbjct: 70 ---AIIALNHARMLDPKDIAVHAALAVSHT 96
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-05
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 20/88 (22%)
Query: 224 GRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTA 280
G +A YEKA+ + G + L ++ A
Sbjct: 4 GLEAQAVPY-------YEKAIASGLQGKDLAECYLGLGSTFRTL-----GEYRK-----A 46
Query: 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ ++ + VLY L
Sbjct: 47 EAVLANGVKQFPNHQALRVFYAMVLYNL 74
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 6e-04
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 20/112 (17%)
Query: 188 LEEACKKYDEATRLC---PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244
+A Y++A L + + G ++AE + V
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL----GEYRKAEAV-------LANGV 54
Query: 245 QLNWNSPQALNNWGLALQELSAIVPARE--KQTIVRT----AISKFRAAIQL 290
+ N + + L L E + I T I ++ AI
Sbjct: 55 KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 19/114 (16%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y AIE +P + N A V E E + ++A +
Sbjct: 27 AHVHYDKAIELDPSNITFYNNKAAVYFEEKK--------------FAECVQFCEKAVEVG 72
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256
+ A A+S G + + A + + +++ P+ +
Sbjct: 73 RETRADYKLIAKAMS----RAGNAFQKQNDLSLAVQWFHRSLSEF-RDPELVKK 121
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 19/122 (15%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A K Y A E +P + + N A V E D + + ++A +
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------------YNKCRELCEKAIEVG 68
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
+ + A A + G + EE +K A Y K++ + +P L A +
Sbjct: 69 RENREDYRQIAKAYA----RIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQAEK 123
Query: 263 EL 264
L
Sbjct: 124 IL 125
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 4e-04
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
+E A + +E + P D Y G W++A NY+ A++LN
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYL----------MGNAYRKLGDWQKALNNYQSAIELN 65
Query: 248 WNSPQALNNWGL 259
+SP +
Sbjct: 66 PDSPALQARKMV 77
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.9 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.87 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.86 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.85 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.85 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.83 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.83 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.81 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.81 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.81 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.8 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.8 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.8 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.79 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.78 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.78 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.77 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.77 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.77 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.76 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.76 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.75 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.74 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.73 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.73 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.73 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.72 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.71 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.7 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.69 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.68 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.68 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.67 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.66 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.66 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.66 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.66 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.66 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.65 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.65 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.65 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.65 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.64 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.64 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.63 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.62 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.6 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.6 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.6 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.58 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.58 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.57 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.57 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.56 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.54 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.53 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.52 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.52 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.48 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.48 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.44 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.4 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.34 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.32 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.31 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.31 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.3 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.24 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.19 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.18 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.15 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.09 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.05 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.97 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.9 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.85 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.81 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.78 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.74 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.74 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.72 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.68 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.66 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.11 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.1 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.71 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.61 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.55 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.49 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.35 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.34 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.34 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.32 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.13 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.75 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.33 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.28 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.86 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.45 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.3 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.25 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.24 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.86 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.39 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.32 | |
| 2w2u_A | 83 | Hypothetical P60 katanin; hydrolase transport comp | 93.68 | |
| 2v6y_A | 83 | AAA family ATPase, P60 katanin; MIT, VPS4, archaea | 93.17 | |
| 1wfd_A | 93 | Hypothetical protein 1500032H18; MIT domain, struc | 93.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.76 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.3 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.79 | |
| 4a5x_A | 86 | MITD1, MIT domain-containing protein 1; protein tr | 91.21 | |
| 2v6x_A | 85 | Vacuolar protein sorting-associated protein 4; pro | 90.45 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.94 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.81 | |
| 2cpt_A | 117 | SKD1 protein, vacuolar sorting protein 4B; MIT, he | 89.72 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.4 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 88.38 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.3 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 88.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.7 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 85.61 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.06 | |
| 2dl1_A | 116 | Spartin; SPG20, MIT, structural genomics, NPPSFA, | 83.89 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.11 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 81.75 |
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=199.37 Aligned_cols=186 Identities=12% Similarity=0.133 Sum_probs=166.5
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
|.++.+++.+|.++. ..|++++|+..|++++..+|. .+...|++++|+.+|+++++++|+++.+++++|
T Consensus 2 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLY-ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 678899999999995 999999999999999999987 356679999999999999999999999999999
Q ss_pred HHHHHh-----------cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 166 LVLQES-----------ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 166 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
.++..+ |+ +++|+..|+++++++|+++.+++++|.++.. .|++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~---- 138 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGY--------------LEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAE---- 138 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHH--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred HHHHHhhhhhhhhcccccC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHH----
Confidence 999999 88 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
..|+++++++ +++.+++++|.+|..+|++ ++|+..|+++++++|+++.++.++|.++...|+..++
T Consensus 139 ---~~~~~al~~~-~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 139 ---ASLKQALALE-DTPEIRSALAELYLSMGRL----------DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp ---HHHHHHHHHC-CCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHhcc-cchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 7899999999 9999999999999999996 9999999999999999999999999999999988766
Q ss_pred hcCc
Q 017806 315 TGGT 318 (365)
Q Consensus 315 ~~~~ 318 (365)
...+
T Consensus 205 ~~~~ 208 (217)
T 2pl2_A 205 ARAA 208 (217)
T ss_dssp ----
T ss_pred HHHH
Confidence 6543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=215.68 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=168.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhh-HHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRI-LTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~-~~~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|++..+++.+|.++ ...|++++|+..|++++.++|. .+...|+ +++|+.+|+++++++|++..+
T Consensus 90 i~~~p~~~~a~~~lg~~~-~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVL-QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCChhhHHHHHHHHHHH-HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 467888999999999999 5999999999999999999987 3445585 999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|+++|.++..+|+ +++|+.+|+++++++|++..+|+++|.++.. +|++++|+ .+|
T Consensus 169 ~~~~g~~~~~~g~--------------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl-------~~~ 223 (382)
T 2h6f_A 169 WHHRRVLVEWLRD--------------PSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNEL-------QYV 223 (382)
T ss_dssp HHHHHHHHHHHTC--------------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHH
T ss_pred HHHHHHHHHHccC--------------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHH-------HHH
Confidence 9999999999999 9999999999999999999999999999999 99999999 889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+++++++|++..+|+++|.++.. .|..+.|. ++.++.+|++++.++|++..+|+++|.++...|
T Consensus 224 ~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~-----~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 224 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV-----LEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH-----HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 99999999999999999999999 55541111 223369999999999999999999999999887
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=176.26 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=144.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+.+|+++++++|+++.++..+|.++..+|+ +++|+..+++++...|++..++..+|.
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--------------PNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 455678888888888999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .++++.|+ ..+.+++.++|++..++..+|.+|..+|++ ++|+..|+++++++|++
T Consensus 82 ~~~~----~~~~~~a~-------~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 82 ANFM----IDEKQAAI-------DALQRAIALNTVYADAYYKLGLVYDSMGEH----------DKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTC
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCccchHHHHHHHHHHHHhCCc----------hhHHHHHHHHHHhcchh
Confidence 9999 99999999 778888999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHH
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
+.+++++|.++..+|+. ..|..+|.++.+++|.+..|.
T Consensus 141 ~~~~~~lg~~~~~~g~~-------------------~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLR-------------------DEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp HHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHTTHHHHHHC
T ss_pred hhHHHHHHHHHHHCCCH-------------------HHHHHHHHHHHhCCccCHHHH
Confidence 99999999999999865 456667788888888776553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=199.77 Aligned_cols=233 Identities=18% Similarity=0.164 Sum_probs=144.0
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
..+|+++.+++.+|.++ ...|++++|+..|++++..+|. .+...|++++|+.+|+++++.+|++..+|.
T Consensus 95 ~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (388)
T 1w3b_A 95 RLKPDFIDGYINLAAAL-VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173 (388)
T ss_dssp HHCTTCHHHHHHHHHHH-HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44555566666666666 3666666666666666655554 122235555555555555555555555555
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-------- 234 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~-------- 234 (365)
++|.++...|+ +++|+..|+++++++|++..++.++|.++.. .|++++|+..|+
T Consensus 174 ~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 174 NLGCVFNAQGE--------------IWLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcC
Confidence 55555555555 5555555555555555555555555555544 555554442211
Q ss_pred -------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 235 -------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 235 -------------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
.|+..|+++++++|+++.+|+++|.++...|++ ++|+.+|+++++++|+++
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV----------AEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH----------HHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcccH
Confidence 122667777777777777777777777777775 889999999999889888
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch--H-------------HHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE--L-------------YSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 296 ~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~--~-------------~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
.++.++|.++...|+..++...+..++...|.. . +..+..+|.++..++|++......+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 888999999988888888877766666665542 1 3445555556666666554444333
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=199.12 Aligned_cols=191 Identities=23% Similarity=0.198 Sum_probs=138.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.++.+++.+|.++ ...|++++|+..|++++..+|. ++...|++++|+..|+++++.+|++..++
T Consensus 60 ~~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVY-KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHH
T ss_pred HhcCCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 456777888888888888 4888888888888888877765 24455788888888888888888888888
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++..+|+ +++|+.+|+++++++|++..+|+++|.++.. .|++++|+ ..|+
T Consensus 139 ~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~ 193 (388)
T 1w3b_A 139 SDLGNLLKALGR--------------LEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAI-------HHFE 193 (388)
T ss_dssp HHHHHHHHTTSC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHH-------HHHH
T ss_pred HHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 888888888888 9999999999999999999999999999988 99999988 5566
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
++++++|++..++.++|.++...|++ ++|+..|++++.++|+++.++.++|.++...|+..++...+
T Consensus 194 ~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 194 KAVTLDPNFLDAYINLGNVLKEARIF----------DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCT----------THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666666665 44444444444444444444444444444444444444433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=199.16 Aligned_cols=205 Identities=17% Similarity=0.170 Sum_probs=161.3
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
+...++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|+++++++|++..++..+|.+
T Consensus 64 ~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRL-KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445666677663 677777777777777766654 23445677777777777777777777777777777
Q ss_pred HHHhcCcccc--------------------C----------CCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 017806 168 LQESADNVSL--------------------D----------STSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIA 215 (365)
Q Consensus 168 ~~~~~~~~~a--------------------~----------~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 215 (365)
+...|++.+| . +......|++++|+.+|++++.++|+ ++.+++++|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 7776665544 1 34555567799999999999999999 89999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+.. .|++++|+ ..|+++++.+|+++.+|+++|.++...|++ ++|+..|+++++++|+++
T Consensus 223 ~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 223 FHL----SGEFNRAI-------DAFNAALTVRPEDYSLWNRLGATLANGDRS----------EEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCH
T ss_pred HHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCch
Confidence 999 99999999 779999999999999999999999999996 999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCcCCCCCC
Q 017806 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREV 324 (365)
Q Consensus 296 ~~~~~lg~~~~~~g~~~~a~~~~~~~~~~ 324 (365)
.++.++|.++..+|+..++...+..++..
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999887776655444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-24 Score=197.61 Aligned_cols=222 Identities=11% Similarity=0.024 Sum_probs=194.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhc-HHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQ-NNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~-~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|++..+|+.+|.++ ...|+ +++|+.+|++++.++|. .+...|++++|+.+|+++|+++|++..+
T Consensus 124 l~l~P~~~~a~~~~g~~l-~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a 202 (382)
T 2h6f_A 124 IELNAANYTVWHFRRVLL-KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202 (382)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH
T ss_pred HHhCccCHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHH
Confidence 688999999999999999 59997 99999999999999987 3455699999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT-KEAEELWKQATKN 239 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~-~~A~~~~~~A~~~ 239 (365)
|+++|.++..+|+ +++|+.+|+++|+++|++..+|+++|.++.. ++.+ ++|+ ++.++.+
T Consensus 203 ~~~lg~~~~~~g~--------------~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~----l~~~~~eA~--~~~el~~ 262 (382)
T 2h6f_A 203 WQHRQWVIQEFKL--------------WDNELQYVDQLLKEDVRNNSVWNQRYFVISN----TTGYNDRAV--LEREVQY 262 (382)
T ss_dssp HHHHHHHHHHHTC--------------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCSCSHHH--HHHHHHH
T ss_pred HHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCcchHHH--HHHHHHH
Confidence 9999999999999 9999999999999999999999999999988 7666 7775 4455588
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhc--CcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELS--AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
|++++.++|++..+|+++|.++...| ++ ++|+..++++ ..+|++..++..||.++..+|+...
T Consensus 263 ~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~----------~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~---- 327 (382)
T 2h6f_A 263 TLEMIKLVPHNESAWNYLKGILQDRGLSKY----------PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC---- 327 (382)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTTTCGGGC----------HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHccCccch----------HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc----
Confidence 99999999999999999999999988 45 9999999998 9999999999999999999874310
Q ss_pred cCCCCCCCcchHHHHHHHHHHHH-HhcCccHHHHHHHHH
Q 017806 318 TVNPREVSPNELYSQSAIYIAAA-HALKPSYSVYSSALR 355 (365)
Q Consensus 318 ~~~~~~~~~~~~~~~a~~~~~~a-~~~~~~~~~~~~al~ 355 (365)
....+.+..+..+|.++ ..++|....++.-++
T Consensus 328 ------~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 328 ------DNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 00112346788888998 899998887766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-22 Score=181.41 Aligned_cols=224 Identities=14% Similarity=0.059 Sum_probs=170.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh---h----------------------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE---E----------------------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~---~----------------------~~~~~~~~~~A~~~ 146 (365)
+..+|.++.+++.+|.++. ..|++++|+..|++++..+| . .+...|++++|+.+
T Consensus 64 ~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 64 IALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5668889999999999994 99999999999999999988 3 34456999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
|+++++.+|.++.++..+|.++...|+ +++|+..|+++++++|+++.+++.+|.++.. .|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~ 204 (359)
T 3ieg_A 143 LDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDH 204 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Confidence 999999999999999999999999999 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHH------------HHHHHHHhcCcchhHH----------------------
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNN------------WGLALQELSAIVPARE---------------------- 272 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~------------lg~~~~~~~~~~~~~~---------------------- 272 (365)
++|+ ..|+++++.+|++..++.. +|.++...|+++.|..
T Consensus 205 ~~A~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 205 ELSL-------SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359)
T ss_dssp HHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 9999 4455555556665554432 2555555555411111
Q ss_pred ------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCcc
Q 017806 273 ------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (365)
Q Consensus 273 ------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 346 (365)
..|++++|+..|+++++.+|+++.++.++|.++...|+ +..+..+|.++..++|+
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM-------------------YDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhcCCC
Confidence 11223555555555555555555555555555555553 46677788888888898
Q ss_pred HHHHHHHHHhhhhh
Q 017806 347 YSVYSSALRLVRSM 360 (365)
Q Consensus 347 ~~~~~~al~~~~~~ 360 (365)
+......+..+...
T Consensus 339 ~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 339 DQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 88777777665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=209.04 Aligned_cols=165 Identities=28% Similarity=0.304 Sum_probs=146.2
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
...|+++++++++|.++. .+|++++|+.+|+++++++|++..+|++||.++..+|
T Consensus 3 gs~P~~a~al~nLG~~~~-------------------------~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g 57 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKR-------------------------EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 57 (723)
T ss_dssp ---CHHHHHHHHHHHHHH-------------------------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHH-------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 357889999999999883 4566778888888889999999999999999999999
Q ss_pred CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
+ +++|+.+|+++++++|+++.+|++||.++.. +|++++|+ +.|+++++++|+++.
T Consensus 58 ~--------------~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~----~g~~~~A~-------~~~~kAl~l~P~~~~ 112 (723)
T 4gyw_A 58 K--------------LQEALMHYKEAIRISPTFADAYSNMGNTLKE----MQDVQGAL-------QCYTRAIQINPAFAD 112 (723)
T ss_dssp C--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHH
T ss_pred C--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHH
Confidence 9 9999999999999999999999999999999 99999999 778999999999999
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+|+++|.+|..+|++ ++|+.+|+++++++|+++.++.+||.++..+|+...+...
T Consensus 113 a~~~Lg~~~~~~g~~----------~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 113 AHSNLASIHKDSGNI----------PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 999999999999996 9999999999999999999999999999999987655443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=173.89 Aligned_cols=209 Identities=20% Similarity=0.160 Sum_probs=170.8
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
.+.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|+++++.+|.+..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGS-EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888999995 999999999999999998876 35566999999999999999999999999999999
Q ss_pred HHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 168 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
+...|+ +++|+..|+++++++|.+..++..+|.++.. .|++++|+ ..++++++.+
T Consensus 101 ~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~ 155 (243)
T 2q7f_A 101 YVVKEM--------------YKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLAL-------PYLQRAVELN 155 (243)
T ss_dssp HHHTTC--------------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHH-------HHHHHHHHHC
T ss_pred HHHhcc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHH-------HHHHHHHHhC
Confidence 999999 9999999999999999999999999999999 99999999 7789999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
|++..++..+|.++...|++ ++|+..|++++..+|+++.++..+|.++...|+.
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------------- 209 (243)
T 2q7f_A 156 ENDTEARFQFGMCLANEGML----------DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR---------------- 209 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCC----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT----------------
T ss_pred CccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCH----------------
Confidence 99999999999999999997 9999999999999999999999999999999865
Q ss_pred hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhhh
Q 017806 328 ELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMV 361 (365)
Q Consensus 328 ~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~~ 361 (365)
..+..++.++..+.|++......+..+....
T Consensus 210 ---~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 210 ---EKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp ---THHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 4466777889999999988888887766543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=173.10 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=142.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...|++++|+..|+++++.+|+++.+++++|.++...|+ +++|+..|+++++++|+++.+++++
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL--------------VNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34567999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 213 AIAISDRAKMR-----------GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 213 g~~~~~~~~~~-----------g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
|.++.. . |++++|+ ..|+++++++|+++.+|+++|.++..+|++ ++|+
T Consensus 80 g~~~~~----~~~~~~~~~~~~g~~~~A~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~----------~~A~ 138 (217)
T 2pl2_A 80 SEAYVA----LYRQAEDRERGKGYLEQAL-------SVLKDAERVNPRYAPLHLQRGLVYALLGER----------DKAE 138 (217)
T ss_dssp HHHHHH----HHHTCSSHHHHHHHHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHH----hhhhhhhhcccccCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHcCCh----------HHHH
Confidence 999999 8 8888888 889999999999999999999999999996 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
..|+++++++ +++.+++++|.++...|+..++...+..++
T Consensus 139 ~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 139 ASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 999999999999999997765544433333
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=175.06 Aligned_cols=191 Identities=17% Similarity=0.252 Sum_probs=162.4
Q ss_pred hhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+..|++++|+.+|+++++++| .+..+++++|.++..+|+ +++|+.+|+++++++|++..+++.+|
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------------YKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------------HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 456778888888888999998 899999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-------QALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++.. +|++++|+ ..|+++++++|+++ .+|+++|.++...|++ ++|+..|++
T Consensus 84 ~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~ 142 (228)
T 4i17_A 84 AAYRD----MKNNQEYI-------ATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI----------EKAEENYKH 142 (228)
T ss_dssp HHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHH----cccHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH----------HHHHHHHHH
Confidence 99999 99999999 88999999999999 6699999999999986 999999999
Q ss_pred HHHhCCC--CHHHHHHHHHHHHHhhhhhhhhcCcCCCCC--------CCcchHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 287 AIQLQFD--FHRAIYNLGTVLYGLAEDTLRTGGTVNPRE--------VSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 287 al~~~p~--~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
+++++|+ ++.+++++|.++...|+............. ......|..+..+|.++..++|++......+..
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 9999999 999999999999999977222111100000 001134688999999999999999888887776
Q ss_pred hhhh
Q 017806 357 VRSM 360 (365)
Q Consensus 357 ~~~~ 360 (365)
++..
T Consensus 223 i~~~ 226 (228)
T 4i17_A 223 VKAM 226 (228)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=181.41 Aligned_cols=201 Identities=14% Similarity=0.048 Sum_probs=176.7
Q ss_pred hccCCCchHHHHhcCCChhHhhh-cHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAE-QNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g-~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|.++.+++.+|.++. ..| ++++|+.+|++++..+|. .+...|++++|+.+|+++++.+|.+..+
T Consensus 83 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 161 (330)
T 3hym_B 83 VDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161 (330)
T ss_dssp HHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHH
T ss_pred HHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHH
Confidence 5678888899999999984 888 899999999999988876 3456689999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+..+|.++...|+ +++|+.+|+++++++|+++.+++.+|.++.. .|++++|+ ..|
T Consensus 162 ~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~ 216 (330)
T 3hym_B 162 MLYIGLEYGLTNN--------------SKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAE-------KWF 216 (330)
T ss_dssp HHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHH
T ss_pred HHHHHHHHHHHhh--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHH-------HHH
Confidence 9999999999999 9999999999999999999999999999999 99999999 556
Q ss_pred HHHHhcC---------CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 241 EKAVQLN---------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 241 ~~al~~~---------p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
++++... |..+.++.++|.++...|++ ++|+.+|+++++++|+++.++.++|.++...|+.
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY----------AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH
Confidence 6666654 67789999999999999996 9999999999999999999999999999999988
Q ss_pred hhhhcCcCCCCCCCcch
Q 017806 312 TLRTGGTVNPREVSPNE 328 (365)
Q Consensus 312 ~~a~~~~~~~~~~~~~~ 328 (365)
.++...+..++...|.+
T Consensus 287 ~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDD 303 (330)
T ss_dssp HHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHHHHccCCCc
Confidence 77766666666666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=190.82 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
|++++|+.+|++++.++|+ ++.+++++|.++.. .|++++|+ ..|++++..+|+++.+|+++|.++..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEYDKAV-------DCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 5599999999999999999 89999999999999 99999999 77999999999999999999999999
Q ss_pred hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc-------------chHH
Q 017806 264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP-------------NELY 330 (365)
Q Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~-------------~~~~ 330 (365)
.|++ ++|+..|++++.++|+++.++.++|.++...|+..++...+..++...| ...|
T Consensus 264 ~g~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 264 GNQS----------EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp TTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred cCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 9996 9999999999999999999999999999999999888776655554433 3456
Q ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhhhhhhcc
Q 017806 331 SQSAIYIAAAHALKPSYSVYSSALRLVRSMVSI 363 (365)
Q Consensus 331 ~~a~~~~~~a~~~~~~~~~~~~al~~~~~~~~~ 363 (365)
......+...+..+.+...+.+++..++..+++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 366 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADARDLSTLLTMFGL 366 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCC
Confidence 667777788888877888888888877776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=175.47 Aligned_cols=205 Identities=18% Similarity=0.148 Sum_probs=179.4
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCC-------HHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPED-------YDA 160 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 160 (365)
..+.+++.+|.+++ ..|++++|+.+|++++..+.. ++...|++++|+.+|.++++++|.+ +.+
T Consensus 3 ~~a~~~~~~g~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFY-KARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678999999995 999999999999999988721 4566799999999999999999877 799
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--------------------------LCPTLHDAFYNWAI 214 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~ 214 (365)
+..+|.++...|+ +++|+.+|++++. .+|.+..++..+|.
T Consensus 82 ~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 82 FARIGNAYHKLGD--------------LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc--------------HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999999999 7777777777776 77888899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .|++++|+ ..|+++++.+|+++.+++++|.++...|++ ++|+.+|+++++.+|++
T Consensus 148 ~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 148 EYFT----KSDWPNAV-------KAYTEMIKRAPEDARGYSNRAAALAKLMSF----------PEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTC
T ss_pred HHHH----hcCHHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCHHH
Confidence 9999 99999999 779999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcC------ccHHHHHHHHHh
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK------PSYSVYSSALRL 356 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~------~~~~~~~~al~~ 356 (365)
+.++..+|.++...|+. ..+..++.++..+. |.+......+..
T Consensus 207 ~~~~~~l~~~~~~~g~~-------------------~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEY-------------------ASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhH-------------------HHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 99999999999999966 44666667777777 777766666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=194.33 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=177.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcH-HHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQN-NAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~-~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
....|.++.+++.+|.++. ..|++ ++|+.+|++++.++|. .+...|++++|+.+|+++++++|+ ..+
T Consensus 95 ~~~~~~~a~~~~~lg~~~~-~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 172 (474)
T 4abn_A 95 LGSAQVEAQALMLKGKALN-VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVS 172 (474)
T ss_dssp HTTCCCCHHHHHHHHHHHT-SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHH
T ss_pred hccCchhHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHH
Confidence 4667889999999999995 99999 9999999999999987 456679999999999999999999 799
Q ss_pred HHHHHHHHHHh---------cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc--------
Q 017806 161 LYNWALVLQES---------ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-------- 223 (365)
Q Consensus 161 ~~~lg~~~~~~---------~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-------- 223 (365)
+.++|.++..+ |+ +++|+.+|+++++++|+++.+|+++|.++.. .
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~ 234 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRH--------------VMDSVRQAKLAVQMDVLDGRSWYILGNAYLS----LYFNTGQNP 234 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHH--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHTTCCH
T ss_pred HHHHHHHHHHhccCChhhhhhh--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHhhcccc
Confidence 99999999998 77 9999999999999999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
|++++|+ ..|+++++++| +++.+|+++|.+|..+|++ ++|+..|+++++++|+++.++.+
T Consensus 235 g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~a~~~ 297 (474)
T 4abn_A 235 KISQQAL-------SAYAQAEKVDRKASSNPDLHLNRATLHKYEESY----------GEALEGFSQAAALDPAWPEPQQR 297 (474)
T ss_dssp HHHHHHH-------HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHH-------HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 8888888 88999999999 9999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCc
Q 017806 301 LGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 301 lg~~~~~~g~~~~a~~~~ 318 (365)
++.++..+|+...+...+
T Consensus 298 l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999888777644
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=181.47 Aligned_cols=230 Identities=14% Similarity=0.076 Sum_probs=183.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhh-hHHHHHHHHHHHHHhCCCCHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQR-ILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~-~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+..+|.+..++..++.++. ..|++++|+.++++++..+|. .+...| ++++|+.+|+++++.+|.+..+
T Consensus 49 l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 127 (330)
T 3hym_B 49 MEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127 (330)
T ss_dssp HHHCTTCTTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHH
T ss_pred HHcCCCChhhHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHH
Confidence 5677888888888888884 888899999988888888765 244457 8888999999998888888888
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|..+|.++...|+ +++|+.+|++++++.|++..++..+|.++.. .|++++|+ ..|
T Consensus 128 ~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~ 182 (330)
T 3hym_B 128 WIAYGHSFAVESE--------------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAE-------RFF 182 (330)
T ss_dssp HHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHH-------HHH
T ss_pred HHHHHHHHHHccC--------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHH-------HHH
Confidence 8889998888888 8899999999998888888888888888888 88888888 778
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhhhh
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ---------FDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~ 311 (365)
+++++.+|+++.+++++|.++...|++ ++|+.+|++++.+. |.++.++.++|.++...|+.
T Consensus 183 ~~al~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 183 SQALSIAPEDPFVMHEVGVVAFQNGEW----------KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 889999999999999999999999886 99999999999886 66778899999999999988
Q ss_pred hhhhcCcCCCCCCCcc--hHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 312 TLRTGGTVNPREVSPN--ELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 312 ~~a~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
.++...+..++...|. ..+......+...+..+.+...+.+++.+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 7777766655554444 334444555455555555555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-22 Score=181.85 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=150.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCC---CCH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNP---EDY 158 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p---~~~ 158 (365)
+..+|.++.+++.+|.++. ..|++++|+..|++++..+|. .+...|++++|+.+|+++++.+| ++.
T Consensus 30 l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 108 (359)
T 3ieg_A 30 VDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK 108 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH
Confidence 5678999999999999995 999999999999999998875 35567999999999999999999 889
Q ss_pred HHHHHH------------HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 159 DALYNW------------ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 159 ~~~~~l------------g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
.++..+ |.++...|+ +++|+.+|+++++.+|.++.++..+|.++.. .|++
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 170 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGAD--------------YTAAITFLDKILEVCVWDAELRELRAECFIK----EGEP 170 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----CCCH
Confidence 988888 688889999 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
++|+ ..++++++.+|+++.+++++|.++...|++ ++|+..|+++++.+|++..+
T Consensus 171 ~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~ 224 (359)
T 3ieg_A 171 RKAI-------SDLKAASKLKSDNTEAFYKISTLYYQLGDH----------ELSLSEVRECLKLDQDHKRC 224 (359)
T ss_dssp HHHH-------HHHHHHHTTCSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCccchHH
Confidence 9999 779999999999999999999999999997 55555555555555544443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-21 Score=165.17 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=185.4
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYN 163 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (365)
..|.++.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|++++..+|.+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYM-RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 46788899999999995 999999999999999998876 3556699999999999999999999999999
Q ss_pred HHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 164 WALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 164 lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+|.++... |+ +++|+.+|+++++ ..|.+..+++.+|.++.. .|++++|+ ..|
T Consensus 82 l~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~ 136 (225)
T 2vq2_A 82 YGWFLCGRLNR--------------PAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAE-------AYL 136 (225)
T ss_dssp HHHHHHTTTCC--------------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHH-------HHH
T ss_pred HHHHHHHhcCc--------------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence 99999999 99 9999999999999 677789999999999999 99999999 778
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF-DFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
+++++.+|++..++..+|.++...|++ ++|+..|++++..+| ++..++..++.++...|+.
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 198 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQL----------GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA-------- 198 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH--------
Confidence 999999999999999999999999996 999999999999999 9999998888888888754
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 320 NPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
..+..++..+....|++..+...+
T Consensus 199 -----------~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 199 -----------QAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp -----------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhCCCCHHHHHHh
Confidence 456667777777888887776554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=173.87 Aligned_cols=213 Identities=12% Similarity=0.012 Sum_probs=186.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~ 158 (365)
+..+|.++.+++.+|.++. ..|++++|+..|++++...+. .+...|++++|+.+|+++++.+|.+.
T Consensus 30 l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 30 EAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp HHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence 5778999999999999995 999999999999999994322 34556999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.++..+|.++...|+ +++|+.+|+++++++|.++.+++++|..... .+++++|+ .
T Consensus 109 ~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~ 163 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGN--------------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYY----NKEYVKAD-------S 163 (272)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH----TTCHHHHH-------H
T ss_pred HHHHHHHHHHHHccC--------------HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH----HHHHHHHH-------H
Confidence 999999999999999 9999999999999999999999999955555 66888888 8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcC---cchhHHhhhHHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHH
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSA---IVPAREKQTIVRTAISKFRAAIQLQ---FD-----FHRAIYNLGTVLYG 307 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~~~~~~~~~~~A~~~~~~al~~~---p~-----~~~~~~~lg~~~~~ 307 (365)
.|+++++.+|++..+++.+|.++..+++ + ++|+..|++++++. |+ ...++..+|.++..
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQ----------GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSS----------CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhh----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998 6 88999999999886 54 23688899999998
Q ss_pred hhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
.|+. ..+..++.++..++|++....+.++.+..
T Consensus 234 ~~~~-------------------~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 234 NRDK-------------------VKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp TTCH-------------------HHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cCCH-------------------HHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 8855 56777889999999999998888876654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=181.84 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=162.3
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------------hhhhhhhHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------GRSRQRILTFAAKRYANAI 151 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~A~~~~~~al 151 (365)
+..+|.++.+++.+|.++ ...|++++|+.+|++++.+.|. .+...|++++|+.+|++++
T Consensus 126 l~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 126 LELQPNNLKALMALAVSY-TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHH-HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 445666677777777777 3777777777777777776654 2233588999999999999
Q ss_pred HhCCC--CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 152 ERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 152 ~~~p~--~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
+++|. ++.++.++|.++...|+ +++|+.+|+++++++|+++.+|+++|.++.. .|++++|
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A 266 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGE--------------FNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDRSEEA 266 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHH
Confidence 99999 89999999999999999 9999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC------------CHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD------------FHRA 297 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~ 297 (365)
+ ..|+++++++|+++.+++++|.+|..+|++ ++|+.+|+++++++|+ +..+
T Consensus 267 ~-------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 329 (365)
T 4eqf_A 267 V-------EAYTRALEIQPGFIRSRYNLGISCINLGAY----------REAVSNFLTALSLQRKSRNQQQVPHPAISGNI 329 (365)
T ss_dssp H-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHCC------------CHH
T ss_pred H-------HHHHHHHhcCCCchHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccCCCcccchhhhHHHH
Confidence 9 779999999999999999999999999997 9999999999999887 3678
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 017806 298 IYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~ 315 (365)
|.+++.++..+|+.+.+.
T Consensus 330 ~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 330 WAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHcCcHHHHH
Confidence 999999999999776443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=181.60 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=152.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.++.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+..|+++++.+|.+...+
T Consensus 48 ~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 126 (327)
T 3cv0_A 48 CQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG 126 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-
T ss_pred HHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH
Confidence 3455666666666666663 666666666666666666554 23344666666666666666666665555
Q ss_pred HHHHHHHHHhcCccccC-CC-CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLD-ST-SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~-~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
..+......... .... +. .....|++++|+.+|+++++.+|.+..++..+|.++.. .|++++|+ ..
T Consensus 127 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~ 194 (327)
T 3cv0_A 127 SVNLQADVDIDD-LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL----SNNYDSAA-------AN 194 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHhHHHHHHHH-HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hccHHHHH-------HH
Confidence 554100000000 0000 11 23344559999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
++++++.+|+++.++.++|.++...|++ ++|+..|+++++.+|++..++.++|.++...|+..++...+.
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 195 LRRAVELRPDDAQLWNKLGATLANGNRP----------QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8899999999999999999999999996 999999999999999999999999999999998877766554
Q ss_pred CCCCCCc
Q 017806 320 NPREVSP 326 (365)
Q Consensus 320 ~~~~~~~ 326 (365)
.++...|
T Consensus 265 ~a~~~~~ 271 (327)
T 3cv0_A 265 RAIYMQV 271 (327)
T ss_dssp HHHHHHT
T ss_pred HHHHhCC
Confidence 4444333
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-21 Score=182.25 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=154.0
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh-------------------------hhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG-------------------------RSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------~~~~~~~~~A~~~ 146 (365)
+..+|.++.+++.+|.++ ...|++++|+.+|++++..+|.. +...|++++|+.+
T Consensus 87 l~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLL-LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455677777777777777 47788888888888877776531 3445788888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
|+++++.+|.+..++..+|.++...|+ +++|+.+|+++++++|+++.+|+.+|.++.. .|++
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 227 (450)
T 2y4t_A 166 LDKILEVCVWDAELRELRAECFIKEGE--------------PRKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDH 227 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------------GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Confidence 888888888888888888888888888 8888888888888888888888888888888 8888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNW------------GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++|+ ..|++++..+|++..++..+ |.++...|++ ++|+.+|++++.+.|++
T Consensus 228 ~~A~-------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 228 ELSL-------SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY----------TDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCSS
T ss_pred HHHH-------HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCcc
Confidence 8888 66677777777777766555 6777777775 55555555555555554
Q ss_pred H----HHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc---------------hHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 295 H----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN---------------ELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 295 ~----~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
+ .++.++|.++...|+..++...+..++...|. ..+..+..+|.++..++|++......+.
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 2 24445555555555544444443333332222 1245556666666666666655544444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=178.34 Aligned_cols=225 Identities=14% Similarity=0.070 Sum_probs=183.3
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPED----YDALYN 163 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~ 163 (365)
++++++.+|.+++ ..|++++|+..|++++..+|. ++...|++++|+.+|+++++ .|.+ ..++..
T Consensus 2 n~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLF-KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHH
Confidence 3567888899995 999999999999999999876 45667999999999999999 4433 456999
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
+|.++...|+ +++|+.+|+++++++|++..++..+|.++.. .|++++|+ ..|+++
T Consensus 80 lg~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a 134 (272)
T 3u4t_A 80 YGKILMKKGQ--------------DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAI-------QYMEKQ 134 (272)
T ss_dssp HHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHH-------HHHGGG
T ss_pred HHHHHHHccc--------------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHH
Confidence 9999999999 9999999999999999999999999999999 99999999 789999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh---hhhhhcCcCC
Q 017806 244 VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE---DTLRTGGTVN 320 (365)
Q Consensus 244 l~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~a~~~~~~ 320 (365)
++.+|+++.+|+++|......+++ ++|+..|+++++++|++..++.++|.++..+|+ ...+...+..
T Consensus 135 l~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 135 IRPTTTDPKVFYELGQAYYYNKEY----------VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 999999999999999444444574 999999999999999999999999999999987 4444444333
Q ss_pred CCCCC---cc-------hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 321 PREVS---PN-------ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 321 ~~~~~---~~-------~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
++... +. ..|...+.++...+..+.+...+.+++.+.+.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 33321 22 34455555556666666666777777766543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=163.13 Aligned_cols=141 Identities=11% Similarity=-0.043 Sum_probs=130.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..+++++..+|+++.+++.+|.+|...|+ |++|+.+|+++++++|+++.+|+++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--------------YDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345778888888888888888889999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH-HHHHHHhCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK-FRAAIQLQFD 293 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~ 293 (365)
++.. .|++++|+ .+|+++++++|+++.+|+++|.+|...|++ ++|... ++++++++|+
T Consensus 74 ~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 74 LYEL----EENTDKAV-------ECYRRSVELNPTQKDLVLKIAELLCKNDVT----------DGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCSS----------SSHHHHHHHHHHHHSTT
T ss_pred HHHH----cCchHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhCcC
Confidence 9999 99999999 889999999999999999999999999997 777765 5999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 017806 294 FHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~ 310 (365)
++.++..++.++...|+
T Consensus 133 ~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999988875
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=168.68 Aligned_cols=207 Identities=18% Similarity=0.139 Sum_probs=186.6
Q ss_pred ccCCCc-hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 93 EGEDSV-TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 93 ~~~~~~-~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
..+|.. +.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|+++++.+|.+..++
T Consensus 30 ~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYL-QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHH-HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 345554 788999999994 999999999999999998865 35566999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
..+|.++...|+ +++|+.+|++++. ..|.+..++..+|.++.. .|++++|+ ..
T Consensus 109 ~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~ 163 (252)
T 2ho1_A 109 NNYGGFLYEQKR--------------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAK-------EY 163 (252)
T ss_dssp HHHHHHHHHTTC--------------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHHHHHHHHhH--------------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence 999999999999 9999999999999 889999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
|+++++.+|++..++..+|.++...|++ ++|+..|++++...|++..++..++.++...|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------- 225 (252)
T 2ho1_A 164 FEKSLRLNRNQPSVALEMADLLYKEREY----------VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR-------- 225 (252)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH--------
Confidence 9999999999999999999999999996 9999999999999999999999999999998865
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 320 NPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 320 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
..+..++.++..+.|+...+...+
T Consensus 226 -----------~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 226 -----------DTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp -----------HHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCCHHHHHHH
Confidence 456667788888888877765543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=185.47 Aligned_cols=186 Identities=17% Similarity=0.138 Sum_probs=144.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
..+|.++.+++.+|..+. ..|++++|+.+|++++..+|. ++...|++++|+.+|+++++.+|++..++.
T Consensus 20 ~~~p~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLL-AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ---CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 568899999999999995 999999999999999998875 456679999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHHHHhcCCHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNW------------AIAISDRAKMRGRTK 227 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------g~~~~~~~~~~g~~~ 227 (365)
.+|.++..+|+ +++|+.+|+++++++|++. .++..+ |.++.. .|+++
T Consensus 99 ~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~ 160 (450)
T 2y4t_A 99 QRGHLLLKQGK--------------LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYT 160 (450)
T ss_dssp HHHHHHHHTTC--------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHH
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHH
Confidence 99999999999 9999999999999999998 877766 555888 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+|+ ..|+++++.+|++..+++.+|.+|...|++ ++|+..|++++..+|+++.++.++|.++..
T Consensus 161 ~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 161 AAI-------AFLDKILEVCVWDAELRELRAECFIKEGEP----------RKAISDLKAASKLKNDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCG----------GGGHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHhCCCChHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999 667777777777777777777777777776 444444444444444444444444444444
Q ss_pred hhhhhhh
Q 017806 308 LAEDTLR 314 (365)
Q Consensus 308 ~g~~~~a 314 (365)
.|+...+
T Consensus 224 ~g~~~~A 230 (450)
T 2y4t_A 224 LGDHELS 230 (450)
T ss_dssp TTCHHHH
T ss_pred cCCHHHH
Confidence 4433333
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-21 Score=176.79 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=164.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------~~~~~~~~~~A~~~ 146 (365)
+..+|.++.+++.+|.++ ...|++++|+..|++++...|. ..+..|++++|+.+
T Consensus 125 l~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 203 (368)
T 1fch_A 125 LELKPDNQTALMALAVSF-TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL 203 (368)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHH
Confidence 345566666666666666 3667777777777766665543 11244888899999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 147 YANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 147 ~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
|+++++.+|. ++.++..+|.++...|+ +++|+.+|++++.++|+++.+++++|.++.. .|
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g 265 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGE--------------YDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GN 265 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----cC
Confidence 9999999999 89999999999999999 9999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC----------
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---------- 294 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------- 294 (365)
++++|+ ..|+++++++|+++.+++++|.++..+|++ ++|+..|++++.++|++
T Consensus 266 ~~~~A~-------~~~~~al~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 266 QSEEAV-------AAYRRALELQPGYIRSRYNLGISCINLGAH----------REAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCCCccccccch
Confidence 999999 779999999999999999999999999996 99999999999999988
Q ss_pred -HHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 295 -HRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 295 -~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
..+|.++|.++..+|+..++....
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhH
Confidence 899999999999999887666543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-20 Score=181.50 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=181.7
Q ss_pred hccCCCchH-------HHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCC
Q 017806 92 SEGEDSVTD-------ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNP 155 (365)
Q Consensus 92 ~~~~~~~~~-------a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p 155 (365)
+..+|+++. +++.+|.++ ...|++++|+.+|++++..+|. .+...|++++|+.+|+++++.+|
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFH-FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 566777654 578888888 4999999999999999999876 24455999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.++.++..+|.++...|+ +++|+..|++++.++|++..++..+|.++.. .|++++|+
T Consensus 308 ~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~----- 364 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQD--------------YKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESE----- 364 (537)
T ss_dssp TCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred CCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-----
Confidence 999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------------------------hh----------h
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------------KQ----------T 275 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------------~~----------~ 275 (365)
..|+++++.+|+++.++.++|.++...|+++.|.. .. |
T Consensus 365 --~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 365 --AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp --HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred --HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 77899999999999999999999999999977765 22 9
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCC
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV 324 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~ 324 (365)
++++|+.+|+++++.+|+++.++.++|.++...|+...+...+..++..
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999776555444333333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-21 Score=172.06 Aligned_cols=195 Identities=14% Similarity=0.097 Sum_probs=180.6
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------~~~~~~~~~~A~~~ 146 (365)
+..+|.++.+++.+|.++ ...|++++|+..|++++...|. .+...|++++|+.+
T Consensus 82 ~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 82 RMLDPKDIAVHAALAVSH-TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHH
T ss_pred HhcCcCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 566889999999999999 4999999999999999998765 14556999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 147 YANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 147 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
|+++++.+|.+..++..+|.++...|+ +++|+.+|++++.++|++..++..+|.++.. .|++
T Consensus 161 ~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 222 (327)
T 3cv0_A 161 LHAALEMNPNDAQLHASLGVLYNLSNN--------------YDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRP 222 (327)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCH
Confidence 999999999999999999999999999 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC------------C
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD------------F 294 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~ 294 (365)
++|+ ..|+++++.+|++..++.++|.++...|++ ++|+..|++++.++|+ +
T Consensus 223 ~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 285 (327)
T 3cv0_A 223 QEAL-------DAYNRALDINPGYVRVMYNMAVSYSNMSQY----------DLAAKQLVRAIYMQVGGTTPTGEASREAT 285 (327)
T ss_dssp HHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred HHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCccccccccchhhcC
Confidence 9999 779999999999999999999999999996 9999999999999999 7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
..++.++|.++..+|+..++...+..++
T Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999998887766654444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-21 Score=164.55 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=166.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|.++.+++.+|.++. ..|++++|+..|++++..++. .+...|++++|+.+|+++++.+|.+..++
T Consensus 50 l~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 128 (243)
T 2q7f_A 50 IEENKEDAIPYINFANLLS-SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128 (243)
T ss_dssp HTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 4578889999999999994 999999999999999998875 35566999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++...|+ +++|+..|++++.++|++..++..+|.++.. .|++++|+ ..|+
T Consensus 129 ~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~ 183 (243)
T 2q7f_A 129 YMLGTVLVKLEQ--------------PKLALPYLQRAVELNENDTEARFQFGMCLAN----EGMLDEAL-------SQFA 183 (243)
T ss_dssp HHHHHHHHHTSC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHH-------HHHH
T ss_pred HHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 7799
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++++.+|+++.++..+|.++...|++ ++|+.+|+++++++|++..++..++.+....+
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENR----------EKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCT----------THHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999999999997 99999999999999999999999887766544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=158.07 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=154.5
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
+++.+|+.+|.++ ...|++++|+..|++++.++|. .+...|++++|+..+.+++..+|.+..++..+|.
T Consensus 3 e~~~iy~~lG~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKK-RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4678999999999 5999999999999999999987 4566799999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++...++ ++.|+..+.+++.++|++..++..+|.++.. +|++++|+ ..|++++++
T Consensus 82 ~~~~~~~--------------~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~~l~~ 136 (184)
T 3vtx_A 82 ANFMIDE--------------KQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAI-------EAYEKTISI 136 (184)
T ss_dssp HHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHH
T ss_pred HHHHcCC--------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHH-------HHHHHHHHh
Confidence 9999999 9999999999999999999999999999999 99999999 789999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+|+++.+|+++|.+|..+|++ ++|+.+|++|++++|+++
T Consensus 137 ~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 137 KPGFIRAYQSIGLAYEGKGLR----------DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTHHHH
T ss_pred cchhhhHHHHHHHHHHHCCCH----------HHHHHHHHHHHhCCccCH
Confidence 999999999999999999996 999999999999999764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=166.51 Aligned_cols=197 Identities=16% Similarity=0.072 Sum_probs=171.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCC--
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPED-- 157 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~-- 157 (365)
..+|.++..++.+|..++ ..|++++|+..|++++...|. +++..|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFY-NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHH-HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 457788999999999995 999999999999999998765 3566799999999999999998854
Q ss_pred -HHHHHHHHHHHHH--------hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH-----------------HH
Q 017806 158 -YDALYNWALVLQE--------SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YN 211 (365)
Q Consensus 158 -~~~~~~lg~~~~~--------~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~ 211 (365)
..+++.+|.++.. .|+ +++|+..|+++++.+|++..++ +.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTD--------------TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHH--------------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchh--------------HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999 677 9999999999999999986665 88
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
+|.++.. .|++++|+ ..|+++++.+|+ .+.+++++|.+|..+|+...+....|++++|+..|++++
T Consensus 154 la~~~~~----~g~~~~A~-------~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 154 AARLYER----RELYEAAA-------VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHH----TTCHHHHH-------HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----ccCHHHHH-------HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 9999999 99999999 779999999998 567999999999999776555556678899999999999
Q ss_pred HhCCCCH---HHHHHHHHHHHHhhhhhhhh
Q 017806 289 QLQFDFH---RAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 289 ~~~p~~~---~~~~~lg~~~~~~g~~~~a~ 315 (365)
+..|+++ .+...++.++..+++...+.
T Consensus 223 ~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 223 QIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999994 67778888888888776444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-20 Score=181.47 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=176.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
...|.++.+++.+|.++ ...|++++|+.+|++++..+|. ++...|++++|+..|+++++.+|.+..+|.
T Consensus 367 ~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYY-LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHCTTSHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred hhCcccHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 45677788888888888 4888888888888888877655 345568888888888888888888888888
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.++...|+ +++|+..|+++++++|.++.+|+.+|.++.. .|++++|+ ..|++
T Consensus 446 ~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~ 500 (597)
T 2xpi_A 446 FLGMQHMQLGN--------------ILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAI-------NHFQN 500 (597)
T ss_dssp HHHHHHHHHTC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHH
T ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHH-------HHHHH
Confidence 88888888888 9999999999999999999999999999999 99999999 45555
Q ss_pred HHhc------CCCC-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 243 AVQL------NWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 243 al~~------~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
+++. +|++ ..+|..+|.++...|++ ++|+..|+++++++|+++.+|..+|.+|...|+.
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---- 566 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMY----------DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP---- 566 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH----
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----
Confidence 5555 6765 78999999999999996 9999999999999999999999999999999965
Q ss_pred cCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 316 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
..+..+|.++..++|++......+..
T Consensus 567 ---------------~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 567 ---------------GLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp ---------------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 45777789999999988776666553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=163.18 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=167.7
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh-h----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE-E----------GRSRQRILTFAAKRYANAIERNPEDYDALYN 163 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~-~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 163 (365)
.+.++.+++.+|.+++ ..|++++|+..|++++..+| . ++...|++++|+.+|+++++.+|++..++..
T Consensus 3 ~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 3 QTTDPNQLKNEGNDAL-NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp -CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred cccCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 3456799999999995 99999999999999999886 3 4566799999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-------DAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 164 lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
+|.++..+|+ +++|+.+|+++++++|+++ .+|+++|.++.. .|++++|+
T Consensus 82 l~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~------ 137 (228)
T 4i17_A 82 KSAAYRDMKN--------------NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAE------ 137 (228)
T ss_dssp HHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred HHHHHHHccc--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHH------
Confidence 9999999999 9999999999999999998 679999999999 99999999
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCc--c---------------hhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 237 TKNYEKAVQLNWN--SPQALNNWGLALQELSAI--V---------------PAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 237 ~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~--~---------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
..|+++++++|+ ++.+|+++|.+|...|+. + ......+.|++|+.+|+++++++|++..+
T Consensus 138 -~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 138 -ENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp -HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred -HHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 889999999999 999999999999999886 1 11225678899999999999999999999
Q ss_pred HHHHHHHHH
Q 017806 298 IYNLGTVLY 306 (365)
Q Consensus 298 ~~~lg~~~~ 306 (365)
...++.+..
T Consensus 217 ~~~l~~i~~ 225 (228)
T 4i17_A 217 KQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=151.23 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=115.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHH
Q 017806 149 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE 228 (365)
Q Consensus 149 ~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~ 228 (365)
++..++|+.+.++.++|.+++..|+ |++|+.+|+++++++|.++.+|+++|.++.. +|++++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~ 65 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD--------------YPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQR 65 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHH
Confidence 4556899999999999999999999 9999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 229 A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
|+ ..|+++++++|+++.+|+++|.+|..+|++ ++|+..|+++++++|++..++.+|+.|+
T Consensus 66 A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 66 AL-------DDCDTCIRLDSKFIKGYIRKAACLVAMREW----------SKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HH-------HHHHHHHHhhhhhhHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99 789999999999999999999999999996 9999999999999999999999999874
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=178.79 Aligned_cols=180 Identities=15% Similarity=0.126 Sum_probs=158.0
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCC
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRIL-TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~ 180 (365)
..+.+++++..+.+.....+. .+...|++ ++|+.+|+++++++|++..+|+.+|.+|...|+
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~------- 152 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD------- 152 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-------
Confidence 345688888888887777654 34556999 999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR---------GRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~---------g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
+++|+.+|+++++++|+ ..++.++|.++.. . |++++|+ ..|+++++++|+++
T Consensus 153 -------~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~----~~~~~~~~~~g~~~~A~-------~~~~~al~~~p~~~ 213 (474)
T 4abn_A 153 -------VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ----LQTDSGDEHSRHVMDSV-------RQAKLAVQMDVLDG 213 (474)
T ss_dssp -------HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT----CCCSCHHHHHHHHHHHH-------HHHHHHHHHCTTCH
T ss_pred -------HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH----hccCChhhhhhhHHHHH-------HHHHHHHHhCCCCH
Confidence 99999999999999999 7999999999998 8 6666666 88999999999999
Q ss_pred HHHHHHHHHHHHh--------cCcchhHHhhhHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 252 QALNNWGLALQEL--------SAIVPAREKQTIVRTAISKFRAAIQLQF---DFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 252 ~~~~~lg~~~~~~--------~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
.+|+++|.+|..+ |++ ++|+.+|++++.++| +++.+|+++|.++..+|+..++...+..
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKIS----------QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHH----------HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchH----------HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998 774 999999999999999 9999999999999999987766555544
Q ss_pred CCCCCcc
Q 017806 321 PREVSPN 327 (365)
Q Consensus 321 ~~~~~~~ 327 (365)
++..+|.
T Consensus 284 al~l~p~ 290 (474)
T 4abn_A 284 AAALDPA 290 (474)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 4444444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=192.39 Aligned_cols=189 Identities=16% Similarity=0.077 Sum_probs=167.5
Q ss_pred hHHHHHHHhh-hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhh--------ccChh----------hhhhhhhHHH
Q 017806 82 TMRELLTELK-SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVT--------GVDEE----------GRSRQRILTF 142 (365)
Q Consensus 82 ~~~~~l~~l~-~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al--------~~~~~----------~~~~~~~~~~ 142 (365)
...++...+. ...+|+++.+++..| . ..|++++|++.|++++ ..+|. .+...|++++
T Consensus 376 ~~~~~~~~L~~p~~~p~~~~a~~~~a---~-~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~ 451 (681)
T 2pzi_A 376 TANEIVTALSVPLVDPTDVAASVLQA---T-VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAK 451 (681)
T ss_dssp CHHHHHHHSCCBCCCTTSTTHHHHHH---T-TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHhhCCCccCCCCCcchHHhhc---c-cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHH
Confidence 3344444433 356788898988877 3 7899999999999999 66665 3566799999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 222 (365)
|+..|+++++.+|++..+|+++|.++..+|+ +++|+.+|+++++++|+++.+++++|.++..
T Consensus 452 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~---- 513 (681)
T 2pzi_A 452 ATRKLDDLAERVGWRWRLVWYRAVAELLTGD--------------YDSATKHFTEVLDTFPGELAPKLALAATAEL---- 513 (681)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
+|++++ + ..|+++++++|+++.+|+++|.++..+|++ ++|+..|+++++++|++..+++++|
T Consensus 514 ~g~~~~-~-------~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 514 AGNTDE-H-------KFYQTVWSTNDGVISAAFGLARARSAEGDR----------VGAVRTLDEVPPTSRHFTTARLTSA 575 (681)
T ss_dssp HTCCCT-T-------CHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHTSCTTSTTHHHHHHHHH
T ss_pred cCChHH-H-------HHHHHHHHhCCchHHHHHHHHHHHHHcCCH----------HHHHHHHHhhcccCcccHHHHHHHH
Confidence 999999 9 789999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHhhh
Q 017806 303 TVLYGLAE 310 (365)
Q Consensus 303 ~~~~~~g~ 310 (365)
.++...++
T Consensus 576 ~~~~~~~~ 583 (681)
T 2pzi_A 576 VTLLSGRS 583 (681)
T ss_dssp HHTC----
T ss_pred HHHHccCC
Confidence 99977553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=163.69 Aligned_cols=200 Identities=10% Similarity=-0.017 Sum_probs=161.2
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhcc--Chh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGV--DEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~--~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
+|....++..++..+ ...|+.++|+..+++.+.. +|. .+...|++++|+.+|++ |.+..++.
T Consensus 61 ~~~~~~a~~~la~~~-~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYL-ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHH-HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHH
T ss_pred CChhHHHHHHHHHHH-cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHH
Confidence 455667777778777 4788888888888887754 343 34455888888888887 78888888
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI--AISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~--~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
.+|.++..+|+ +++|+..|+++++++|++.......+. ++.. .|++++|+ ..|
T Consensus 135 ~l~~~~~~~g~--------------~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~~~~~eA~-------~~~ 189 (291)
T 3mkr_A 135 MTVQILLKLDR--------------LDLARKELKKMQDQDEDATLTQLATAWVSLAAG----GEKLQDAY-------YIF 189 (291)
T ss_dssp HHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----TTHHHHHH-------HHH
T ss_pred HHHHHHHHCCC--------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----chHHHHHH-------HHH
Confidence 88888888888 999999999999999887644333332 2223 57888888 779
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
+++++.+|+++.+|+++|.++..+|++ ++|+..|++++.++|+++.++.++|.++..+|+..
T Consensus 190 ~~~l~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~-------- 251 (291)
T 3mkr_A 190 QEMADKCSPTLLLLNGQAACHMAQGRW----------EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP-------- 251 (291)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH--------
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH--------
Confidence 999999999999999999999999996 99999999999999999999999999999999764
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCccHHHHHHH
Q 017806 321 PREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 353 (365)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~a 353 (365)
..+..++.++..++|+++.....
T Consensus 252 ----------eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 252 ----------EVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp ----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCChHHHHH
Confidence 34566778888888887765543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=182.66 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=168.6
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
|.++.+++.+|.++ ...|++++|+.+|++++..+|. ++...|++++|+..|+++++.+|.+..++..+|
T Consensus 302 ~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 380 (597)
T 2xpi_A 302 EKSSDLLLCKADTL-FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380 (597)
T ss_dssp GGCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred CchHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 56677777778777 3778888888888877766653 334456666666666666666666666666666
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ---------- 235 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~---------- 235 (365)
.+|...|+ +++|+..|+++++++|.+..+|+.+|.++.. .|++++|+..|++
T Consensus 381 ~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 381 IYYLCVNK--------------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHHHHhcc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchH
Confidence 66666666 6666666666666666666666666666666 6666666644322
Q ss_pred -----------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh------CC
Q 017806 236 -----------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL------QF 292 (365)
Q Consensus 236 -----------------A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p 292 (365)
|+..|+++++.+|+++.+|+.+|.+|...|++ ++|+..|+++++. +|
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM----------QTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhhhccccch
Confidence 34677777777777778888888888877775 9999999999998 66
Q ss_pred CC-HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc--hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 293 DF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN--ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 293 ~~-~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
++ ..+|..+|.++...|+..++...+..+....|. ..|......+...+..+.+...+.+++++.+.
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 65 789999999999999998888777666655554 34666666667777777777777777776554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=189.66 Aligned_cols=173 Identities=21% Similarity=0.297 Sum_probs=157.6
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
..|++++++++||.++..+|+ +++|+.+|+++++++|+++.++++||.++.. +|++++|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~--------------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~----~g~~~eA~-- 63 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGN--------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEAL-- 63 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred CCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH--
Confidence 468999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
..|+++++++|+++.+|+++|.+|..+|++ ++|+++|+++++++|+++.++++||.++..+|+..
T Consensus 64 -----~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~----------~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 64 -----MHYKEAIRISPTFADAYSNMGNTLKEMQDV----------QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp -----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred hhhcCcCCCCCCCcc--hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 313 LRTGGTVNPREVSPN--ELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 313 ~a~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
+++..+..++..+|. ..+......+......+.+...+.+++.+.++.
T Consensus 129 eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999888888888776 346666667677788888888888888776653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=181.00 Aligned_cols=190 Identities=14% Similarity=0.035 Sum_probs=159.1
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------h--hh--hhhhHHHHHHHHHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------G--RS--RQRILTFAAKRYANAIE 152 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~--~~--~~~~~~~A~~~~~~al~ 152 (365)
..+|....++.++|.+|. .+|++++|+.+|++++.+.+. + +. ..++|++|+.+|+++++
T Consensus 88 ~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 88 QAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp GCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 346777788999999994 999999999999999876432 1 11 23689999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
++|+++.++..+|.++..+++ .+++++|+..|+++++++|++..++.++|..+.......|++++|+
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~-----------~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~-- 233 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDN-----------WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE-- 233 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHH-----------SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHH--
T ss_pred hCCCCHHHHHHHHHHHHHhcC-----------chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHH--
Confidence 999999999999999876644 1116889999999999999999999999988877222245566666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+.|++++..+|+++.++.++|.+|...|++ ++|+..|+++++.+|+++.+++++|.+|...+..
T Consensus 234 -----~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 234 -----KLVEEALEKAPGVTDVLRSAAKFYRRKDEP----------DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp -----HHHHHHHHHCSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhCccHHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999996 9999999999999999999999999999776543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=178.90 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhcCcccc-------------------CCCCchhhhHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYD-------ALYNWALVLQESADNVSL-------------------DSTSPSKDALLEEA 191 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~a-------------------~~~~~~~~~~~~~A 191 (365)
|++++|+..|+++++.+|++.. ++..+|.++...|++..+ .+......|++++|
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 3566677777777777777654 355555666666662211 00011111225555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 271 (365)
+.+|+++++++|+++.++..+|.++.. .|++++|+ ..|+++++.+|++..+|.++|.++...|++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~la~~~~~~g~~---- 360 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFI----LQDYKNAK-------EDFQKAQSLNPENVYPYIQLACLLYKQGKF---- 360 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCSHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----
Confidence 555555555555555555555555555 55555555 667777777777777777777777777775
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc------------------------
Q 017806 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN------------------------ 327 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~------------------------ 327 (365)
++|+..|++++..+|+++.++.++|.++...|+...+...+..++...|.
T Consensus 361 ------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 361 ------TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp ------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999887776554333222111
Q ss_pred -------hHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 328 -------ELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 328 -------~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
..+..+..+|.++...+|.+.....
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 466 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4566677777777777776554433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=161.39 Aligned_cols=171 Identities=16% Similarity=0.039 Sum_probs=161.4
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccc
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS 176 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 176 (365)
+.+++.+|.++ ...|++++|+.+|++++.+.+. .+...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 79 ~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (258)
T 3uq3_A 79 SKSFARIGNAY-HKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--- 154 (258)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC---
Confidence 68999999999 4999999999999999998876 45667999999999999999999999999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 017806 177 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (365)
Q Consensus 177 a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~ 256 (365)
+++|+.+|+++++++|.++.+++++|.++.. .|++++|+ ..|+++++.+|+++.+|..
T Consensus 155 -----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 155 -----------WPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAI-------ADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp -----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHH
T ss_pred -----------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhCHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 7799999999999999999
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVL 305 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~ 305 (365)
+|.++..+|++ ++|+.+|+++++++ |++..++..++.++
T Consensus 213 l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 213 KATAQIAVKEY----------ASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHhhH----------HHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999999996 99999999999999 99998888887653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=150.43 Aligned_cols=137 Identities=17% Similarity=0.112 Sum_probs=124.1
Q ss_pred hcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 104 SQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 104 ~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
.+|.++ ...|++++|+..+++++..+|. .++..|++++|+.+|+++++++|+++.+|+++|.++..+|+
T Consensus 2 ~LG~~~-~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 2 PLGSMR-RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -----C-CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HhHHHH-HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 478899 5999999999999999999876 45667999999999999999999999999999999999999
Q ss_pred ccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHhcCCCCHH
Q 017806 174 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN-YEKAVQLNWNSPQ 252 (365)
Q Consensus 174 ~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~-~~~al~~~p~~~~ 252 (365)
+++|+.+|+++++++|+++.+++++|.++.. .|++++|. +. ++++++++|+++.
T Consensus 81 --------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa-------~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 81 --------------TDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRA-------KYWVERAAKLFPGSPA 135 (150)
T ss_dssp --------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHH-------HHHHHHHHHHSTTCHH
T ss_pred --------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHHHhCcCCHH
Confidence 9999999999999999999999999999999 99998877 44 5899999999999
Q ss_pred HHHHHHHHHHHhcC
Q 017806 253 ALNNWGLALQELSA 266 (365)
Q Consensus 253 ~~~~lg~~~~~~~~ 266 (365)
++..++.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999988876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=153.41 Aligned_cols=161 Identities=17% Similarity=0.086 Sum_probs=133.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYN----------------WALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~a 198 (365)
+..|++++|+.+|+++++.+|+++.+|+. +|.++..+|+ +++|+.+|+++
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~a 80 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------------YDKAYLFYKEL 80 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------------HHHHHHHHHHH
Confidence 45577888888888888888888888888 9999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 199 l~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
++++|+++.+++++|.++.. .|++++|+ ..|+++++++|+++.+|+++|.+|...|+. ...
T Consensus 81 l~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~~~~--------~~~ 141 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQVC----RGQEKDAL-------RMYEKILQLEADNLAANIFLGNYYYLTAEQ--------EKK 141 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHhHH--------HHH
Confidence 99999999999999999999 99999999 889999999999999999999999887752 236
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHH
Q 017806 279 TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 348 (365)
.+...|++++...|. ..+++++|.++..+|+. ..+..+|.++..+.|+..
T Consensus 142 ~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~-------------------~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 142 KLETDYKKLSSPTKM-QYARYRDGLSKLFTTRY-------------------EKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHC---CCCHH-HHHHHHHHHHHHHHHTH-------------------HHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHhCCCch-hHHHHHHHHHHHHccCH-------------------HHHHHHHHHHHHhCCCHH
Confidence 778888888754432 35788899999988855 446666677777777654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-20 Score=176.68 Aligned_cols=210 Identities=14% Similarity=0.103 Sum_probs=182.2
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|. ..+++.+|.++ ...|++++|+..|++++..+|. .+...|++++|+.+|+++++.+|.+..++
T Consensus 264 l~~~~~-~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 264 IELFPR-VNSYIYMALIM-ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHHCCC-HHHHHHHHHHH-HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred HhhCcc-HHHHHHHHHHH-HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 455677 88899999999 4999999999999999988875 34556899999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+ ..|+
T Consensus 342 ~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~ 396 (514)
T 2gw1_A 342 IQLACLAYRENK--------------FDDCETLFSEAKRKFPEAPEVPNFFAEILTD----KNDFDKAL-------KQYD 396 (514)
T ss_dssp HHHHHHTTTTTC--------------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----TTCHHHHH-------HHHH
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----CCCHHHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 6688
Q ss_pred HHHhcCCCCHH------HHHHHHHHHHH---hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 242 KAVQLNWNSPQ------ALNNWGLALQE---LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 242 ~al~~~p~~~~------~~~~lg~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
+++..+|++.. +++++|.++.. .|++ ++|+..|++++..+|+++.++..+|.++...|+..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF----------IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 88888887754 99999999999 8886 99999999999999999999999999999999664
Q ss_pred hhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
.+..+|.++..++|.+.....++...
T Consensus 467 -------------------~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 467 -------------------EAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp -------------------HHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 46666677777777776665555433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=178.61 Aligned_cols=201 Identities=13% Similarity=0.046 Sum_probs=164.4
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh--------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG-------------------------------------- 133 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------- 133 (365)
+..+|+++.+++.+|.++. ..|++++|+..|++++..+|..
T Consensus 66 l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANE-GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred hccChHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5678999999999999994 9999999999999998877510
Q ss_pred ---------------------------------------------------hh---hhhhHHHHHHHHHHHHH-----h-
Q 017806 134 ---------------------------------------------------RS---RQRILTFAAKRYANAIE-----R- 153 (365)
Q Consensus 134 ---------------------------------------------------~~---~~~~~~~A~~~~~~al~-----~- 153 (365)
.+ ..|++++|+.+|+++++ +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 11 26899999999999999 5
Q ss_pred -C-------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Q 017806 154 -N-------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 154 -~-------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
+ |.+..+++.+|.++...|+ +++|+..|+++++.+|+ ..++..+|.++.. .|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~----~~~ 285 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKND--------------PLGAHEDIKKAIELFPR-VNSYIYMALIMAD----RND 285 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSC--------------HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT----SSC
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH----CCC
Confidence 4 5557789999999999999 99999999999999999 9999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------------------hhhHHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------------KQTIVRTAI 281 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------------~~~~~~~A~ 281 (365)
+++|+ ..|++++..+|++..++..+|.++...|+++.|.. ..|++++|+
T Consensus 286 ~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 286 STEYY-------NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp CTTGG-------GHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHH-------HHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99998 55666666666666666666666666666654443 445568888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
..|++++..+|+++.++.++|.++...|+...+...+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888887777655443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-19 Score=168.75 Aligned_cols=207 Identities=13% Similarity=-0.010 Sum_probs=168.6
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------------hhhhhhhHHHHHHHHHHHHHhC
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------------GRSRQRILTFAAKRYANAIERN 154 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~A~~~~~~al~~~ 154 (365)
..+.....+..+|.++. ..|++++|+..|++++.+.+. .+...|++++|+.+|++++++.
T Consensus 46 ~~~~~a~~yn~Lg~~~~-~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKH-LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp C---CCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 34455677889999994 999999999999999886321 3556799999999999999873
Q ss_pred --------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 155 --------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 155 --------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
+..+.++.++|.++...|. ++|++|+.+|+++++++|+++.++.++|.++.. ....++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~-l~~~~~~ 191 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGG------------NQNERAKVCFEKALEKKPKNPEFTSGLAIASYR-LDNWPPS 191 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCT------------THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHSCCC
T ss_pred HhcccccchhhHHHHHHHHHHHHHHcc------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCchHH
Confidence 4568899999998887764 349999999999999999999999999998654 1115677
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
++|+ ..|+++++++|+++.++.++|..+...+.. .+++++|+.+|++++..+|+++.++.++|.++.
T Consensus 192 ~~al-------~~~~~al~l~p~~~~~~~~l~~~~~~~~~~------~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 192 QNAI-------DPLRQAIRLNPDNQYLKVLLALKLHKMREE------GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp CCTH-------HHHHHHHHHCSSCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHhhcCCcchHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 7888 779999999999999999999988887653 445689999999999999999999999999999
Q ss_pred HhhhhhhhhcCcCCCCCCCcc
Q 017806 307 GLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~ 327 (365)
..|+...+...+..++...|.
T Consensus 259 ~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred HcCchHHHHHHHHHHHHhCCC
Confidence 999888777766666665555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=178.15 Aligned_cols=158 Identities=9% Similarity=-0.043 Sum_probs=151.5
Q ss_pred hhhhhHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 135 SRQRILTFAAKRYANAI--------ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
...|++++|+..|++++ +.+|++..+++.+|.++..+|+ +++|+..|+++++++|++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD--------------VAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHCCCH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHhccCcchH
Confidence 34589999999999999 9999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.+|+++|.++.. .|++++|+ ..|+++++++|+++.+|+++|.++..+|++ ++ +.+|++
T Consensus 468 ~a~~~lg~~~~~----~g~~~~A~-------~~~~~al~l~P~~~~~~~~lg~~~~~~g~~----------~~-~~~~~~ 525 (681)
T 2pzi_A 468 RLVWYRAVAELL----TGDYDSAT-------KHFTEVLDTFPGELAPKLALAATAELAGNT----------DE-HKFYQT 525 (681)
T ss_dssp HHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCSHHHHHHHHHHHHHTCC----------CT-TCHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHcCCh----------HH-HHHHHH
Confidence 999999999999 99999999 889999999999999999999999999997 99 999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch
Q 017806 287 AIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE 328 (365)
Q Consensus 287 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~ 328 (365)
+++++|+++.+++++|.++..+|+..++...+..++..+|..
T Consensus 526 al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 526 VWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 999999999999999999999999999999999999988875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-19 Score=155.52 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=94.8
Q ss_pred HHhcCCChhHhhhcHHHHHHHHHHhhccC----hh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 102 SFSQGNTPHQLAEQNNAAMELINSVTGVD----EE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 102 ~~~~g~~~~~~~g~~~~A~~~~~~al~~~----~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
.+.++..+ ...|++++|+..|++++... +. .+...|++++|+.+|+++++++|.+..++..+|.+
T Consensus 8 ~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 86 (275)
T 1xnf_A 8 SEVLAVPL-QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86 (275)
T ss_dssp GGGSCCCC-CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred Ccceeecc-CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34455555 36666666666666666652 11 23444666677777777777666666666677777
Q ss_pred HHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 168 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
+...|+ +++|+.+|+++++++|++..+++.+|.++.. .|++++|+ ..|+++++++
T Consensus 87 ~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~a~~~~ 141 (275)
T 1xnf_A 87 LTQAGN--------------FDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQ-------DDLLAFYQDD 141 (275)
T ss_dssp HHHTTC--------------HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHC
T ss_pred HHHccC--------------HHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHH-------HHHHHHHHhC
Confidence 666666 6777777777776666666666777776666 66666666 5566666666
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
|++...+..++.+ ...|++ ++|+..|++++...|.+
T Consensus 142 ~~~~~~~~~~~~~-~~~~~~----------~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 142 PNDPFRSLWLYLA-EQKLDE----------KQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp TTCHHHHHHHHHH-HHHHCH----------HHHHHHHHHHHHHSCCC
T ss_pred CCChHHHHHHHHH-HHhcCH----------HHHHHHHHHHHhcCCcc
Confidence 6666555444433 334553 55555555555444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=140.20 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=109.1
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 172 (365)
..+|+..+++..+|..+ +..|+|++|+.+|+++++++|.++.+|+++|.++..+|
T Consensus 7 ~inP~~a~~~~~~G~~~-------------------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 61 (126)
T 4gco_A 7 YINPELAQEEKNKGNEY-------------------------FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61 (126)
T ss_dssp CCCHHHHHHHHHHHHHH-------------------------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHCHHHHHHHHHHHHHH-------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc
Confidence 35677777777777766 46677899999999999999999999999999999999
Q ss_pred CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 173 DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
+ +++|+..|+++++++|+++.+|+++|.++.. +|++++|+ ..|+++++++|++..
T Consensus 62 ~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~-------~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 62 E--------------FQRALDDCDTCIRLDSKFIKGYIRKAACLVA----MREWSKAQ-------RAYEDALQVDPSNEE 116 (126)
T ss_dssp C--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHH
T ss_pred c--------------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHHCcCCHH
Confidence 9 9999999999999999999999999999999 99999999 889999999999999
Q ss_pred HHHHHHHHH
Q 017806 253 ALNNWGLAL 261 (365)
Q Consensus 253 ~~~~lg~~~ 261 (365)
++.+++.++
T Consensus 117 a~~~l~~~l 125 (126)
T 4gco_A 117 AREGVRNCL 125 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=143.62 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=152.1
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
.....++.+|.++. ..|++++|+..|++++...|. .+...|++++|+.+|+++++.+|.+..++..+|.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 6 IRQVYYRDKGISHA-KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHH-HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34577888999994 999999999999999998865 3556799999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++...|+ +++|+.+|++++.++|.+..++..+|.++.. .|++++|+ ..++++++.
T Consensus 85 ~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~ 139 (186)
T 3as5_A 85 TYVQVQK--------------YDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAI-------DSFKIALGL 139 (186)
T ss_dssp HHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHH
T ss_pred HHHHhcC--------------HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHH-------HHHHHHHhc
Confidence 9999999 9999999999999999999999999999999 99999999 778999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
+|+++.++..+|.++...|++ ++|+.+|+++++++|++..
T Consensus 140 ~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 140 RPNEGKVHRAIAFSYEQMGRH----------EEALPHFKKANELDEGASV 179 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHCCCG
T ss_pred CccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCchh
Confidence 999999999999999999996 9999999999999887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=146.93 Aligned_cols=122 Identities=17% Similarity=0.049 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 218 (365)
++-.+-..+++++.++|++..+++.+|.++...|+ +++|+.+|++++.++|+++.+|+++|.++..
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGR--------------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445556788899999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 219 ~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
+|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+.+|++++++.|+..
T Consensus 83 ----~g~~~~Ai-------~~~~~al~l~P~~~~~~~~lg~~~~~lg~~----------~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 83 ----KEQFQQAA-------DLYAVAFALGKNDYTPVFHTGQCQLRLKAP----------LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ----TTCHHHHH-------HHHHHHHHHSSSCCHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCHH
T ss_pred ----HccHHHHH-------HHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCHH
Confidence 99999999 889999999999999999999999999996 999999999999999864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=161.92 Aligned_cols=188 Identities=8% Similarity=-0.014 Sum_probs=159.3
Q ss_pred hccCCCchHHHHhcCCChhHh-------hhcH-------HHHHHHHHHhhc-cChhh----------hhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQL-------AEQN-------NAAMELINSVTG-VDEEG----------RSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~----------~~~~~~~~~A~~~ 146 (365)
+..+|.++.+|+.+|.++. . .|++ ++|+..|++++. ++|.. +...|++++|+..
T Consensus 43 l~~~p~~~~~w~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 121 (308)
T 2ond_A 43 LLVLGHHPDIWYEAAQYLE-QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH-HhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5678999999999998873 3 3664 899999999999 67761 3345899999999
Q ss_pred HHHHHHhCCCCHH-HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Q 017806 147 YANAIERNPEDYD-ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 147 ~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
|+++++++|.++. +|.++|.++...|+ +++|+..|+++++.+|.+..+|...+.+... ..|+
T Consensus 122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~ 184 (308)
T 2ond_A 122 YNRLLAIEDIDPTLVYIQYMKFARRAEG--------------IKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKD 184 (308)
T ss_dssp HHHHHTSSSSCTHHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCC
T ss_pred HHHHHhccccCccHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCC
Confidence 9999999999887 89999999999999 9999999999999999988888877766543 0599
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh---CC-CCHHHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL---QF-DFHRAIYNL 301 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p-~~~~~~~~l 301 (365)
+++|+ ..|+++++.+|+++.+|.++|.++..+|++ ++|+..|++++.. .| +...+|..+
T Consensus 185 ~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 185 KSVAF-------KIFELGLKKYGDIPEYVLAYIDYLSHLNED----------NNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp HHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999 778888889999999999999999999996 9999999999995 55 378899999
Q ss_pred HHHHHHhhhhhhh
Q 017806 302 GTVLYGLAEDTLR 314 (365)
Q Consensus 302 g~~~~~~g~~~~a 314 (365)
+..+...|+...+
T Consensus 248 ~~~~~~~g~~~~a 260 (308)
T 2ond_A 248 LAFESNIGDLASI 260 (308)
T ss_dssp HHHHHHHSCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 9999888866533
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=151.15 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=160.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+...|++++|+.+|+++++.+|.+..++..+|.++...|+ +++|+..|+++++++|.+..++..+|
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME--------------PKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 4567899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
.++.. .|++++|+ ..|++++. .+|.+..++.++|.++...|++ ++|+.+|++++..+
T Consensus 113 ~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 113 GFLYE----QKRYEEAY-------QRLLEASQDTLYPERSRVFENLGLVSLQMKKP----------AQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHH----TTCHHHHH-------HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHC
T ss_pred HHHHH----HhHHHHHH-------HHHHHHHhCccCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcC
Confidence 99999 99999999 77888888 7899999999999999999996 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch--HHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE--LYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 292 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
|.+..++..+|.++...|+..++...+..++...|.. .+.....++......+.+...+..++.+.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999888877666665555543 23333344344444444444455554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-19 Score=154.93 Aligned_cols=195 Identities=11% Similarity=-0.004 Sum_probs=144.5
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
.|.++.+++.+|.++. ..|++++|+.+|++++..+|. .+...|++++|+.+|+++++++|.+..++..+
T Consensus 39 ~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 39 DDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 4567899999999995 999999999999999999876 35566999999999999999999999999999
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
|.++...|+ +++|+.+|+++++++|++......++.+ .. .|++++|+. .+++++
T Consensus 118 a~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~----~~~~~~A~~-------~~~~~~ 171 (275)
T 1xnf_A 118 GIALYYGGR--------------DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ----KLDEKQAKE-------VLKQHF 171 (275)
T ss_dssp HHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH----HHCHHHHHH-------HHHHHH
T ss_pred HHHHHHhcc--------------HHHHHHHHHHHHHhCCCChHHHHHHHHH-HH----hcCHHHHHH-------HHHHHH
Confidence 999999999 9999999999999999998777666644 56 799999994 455555
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
...|.+...+. ++.++...++. ++|+..+++++...|. ++.++..+|.++...|+..++...+..
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISE----------QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCH----------HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCcchHHHH-HHHHHHHhcCH----------HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555544433 34444444443 5555555555554442 245555555555555555555555544
Q ss_pred CCCCCcc
Q 017806 321 PREVSPN 327 (365)
Q Consensus 321 ~~~~~~~ 327 (365)
++..+|.
T Consensus 241 al~~~p~ 247 (275)
T 1xnf_A 241 AVANNVH 247 (275)
T ss_dssp HHTTCCT
T ss_pred HHhCCch
Confidence 4444444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-18 Score=152.15 Aligned_cols=172 Identities=15% Similarity=0.156 Sum_probs=92.6
Q ss_pred CCchHHHHhcCCChhHh----hhcHHHHHHHHHHhhccChh--------hhhh----hhhHHHHHHHHHHHHHhCCCCHH
Q 017806 96 DSVTDASFSQGNTPHQL----AEQNNAAMELINSVTGVDEE--------GRSR----QRILTFAAKRYANAIERNPEDYD 159 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~----~g~~~~A~~~~~~al~~~~~--------~~~~----~~~~~~A~~~~~~al~~~p~~~~ 159 (365)
++++.+++.+|.++ .. .+++++|+.+|++++..+.. .+.. .+++++|+.+|+++++. +++.
T Consensus 35 ~~~~~a~~~lg~~~-~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~ 111 (273)
T 1ouv_A 35 LKENSGCFNLGVLY-YQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAE 111 (273)
T ss_dssp TTCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCCHHHHHHHHHHH-HcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCcc
Confidence 45555555555555 25 55555566655555555321 2233 45555566656555554 2555
Q ss_pred HHHHHHHHHHH----hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 160 ALYNWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 160 ~~~~lg~~~~~----~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
+++++|.++.. .++ +++|+.+|+++++.+ +..+++++|.++....-..+++++|+
T Consensus 112 a~~~lg~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~----- 170 (273)
T 1ouv_A 112 GCASLGGIYHDGKVVTRD--------------FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKAL----- 170 (273)
T ss_dssp HHHHHHHHHHHCSSSCCC--------------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH-----
T ss_pred HHHHHHHHHHcCCCcccC--------------HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHH-----
Confidence 55555655555 555 566666666655544 45555555555543000034555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
.+|+++++. +++.+++++|.+|.. .+++ ++|+.+|+++++.+| +.+++++|.++..
T Consensus 171 --~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~----------~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 171 --ASYDKACDL--KDSPGCFNAGNMYHHGEGATKNF----------KEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp --HHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCH----------HHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred --HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccH----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 555665554 245556666666665 5553 666666666665543 5556666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-18 Score=144.94 Aligned_cols=159 Identities=15% Similarity=0.059 Sum_probs=145.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...|++++|+.+|+++++.+|.+..++..+|.++...|+ +++|+.+|++++.++|.+..++..+
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV--------------NDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34567999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 213 AIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQ--LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 213 g~~~~~~~~~~-g~~~~A~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
|.++.. . |++++|+ ..|+++++ .+|.+..+++++|.++...|++ ++|+.+|++++.
T Consensus 83 ~~~~~~----~~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~ 141 (225)
T 2vq2_A 83 GWFLCG----RLNRPAESM-------AYFDKALADPTYPTPYIANLNKGICSAKQGQF----------GLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHT----TTCCHHHHH-------HHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHH
T ss_pred HHHHHH----hcCcHHHHH-------HHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 999999 9 9999999 66888887 6677789999999999999996 999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 290 LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 290 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
.+|++..++..+|.++...|+..++...+..++...|
T Consensus 142 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988777666555544444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=150.90 Aligned_cols=168 Identities=15% Similarity=0.068 Sum_probs=145.8
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWAL 166 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 166 (365)
.+|+++.+++.+|.++ ...|++++|+..|++ ..++. .+...|++++|+..|+++++.+|++.......+.
T Consensus 96 ~~P~~~~~~~~la~~~-~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 172 (291)
T 3mkr_A 96 VDVTNTTFLLMAASIY-FYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172 (291)
T ss_dssp CCCSCHHHHHHHHHHH-HHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-HHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence 3699999999999999 599999999999998 23322 3556799999999999999999998754444343
Q ss_pred HHH--HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017806 167 VLQ--ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (365)
Q Consensus 167 ~~~--~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al 244 (365)
+.. ..|+ +++|+.+|+++++.+|+++.+++++|.++.. +|++++|+ ..|++++
T Consensus 173 ~~l~~~~~~--------------~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~-------~~l~~al 227 (291)
T 3mkr_A 173 VSLAAGGEK--------------LQDAYYIFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAE-------GVLQEAL 227 (291)
T ss_dssp HHHHHCTTH--------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHH
T ss_pred HHHHhCchH--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHH
Confidence 333 2355 9999999999999999999999999999999 99999999 7899999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHH-HHHHHHHHHHhCCCCHHHHH
Q 017806 245 QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT-AISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 245 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~ 299 (365)
+.+|+++.+++++|.++...|+. .+ +..+++++++++|+++.+..
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~----------~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKP----------PEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999997 65 67899999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-18 Score=139.35 Aligned_cols=145 Identities=11% Similarity=0.082 Sum_probs=138.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.+...|++++|+..|+++++.+|.+..++..+|.++...|+ +++|+.+|+++++++|.+..++..+
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~ 82 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------------VDRGTELLERSLADAPDNVKVATVL 82 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34567899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
|.++.. .|++++|+ ..|++++..+|+++.++..+|.++...|++ ++|+.+|++++...|
T Consensus 83 a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 83 GLTYVQ----VQKYDLAV-------PLLIKVAEANPINFNVRFRLGVALDNLGRF----------DEAIDSFKIALGLRP 141 (186)
T ss_dssp HHHHHH----HTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCT
T ss_pred HHHHHH----hcCHHHHH-------HHHHHHHhcCcHhHHHHHHHHHHHHHcCcH----------HHHHHHHHHHHhcCc
Confidence 999999 99999999 778999999999999999999999999996 999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhh
Q 017806 293 DFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~ 312 (365)
+++.++..+|.++...|+..
T Consensus 142 ~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=171.03 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=150.1
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHh------CC
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIER------NP 155 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~------~p 155 (365)
+.....++.+|..++ ..|++++|+.+|++++...+. .+...|++++|+.+|++++++ .|
T Consensus 45 ~~~~~~l~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLC-NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 344567788899995 999999999999999998765 345569999999999999998 57
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHhcCC----
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------CPTLHDAFYNWAIAISDRAKMRGR---- 225 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~g~---- 225 (365)
....++..+|.++...|+ +++|+.+|++++.+ .+....++.++|.++.. .|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~ 185 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGR--------------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQ 185 (411)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCccccc
Confidence 788999999999999999 99999999999998 56678899999999999 999
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCcchhHH---------------------
Q 017806 226 ------TKEAEELWKQATKNYEKAVQL------NWNSPQALNNWGLALQELSAIVPARE--------------------- 272 (365)
Q Consensus 226 ------~~~A~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~~~~--------------------- 272 (365)
+.+|...+++|+..|++++++ .+....++.++|.++...|+++.|..
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 444444444444555555443 23445688888888888888733332
Q ss_pred ---------hhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 273 ---------KQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 273 ---------~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
..|++++|+.+|++++.+.+.. ..++.++|.++...|+..++...+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344556666666655554432 445555666666655555554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=156.58 Aligned_cols=175 Identities=9% Similarity=0.036 Sum_probs=146.6
Q ss_pred hcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCccccCCCCchhhhH
Q 017806 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPE------DYDALYNWALVLQESADNVSLDSTSPSKDAL 187 (365)
Q Consensus 114 g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~ 187 (365)
+++++|+..|+++.. .+...|++++|+.+|.+++++.+. .+.++.++|.+|..+|+
T Consensus 31 ~~~~~A~~~~~~a~~----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------------- 92 (292)
T 1qqe_A 31 YKFEEAADLCVQAAT----IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-------------- 92 (292)
T ss_dssp HHHHHHHHHHHHHHH----HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred ccHHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--------------
Confidence 469999999999843 456679999999999999998532 26789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhcCCCC------HHHH
Q 017806 188 LEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNS------PQAL 254 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~-g~~~~A~~~~~~A~~~~~~al~~~p~~------~~~~ 254 (365)
+++|+.+|++++++.|.. ..++.++|.++.. . |++++|+.. |++++++.|.. ..++
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~-------~~~Al~~~~~~~~~~~~~~~~ 161 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDC-------YELAGEWYAQDQSVALSNKCF 161 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHH-------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHH-------HHHHHHHHHhCCChHHHHHHH
Confidence 999999999999997753 5689999999999 8 999999955 55555554433 5689
Q ss_pred HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 255 NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR-------AIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 255 ~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
.++|.++..+|++ ++|+.+|++++.+.|++.. ++.++|.++..+|+...+...+..++...|.
T Consensus 162 ~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 162 IKCADLKALDGQY----------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHTTCH----------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHhCCH----------HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999996 9999999999999987643 6899999999999999988888777776665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-19 Score=142.45 Aligned_cols=132 Identities=16% Similarity=0.067 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 017806 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222 (365)
Q Consensus 143 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 222 (365)
+-..|++++.++|++..+++.+|.++...|+ +++|+..|++++.++|+++.+|+++|.++..
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 67 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGX--------------YEDAHXVFQALCVLDHYDSRFFLGLGACRQA---- 67 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----
Confidence 3456889999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.|++++|+ ..|++++.++|+++.+++++|.+|..+|++ ++|+.+|+++++++|+++.....+.
T Consensus 68 ~g~~~~A~-------~~~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 68 MGQYDLAI-------HSYSYGAVMDIXEPRFPFHAAECLLQXGEL----------AEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HhhHHHHH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCCcchHHHH
Confidence 99999999 889999999999999999999999999996 9999999999999998876655555
Q ss_pred HHHHHhh
Q 017806 303 TVLYGLA 309 (365)
Q Consensus 303 ~~~~~~g 309 (365)
.+...+.
T Consensus 131 ~~~~~l~ 137 (148)
T 2vgx_A 131 RVSSMLE 137 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=153.65 Aligned_cols=208 Identities=13% Similarity=0.034 Sum_probs=169.9
Q ss_pred HHHHHHHHHhhccChhh--------hh---------hhhhH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHh
Q 017806 117 NAAMELINSVTGVDEEG--------RS---------RQRIL-------TFAAKRYANAIE-RNPEDYDALYNWALVLQES 171 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~--------~~---------~~~~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~ 171 (365)
++|+..|++++..+|.. .+ ..|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 68889999999987761 11 12554 899999999999 7999999999999999999
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
|+ +++|+..|+++++++|.++. +|.++|.++.. .|++++|+ ..|+++++.+|.+
T Consensus 113 ~~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~-------~~~~~a~~~~p~~ 167 (308)
T 2ond_A 113 MK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGR-------MIFKKAREDARTR 167 (308)
T ss_dssp TC--------------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHH-------HHHHHHHTSTTCC
T ss_pred CC--------------HHHHHHHHHHHHhccccCccHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhcCCCC
Confidence 99 99999999999999999987 99999999999 99999999 7899999999999
Q ss_pred HHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCC---Cc
Q 017806 251 PQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV---SP 326 (365)
Q Consensus 251 ~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~---~~ 326 (365)
..+|...+.+... .|++ ++|+..|+++++.+|+++.+|.++|.++...|+...+...+..++.. .|
T Consensus 168 ~~~~~~~a~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp THHHHHHHHHHHHTSCCH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 8888877666544 5775 99999999999999999999999999999999998888777666653 33
Q ss_pred c---hHHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 327 N---ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 327 ~---~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
. ..|.....+....+..+.....+.++++..+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 2 34444444545555444455555666655554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-18 Score=143.61 Aligned_cols=168 Identities=14% Similarity=0.067 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN----------------WAIAISDRA 220 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~~ 220 (365)
..+.++..|..+...|+ +++|+.+|+++++++|+++.+|+. +|.++..
T Consensus 3 ~~~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-- 66 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQ--------------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-- 66 (208)
T ss_dssp CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH--
Confidence 56778999999999999 999999999999999999999999 9999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (365)
.|++++|+ ..|+++++++|+++.+|+++|.++...|++ ++|+.+|+++++++|+++.++++
T Consensus 67 --~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~ 127 (208)
T 3urz_A 67 --NRNYDKAY-------LFYKELLQKAPNNVDCLEACAEMQVCRGQE----------KDALRMYEKILQLEADNLAANIF 127 (208)
T ss_dssp --TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --CCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999 889999999999999999999999999996 99999999999999999999999
Q ss_pred HHHHHHHhhhhhh--hhcCcCCCCCCCcch-HHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 301 LGTVLYGLAEDTL--RTGGTVNPREVSPNE-LYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 301 lg~~~~~~g~~~~--a~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
+|.+++..|+... +...+.......+.. .+......+......+.+...+.+++.+.+.
T Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999988875433 233333344333332 1222233334455666666777777766543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=146.65 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=154.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HH
Q 017806 134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HD 207 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 207 (365)
++..|++++|+..|+++++.+|++ ..+++.+|.++..+|+ +++|+..|++++++.|++ +.
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--------------YLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHHHCCCCchhHH
Confidence 466789999999999999999999 9999999999999999 999999999999998854 67
Q ss_pred HHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHhcC
Q 017806 208 AFYNWAIAISDRA----KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQELSA 266 (365)
Q Consensus 208 ~~~~lg~~~~~~~----~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~~ 266 (365)
+++.+|.++.... ...|++++|+ ..|+++++.+|++..++ +++|.+|...|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~-------~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAI-------EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHH-------HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHH-------HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8999999986400 0046677777 88999999999987666 889999999999
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhc
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 343 (365)
+ ++|+..|++++...|+ .+.+++.+|.++..+|+...+.. ....+..+..+|.++...
T Consensus 164 ~----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~---------~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 164 Y----------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRAR---------QPERYRRAVELYERLLQI 224 (261)
T ss_dssp H----------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGG---------HHHHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhc---------ccchHHHHHHHHHHHHHH
Confidence 6 9999999999999998 56799999999999975532110 124568888899999999
Q ss_pred CccHHHHHHHHHhhhh
Q 017806 344 KPSYSVYSSALRLVRS 359 (365)
Q Consensus 344 ~~~~~~~~~al~~~~~ 359 (365)
.|+...+..+...+..
T Consensus 225 ~p~~~~~~~a~~~l~~ 240 (261)
T 3qky_A 225 FPDSPLLRTAEELYTR 240 (261)
T ss_dssp CTTCTHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHH
Confidence 9998777777665544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-19 Score=164.34 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=136.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----------
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------- 205 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 205 (365)
.+++++|+..|++++..+|.++.+++++|.+++..|+ |++|+.+|++++.++|++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK--------------YKQALLQYKKIVSWLEYESSFSNEEAQKA 191 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCCCCCSHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 4677889999999999999999999999999999999 999999999999999998
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 206 ----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
..+|+++|.++.. +|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+
T Consensus 192 ~~~~~~~~~nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~ 250 (336)
T 1p5q_A 192 QALRLASHLNLAMCHLK----LQAFSAAI-------ESCNKALELDSNNEKGLSRRGEAHLAVNDF----------ELAR 250 (336)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHH
Confidence 6999999999999 99999999 789999999999999999999999999996 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhh
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 314 (365)
.+|+++++++|++..++.+++.++..+|+..++
T Consensus 251 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 251 ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-19 Score=165.29 Aligned_cols=203 Identities=14% Similarity=0.077 Sum_probs=147.5
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHh------CCC
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIER------NPE 156 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~------~p~ 156 (365)
....+++.+|.++. ..|++++|+.+|++++...|. .+...|++++|+.+|++++.+ .|.
T Consensus 7 ~~~~~l~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLC-KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45667889999995 999999999999999998764 345569999999999999887 455
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCC-----
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGR----- 225 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~----- 225 (365)
...++..+|.++...|+ +++|+.+|++++.+.|.. ..++.++|.++.. .|+
T Consensus 86 ~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~ 147 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGN--------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCP 147 (406)
T ss_dssp HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC--
T ss_pred HHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCccccc
Confidence 67899999999999999 999999999999987653 5689999999999 999
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH------------------
Q 017806 226 ---------------TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE------------------ 272 (365)
Q Consensus 226 ---------------~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~------------------ 272 (365)
+++|+..+++++..+.+. ...+....++.++|.++...|+++.|..
T Consensus 148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 666665544433332221 1133345677777777777777633332
Q ss_pred ------------hhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCcC
Q 017806 273 ------------KQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTV 319 (365)
Q Consensus 273 ------------~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~~ 319 (365)
..|++++|+.+|++++.+.+.. ..++.++|.++...|+..++...+.
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3344566666666666665444 5566666666666666655554443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=154.66 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=142.1
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhcc--------Chh----------hhhhhhhHHHHHHHHHHHHHh--
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGV--------DEE----------GRSRQRILTFAAKRYANAIER-- 153 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~--------~~~----------~~~~~~~~~~A~~~~~~al~~-- 153 (365)
.+|....+++.+|.++. ..|++++|+.+|++++.+ .+. .+...|++++|+.+|++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYA-SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45677889999999995 999999999999999985 332 355669999999999999988
Q ss_pred ------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Q 017806 154 ------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISDR 219 (365)
Q Consensus 154 ------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~ 219 (365)
+|....++..+|.++...|+ +++|+.+|++++++. |....++.++|.++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~- 165 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGK--------------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN- 165 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-
Confidence 46678899999999999999 999999999999884 5567889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.|++++|+..|++++..+.+.... +|....++.++|.++...|++ ++|+.+|++++.+
T Consensus 166 ---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~ 224 (311)
T 3nf1_A 166 ---QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF----------KQAETLYKEILTR 224 (311)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHH
Confidence 999999996666665554432211 566778999999999999996 9999999999975
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=153.08 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=133.8
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCCC------H
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPED------Y 158 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~~------~ 158 (365)
.+...|.++ ...|++++|+..|.+++.+.+. .+...|++++|+.+|++++++.|.. .
T Consensus 39 ~~~~a~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 39 LCVQAATIY-RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHH-HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345557778 5899999999999999987421 3455699999999999999998754 5
Q ss_pred HHHHHHHHHHHHh-cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 159 DALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 159 ~~~~~lg~~~~~~-~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.++.++|.+|... |+ +++|+.+|++++++.|.+ ..++.++|.++.. +|++++|+
T Consensus 118 ~~~~~lg~~~~~~lg~--------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~- 178 (292)
T 1qqe_A 118 NFKFELGEILENDLHD--------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEAS- 178 (292)
T ss_dssp HHHHHHHHHHHHTTCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred HHHHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHH-
Confidence 6899999999996 99 999999999999998754 5789999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQ-------ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
..|++++++.|++.. +++++|.++..+|++ ++|+.+|++++.++|++...
T Consensus 179 ------~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 179 ------DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA----------VAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp ------HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHGGGCC-------
T ss_pred ------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCCCc
Confidence 779999998887643 689999999999996 99999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-19 Score=159.33 Aligned_cols=199 Identities=15% Similarity=0.079 Sum_probs=141.7
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------------hhhhhhhHHHHHHHHHHHHHh------CCCCH
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------GRSRQRILTFAAKRYANAIER------NPEDY 158 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~A~~~~~~al~~------~p~~~ 158 (365)
...++..|..+. ..|++++|+.+|++++...+. .+...|++++|+.+|++++.+ .|...
T Consensus 5 ~~~l~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLC-KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHH-HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 456788899994 999999999999999998765 245569999999999999987 45567
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCC-------
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGR------- 225 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~------- 225 (365)
.++..+|.++...|+ +++|+.+|++++++.+.. ..++..+|.++.. .|+
T Consensus 84 ~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~ 145 (338)
T 3ro2_A 84 KASGNLGNTLKVLGN--------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGP 145 (338)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSC
T ss_pred HHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchh
Confidence 899999999999999 999999999999986543 4589999999999 999
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH--------------------
Q 017806 226 -------------TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE-------------------- 272 (365)
Q Consensus 226 -------------~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~-------------------- 272 (365)
+++|+..+++++..+... ...+....++.++|.++...|+++.|..
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 666665544443333221 1123345678888888888888633322
Q ss_pred ----------hhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcC
Q 017806 273 ----------KQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 273 ----------~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
..|++++|+.+|++++.+.+.. ..++.++|.++...|+..++...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2344455555555555554333 44555555555555555544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=138.87 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+-.+-..|++++.++|+++.+++++|.++.. .|++++|+ ..|++++.++|+++.+|+++|.+|..+|++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~----~g~~~eA~-------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYN----KGRIEEAE-------VFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHccH
Confidence 5556667888899999999999999999999 99999999 889999999999999999999999999996
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccH
Q 017806 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 347 (365)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 347 (365)
++|+.+|++++.++|+++.+|+++|.++..+|+. ..|..+|.++..+.|+.
T Consensus 87 ----------~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~-------------------~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 87 ----------QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP-------------------LKAKECFELVIQHSNDE 137 (151)
T ss_dssp ----------HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHCCCH
T ss_pred ----------HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-------------------HHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999966 45667778888888888
Q ss_pred HHHHHHHHhhh
Q 017806 348 SVYSSALRLVR 358 (365)
Q Consensus 348 ~~~~~al~~~~ 358 (365)
+...++-.++.
T Consensus 138 ~~~~~A~~ll~ 148 (151)
T 3gyz_A 138 KLKIKAQSYLD 148 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666654443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=142.91 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=145.7
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------------hhhhhhhHHHHHHHHHHHHHhCCCCHH---HH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------------GRSRQRILTFAAKRYANAIERNPEDYD---AL 161 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 161 (365)
.+.+++.+|..++ ..|++++|+..|++++...|. +++..|++++|+..|+++++.+|++.. ++
T Consensus 3 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKL-QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 4678899999995 999999999999999987764 356679999999999999999999864 89
Q ss_pred HHHHHHHHHhcCccc----cCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVS----LDSTSPSKDALLEEACKKYDEATRLCPTLHDAF-----------------YNWAIAISDRA 220 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~----a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~ 220 (365)
+.+|.++..++...- ..+......|++++|+..|+++++..|++..++ ..+|.++..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-- 159 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-- 159 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999987642100 012222335679999999999999999987554 578888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 221 ~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
.|++.+|+ ..|+++++..|+++ .+++.+|.++.++|++ ++|+..|++++...|++.
T Consensus 160 --~~~~~~A~-------~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~----------~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 160 --RGAWVAVV-------NRVEGMLRDYPDTQATRDALPLMENAYRQMQMN----------AQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HTCHHHHH-------HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHCCSCCC
T ss_pred --cCcHHHHH-------HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhCCCch
Confidence 99999999 78999999999986 7899999999999996 999999999998888753
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=135.75 Aligned_cols=131 Identities=15% Similarity=0.053 Sum_probs=118.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Q 017806 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (365)
Q Consensus 145 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g 224 (365)
..|++++.++|++..+++.+|.++...|+ +++|+..|++++.++|+++.+|+++|.++.. .|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g 66 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK--------------WDDAQKIFQALCMLDHYDARYFLGLGACRQS----LG 66 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHcc--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----Hh
Confidence 46788889999999999999999999999 9999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
++++|+ .+|++++.++|+++.+++++|.+|..+|++ ++|+.+|++++.++|+++........+
T Consensus 67 ~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 67 LYEQAL-------QSYSYGALMDINEPRFPFHAAECHLQLGDL----------DGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CHHHHH-------HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred hHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999 889999999999999999999999999996 999999999999999988776666666
Q ss_pred HHHhhh
Q 017806 305 LYGLAE 310 (365)
Q Consensus 305 ~~~~g~ 310 (365)
...++.
T Consensus 130 ~~~l~~ 135 (142)
T 2xcb_A 130 GAMLEA 135 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=160.73 Aligned_cols=136 Identities=17% Similarity=0.036 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
|++++|+..|+++++.+|++..+++++|.++...|+ +++|+..|+++++++|++..+++++|.++.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD--------------TTAGEMAVQRGLALHPGHPEAVARLGRVRW 68 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHTTSTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666 666666666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
. .|++++|+ ..|+++++++|+++.+++++|.+|..+|++ ++|+..|+++++++|++..+
T Consensus 69 ~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~ 127 (568)
T 2vsy_A 69 T----QQRHAEAA-------VLLQQASDAAPEHPGIALWLGHALEDAGQA----------EAAAAAYTRAHQLLPEEPYI 127 (568)
T ss_dssp H----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHH
T ss_pred H----CCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHH
Confidence 6 66666666 555556666666666666666666666664 66666666666666666666
Q ss_pred HHHHHHHHHHh
Q 017806 298 IYNLGTVLYGL 308 (365)
Q Consensus 298 ~~~lg~~~~~~ 308 (365)
+.++|.++..+
T Consensus 128 ~~~l~~~~~~~ 138 (568)
T 2vsy_A 128 TAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 66666666665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-17 Score=145.83 Aligned_cols=214 Identities=7% Similarity=-0.059 Sum_probs=147.3
Q ss_pred hccCCCchHHHHhcCCChhHhhh--cHHHHHHHHHHhhccChhh----------h----hhh---hhHHHHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAE--QNNAAMELINSVTGVDEEG----------R----SRQ---RILTFAAKRYANAIE 152 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g--~~~~A~~~~~~al~~~~~~----------~----~~~---~~~~~A~~~~~~al~ 152 (365)
+..+|++..+|+.+|.++ ...| ++++++.++..++..+|.. . ... +++++++.++.++++
T Consensus 60 L~~nP~~~taWn~R~~~L-~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 60 INELASHYTIWIYRFNIL-KNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHCTTCHHHHHHHHHHH-HTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHH-HHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 678888899999999888 4777 7777777777777777661 1 112 466777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLE--EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
.+|.+..+|++++.++..++. ++ +++++++++++++|.|..+|..++.++.. .|+.. -.
T Consensus 139 ~~pkny~aW~~R~~vl~~l~~--------------~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~----l~~~~-~~ 199 (306)
T 3dra_A 139 SDPKNHHVWSYRKWLVDTFDL--------------HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS----KKHLA-TD 199 (306)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC--------------TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS----SGGGC-CH
T ss_pred hCCCCHHHHHHHHHHHHHhcc--------------cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccccc-hh
Confidence 777777777777777777776 66 77777777777777777777777777766 65510 01
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Q 017806 231 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ---FDFHRAIYNLGTVLYG 307 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~ 307 (365)
..++.++..+.+++..+|++..+|++++.++...|+. ++....++.+++.++ |.++.++..++.++..
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS---------ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC---------GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC---------hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 1233333667777777777777777777777777775 344555666666665 6777777777777775
Q ss_pred hhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHh-cCccHHHHHHH
Q 017806 308 LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA-LKPSYSVYSSA 353 (365)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~-~~~~~~~~~~a 353 (365)
.|+. ..|..++..+.. ++|-...|..-
T Consensus 271 ~~~~-------------------~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 271 QKKY-------------------NESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp TTCH-------------------HHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cCCH-------------------HHHHHHHHHHHhccChHHHHHHHH
Confidence 5533 445566677665 78887777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=136.56 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHHHhcCC
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHD-----AFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~~~~~g~ 225 (365)
...+.++|..++..|+ |++|+.+|+++|+++|+ +.. +|+++|.++.. +|+
T Consensus 11 a~~~~~~G~~l~~~g~--------------~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr 72 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGE--------------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRS 72 (159)
T ss_dssp HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCC
Confidence 5568999999999999 99999999999999999 544 99999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQAL----NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~----~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (365)
|++|+..|++|+..|.++++++|+++.+| +++|.++..+|++ ++|+.+|+++++++|++..+...+
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~----------eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------AEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH----------HHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999999999999999999 9999999999996 999999999999999998777777
Q ss_pred HHHHHHhh
Q 017806 302 GTVLYGLA 309 (365)
Q Consensus 302 g~~~~~~g 309 (365)
..+.....
T Consensus 143 ~~~~~~~~ 150 (159)
T 2hr2_A 143 ERMMEVAI 150 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=141.74 Aligned_cols=147 Identities=10% Similarity=-0.026 Sum_probs=125.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|+++++.+|+++.+++.+|.++...|+ +++|+.+|++++.++| ++..+..++.
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------------~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--------------FELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--------------HHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 456788999999999999999999999999999999999 9999999999999999 8887776665
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
+.... .+...+|+ ..|+++++.+|+++.+++++|.++...|++ ++|+..|+++++.+|++
T Consensus 82 ~~~~~---~~~~~~a~-------~~~~~al~~~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 82 LELHQ---QAAESPEL-------KRLEQELAANPDNFELACELAVQYNQVGRD----------EEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHH---HHTSCHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTT
T ss_pred HHHHh---hcccchHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCccc
Confidence 54320 23333455 789999999999999999999999999996 99999999999999876
Q ss_pred --HHHHHHHHHHHHHhhhhhhhhc
Q 017806 295 --HRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 295 --~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
+.++.++|.++..+|+..++..
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHH
Confidence 6699999999999997764433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=140.56 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=179.7
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------hhhh----hhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------GRSR----QRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
+|+++.+++.+|.++. ..|++++|+.+|++++..... .+.. .+++++|+.+|+++++.+ ++.+++
T Consensus 2 ~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSY-KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp ---CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCCChHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 5788999999999995 999999999999999985532 3455 789999999999999985 899999
Q ss_pred HHHHHHHH----hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 163 NWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 163 ~lg~~~~~----~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
++|.++.. .++ +++|+.+|+++++.+ ++.+++++|.++.......+++++|+ .
T Consensus 79 ~lg~~~~~g~~~~~~--------------~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~-------~ 135 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQN--------------TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAV-------E 135 (273)
T ss_dssp HHHHHHHHTSSSCCC--------------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH-------H
T ss_pred HHHHHHhCCCCcccC--------------HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHH-------H
Confidence 99999999 999 999999999999984 89999999999986111158999999 6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhh
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG----LAE 310 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 310 (365)
+|+++++.+ ++.+++++|.+|.. .+++ ++|+.+|+++++. +++.+++++|.++.. .++
T Consensus 136 ~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~----------~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 136 YFTKACDLN--DGDGCTILGSLYDAGRGTPKDL----------KKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc
Confidence 788888765 68999999999999 8886 9999999999988 468999999999999 999
Q ss_pred hhhhhcCcCCCCCCCcchHHHHHHHHHHH----HHhcCccHHHHHHHHHh
Q 017806 311 DTLRTGGTVNPREVSPNELYSQSAIYIAA----AHALKPSYSVYSSALRL 356 (365)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~----a~~~~~~~~~~~~al~~ 356 (365)
..++...+..+....+...+......+.. ....+.+...+..++.+
T Consensus 202 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 202 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 98888777666666555444444444444 44444455555555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=161.15 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=126.3
Q ss_pred hhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCc
Q 017806 113 AEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 182 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~ 182 (365)
.|++++|+..|++++..+|. .+...|++++|+.+|+++++++|++..+++++|.++..+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------- 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------- 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC---------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---------
Confidence 46777888888888777765 34556899999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
+++|+.+|+++++++|++..+++++|.++.. .|++++|+ ..|+++++++|++..++.++|.++.
T Consensus 73 -----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 73 -----HAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAA-------AAYTRAHQLLPEEPYITAQLLNWRR 136 (568)
T ss_dssp -----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 7899999999999999999999999
Q ss_pred Hh---cCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 263 EL---SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 263 ~~---~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
.+ |++ ++|+..|+++++.+|++...+..++
T Consensus 137 ~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 137 RLCDWRAL----------DVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HTTCCTTH----------HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HhhccccH----------HHHHHHHHHHHhcCCcccChHHHhC
Confidence 99 775 9999999999999998876665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-17 Score=125.89 Aligned_cols=118 Identities=16% Similarity=0.025 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
|..+..|+.+|.++...|+ +++|+.+|+++++++|+++.+|+++|.++.. .|++++|+
T Consensus 1 p~~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~---- 58 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSD--------------WPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAI---- 58 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred CchHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHH----
Confidence 3457789999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYG 307 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~ 307 (365)
..|+++++++|+++.+|+++|.++..+|++ ++|+..|++++.++ |++..++..++.+...
T Consensus 59 ---~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 59 ---ADCNKAIEKDPNFVRAYIRKATAQIAVKEY----------ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp ---HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCCcHHHHHHHHHHHHHHhCH----------HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 889999999999999999999999999996 99999999999999 9999999999888754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=148.21 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=135.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|+++++.+|++..+++.+|.++...|+ +++|+..|++++..+|+....+...+.
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--------------SEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--------------HHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--------------HHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 456889999999999999999999999999999999999 999999999999999988888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
.+.. .++.++|+ ..|++++..+|+++.+++++|.+|...|++ ++|+..|+++++.+|++
T Consensus 194 ~l~~----~~~~~~a~-------~~l~~al~~~P~~~~~~~~la~~l~~~g~~----------~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 194 ELLX----QAADTPEI-------QQLQQQVAENPEDAALATQLALQLHQVGRN----------EEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHH----HHTSCHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTG
T ss_pred HHHh----hcccCccH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhccccc
Confidence 8888 88888888 789999999999999999999999999996 99999999999999999
Q ss_pred --HHHHHHHHHHHHHhhhhhhhh
Q 017806 295 --HRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 295 --~~~~~~lg~~~~~~g~~~~a~ 315 (365)
..++.++|.++..+|+...+.
T Consensus 253 ~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTTCHHH
T ss_pred ccchHHHHHHHHHHHcCCCCcHH
Confidence 899999999999999765433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=156.39 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=173.5
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC-------C
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE-------D 157 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~-------~ 157 (365)
.++.+|.++. ..|++++|+.+|++++.+... .+...|++++|+.+|.+++++.+. .
T Consensus 105 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 105 FNFFRGMYEL-DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 3455899995 999999999999999987211 355669999999999999998543 3
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..++.++|.++..+|+ +++|+.+|++++++.+.. ..+++++|.++.. +|++++|+.
T Consensus 184 ~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~ 245 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQ--------------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 5689999999999999 999999999999985543 3589999999999 999999996
Q ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-----FDFHRAIYNLGTVL 305 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~ 305 (365)
.|++|+..++.. .+ |..+.+++++|.++..+|++ ++|+.+|++++.+. |.....+..+|.++
T Consensus 246 ~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 246 YFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKI----------DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 655555544431 35 77899999999999999996 99999999999983 44444567799999
Q ss_pred HHhhh---hhhhhcCcCCCCCC-CcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 306 YGLAE---DTLRTGGTVNPREV-SPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 306 ~~~g~---~~~a~~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
...|+ ...+.......... .....+...+.++...+..+.+...+..++.+.+.+
T Consensus 314 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred hCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 88886 33333332222110 111234555566666677777777777777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=136.22 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=127.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH---
Q 017806 134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--- 207 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 207 (365)
++..|++++|+..|+++++.+|.+ ..+++.+|.++..+|+ +++|+..|+++++++|++..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCcHHH
Confidence 466799999999999999999986 4789999999999999 99999999999999999764
Q ss_pred HHHHHHHHHHHHH--------------HhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HH
Q 017806 208 AFYNWAIAISDRA--------------KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NN 256 (365)
Q Consensus 208 ~~~~lg~~~~~~~--------------~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~ 256 (365)
+++.+|.++.... ...|++++|+ ..|+++++.+|++..++ ..
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-------~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF-------SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHH-------HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH-------HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999987600 0024555555 88999999999987655 57
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhhhhhh
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~a 314 (365)
+|.+|...|++ ++|+..|+++++..|+++ .+++.+|.++..+|+...+
T Consensus 153 ~a~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 153 VAEYYTERGAW----------VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHTCH----------HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCcH----------HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 78888888885 999999999999999986 6899999999999977533
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=129.49 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=111.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
++.++..++.+|.++...|+ |++|+.+|+++++++|+++.+|+++|.++.. .|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~--- 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE--------------YSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAA--- 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred hhhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHH---
Confidence 35567889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
.+|+++++++|+++.+|+++|.+|..+|++ ++|+.+|+++++++|++..++++++.+.....
T Consensus 66 ----~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 66 ----EDAELATVVDPKYSKAWSRLGLARFDMADY----------KGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp ----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 889999999999999999999999999996 99999999999999999887777766655444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-17 Score=133.43 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=119.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+...|++++|+..|+++++.+|.+..+|+.+|.++...|+ +++|+.+|++++.++|+++.++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~la 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--------------YSNSLLAYRQALQLRGENAELYAALA 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3556889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HH-HHHHHHhcCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 214 IA-ISDRAKMRGRT--KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 214 ~~-~~~~~~~~g~~--~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+ +.. .|++ ++|+ ..|+++++.+|+++.+++++|.++...|++ ++|+..|++++.+
T Consensus 86 ~~l~~~----~~~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~ 144 (177)
T 2e2e_A 86 TVLYYQ----ASQHMTAQTR-------AMIDKALALDSNEITALMLLASDAFMQANY----------AQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHH----TTTCCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHT
T ss_pred HHHHHh----cCCcchHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhh
Confidence 99 778 9998 9999 779999999999999999999999999996 9999999999999
Q ss_pred CCCCHHHHHHH
Q 017806 291 QFDFHRAIYNL 301 (365)
Q Consensus 291 ~p~~~~~~~~l 301 (365)
+|++......+
T Consensus 145 ~p~~~~~~~~~ 155 (177)
T 2e2e_A 145 NSPRINRTQLV 155 (177)
T ss_dssp CCTTSCHHHHH
T ss_pred CCCCccHHHHH
Confidence 99886544333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=139.14 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=116.0
Q ss_pred hhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----
Q 017806 134 RSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---- 201 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---- 201 (365)
+...|++++|+.+|++++++ +|....++.++|.++...|+ +++|+.+|++++.+
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------------YKEAEPLCKRALEIREKV 118 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHHHH
Confidence 34457777777777777766 36667899999999999999 99999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCcchhHHhhhH
Q 017806 202 ----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWGLALQELSAIVPAREKQTI 276 (365)
Q Consensus 202 ----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 276 (365)
+|....++.++|.++.. .|++++|+..|++++..+.+.... +|....++.++|.++..+|++
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------- 185 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY--------- 185 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH---------
T ss_pred cCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH---------
Confidence 46778899999999999 999999997766666655443221 566678999999999999996
Q ss_pred HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHh
Q 017806 277 VRTAISKFRAAIQL---------QFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 277 ~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~ 308 (365)
++|+.+|++++.+ .+.....+..++.+....
T Consensus 186 -~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (283)
T 3edt_B 186 -QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225 (283)
T ss_dssp -HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC
Confidence 9999999999987 344445555555554433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-15 Score=135.84 Aligned_cols=227 Identities=14% Similarity=0.069 Sum_probs=176.8
Q ss_pred hccCCCchHHHHhcCCChhHhhhc----------HHHHHHHHHHhhccChhhh----------hhhh--hHHHHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQ----------NNAAMELINSVTGVDEEGR----------SRQR--ILTFAAKRYAN 149 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~----------~~~A~~~~~~al~~~~~~~----------~~~~--~~~~A~~~~~~ 149 (365)
+..+|++..+|+.++.++ ...+. +++++.++..++..+|..+ ...+ .+++++.++.+
T Consensus 57 L~~nP~~ytaWn~Rr~iL-~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 135 (331)
T 3dss_A 57 LGANPDFATLWNCRREVL-QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 135 (331)
T ss_dssp HTTCTTCHHHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHH-HHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 789999999999999999 57776 6899999999999998831 1224 58999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 150 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 150 al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
+++.+|.+..+|.+++.+....|. .++++++++.++++.+|.|..+|++++.++.. .+....+
T Consensus 136 ~l~~dprNy~AW~~R~~vl~~l~~-------------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~----l~~~~~~ 198 (331)
T 3dss_A 136 FLEADERNFHCWDYRRFVAAQAAV-------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQ----LHPQPDS 198 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----HSCCC--
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCc-------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hhhcccc
Confidence 999999999999999999999987 04899999999999999999999999999988 6321110
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 230 -------EELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (365)
Q Consensus 230 -------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (365)
...++.++.++.+++..+|++..+|+.+..++... |.........+.++++++++.+++++.|++.. ..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w--~l~ 276 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW--CLL 276 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH--HHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch--HHH
Confidence 13456666999999999999999998665555544 32211233456789999999999999999954 444
Q ss_pred HHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 302 GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 302 g~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
+.++...+-. +...+.....++.++..+||-...+..
T Consensus 277 ~~~~~~~~~~--------------~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 277 TIILLMRALD--------------PLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHHHHHHC--------------TTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHhhc--------------ccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 4444432211 111346788899999999998765543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=148.61 Aligned_cols=198 Identities=15% Similarity=0.080 Sum_probs=160.1
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhh-------------------
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRI------------------- 139 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~------------------- 139 (365)
.+....++..+|.++. ..|++++|+.+|.+++.+.+. .+...|+
T Consensus 83 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 4556788999999994 999999999999999988654 3455689
Q ss_pred -HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH------
Q 017806 140 -LTFAAKRYANAIER------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH------ 206 (365)
Q Consensus 140 -~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~------ 206 (365)
+++|+.+|.+++.+ .|....++.++|.++...|+ +++|+.+|++++++.+...
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB--------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999987 34456789999999999999 9999999999999866543
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++.++|.++.. .|++++|+..+++++...... ...+....++.++|.++...|++ ++|+.+|++
T Consensus 228 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~ 292 (406)
T 3sf4_A 228 RAYSNLGNAYIF----LGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLK 292 (406)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcH----------HHHHHHHHH
Confidence 389999999999 999999995555554443321 00011277999999999999996 999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 287 AIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 287 al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
++.+.+.. ..++.++|.++...|+...+...+..++
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99986544 6789999999999998877766544333
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-17 Score=152.32 Aligned_cols=221 Identities=15% Similarity=0.066 Sum_probs=140.5
Q ss_pred ccCCCch----HHHHhcCCChhHhhhcHHHHHHHHHHhhccC------hh----------hhhhhhhHHHHHHHHHHHHH
Q 017806 93 EGEDSVT----DASFSQGNTPHQLAEQNNAAMELINSVTGVD------EE----------GRSRQRILTFAAKRYANAIE 152 (365)
Q Consensus 93 ~~~~~~~----~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~------~~----------~~~~~~~~~~A~~~~~~al~ 152 (365)
...|+++ .+++.+|.++. ..|++++|+.+|++++.+. +. .+...|++++|+.+|+++++
T Consensus 76 ~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 76 QAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455554 46777777774 7777777777777777662 21 23444666666666666666
Q ss_pred h------CCCCHHHHHHHHHHHHHhcC-----------------cccc--------------------------CCCCch
Q 017806 153 R------NPEDYDALYNWALVLQESAD-----------------NVSL--------------------------DSTSPS 183 (365)
Q Consensus 153 ~------~p~~~~~~~~lg~~~~~~~~-----------------~~~a--------------------------~~~~~~ 183 (365)
+ .|....++.++|.++...|+ +..+ .+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 234 (411)
T 4a1s_A 155 LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY 234 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5 34445566666666666655 3222 111112
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 184 KDALLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 184 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
..|++++|+.+|++++.+.+... .++.++|.++.. .|++++|+..|++++...... ...+....++.++
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 309 (411)
T 4a1s_A 235 LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVEL-GEREVEAQSCYSL 309 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 22447777777777777655432 267777777777 777777775544444433321 0001126788889
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHH
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 331 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 331 (365)
|.++...|++ ++|+.+|++++.+.+.. ..++..+|.++..+|+..
T Consensus 310 a~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~------------------- 360 (411)
T 4a1s_A 310 GNTYTLLHEF----------NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE------------------- 360 (411)
T ss_dssp HHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-------------------
T ss_pred HHHHHHcCCH----------HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH-------------------
Confidence 9999988885 99999999999885432 568899999999999664
Q ss_pred HHHHHHHHHHhcCccHH
Q 017806 332 QSAIYIAAAHALKPSYS 348 (365)
Q Consensus 332 ~a~~~~~~a~~~~~~~~ 348 (365)
.+..++.++..+.+...
T Consensus 361 ~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 361 RALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 45556666666655543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-15 Score=132.82 Aligned_cols=190 Identities=9% Similarity=0.005 Sum_probs=157.9
Q ss_pred hhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CccccCCCCchhhhHHHH
Q 017806 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA--DNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~a~~~~~~~~~~~~~ 190 (365)
..+|.+++.++...+... ...++|+.++.++|.++|++..+|+.+|.++..++ + +++
T Consensus 29 ~~~y~~~~~~~~a~~~~~-------e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~--------------~~e 87 (306)
T 3dra_A 29 DEDYKQIMGLLLALMKAE-------EYSERALHITELGINELASHYTIWIYRFNILKNLPNRN--------------LYD 87 (306)
T ss_dssp CHHHHHHHHHHHHHHHTT-------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSC--------------HHH
T ss_pred CHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccccc--------------HHH
Confidence 455666777776554432 12368999999999999999999999999999999 7 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR---GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~---g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++.++.+++.++|++..+|+.++.++....... +++++++ ..+.++++.+|++..+|++++.++..++.+
T Consensus 88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL-------~~~~~~l~~~pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF-------DILEAMLSSDPKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999993211116 7888888 889999999999999999999999999986
Q ss_pred chhHHhhhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCc
Q 017806 268 VPAREKQTIVR--TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (365)
Q Consensus 268 ~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 345 (365)
+ ++++++.++++.+|.|..+|++.+.++..++... ....+.....++..+...+|
T Consensus 161 ----------~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~-------------~~~~~~eEl~~~~~aI~~~p 217 (306)
T 3dra_A 161 ----------NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA-------------TDNTIDEELNYVKDKIVKCP 217 (306)
T ss_dssp ----------TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-------------CHHHHHHHHHHHHHHHHHCS
T ss_pred ----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-------------hhhhHHHHHHHHHHHHHhCC
Confidence 7 9999999999999999999999999999887521 22346677777788888888
Q ss_pred cHHHHHHH
Q 017806 346 SYSVYSSA 353 (365)
Q Consensus 346 ~~~~~~~a 353 (365)
.+......
T Consensus 218 ~n~SaW~y 225 (306)
T 3dra_A 218 QNPSTWNY 225 (306)
T ss_dssp SCHHHHHH
T ss_pred CCccHHHH
Confidence 76654433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=121.29 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=115.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.|....+++.+|.++...|+ +++|+.+|++++.++|++..+++++|.++.. .|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~--- 70 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD--------------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLAL--- 70 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC--------------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHH---
T ss_pred CcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHH---
Confidence 46678899999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
..|+++++.+|+++.+++++|.++...|++ ++|+.+|++++.++|++..++..++.++...|
T Consensus 71 ----~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 71 ----KDCEECIQLEPTFIKGYTRKAAALEAMKDY----------TKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp ----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHhCCCchHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 779999999999999999999999999996 99999999999999999999999999998876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=118.79 Aligned_cols=124 Identities=24% Similarity=0.245 Sum_probs=117.0
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.+|.+..+++.+|.++...|+ +++|+..|++++.++|++..++..+|.++.. .|++++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-- 66 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVEN--------------FEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAV-- 66 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred cchhhhHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHH--
Confidence 345677889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
..+++++..+|+++.+++.+|.++...|++ ++|+.+|++++.++|++..++..+|.++..+|+.
T Consensus 67 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 67 -----QDCERAICIDPAYSKAYGRMGLALSSLNKH----------VEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHhcCccCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 778999999999999999999999999996 9999999999999999999999999999998854
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=146.76 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=127.3
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPED---------------YDALYNWAL 166 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 166 (365)
.++++++|+..|++++...+. .++..|++++|+.+|+++++++|.+ ..+|+++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777665554 4567799999999999999999998 699999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++..+|+ +++|+.+|+++++++|+++.+++++|.++.. +|++++|+ ..|++++++
T Consensus 205 ~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~~al~l 259 (336)
T 1p5q_A 205 CHLKLQA--------------FSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELAR-------ADFQKVLQL 259 (336)
T ss_dssp HHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHH
T ss_pred HHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHH
Confidence 9999999 9999999999999999999999999999999 99999999 889999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH-HHHHHHHHHh
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTA-ISKFRAAIQL 290 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 290 (365)
+|++..++.++|.++..+|++ ++| ...|++.+..
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQ----------LAREKKLYANMFER 294 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 999999999999999999996 777 5566666643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-17 Score=156.59 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=131.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-----------
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------- 205 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 205 (365)
.+++++|+..|..++..+|....+++++|.+++..|+ |++|+.+|+++++++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 312 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK--------------YMQAVIQYGKIVSWLEMEYGLSEKESKAS 312 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHhcccccCChHHHHHH
Confidence 3677889999999999999999999999999999999 999999999999999998
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 206 ----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
..+|+++|.++.. +|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+
T Consensus 313 ~~~~~~~~~nla~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~~g~a~~~~g~~----------~~A~ 371 (457)
T 1kt0_A 313 ESFLLAAFLNLAMCYLK----LREYTKAV-------ECCDKALGLDSANEKGLYRRGEAQLLMNEF----------ESAK 371 (457)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHccCH----------HHHH
Confidence 7999999999999 99999999 889999999999999999999999999996 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
.+|+++++++|++..++.+++.++..+++..++.
T Consensus 372 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 372 GDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999776543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=133.51 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH----------
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---------- 206 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------- 206 (365)
.|+++++.+.+.......+.....+..+|.+++..|+ |++|+..|++++.+.|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNE--------------INEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3455555555555555555667789999999999999 9999999999999999887
Q ss_pred ------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 207 ------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 207 ------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
.+++++|.++.. .|++++|+ .+|+++++++|+++.+++++|.+|..+|++ ++|
T Consensus 83 ~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A 141 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNK----NKDYPKAI-------DHASKVLKIDKNNVKALYKLGVANMYFGFL----------EEA 141 (198)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTCH----------HHH
T ss_pred HHHHHHHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHcccH----------HHH
Confidence 899999999999 99999999 779999999999999999999999999996 999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 281 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
+.+|++++.++|++..++..++.++..+++..++.
T Consensus 142 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 142 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998776544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=142.35 Aligned_cols=171 Identities=19% Similarity=0.167 Sum_probs=145.8
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC--------hh----------hhhhhhhHHHHHHHHHHHHHhC-
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD--------EE----------GRSRQRILTFAAKRYANAIERN- 154 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--------~~----------~~~~~~~~~~A~~~~~~al~~~- 154 (365)
..+....++..+|.++. ..|++++|+.+|++++... +. .+...|++++|+.+|++++++.
T Consensus 64 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 64 DHPDVATMLNILALVYR-DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp SSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 46777889999999994 9999999999999999873 22 3455699999999999999984
Q ss_pred -------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Q 017806 155 -------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 155 -------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~ 219 (365)
|....++.++|.++...|+ +++|+.+|++++.+ .|....++..+|.++..
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~- 207 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGK--------------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK- 207 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-
Confidence 6667889999999999999 99999999999998 67778899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHH------------------------------------------HHHHHhcCCCCHHHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKN------------------------------------------YEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~------------------------------------------~~~al~~~p~~~~~~~~l 257 (365)
.|++++|+..+++++.. +.+++..+|..+.++.++
T Consensus 208 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 284 (311)
T 3nf1_A 208 ---QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNL 284 (311)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 99999999888888764 333344567788999999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
|.+|..+|++ ++|+.+|++++++.|+
T Consensus 285 a~~~~~~g~~----------~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 285 GALYRRQGKF----------EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHTCH----------HHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCCH----------HHHHHHHHHHHHHhhc
Confidence 9999999996 9999999999998875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=119.37 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
.+.++.++|.+++..|+ |++|+.+|+++++++|+++.+|+++|.++.. +|++++|+
T Consensus 7 ~A~a~~~lG~~~~~~~~--------------~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~------ 62 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKD--------------FEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECV------ 62 (127)
T ss_dssp HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred HHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHH------
Confidence 45678999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 237 TKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 237 ~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
..|+++++++|++ +.+++++|.++..+|++ ++|+.+|++++..+|+ +.....|.
T Consensus 63 -~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~----------~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 63 -QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL----------SLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp -HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred -HHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 6677777777665 35788888888888885 9999999999999885 55544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-16 Score=123.77 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=100.6
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK---EAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~---~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
..+.++|++|+..|+++++++|+++++|+++|.++.. .++++ +|++.+++|+..|+++++++|+++.+|+++|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456779999999999999999999999999999999 77664 6677888899999999999999999999999
Q ss_pred HHHHHhcCcchh-HHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 259 LALQELSAIVPA-REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
.+|..+|.+.+. ....|+|++|+.+|++|++++|++...+..+..+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999998742111 1234667999999999999999998776666544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=146.46 Aligned_cols=229 Identities=11% Similarity=0.040 Sum_probs=170.9
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC-------C
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE-------D 157 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~-------~ 157 (365)
.++.+|..+. ..|++++|+.+|++++.+... .+...|++++|+.++.+++++.+. .
T Consensus 103 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEF-DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 5778899995 999999999999999987432 355669999999999999997543 2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..++.++|.++..+|+ +++|+.+|++++++.+. ...+++++|.++.. +|++++|+.
T Consensus 182 ~~~~~~lg~~y~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~ 243 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKH--------------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 5678999999999999 99999999999997431 35689999999999 999999997
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-----FDFHRAIYNLGTVLY 306 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~ 306 (365)
.|++|+..++.. .+|..+.+++++|.++..+|++ ++|+.+|++++.+. +.....+..++.++.
T Consensus 244 ~~~~al~~~~~~--~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 244 HFQKAAKVSREK--VPDLLPKVLFGLSWTLCKAGQT----------QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh--CChhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666666655443 5677799999999999999996 99999999999984 444556667777777
Q ss_pred Hhhh---hhhhhcCcCCCCC-CCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhhhhh
Q 017806 307 GLAE---DTLRTGGTVNPRE-VSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (365)
Q Consensus 307 ~~g~---~~~a~~~~~~~~~-~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~~ 360 (365)
..++ ..++......... ......+...+.++...+..+.+...+..++.+.+.+
T Consensus 312 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 6665 3333322211100 0111234445555566666666666777776665543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-15 Score=127.47 Aligned_cols=134 Identities=11% Similarity=0.104 Sum_probs=116.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|++++ +| ++.+++++|.++...|+ +++|+.+|++++.++|+++.+++++|.
T Consensus 17 ~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--------------MTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45567777777777774 33 68899999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP----------------QALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
++.. .|++++|+ ..|+++++..|++. .+++++|.++..+|++ +
T Consensus 80 ~~~~----~~~~~~A~-------~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~ 138 (213)
T 1hh8_A 80 LYYQ----TEKYDLAI-------KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW----------K 138 (213)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH----------H
T ss_pred HHHH----cccHHHHH-------HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH----------H
Confidence 9999 99999999 77899999888766 9999999999999996 9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 279 TAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+|+.+|++++.++|++.......+....
T Consensus 139 ~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 139 KAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp HHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999999987655554444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-14 Score=131.10 Aligned_cols=202 Identities=9% Similarity=0.056 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhhccChhh----------hhhhhh----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Q 017806 116 NNAAMELINSVTGVDEEG----------RSRQRI----------LTFAAKRYANAIERNPEDYDALYNWALVLQESADNV 175 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~----------~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 175 (365)
.++|+.++.+++.++|.. ....+. +++++.++..++..+|.+..+|++++.++..+++
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~-- 123 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE-- 123 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS--
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc--
Confidence 348999999999999872 111122 7899999999999999999999999999999883
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 017806 176 SLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 176 ~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~-~~~A~~~~~~A~~~~~~al~~~p~~~~~~ 254 (365)
..+++++.++.++++++|.|..+|+.++.++.. .|. +++++ ..+.++++.+|.+..+|
T Consensus 124 ----------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel-------~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 124 ----------PNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEEL-------AFTDSLITRNFSNYSSW 182 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHH-------HHHHHHHHHCSCCHHHH
T ss_pred ----------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHH-------HHHHHHHHHCCCCHHHH
Confidence 018999999999999999999999999999999 998 57777 88999999999999999
Q ss_pred HHHHHHHHHhcCcchh----HHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hhhhhhhcCcCCCCCCCcchH
Q 017806 255 NNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNEL 329 (365)
Q Consensus 255 ~~lg~~~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~a~~~~~~~~~~~~~~~ 329 (365)
++++.++..+...... ....+.++++++++.+++..+|+|..+|+.+..++... |... ......+.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~---------~~~~~~~~ 253 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE---------LSVEKSTV 253 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG---------CCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc---------cchHHHHH
Confidence 9999999998432110 01225679999999999999999999998776666554 2110 00011245
Q ss_pred HHHHHHHHHHHHhcCccHHH
Q 017806 330 YSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 330 ~~~a~~~~~~a~~~~~~~~~ 349 (365)
+.....++..+..+.|++.-
T Consensus 254 l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 254 LQSELESCKELQELEPENKW 273 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhhCcccch
Confidence 66777777777777777643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=118.45 Aligned_cols=125 Identities=17% Similarity=0.085 Sum_probs=113.8
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 152 ~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..+|.++..++.+|.++...|+ +++|+.+|++++.++|+++.+++++|.++.. .|++++|+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~- 63 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL- 63 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred CCccccHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHH-
Confidence 4568889999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-----FHRAIYNLGTVLY 306 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~ 306 (365)
..|+++++++|+++.+|+++|.++..+|++ ++|+..|++++.++|+ +..++..+..+..
T Consensus 64 ------~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 64 ------ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred ------HHHHHHHHhCchhHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999996 9999999999999988 7788888887776
Q ss_pred Hhhhh
Q 017806 307 GLAED 311 (365)
Q Consensus 307 ~~g~~ 311 (365)
.....
T Consensus 128 ~~~~~ 132 (137)
T 3q49_B 128 KRWNS 132 (137)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65533
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-15 Score=115.04 Aligned_cols=125 Identities=29% Similarity=0.358 Sum_probs=117.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|+++++.+|.+..++..+|.++...|+ +++|+..|++++...|.+..+++.+|.
T Consensus 12 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGN 77 (136)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 456788999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. .|++++|+ ..+++++..+|++..++..+|.++...|++ ++|+..|++++..+|++
T Consensus 78 ~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 78 AYYK----QGDYDEAI-------EYYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHSTTC
T ss_pred HHHH----hcCHHHHH-------HHHHHHHHhCCCChHHHHHHHHHHHHHccH----------HHHHHHHHHHHccCCCC
Confidence 9999 99999999 778889999999999999999999999996 99999999999999863
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=127.40 Aligned_cols=118 Identities=12% Similarity=0.138 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchh
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 270 (365)
+-..|++++.++|++..+++++|.++.. .|++++|+ ..|++++..+|+++.+|+++|.++..+|++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--- 71 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAH-------XVFQALCVLDHYDSRFFLGLGACRQAMGQY--- 71 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHHcCcccHHHHHHHHHHHHHHhhH---
Confidence 3457899999999999999999999999 99999999 779999999999999999999999999996
Q ss_pred HHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHH
Q 017806 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (365)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 348 (365)
++|+.+|++++.++|+++.+++++|.++..+|+.. .+..+|.++..+.|+++
T Consensus 72 -------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~-------------------~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 72 -------DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELA-------------------EAESGLFLAQELIANXP 123 (148)
T ss_dssp -------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH-------------------HHHHHHHHHHHHHTTCG
T ss_pred -------HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH-------------------HHHHHHHHHHHHCcCCC
Confidence 99999999999999999999999999999999764 45556677777666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=150.19 Aligned_cols=149 Identities=7% Similarity=0.026 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESA--DNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
+++++.++.++++.+|.+..+|++++.++..++ + ++++++++.++++++|.+..+|+.+|.++.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~--------------~~~el~~~~k~l~~d~~N~~aW~~R~~~l~ 154 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN--------------WARELELCARFLEADERNFHCWDYRRFVAA 154 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc--------------HHHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 899999999999999999999999999999999 6 799999999999999999999999999999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH----HhhhHHHHHHHHHHHHHHhCC
Q 017806 218 DRAKMRG-RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR----EKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 218 ~~~~~~g-~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~~p 292 (365)
. .| .+++++ +++.++++.+|.+..+|+++|.++..++....+. ...+.++++++++.+|+.++|
T Consensus 155 ~----l~~~~~~el-------~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 155 Q----AAVAPAEEL-------AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp H----TCCCHHHHH-------HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred H----cCCChHHHH-------HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 9 99 888888 8899999999999999999999999974431111 123668999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhh
Q 017806 293 DFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~ 313 (365)
++..+|+.++.++...++...
T Consensus 224 ~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 224 NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCSHHHHHHHHHHSCCCCCSC
T ss_pred CCccHHHHHHHHHhcCCCccc
Confidence 999999999999998886443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=119.30 Aligned_cols=105 Identities=21% Similarity=0.137 Sum_probs=98.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++|+++.+|+++|.
T Consensus 15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 15 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------------FPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 566889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHh
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------WNSPQALNNWGLALQEL 264 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~ 264 (365)
++.. +|++++|+ ..|+++++++ |++..++..++.+...+
T Consensus 81 ~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 81 AQIA----VKEYASAL-------ETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHH----HhCHHHHH-------HHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999 99999999 7788888888 99999999998887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-15 Score=112.93 Aligned_cols=122 Identities=29% Similarity=0.365 Sum_probs=112.3
Q ss_pred hCCCC-HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 153 RNPED-YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 153 ~~p~~-~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.+|.. ..+++.+|.++...|+ +++|+..|++++..+|.+..+++.+|.++.. .|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~- 63 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAI- 63 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-
T ss_pred CCccccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----hCCHHHHH-
Confidence 35655 7889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
..|++++..+|++..+++++|.++...|++ ++|+.+|++++..+|++..++.++|.++...|
T Consensus 64 ------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 64 ------EYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 778888999999999999999999999996 99999999999999999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-16 Score=140.66 Aligned_cols=188 Identities=16% Similarity=0.113 Sum_probs=151.4
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhh-------------------
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRI------------------- 139 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~------------------- 139 (365)
.+....++..+|.++. ..|++++|+.+|++++.+.+. .+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 4456788999999994 999999999999999887643 3455688
Q ss_pred -HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------H
Q 017806 140 -LTFAAKRYANAIER------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------H 206 (365)
Q Consensus 140 -~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~ 206 (365)
+++|+.+|++++.+ .+....++.++|.++...|+ +++|+.+|++++++.+.. .
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~ 223 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAER 223 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999886 34456789999999999999 999999999999886542 3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++.++|.++.. .|++++|+..+++++...... ...+....++..+|.++...|++ ++|+.+|++
T Consensus 224 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~ 288 (338)
T 3ro2_A 224 RAYSNLGNAYIF----LGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHH
Confidence 489999999999 999999996655554444331 00111277899999999999996 999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHhhhhh
Q 017806 287 AIQLQFDF------HRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 287 al~~~p~~------~~~~~~lg~~~~~~g~~~ 312 (365)
++.+.+.. ..++..+|.++...|+..
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99885532 558889999999998664
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=123.31 Aligned_cols=121 Identities=17% Similarity=0.056 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------------------CPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~ 219 (365)
+..+..+|..++..|+ |++|+.+|++++.+ +|.+..+|+++|.++..
T Consensus 11 a~~~~~~G~~~~~~~~--------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~- 75 (162)
T 3rkv_A 11 VEALRQKGNELFVQKD--------------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN- 75 (162)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 5678999999999999 99999999999999 77788999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH-HHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-RAI 298 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~ 298 (365)
+|++++|+ .+++++++++|+++.+|+++|.+|..+|++ ++|+..|++++.++|++. .+.
T Consensus 76 ---~~~~~~A~-------~~~~~al~~~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~ 135 (162)
T 3rkv_A 76 ---IGDLHEAE-------ETSSEVLKREETNEKALFRRAKARIAAWKL----------DEAEEDLKLLLRNHPAAASVVA 135 (162)
T ss_dssp ---HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCGGGHHHHH
T ss_pred ---cCcHHHHH-------HHHHHHHhcCCcchHHHHHHHHHHHHHhcH----------HHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999 889999999999999999999999999996 999999999999999999 778
Q ss_pred HHHHHHHHHhhhhhh
Q 017806 299 YNLGTVLYGLAEDTL 313 (365)
Q Consensus 299 ~~lg~~~~~~g~~~~ 313 (365)
..++.+...+.+...
T Consensus 136 ~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 136 REMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887775543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=135.95 Aligned_cols=168 Identities=12% Similarity=0.000 Sum_probs=150.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
-|.+...++.+|..+...|+ +++|+..|++++.++|+++.+++++|.++.. .|++++|+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~--- 171 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESN--------------YTDALPLLXDAWQLSNQNGEIGLLLAETLIA----LNRSEDAE--- 171 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred cCCchhhHHHHHHHHHhCCC--------------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHH----CCCHHHHH---
Confidence 48999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 313 (365)
..|++++..+|+....+...+..+...++. ++|+..|++++..+|+++.+++++|.++...|+...
T Consensus 172 ----~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~----------~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~ 237 (287)
T 3qou_A 172 ----AVLXTIPLQDQDTRYQGLVAQIELLXQAAD----------TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEE 237 (287)
T ss_dssp ----HHHTTSCGGGCSHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHhCchhhcchHHHHHHHHHHHHhhccc----------CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence 779999999998888888888889999987 899999999999999999999999999999999998
Q ss_pred hhcCcCCCCCCCcch----HHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 314 RTGGTVNPREVSPNE----LYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 314 a~~~~~~~~~~~~~~----~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
+...+..++..+|+. .+......|...+..++....|.+++..
T Consensus 238 A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 238 ALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 888777776666543 5677777778888888888888877754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=136.49 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=145.5
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC--------hh----------hhhhhhhHHHHHHHHHHHHHh--
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD--------EE----------GRSRQRILTFAAKRYANAIER-- 153 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~--------~~----------~~~~~~~~~~A~~~~~~al~~-- 153 (365)
..|..+.+++.+|.++. ..|++++|+.+|++++.+. +. .+...|++++|+.+|.+++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 38 DHPDVATMLNILALVYR-DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp SSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34677889999999994 9999999999999999773 32 355669999999999999998
Q ss_pred ------CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Q 017806 154 ------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 154 ------~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~ 219 (365)
+|....++.++|.++...|+ +++|+.+|++++.+ .|....++.++|.++..
T Consensus 117 ~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 181 (283)
T 3edt_B 117 KVLGKFHPDVAKQLNNLALLCQNQGK--------------AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK- 181 (283)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-
T ss_pred HHcCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-
Confidence 57778899999999999999 99999999999999 77778999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH------------------------------------------hcCCCCHHHHHHH
Q 017806 220 AKMRGRTKEAEELWKQATKNYEKAV------------------------------------------QLNWNSPQALNNW 257 (365)
Q Consensus 220 ~~~~g~~~~A~~~~~~A~~~~~~al------------------------------------------~~~p~~~~~~~~l 257 (365)
.|++++|+..+++++....... ...|..+.++..+
T Consensus 182 ---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 182 ---QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999988888777644321 1235567799999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
|.+|..+|++ ++|+.+|++++++.
T Consensus 259 a~~~~~~g~~----------~~A~~~~~~al~~~ 282 (283)
T 3edt_B 259 GALYRRQGKL----------EAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHTTCH----------HHHHHHHHHHHTTC
T ss_pred HHHHHHcCCH----------HHHHHHHHHHHHhh
Confidence 9999999996 99999999999763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=120.42 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=93.6
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
.+.+.|++|+..|+++++++|+++++|+++|.++..++++... ....+.+++|+.+|+++|+++|++..+|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g----~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI----SDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchh----hhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4557899999999999999999999999999999999872111 011233679999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
+|........++.++.+.|++|+++|++|++++|++..+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 999821112366777788888889999999999987543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=128.93 Aligned_cols=167 Identities=11% Similarity=-0.041 Sum_probs=139.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
+|...+.++.+|.++...|+ +++|+..|+++++++|+++.+++++|.++.. .|++++|+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~----~g~~~~A~--- 60 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE--------------HAQALNVIQTLSDELQSRGDVKLAKADCLLE----TKQFELAQ--- 60 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC--------------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----CCCHHHHH---
Confidence 45555678899999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 234 KQATKNYEKAVQLNWNSPQALNNWGLALQ-ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
..|++++..+| ++..+..++.+.. ..+.. .+|+..|++++.++|+++.+++++|.++...|+..
T Consensus 61 ----~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 125 (176)
T 2r5s_A 61 ----ELLATIPLEYQ-DNSYKSLIAKLELHQQAAE----------SPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125 (176)
T ss_dssp ----HHHTTCCGGGC-CHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHhhhccC-ChHHHHHHHHHHHHhhccc----------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Confidence 77999999999 8887777775533 33333 56899999999999999999999999999999999
Q ss_pred hhhcCcCCCCCCCcc----hHHHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 313 LRTGGTVNPREVSPN----ELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 313 ~a~~~~~~~~~~~~~----~~~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
++...+..++..+|. ..+......+...+..+++...|.+++..
T Consensus 126 ~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 126 EALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 998887777777664 25666667778888888888888877653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=116.98 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.++.+|.++...|+ +++|+..|+++++++|+++.+|+.+|.++.. .|++++|+ ..
T Consensus 19 ~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~ 73 (121)
T 1hxi_A 19 NPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAI-------IA 73 (121)
T ss_dssp CHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred hHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence 47899999999999 9999999999999999999999999999999 99999999 88
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
|+++++++|+++.+|+++|.+|...|++ ++|+..|+++++++|++..
T Consensus 74 ~~~al~l~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 74 LNHARMLDPKDIAVHAALAVSHTNEHNA----------NAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHC-------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999996 9999999999999998754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=124.10 Aligned_cols=105 Identities=23% Similarity=0.220 Sum_probs=96.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|+++.+|+++|.
T Consensus 22 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--------------HEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456778889999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
++.. +|++++|+ .+|+++++++|++..+|++++......
T Consensus 88 ~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 88 ARFD----MADYKGAK-------EAYEKGIEAEGNGGSDAMKRGLETTKR 126 (164)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHH----ccCHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 9999 99999999 889999999999999888877765543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=143.09 Aligned_cols=188 Identities=12% Similarity=0.070 Sum_probs=152.7
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-----------------hhhhhhhHHHHHHHHHHHHHhCCCC--
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-----------------GRSRQRILTFAAKRYANAIERNPED-- 157 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~A~~~~~~al~~~p~~-- 157 (365)
....+++.+|.++. ..|++++|+.++.+++.+.+. .+...|++++|+.+|++++++.+..
T Consensus 141 ~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 141 EKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 35688999999995 999999999999999987432 3556699999999999999986543
Q ss_pred ----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHHHhcCCHH
Q 017806 158 ----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-----LC-PTLHDAFYNWAIAISDRAKMRGRTK 227 (365)
Q Consensus 158 ----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~lg~~~~~~~~~~g~~~ 227 (365)
..++.++|.++..+|+ +++|+.+|+++++ .+ |....+++++|.++.. +|+++
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 281 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQ--------------YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKID 281 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHH
T ss_pred hHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHH
Confidence 3589999999999999 9999999999999 46 7789999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 228 EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 228 ~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+|+..+++|+....+. .+|.....+..+|.++...|+. ..+.+|+..+++. ...|....++..+|.++..
T Consensus 282 ~A~~~~~~al~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-------~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 282 KAHEYHSKGMAYSQKA--GDVIYLSEFEFLKSLYLSGPDE-------EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHTSSCCH-------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 9997766666554432 1344445577899999999882 2248888888887 3445556789999999999
Q ss_pred hhhhhh
Q 017806 308 LAEDTL 313 (365)
Q Consensus 308 ~g~~~~ 313 (365)
.|+..+
T Consensus 352 ~g~~~~ 357 (383)
T 3ulq_A 352 RKNFQK 357 (383)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 997653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=121.75 Aligned_cols=107 Identities=16% Similarity=-0.013 Sum_probs=96.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+..|++++..+|.++.+|+.+|.++..+|+ +++|+.+|++++.++|+++.+++++|.
T Consensus 29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--------------YEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 456778999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
++.. .|++++|+ .+|+++++++|+++..+..+..+...++.
T Consensus 95 ~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 95 CHLQ----LGDLDGAE-------SGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999 99999999 77999999999888776666665555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-14 Score=128.59 Aligned_cols=196 Identities=10% Similarity=0.018 Sum_probs=163.5
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CccccCCCCchhhhHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~a~~~~~~~~~~~~~ 190 (365)
-..+|..+..+++..+.... ..++|+..+.++|.++|++..+|+.++.++..++ . +++
T Consensus 49 y~~~y~~~~~~~r~~~~~~e-------~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~--------------l~e 107 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEE-------KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS--------------LED 107 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-------CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--------------HHH
T ss_pred eCHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhh--------------HHH
Confidence 45667777777776655432 2467999999999999999999999999999998 6 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 017806 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-G-RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-g-~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 268 (365)
++.++++++.++|++..+|+.++.++.. . + ++++++ ..+.++++.+|++..+|+.++.++..++.++
T Consensus 108 EL~~~~~~L~~nPKny~aW~hR~wlL~~----l~~~~~~~EL-------~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 108 ELRLMNEFAVQNLKSYQVWHHRLLLLDR----ISPQDPVSEI-------EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHH----HCCSCCHHHH-------HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCCChHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999998 7 7 888777 7899999999999999999999999999861
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHH
Q 017806 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (365)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 348 (365)
.+ ....+.++++++.++++.+|.|..+|++++.++..+++.. .....+.....++.++..++|.+.
T Consensus 177 ~~--~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~------------~~~~~~~eELe~~~~aI~~~P~n~ 242 (349)
T 3q7a_A 177 RI--SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE------------TSSRSLQDELIYILKSIHLIPHNV 242 (349)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC------------CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cc--chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc------------cchHHHHHHHHHHHHHHHhCCCCH
Confidence 00 0111239999999999999999999999999999887421 123457788888899999999887
Q ss_pred HHHHH
Q 017806 349 VYSSA 353 (365)
Q Consensus 349 ~~~~a 353 (365)
....-
T Consensus 243 SaW~Y 247 (349)
T 3q7a_A 243 SAWNY 247 (349)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=116.62 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
+..++.+|.++...|+ +++|+..|++++.++|.+..+++++|.++.. .|++++|+
T Consensus 13 ~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~------- 67 (166)
T 1a17_A 13 AEELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL------- 67 (166)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred HHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH-------
Confidence 5678999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhhhhhhhh
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV--LYGLAEDTLRT 315 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~a~ 315 (365)
..|++++..+|+++.+|+++|.++..+|++ ++|+.+|++++.++|++..++..++.+ +...|+..++.
T Consensus 68 ~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 68 GDATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999999999996 999999999999999999998666665 66666554433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=141.63 Aligned_cols=184 Identities=9% Similarity=-0.022 Sum_probs=153.9
Q ss_pred hccCCCchHHHHhcCCChhHh-------hhcHH-------HHHHHHHHhhc-cChh----------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQL-------AEQNN-------AAMELINSVTG-VDEE----------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~-------~g~~~-------~A~~~~~~al~-~~~~----------~~~~~~~~~~A~~~ 146 (365)
+...|.++.+|+.+|..+ .. .|+++ +|+..|++++. ..|. .....|++++|+..
T Consensus 265 l~~~p~~~~~w~~~~~~~-~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYL-EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHH-HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 566899999999999988 35 68876 89999999997 6665 12345899999999
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHhcC
Q 017806 147 YANAIERNPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA-ISDRAKMRG 224 (365)
Q Consensus 147 ~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~g 224 (365)
|+++++++|.++ .+|..+|.++...|+ +++|+..|+++++..|.+...+...+.+ +.. .|
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~----~~ 405 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEG--------------IKSGRMIFKKAREDARTRHHVYVTAALMEYYC----SK 405 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----TC
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhccCCchHHHHHHHHHHHHH----cC
Confidence 999999999885 689999999999888 9999999999999988887777776665 345 89
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH----HHHH
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR----AIYN 300 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~ 300 (365)
++++|. ..|+++++.+|+++.+|..++.++...|+. ++|..+|++++...|.++. +|..
T Consensus 406 ~~~~A~-------~~~e~al~~~p~~~~~~~~~~~~~~~~g~~----------~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 406 DKSVAF-------KIFELGLKKYGDIPEYVLAYIDYLSHLNED----------NNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp CHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTTTCH----------HHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred ChhHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHhCCCH----------hhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 999999 778888888999999999999999999996 9999999999998766544 7777
Q ss_pred HHHHHHHhhhh
Q 017806 301 LGTVLYGLAED 311 (365)
Q Consensus 301 lg~~~~~~g~~ 311 (365)
........|+.
T Consensus 469 ~~~~e~~~G~~ 479 (530)
T 2ooe_A 469 FLAFESNIGDL 479 (530)
T ss_dssp HHHHHHHSSCH
T ss_pred HHHHHHHcCCH
Confidence 77777766754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-14 Score=109.76 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
.+..++.+|.++...|+ +++|+.+|++++..+|.++.+++.+|.++.. .|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~------ 58 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN--------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAY------ 58 (118)
T ss_dssp HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH------
T ss_pred hHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHH------
Confidence 35789999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
..++++++.+|+++.+++++|.++...|++ ++|+..|+++++.+|+++.++..++.+.
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 59 -EDGCKTVDLKPDWGKGYSRKAAALEFLNRF----------EEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 779999999999999999999999999996 9999999999999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-14 Score=109.99 Aligned_cols=119 Identities=30% Similarity=0.402 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.+++.+|.++...|+ +++|+..|+++++.+|.+..+++.+|.++.. .|++++|+ .
T Consensus 2 ~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~ 56 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAI-------E 56 (136)
T ss_dssp HHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------H
T ss_pred cHHHHHHHHHHHcCc--------------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHH-------H
Confidence 578999999999999 9999999999999999999999999999999 99999999 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhh
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
.|++++..+|++..+++.+|.++...|++ ++|+..|++++...|.+..++..+|.++...|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 120 (136)
T 2fo7_A 57 YYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120 (136)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHH
Confidence 78888899999999999999999999996 99999999999999999999999999999988654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-15 Score=134.98 Aligned_cols=179 Identities=11% Similarity=0.027 Sum_probs=146.4
Q ss_pred hhhcHHHHHHHHHHhhccChhh----------hhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-CccccC
Q 017806 112 LAEQNNAAMELINSVTGVDEEG----------RSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQES-A-DNVSLD 178 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~----------~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~-~~~~a~ 178 (365)
..+..++|+..+.+++.++|.. ....+ .+++++.++.++|..+|.+..+|+.++.++..+ + +
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~----- 140 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD----- 140 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC-----
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC-----
Confidence 3444456666666666666651 12234 599999999999999999999999999999998 7 7
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE-AEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~-A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
+++++.++.++++++|.|..+|+.++.++.. .|+++. ....+..++..+.++++.+|.+..+|+++
T Consensus 141 ---------~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R 207 (349)
T 3q7a_A 141 ---------PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR 207 (349)
T ss_dssp ---------CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8999999999999999999999999999998 777761 11223344488999999999999999999
Q ss_pred HHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 258 g~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
+.++..+++.. .....++++++++++++.++|+|..+|+.+..++...|..
T Consensus 208 ~~lL~~l~~~~---~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 208 WYLRVSRPGAE---TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHTTSTTCC---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhccccc---cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999988620 0123369999999999999999999999999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=116.22 Aligned_cols=121 Identities=20% Similarity=0.164 Sum_probs=110.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|++++..+|.+..+++++|.++...|+ +++|+.+|++++.++|.++.+++++|.
T Consensus 24 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 556889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA--LQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
++.. .|++++|+ .+|+++++++|++..++..++.+ +...|+ +++|+..+.++..+
T Consensus 90 ~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVKQKA----------FERAIAGDEHKRSV 146 (166)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHH----hccHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHcccchHHH
Confidence 9999 99999999 78999999999999998666655 666676 49999999987654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=139.29 Aligned_cols=181 Identities=15% Similarity=0.107 Sum_probs=106.5
Q ss_pred CchHHHHhcCCChhHh----hhcHHHHHHHHHHhhccChh--------hhhh----hhhHHHHHHHHHHHHHhCCCCHHH
Q 017806 97 SVTDASFSQGNTPHQL----AEQNNAAMELINSVTGVDEE--------GRSR----QRILTFAAKRYANAIERNPEDYDA 160 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~----~g~~~~A~~~~~~al~~~~~--------~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 160 (365)
+++.+++.+|.++. . .+++++|+.+|++++..... .+.. .+++++|+.+|+++++. +++.+
T Consensus 181 ~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 257 (490)
T 2xm6_A 181 GNVWSCNQLGYMYS-RGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIA 257 (490)
T ss_dssp TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CCHHHHHHHHHHHh-cCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 45556666666652 4 55666666666666554322 1111 35666666666666554 45666
Q ss_pred HHHHHHHHHH----hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc-----CCHHHHHH
Q 017806 161 LYNWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-----GRTKEAEE 231 (365)
Q Consensus 161 ~~~lg~~~~~----~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-----g~~~~A~~ 231 (365)
++++|.++.. .++ +++|+.+|+++++. .++.++++||.++.. . +++++|+
T Consensus 258 ~~~lg~~y~~g~~~~~d--------------~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~----~~~g~~~~~~~A~- 316 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKE--------------PLKALEWYRKSAEQ--GNSDGQYYLAHLYDK----GAEGVAKNREQAI- 316 (490)
T ss_dssp HHHHHHHHHHTTTSSCC--------------HHHHHHHHHHHHTT--TCHHHHHHHHHHHHH----CBTTBCCCHHHHH-
T ss_pred HHHHHHHHHCCCCCCCC--------------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc----CCCCCcCCHHHHH-
Confidence 6667766666 555 78888888887654 567778888888777 6 7777777
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG---- 307 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 307 (365)
.+|+++++. +++.+++++|.+|...|.. .++++|+.+|+++++. .++.++++||.+|..
T Consensus 317 ------~~~~~a~~~--~~~~a~~~lg~~y~~~g~~-------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 317 ------SWYTKSAEQ--GDATAQANLGAIYFRLGSE-------EEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp ------HHHHHHHHT--TCHHHHHHHHHHHHHSCCH-------HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred ------HHHHHHHhc--CCHHHHHHHHHHHHhCCCc-------ccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Confidence 445555543 3455666666666554311 2245666666666554 445566666666655
Q ss_pred hhhhhhhhcCc
Q 017806 308 LAEDTLRTGGT 318 (365)
Q Consensus 308 ~g~~~~a~~~~ 318 (365)
.++..++...+
T Consensus 380 ~~~~~~A~~~~ 390 (490)
T 2xm6_A 380 KKDEQQAAIWM 390 (490)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-15 Score=115.03 Aligned_cols=123 Identities=22% Similarity=0.243 Sum_probs=109.8
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 173 (365)
..|..+.+++.+|.++ ...|++++|+.+|+++++.+|.+..+++.+|.++...|+
T Consensus 11 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 65 (133)
T 2lni_A 11 MNPDLALMVKNKGNEC-------------------------FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65 (133)
T ss_dssp SSSCHHHHHHHHHHHH-------------------------HHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC
T ss_pred cCcccHHHHHHHHHHH-------------------------HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc
Confidence 3456677777777766 345667788888888888899999999999999999999
Q ss_pred ccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 174 NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 174 ~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
+++|+.+|+++++++|++..+++++|.++.. .|++++|+ ..|+++++.+|++..+
T Consensus 66 --------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~ 120 (133)
T 2lni_A 66 --------------FQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTKAM-------DVYQKALDLDSSCKEA 120 (133)
T ss_dssp --------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCGGGTHH
T ss_pred --------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHHhCCCchHH
Confidence 9999999999999999999999999999999 99999999 7799999999999999
Q ss_pred HHHHHHHHHHhcC
Q 017806 254 LNNWGLALQELSA 266 (365)
Q Consensus 254 ~~~lg~~~~~~~~ 266 (365)
+..++.++..+|+
T Consensus 121 ~~~l~~~~~~~~~ 133 (133)
T 2lni_A 121 ADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998774
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-14 Score=119.88 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
...++++|.++...|+ +++|+..|++++ +| ++.+++++|.++.. .|++++|+
T Consensus 6 ~~~~~~~g~~~~~~~~--------------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~----~g~~~~A~------- 57 (213)
T 1hh8_A 6 AISLWNEGVLAADKKD--------------WKGALDAFSAVQ--DP-HSRICFNIGCMYTI----LKNMTEAE------- 57 (213)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHH----TTCHHHHH-------
T ss_pred HHHHHHHHHHHHHhCC--------------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHH----cCCHHHHH-------
Confidence 3457899999999999 999999999995 44 78999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH----------------HHHHHH
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH----------------RAIYNL 301 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l 301 (365)
..|++++.++|+++.+|+++|.++..+|++ ++|+..|++++++.|++. .+++++
T Consensus 58 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 58 KAFTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 779999999999999999999999999996 999999999999888776 999999
Q ss_pred HHHHHHhhhhhhhhcC
Q 017806 302 GTVLYGLAEDTLRTGG 317 (365)
Q Consensus 302 g~~~~~~g~~~~a~~~ 317 (365)
|.++..+|+...+...
T Consensus 128 ~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 128 AFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHccCHHHHHHH
Confidence 9999999977544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=127.17 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=100.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
++..|++++|+.+|.+++.+.|.++ .++.++|.++..+|+ +++|+.+|++
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~ 113 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------------YPKAIDHASK 113 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHH
Confidence 4556778888888888888877776 899999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 198 al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++.++|++..+++++|.++.. +|++++|+ ..|+++++++|++..++..++.++..+++.
T Consensus 114 al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 114 VLKIDKNNVKALYKLGVANMY----FGFLEEAK-------ENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999 889999999999999999999999999885
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=138.28 Aligned_cols=189 Identities=10% Similarity=-0.006 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
.++|+..+.+++.++|++..+|+.++.++..+++.. ........+++++.+++++++.+|++..+|+.++.++..
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~----~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~- 119 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR- 119 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccccc----chhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 468899999999999999999999999999987610 001112338999999999999999999999999999999
Q ss_pred HHhcC--CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 220 AKMRG--RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 220 ~~~~g--~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
.| ++++++ ..+.++++.+|++..+|+++|.++..+|.. ++++++++.++++.+|++..+
T Consensus 120 ---l~~~~~~~el-------~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~---------~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 120 ---LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVA---------PAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp ---CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTCCC---------HHHHHHHHHTTTTTTCCCHHH
T ss_pred ---cccccHHHHH-------HHHHHHHhhccccccHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHHCCCCccH
Confidence 99 668888 889999999999999999999999999933 599999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHHhh
Q 017806 298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (365)
Q Consensus 298 ~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~~~ 357 (365)
|+++|.++..++....+... ..-....+..+..++.++..++|.+...+..++.+
T Consensus 181 W~~r~~ll~~l~~~~~~~~~-----~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQ-----GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSC-----CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccc-----ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99999999987643211000 01123568889999999999999987666555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=113.97 Aligned_cols=119 Identities=18% Similarity=0.102 Sum_probs=112.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
.+|.+...++.+|.++...|+ +++|+.+|+++++++|++ ..+++++|.++.. .|++++|
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A 84 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGD--------------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKA 84 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHH
Confidence 467889999999999999999 999999999999999998 8999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+ ..|+++++.+|+++.+++++|.++..+|++ ++|+.+|++++.++|++..++..++.+..
T Consensus 85 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 85 E-------TEASKAIEKDGGDVKALYRRSQALEKLGRL----------DQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp H-------HHHHHHHHHTSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred H-------HHHHHHHhhCccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9 779999999999999999999999999996 99999999999999999999988887653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=112.26 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=101.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+.+|++++.++|++..+++.+|.
T Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--------------YAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--------------hHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 455778888999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++.. .|++++|+ ..|+++++.+|++..++..+|.++..+|++
T Consensus 89 ~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSS----LNKHVEAV-------AYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHH----hCCHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999 99999999 779999999999999999999999999874
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=133.68 Aligned_cols=170 Identities=17% Similarity=0.124 Sum_probs=145.4
Q ss_pred cCCCchHHHHhcCCChhHh----hhcHHHHHHHHHHhhccChh--------hhhh----hhhHHHHHHHHHHHHHhCCCC
Q 017806 94 GEDSVTDASFSQGNTPHQL----AEQNNAAMELINSVTGVDEE--------GRSR----QRILTFAAKRYANAIERNPED 157 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~----~g~~~~A~~~~~~al~~~~~--------~~~~----~~~~~~A~~~~~~al~~~p~~ 157 (365)
.+..++.+++.+|.++. . .+++++|+.+|++++..... .+.. .+++++|+.+|+++++. ++
T Consensus 214 ~~~~~~~a~~~lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~ 290 (490)
T 2xm6_A 214 ATSGDELGQLHLADMYY-FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN 290 (490)
T ss_dssp HHTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC
T ss_pred HHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC
Confidence 34567889999999994 5 78999999999999987643 1222 58999999999999865 67
Q ss_pred HHHHHHHHHHHHHh-----cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC---CHHHH
Q 017806 158 YDALYNWALVLQES-----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG---RTKEA 229 (365)
Q Consensus 158 ~~~~~~lg~~~~~~-----~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g---~~~~A 229 (365)
+.+++.+|.++... ++ +++|+.+|+++++. .++.++++||.++.. .| ++++|
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~--------------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~----~g~~~~~~~A 350 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKN--------------REQAISWYTKSAEQ--GDATAQANLGAIYFR----LGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH----SCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCC--------------HHHHHHHHHHHHhc--CCHHHHHHHHHHHHh----CCCcccHHHH
Confidence 89999999999987 77 99999999999986 578899999999988 76 55555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 305 (365)
+ .+|+++++. +++.+++++|.+|.. .+++ ++|+.+|+++++. .++.++++||.+|
T Consensus 351 ~-------~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~----------~~A~~~~~~A~~~--~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 351 V-------EWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE----------QQAAIWMRKAAEQ--GLSAAQVQLGEIY 409 (490)
T ss_dssp H-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred H-------HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 5 888888876 689999999999999 7775 9999999999986 4699999999999
Q ss_pred HH
Q 017806 306 YG 307 (365)
Q Consensus 306 ~~ 307 (365)
..
T Consensus 410 ~~ 411 (490)
T 2xm6_A 410 YY 411 (490)
T ss_dssp HH
T ss_pred Hc
Confidence 87
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=131.85 Aligned_cols=179 Identities=12% Similarity=0.076 Sum_probs=140.1
Q ss_pred hhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCccccCCCCchhhh
Q 017806 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDA 186 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~ 186 (365)
.++++.|+.+|.++.. .+...|++++|+.+|.+++++.+.. ..++.++|.+|..+|+
T Consensus 29 ~~~~~~A~~~~~~a~~----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~------------- 91 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAV----AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR------------- 91 (307)
T ss_dssp SCCHHHHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred CCCHHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-------------
Confidence 5889999999998843 4556799999999999999986533 5688999999999999
Q ss_pred HHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 187 LLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
+++|+.+|++++++.+. ...++.++|.++ . .|++++|+..|++|+..+... ........++.++|.+
T Consensus 92 -~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~-~----~g~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg~~ 164 (307)
T 2ifu_A 92 -MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-E----PLDLSKAVHLYQQAAAVFENE-ERLRQAAELIGKASRL 164 (307)
T ss_dssp -GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-T----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-H----cCCHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 99999999999998543 246788999888 3 499999996666665555431 0000125789999999
Q ss_pred HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
|..+|++ ++|+.+|++++.+.|++ ..++.++|.++..+|+...+...+..++ ..|
T Consensus 165 ~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 165 LVRQQKF----------DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHcCCH----------HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 9999996 99999999999986544 3478889999999998887777665555 444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=128.93 Aligned_cols=154 Identities=17% Similarity=0.015 Sum_probs=105.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|+++++.+|++..+++++|.++..+|+ +++|+..|+++++++|++..+++++|.
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------------PEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456778888888889999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
++.. +|++++|+ ..|+++++++|++...+.......... .++..+........|.+
T Consensus 81 ~~~~----~g~~~~A~-------~~~~~al~l~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 136 (281)
T 2c2l_A 81 CQLE----MESYDEAI-------ANLQRAYSLAKEQRLNFGDDIPSALRI-------------AKKKRWNSIEERRIHQE 136 (281)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCCCSHHHHHHHH-------------HHHHHHHHHHHTCCCCC
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCccchhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhh
Confidence 9999 99999999 667777777775532222121211111 11222222223344555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch
Q 017806 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE 328 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~ 328 (365)
..+...++.++ .|+...+...+..+....|.+
T Consensus 137 ~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 137 SELHSYLTRLI--AAERERELEECQRNHEGHEDD 168 (281)
T ss_dssp CHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhccccch
Confidence 55555555443 455555555555555555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=132.75 Aligned_cols=163 Identities=12% Similarity=-0.023 Sum_probs=130.2
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC------CH
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE------DY 158 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~------~~ 158 (365)
.+...|.++ ...|++++|+..|.+++.+.+. .+...|++++|+.+|++++++.+. ..
T Consensus 38 ~~~~a~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAF-KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345557778 4999999999999999988643 244558999999999999998543 25
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.++.++|.+|.. |+ +++|+.+|++++.+.|.. ..++.++|.++.. +|++++|+..
T Consensus 117 ~~~~~lg~~~~~-g~--------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~ 177 (307)
T 2ifu_A 117 MALDRAGKLMEP-LD--------------LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAAS 177 (307)
T ss_dssp HHHHHHHHHHTT-TC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHHc-CC--------------HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 688999999998 99 999999999999997653 6789999999999 9999999966
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
|++|+..+...- ..+....++.++|.++..+|++ ++|+.+|++++ ++|++.
T Consensus 178 ~~~al~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 178 LQKEKSMYKEME-NYPTCYKKCIAQVLVQLHRADY----------VAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHh-CCCCCC
Confidence 555554443210 0011245888999999999996 99999999999 999764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-15 Score=118.69 Aligned_cols=104 Identities=19% Similarity=0.136 Sum_probs=89.2
Q ss_pred hhhhhHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-
Q 017806 135 SRQRILTFAAKRYANAIERNPE-------DYD-----ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL- 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~- 201 (365)
+..|+|++|+.+|+++|+++|+ +.. +|.++|.++..+|+ |++|+.+|+++|++
T Consensus 22 ~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------------~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------------FDEALHSADKALHYF 87 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhh
Confidence 4456677777777777777777 433 99999999999999 99999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 202 ------CPTLHDAF----YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 202 ------~p~~~~~~----~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
+|++..+| +++|.++.. +|++++|+ .+|+++++++|++..++..+..+...
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl-------~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAM-------PEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999 999999999 99999999 88999999999887766665555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=140.07 Aligned_cols=172 Identities=12% Similarity=-0.010 Sum_probs=148.3
Q ss_pred HHHHHHHHHhhccChhh----------hhh-------hhhHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHh
Q 017806 117 NAAMELINSVTGVDEEG----------RSR-------QRILT-------FAAKRYANAIE-RNPEDYDALYNWALVLQES 171 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~----------~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~ 171 (365)
..++..|++++...|.. +.. .|+++ +|+..|+++++ .+|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 47888999999988761 111 47766 89999999998 8999999999999999999
Q ss_pred cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 172 ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
|+ +++|+..|+++++++|.++ .+|.++|.++.. .|++++|+ ..|+++++..|..
T Consensus 335 g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~-------~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 335 MK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGR-------MIFKKAREDARTR 389 (530)
T ss_dssp TC--------------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHTCTTCC
T ss_pred CC--------------HHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHhccCCc
Confidence 99 9999999999999999985 699999999998 99999988 7789999988888
Q ss_pred HHHHHHHHHH-HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 251 PQALNNWGLA-LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 251 ~~~~~~lg~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
...+...+.+ +...|+. ++|...|+++++..|+++.+|.+++.++...|+...+...+..++.
T Consensus 390 ~~~~~~~a~~~~~~~~~~----------~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp THHHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 8877776665 3457885 9999999999999999999999999999999988777666555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-15 Score=129.97 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=152.2
Q ss_pred hccCCCchHHHHhc-------CCChhHhhhcHHHHHHHHHHhhccChh---------h----------------------
Q 017806 92 SEGEDSVTDASFSQ-------GNTPHQLAEQNNAAMELINSVTGVDEE---------G---------------------- 133 (365)
Q Consensus 92 ~~~~~~~~~a~~~~-------g~~~~~~~g~~~~A~~~~~~al~~~~~---------~---------------------- 133 (365)
...+|+.+++|.++ +.++ ...+++.+++..+++++.+.|. +
T Consensus 33 ~~~dP~~~Daw~g~~a~g~~~~~~L-~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 33 TNYDESACDAWIGRIRCGDTDRVTL-FRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC 111 (282)
T ss_dssp HHHCTTCHHHHHHHHHTTCCCHHHH-HHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred HHhChhhhHHHHhHHHccCCcHHHH-HHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence 57899999999999 8899 5999999999999999998765 2
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-C-HHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-L-HDAFYN 211 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~ 211 (365)
+...|+|++|.+.|..++..+|++. +++.+|.++...++ |++|+.+|++++...+. . ..++++
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r--------------~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER--------------WTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC--------------HHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC--------------HHHHHHHHHHhhccCCcccHHHHHHH
Confidence 2335999999999999999999988 99999999999999 99999999988775322 1 468999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
+|.++.. +|++++|+ .+|++++... |. .+++++++|.++.++|+. ++|...|++++
T Consensus 177 LG~al~~----LG~~~eAl-------~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~----------deA~~~l~~a~ 235 (282)
T 4f3v_A 177 HGVAAAN----LALFTEAE-------RRLTEANDSPAGEACARAIAWYLAMARRSQGNE----------SAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHH----TTCHHHHH-------HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHH
T ss_pred HHHHHHH----CCCHHHHH-------HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Confidence 9999999 99999999 7788887544 65 678999999999999997 99999999999
Q ss_pred HhCCCCHHHHHHHHH
Q 017806 289 QLQFDFHRAIYNLGT 303 (365)
Q Consensus 289 ~~~p~~~~~~~~lg~ 303 (365)
..+|+ ..++..|..
T Consensus 236 a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 236 TTHPE-PKVAAALKD 249 (282)
T ss_dssp HHSCC-HHHHHHHHC
T ss_pred hcCCc-HHHHHHHhC
Confidence 99999 877766643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-15 Score=136.91 Aligned_cols=160 Identities=13% Similarity=0.006 Sum_probs=133.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---
Q 017806 134 RSRQRILTFAAKRYANAIERNP------EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--- 204 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--- 204 (365)
+...|++++|+.+|++++++.+ ..+.+++++|.++..+|+ +++|+.++++++++.+.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~--------------~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ--------------THVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHHHHHhCCC
Confidence 4566999999999999998742 346789999999999999 99999999999998543
Q ss_pred ----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 205 ----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 205 ----~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
...+++++|.++.. .|++++|+..|++|+..+++. ...+....+++++|.+|..+|++ ++|
T Consensus 177 ~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~----------~~A 241 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDD----FKHYDKALPHLEAALELAMDI-QNDRFIAISLLNIANSYDRSGDD----------QMA 241 (378)
T ss_dssp CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------HHH
T ss_pred chhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCCH----------HHH
Confidence 35689999999999 999999997777777665432 11122457899999999999996 999
Q ss_pred HHHHHHHHH-----hCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 281 ISKFRAAIQ-----LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 281 ~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
+.+|++++. .+|..+.++.++|.++..+|+..++...+..++
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999 788889999999999999999887766554433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=117.92 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=109.9
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA- 260 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~- 260 (365)
....|++++|+..|++++..+|+++.+|+.+|.++.. .|++++|+ ..|+++++++|+++.++.++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~la~~l 88 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSL-------LAYRQALQLRGENAELYAALATVL 88 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4456779999999999999999999999999999999 99999999 77999999999999999999999
Q ss_pred HHHhcCcchhHHhhhHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHH
Q 017806 261 LQELSAIVPAREKQTIV--RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA 338 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 338 (365)
+...|+ + ++|+.+|++++..+|++..+++++|.++...|+. ..+..+|.
T Consensus 89 ~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------------------~~A~~~~~ 139 (177)
T 2e2e_A 89 YYQASQ----------HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY-------------------AQAIELWQ 139 (177)
T ss_dssp HHHTTT----------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------------------HHHHHHHH
T ss_pred HHhcCC----------cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH-------------------HHHHHHHH
Confidence 778887 5 9999999999999999999999999999999966 45666667
Q ss_pred HHHhcCccH
Q 017806 339 AAHALKPSY 347 (365)
Q Consensus 339 ~a~~~~~~~ 347 (365)
++..+.|.+
T Consensus 140 ~al~~~p~~ 148 (177)
T 2e2e_A 140 KVMDLNSPR 148 (177)
T ss_dssp HHHHTCCTT
T ss_pred HHHhhCCCC
Confidence 777777765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=121.66 Aligned_cols=177 Identities=14% Similarity=0.065 Sum_probs=141.9
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh--------hhhhhh----hHHHHHHHHHHHHHhCCCCHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------GRSRQR----ILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~----~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
.+..++.+++.+|.++. ..+++++|+.+|++++..... .+.. + ++++|+.+|+++++ ++++.++
T Consensus 13 a~~g~~~a~~~lg~~~~-~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~ 88 (212)
T 3rjv_A 13 AEAGDRRAQYYLADTWV-SSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGE 88 (212)
T ss_dssp HHTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHH
T ss_pred HHCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHH
Confidence 34578999999999994 999999999999999987532 1222 5 89999999999965 6799999
Q ss_pred HHHHHHHHH----hcCccccCCCCchhhhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 162 YNWALVLQE----SADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 162 ~~lg~~~~~----~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
++||.+|.. .++ +++|+.+|+++++..+ .++.++++||.+|..-.-..+++++|+
T Consensus 89 ~~Lg~~y~~g~g~~~d--------------~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~----- 149 (212)
T 3rjv_A 89 IVLARVLVNRQAGATD--------------VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS----- 149 (212)
T ss_dssp HHHHHHHTCGGGSSCC--------------HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH-----
T ss_pred HHHHHHHHcCCCCccC--------------HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH-----
Confidence 999999987 677 9999999999999988 459999999999976100124677777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSA--IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
.+|+++++. +.++.+++++|.+|..... . ..++++|+.+|+++++.. +..+...|+.+
T Consensus 150 --~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~------~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 150 --EYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFI------EPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp --HHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTB------CCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred --HHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCC------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 889999988 7788899999999987531 0 012599999999999884 56666666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-15 Score=143.39 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=111.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|+++.+++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456778899999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhcCcchhHHhhhHHHHHHHHHH-------
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA--LQELSAIVPAREKQTIVRTAISKFR------- 285 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~~~~~~~~~~~A~~~~~------- 285 (365)
++.. +|++++|+ ..|+++++++|++..++.+++.+ +...|++ ++|++.++
T Consensus 83 ~~~~----~g~~~eA~-------~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~----------~~A~~~~~~~~~~~~ 141 (477)
T 1wao_1 83 SNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVKQKAF----------ERAIAGDEHKRSVVD 141 (477)
T ss_dssp HHHH----HTCHHHHH-------HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH----------CCC------CCSTTT
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----------HHHhccccccchhHh
Confidence 9999 99999999 77999999999999999999999 7777775 99999999
Q ss_pred ----HHHHhCCCCH
Q 017806 286 ----AAIQLQFDFH 295 (365)
Q Consensus 286 ----~al~~~p~~~ 295 (365)
+++.++|++.
T Consensus 142 ~~~~~al~~~~~~~ 155 (477)
T 1wao_1 142 SLDIESMTIEDEYS 155 (477)
T ss_dssp CCTTSSCCCCTTCC
T ss_pred hhhhhhcccccccc
Confidence 8888877653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=128.54 Aligned_cols=150 Identities=16% Similarity=0.068 Sum_probs=122.8
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYD------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-- 205 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 205 (365)
+...|++++|+..|++++...+..+. .+..+|.++...++ +++|+.+|++++.+.+..
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------YEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC--------------HHHHHHHHHHHHHTCCCCSC
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC--------------HHHHHHHHHHHHHHhccccc
Confidence 35568899999999999998777655 23358888888888 999999999999975442
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 206 ----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
..+++++|.+|.. .|++++|+.+|++|++.++..-...+....+++++|.+|..+|++ ++|+
T Consensus 151 ~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y----------~~A~ 216 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY----------EESL 216 (293)
T ss_dssp TTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH----------HHHH
Confidence 4479999999999 999999998888887766543122334567999999999999996 9999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhhhh
Q 017806 282 SKFRAAIQLQFDF------HRAIYNLGTVLYGLAED 311 (365)
Q Consensus 282 ~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~ 311 (365)
.+|++++++.+.. +.+++++|.++..+|+.
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 252 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999986443 78999999999999954
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.6e-14 Score=119.50 Aligned_cols=177 Identities=13% Similarity=-0.021 Sum_probs=139.4
Q ss_pred HHHHHHHHhhccCh-h-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CccccCCCCchhh
Q 017806 118 AAMELINSVTGVDE-E-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA----DNVSLDSTSPSKD 185 (365)
Q Consensus 118 ~A~~~~~~al~~~~-~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~----~~~~a~~~~~~~~ 185 (365)
+|+.+|+++..... . .+...+++++|+.+|+++++. +++.++++||.+|.. + +
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~------------ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD------------ 68 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC------------
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC------------
Confidence 46677777776642 2 344569999999999999875 689999999999998 6 6
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW--NSPQALNNWGLALQE 263 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~ 263 (365)
+++|+.+|+++++ +.++.++++||.+|..-.-..+++++|+ .+|+++++..+ +++.++++||.+|..
T Consensus 69 --~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~-------~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 69 --YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAI-------TLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp --HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHH-------HHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHH-------HHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 9999999999965 6799999999999953100145778888 88999999887 459999999999999
Q ss_pred ----hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHH
Q 017806 264 ----LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA 339 (365)
Q Consensus 264 ----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 339 (365)
.+++ ++|+.+|+++++. +.++.++++||.+|.....-. . ...+..+..+|.+
T Consensus 138 g~g~~~d~----------~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~---------~----~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 138 GVHGPEDD----------VKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGF---------I----EPNKQKALHWLNV 193 (212)
T ss_dssp TSSSSCCH----------HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTT---------B----CCCHHHHHHHHHH
T ss_pred CCCCCCCH----------HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCC---------C----CCCHHHHHHHHHH
Confidence 6675 9999999999998 777889999999987642100 0 0124668888888
Q ss_pred HHhcC
Q 017806 340 AHALK 344 (365)
Q Consensus 340 a~~~~ 344 (365)
+.+..
T Consensus 194 A~~~g 198 (212)
T 3rjv_A 194 SCLEG 198 (212)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 88774
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-14 Score=109.01 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
..+.+++.+|.++...|+ +++|+.+|++++.++|.++.+++++|.++.. .|++++|+
T Consensus 2 ~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~----- 58 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKD--------------FDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCR----- 58 (131)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-----
T ss_pred hHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHH-----
Confidence 346789999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 236 ATKNYEKAVQLNWNS-------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 236 A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
..|++++..+|++ ..+++++|.++...|++ ++|+.+|++++.+.| +...+..++.+...+
T Consensus 59 --~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 59 --ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY----------KDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp --HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 6677777777666 89999999999999996 999999999999999 689999999988877
Q ss_pred hhh
Q 017806 309 AED 311 (365)
Q Consensus 309 g~~ 311 (365)
++.
T Consensus 126 ~~~ 128 (131)
T 1elr_A 126 KEQ 128 (131)
T ss_dssp HHC
T ss_pred HHh
Confidence 653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=129.76 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
|.++.+++.+|.++...|+ +++|+..|++++.++|+++.+++++|.++.. .|++++|+
T Consensus 1 p~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~---- 58 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL---- 58 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH----
T ss_pred ChhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHH----
Confidence 5678899999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
..|+++++++|+++.+++++|.+|..+|++ ++|+..|++++.++|++.
T Consensus 59 ---~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 59 ---ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ---HHHHHHTTSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCccch
Confidence 789999999999999999999999999996 999999999999998763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=107.88 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=102.5
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
++|++..+++.+|.++...|+ +++|+.+|+++++++|.+..+++++|.++.. .|++++|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-- 60 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGN--------------YTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAV-- 60 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHH--
T ss_pred CCCCcHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHH--
Confidence 468899999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHh-cCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 233 WKQATKNYEKAVQLNWN--SPQALNNWGLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
..|+++++.+|+ +..+++++|.++..+ |++ ++|+++|++++...|.+
T Consensus 61 -----~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 61 -----DCYNYVINVIEDEYNKDVWAAKADALRYIEGKE----------VEAEIAEARAKLEHHHH 110 (112)
T ss_dssp -----HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCS----------HHHHHHHHHHGGGCCCC
T ss_pred -----HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHhhcccCC
Confidence 789999999999 999999999999999 997 99999999999999875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=123.76 Aligned_cols=165 Identities=10% Similarity=-0.027 Sum_probs=132.7
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCCC--
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPED-- 157 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~~-- 157 (365)
|.....+...+..+. ..|++++|+..+.+++...+. .+...|++++|+.+|+++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~-~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 72 IERKKQFKDQVIMLC-KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred hhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556667777784 999999999999999876542 1233479999999999999876543
Q ss_pred ----HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHHHhcCCH
Q 017806 158 ----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT---RLCPTLH----DAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 158 ----~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~lg~~~~~~~~~~g~~ 226 (365)
..+++++|.+|...|+ +++|+.+|++++ +..|++. .+++++|.++.. +|++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~--------------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y 212 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGY--------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRY 212 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCH
T ss_pred hHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhH
Confidence 6689999999999999 999999999999 4456543 689999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH-HHHHHHHHHh
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA-ISKFRAAIQL 290 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 290 (365)
++|+.++++|+..... .........+++++|.+|..+|++ ++| ..+|++|+.+
T Consensus 213 ~~Al~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~----------~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 213 EESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYE----------EAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHH
Confidence 9999777777665532 122222378999999999999997 999 7889999876
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=105.27 Aligned_cols=106 Identities=31% Similarity=0.400 Sum_probs=98.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|++++..+|.+..+++.+|.++...|+ +++|+.+|++++.++|.+..+++.+|.
T Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 445778888888899999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
++.. .|++++|+ ..|+++++.+|++..++.++|.++...|
T Consensus 86 ~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYK----QGDYDEAI-------EYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHH----hcCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999 99999999 7799999999999999999999998765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=110.31 Aligned_cols=93 Identities=16% Similarity=0.072 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+..|+++++.+|+++.+|+.+|.++...|+ +++|+.+|+++++++|+++.+++++|.
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLDPKDIAVHAALAV 93 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
++.. .|++++|+ ..|+++++++|++..
T Consensus 94 ~~~~----~g~~~~A~-------~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 94 SHTN----EHNANAAL-------ASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHH----HHHHHHHH-------HHHHHHHC-------
T ss_pred HHHH----cCCHHHHH-------HHHHHHHHhCcCCCC
Confidence 9999 99999999 789999999998654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=106.75 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+++.+|.++...|+ +++|+..|++++..+|++. .+++.+|.++.. .|++++|+
T Consensus 3 ~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~----- 59 (129)
T 2xev_A 3 RTAYNVAFDALKNGK--------------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAE----- 59 (129)
T ss_dssp CCHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred HHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHH-----
Confidence 357899999999999 9999999999999999988 899999999999 99999999
Q ss_pred HHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 236 ATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 236 A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
..|++++..+|++ +.+++++|.++..+|++ ++|+..|++++...|++..+...+..+...
T Consensus 60 --~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 60 --AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN----------TEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp --HHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 7799999999999 89999999999999996 999999999999999998877666555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.3e-15 Score=140.76 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=112.7
Q ss_pred hhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 017806 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPED---------------YDALYNWAL 166 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 166 (365)
.++++++|+..|..++...+. .++..|+|++|+.+|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555554433 4566799999999999999999998 699999999
Q ss_pred HHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 167 VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
++..+|+ |++|+.+|+++++++|+++.+|+++|.++.. +|++++|+ .+|++++++
T Consensus 326 ~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~-------~~~~~al~l 380 (457)
T 1kt0_A 326 CYLKLRE--------------YTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAK-------GDFEKVLEV 380 (457)
T ss_dssp HHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHTT
T ss_pred HHHHhcC--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHh
Confidence 9999999 9999999999999999999999999999999 99999999 889999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCc
Q 017806 247 NWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+|++..++.+++.++..++++
T Consensus 381 ~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 381 NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp C----CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-14 Score=114.95 Aligned_cols=137 Identities=14% Similarity=0.074 Sum_probs=102.3
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccC
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
+..+..+|..++ ..|++++|+..|.+++.+.+....... .... .....+|.+..+|.++|.++..+|+
T Consensus 11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~nla~~~~~~~~----- 78 (162)
T 3rkv_A 11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREK-PGEP-----EWVELDRKNIPLYANMSQCYLNIGD----- 78 (162)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSC-TTSH-----HHHHHHHTHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCC-CCHH-----HHHHHHHHHHHHHHHHHHHHHhcCc-----
Confidence 455666666663 566666666555555554221100000 0000 0012267788999999999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-QALNNW 257 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~-~~~~~l 257 (365)
|++|+.+|+++++++|+++.+|+.+|.++.. +|++++|+ ..|+++++++|++. .+...+
T Consensus 79 ---------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~-------~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 79 ---------LHEAEETSSEVLKREETNEKALFRRAKARIA----AWKLDEAE-------EDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp ---------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCGGGHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHH-------HHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 88999999999998 778888
Q ss_pred HHHHHHhcCc
Q 017806 258 GLALQELSAI 267 (365)
Q Consensus 258 g~~~~~~~~~ 267 (365)
+.+...+++.
T Consensus 139 ~~~~~~~~~~ 148 (162)
T 3rkv_A 139 KIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-14 Score=110.17 Aligned_cols=122 Identities=21% Similarity=0.098 Sum_probs=104.6
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN 174 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 174 (365)
++.++..++.+|.++ +..|++++|+.+|.+++..+|.++.+++++|.++..+|+
T Consensus 5 ~~~~~~~~~~~g~~~-------------------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~- 58 (137)
T 3q49_B 5 KSPSAQELKEQGNRL-------------------------FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ- 58 (137)
T ss_dssp -CCCHHHHHHHHHHH-------------------------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred ccccHHHHHHHHHHH-------------------------HHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-
Confidence 455666777777666 456778889999999999999999999999999999999
Q ss_pred cccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC-----
Q 017806 175 VSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN----- 249 (365)
Q Consensus 175 ~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~----- 249 (365)
+++|+.+|+++++++|+++.+++++|.++.. .|++++|+ ..|+++++++|+
T Consensus 59 -------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~ 114 (137)
T 3q49_B 59 -------------PEQALADCRRALELDGQSVKAHFFLGQCQLE----MESYDEAI-------ANLQRAYSLAKEQRLNF 114 (137)
T ss_dssp -------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCC
T ss_pred -------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHHHChhHHHHH
Confidence 9999999999999999999999999999999 99999999 668888877777
Q ss_pred CHHHHHHHHHHHHHhcC
Q 017806 250 SPQALNNWGLALQELSA 266 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~ 266 (365)
+..++..+..+......
T Consensus 115 ~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 115 GDDIPSALRIAKKKRWN 131 (137)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777777665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=130.66 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=126.4
Q ss_pred cCCCchHHHHhcCCChhHhhhcH---HHHHHHHHHhhccChhhh-------hhh-----hhHHHHHHHHHHHHHhCCCCH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQN---NAAMELINSVTGVDEEGR-------SRQ-----RILTFAAKRYANAIERNPEDY 158 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~---~~A~~~~~~al~~~~~~~-------~~~-----~~~~~A~~~~~~al~~~p~~~ 158 (365)
.+++++.+++.+|.++. ..|+. ++|+.+|++++..++.++ ... +++++|+.+|+++++.+ ++
T Consensus 30 a~~g~~~A~~~Lg~~y~-~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~ 106 (452)
T 3e4b_A 30 AELGYSEAQVGLADIQV-GTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EG 106 (452)
T ss_dssp HHHTCCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CS
T ss_pred HHCCCHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CH
Confidence 34567899999999995 88888 999999999998865521 111 48899999999998853 34
Q ss_pred HHHHHHHHHHHHhcCcccc--------------------------------------------------------CCCCc
Q 017806 159 DALYNWALVLQESADNVSL--------------------------------------------------------DSTSP 182 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a--------------------------------------------------------~~~~~ 182 (365)
.++++||.+|...+....+ .+..+
T Consensus 107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~ 186 (452)
T 3e4b_A 107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVY 186 (452)
T ss_dssp SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677777777665442222 00011
Q ss_pred hhhh---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 183 SKDA---LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR----GRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 183 ~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~----g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
...| ++++|+.+|+++.+..|..+..+++||.+|.. . +++++|+ .+|+++. |+++.+++
T Consensus 187 ~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~----g~~~~~d~~~A~-------~~~~~aa---~g~~~a~~ 252 (452)
T 3e4b_A 187 QKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGD----ATLGTPDEKTAQ-------ALLEKIA---PGYPASWV 252 (452)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC----GGGSSCCHHHHH-------HHHHHHG---GGSTHHHH
T ss_pred HHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCCCCCHHHHH-------HHHHHHc---CCCHHHHH
Confidence 1124 89999999999999999999999999999966 4 6888888 7788876 88899999
Q ss_pred HHHHHHH---HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----hhhhhhcCcCCCC
Q 017806 256 NWGLALQ---ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA-----EDTLRTGGTVNPR 322 (365)
Q Consensus 256 ~lg~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~a~~~~~~~~ 322 (365)
++|.+|. ..++ +++|+.+|+++++. +++.++++||.+|. .| +..++...+..+.
T Consensus 253 ~Lg~~~~~~~~~~d----------~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 253 SLAQLLYDFPELGD----------VEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHSGGGCC----------HHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCC----------HHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9999844 3444 58888888888754 47888888888887 55 6666666555555
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=104.15 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=97.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+.+|++++..+|.+..++..+|.++...|+ +++|+..|++++.++|++..+++++|.
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------------YQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456789999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
++.. .|++++|+ ..|+++++.+|++..++..++.+..
T Consensus 81 ~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 81 ALEF----LNRFEEAK-------RTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHH----HhhHHHHH-------HHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999 99999999 7899999999999999999988753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=131.43 Aligned_cols=172 Identities=14% Similarity=0.089 Sum_probs=85.6
Q ss_pred hHHHHhcCCChhHhhh----cHHHHHHHHHHhhccChhhhhh-------hh---hHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 99 TDASFSQGNTPHQLAE----QNNAAMELINSVTGVDEEGRSR-------QR---ILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~-------~~---~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
+.+++.+|.++. ..+ ..+.+..+++.+...++.+++. .| ++++|+.+|+++++.+|.....++++
T Consensus 141 ~~a~~~Lg~~y~-~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYR-TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHH-HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444444442 333 3344444455555544443221 23 56666666666666666655555666
Q ss_pred HHHHHHh----cCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 165 ALVLQES----ADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 165 g~~~~~~----~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
|.+|... ++ +++|+.+|+++. |.++.++++||.+|.. ....+++++|+ .+|
T Consensus 220 g~~y~~g~~~~~d--------------~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~-~~~~~d~~~A~-------~~~ 274 (452)
T 3e4b_A 220 ARVLGDATLGTPD--------------EKTAQALLEKIA---PGYPASWVSLAQLLYD-FPELGDVEQMM-------KYL 274 (452)
T ss_dssp HHHHTCGGGSSCC--------------HHHHHHHHHHHG---GGSTHHHHHHHHHHHH-SGGGCCHHHHH-------HHH
T ss_pred HHHHhCCCCCCCC--------------HHHHHHHHHHHc---CCCHHHHHHHHHHHHh-CCCCCCHHHHH-------HHH
Confidence 6665433 23 566666666655 5556666666665321 00045555555 445
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+++++. +++.+++++|.+|. .|.- -..++++|+.+|++++ +.++.++++||.+|..
T Consensus 275 ~~Aa~~--g~~~A~~~Lg~~y~-~G~g-----~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 275 DNGRAA--DQPRAELLLGKLYY-EGKW-----VPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHHT--TCHHHHHHHHHHHH-HCSS-----SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHHHHC--CCHHHHHHHHHHHH-cCCC-----CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 554432 35555566665555 3300 0001355555555555 5555555555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-13 Score=119.86 Aligned_cols=149 Identities=16% Similarity=0.086 Sum_probs=124.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-- 205 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 205 (365)
+...|++++|+..+.++++..+... ..++.+|.++...|+ +++|+.+|++++.+.+..
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------YEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--------------HHHHHHHHHHHHTTCCCSSC
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHHhcCCc
Confidence 4567899999999999999988754 346678888888889 999999999999876543
Q ss_pred ----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 206 ----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 206 ----~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
..+++++|.+|.. .|++++|+.+|++|++.++. .|++ ..+++++|.+|..+|++
T Consensus 151 ~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~----~~~~~~~~~~~~~nlg~~y~~~~~y---------- 212 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEA----LHDNEEFDVKVRYNHAKALYLDSRY---------- 212 (293)
T ss_dssp TTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHTTCH----------
T ss_pred hHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHh----cCccccchHHHHHhHHHHHHHHhhH----------
Confidence 6789999999999 99999999776666655443 4443 26999999999999996
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhhhhhh
Q 017806 278 RTAISKFRAAIQLQFD------FHRAIYNLGTVLYGLAEDTLR 314 (365)
Q Consensus 278 ~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~a 314 (365)
++|+.+|++++.+.++ .+.+++++|.++..+|+..++
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999988543 278999999999999987654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-15 Score=130.48 Aligned_cols=177 Identities=11% Similarity=0.014 Sum_probs=137.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhcCccccC--------------------CCC--------
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNW-------ALVLQESADNVSLD--------------------STS-------- 181 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~~~~~~a~--------------------~~~-------- 181 (365)
.+++..|.++|.++++++|+..++|..+ +.++..+++...+. ...
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 3566777777777777777777777777 56666655544330 010
Q ss_pred -------------chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 017806 182 -------------PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (365)
Q Consensus 182 -------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p 248 (365)
....|+|++|.+.|+.++...|++. .++.+|.++.. .++|++|+ ..|+.++...+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~-------~~l~~a~~~~d 166 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVI-------DQVKSAGKWPD 166 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHH-------HHHTTGGGCSC
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHH-------HHHHHhhccCC
Confidence 1234669999999999999999988 99999999999 99999999 66777766432
Q ss_pred C-C-HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 249 N-S-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--FD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 249 ~-~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
. . ..+++++|.++..+|++ ++|+.+|++++... |. ...+++++|.++..+|+.
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~----------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~------------ 224 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALF----------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE------------ 224 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH------------
T ss_pred cccHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH------------
Confidence 2 1 45899999999999996 99999999999654 65 567999999999999976
Q ss_pred CCcchHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 324 VSPNELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 324 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
.++...|.++...+|. ..+..+|.
T Consensus 225 -------deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 225 -------SAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp -------HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred -------HHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 4566777999999999 87777774
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=139.82 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
+++.+|.++...|+ +++|+..|+++++++|++..+|+++|.++.. +|++++|+ ..
T Consensus 8 ~~~~lg~~~~~~g~--------------~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~ 62 (477)
T 1wao_1 8 ELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------GD 62 (477)
T ss_dssp TSSSSSSSTTTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHH-------HH
Confidence 44555666666666 9999999999999999999999999999999 99999999 77
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhhhhhhhhcC
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV--LYGLAEDTLRTGG 317 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~a~~~ 317 (365)
|+++++++|+++.+|+++|.+|..+|++ ++|+..|+++++++|++..++.+++.+ +...|+..++...
T Consensus 63 ~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~ 132 (477)
T 1wao_1 63 ATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 132 (477)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999996 999999999999999999999999999 8888988888776
Q ss_pred cC
Q 017806 318 TV 319 (365)
Q Consensus 318 ~~ 319 (365)
+.
T Consensus 133 ~~ 134 (477)
T 1wao_1 133 DE 134 (477)
T ss_dssp --
T ss_pred cc
Confidence 65
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=127.53 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----------------LCPTLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~~~ 221 (365)
...+..+|.++...|+ |++|+.+|+++++ ++|.+..+|+++|.++..
T Consensus 223 a~~~~~~g~~~~~~g~--------------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--- 285 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQN--------------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK--- 285 (370)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 4568999999999999 9999999999999 788889999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (365)
Q Consensus 222 ~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (365)
+|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+..|+++++++|++..++..+
T Consensus 286 -~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 286 -MSDWQGAV-------DSCLEALEIDPSNTKALYRRAQGWQGLKEY----------DQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp -TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -ccCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999 889999999999999999999999999996 999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhc
Q 017806 302 GTVLYGLAEDTLRTG 316 (365)
Q Consensus 302 g~~~~~~g~~~~a~~ 316 (365)
+.++..+++..++..
T Consensus 348 ~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999997765543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-13 Score=124.72 Aligned_cols=189 Identities=12% Similarity=-0.034 Sum_probs=146.9
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------hhhhhhhHHHHHHHHHHHHHhCCCC------
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------GRSRQRILTFAAKRYANAIERNPED------ 157 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~A~~~~~~al~~~p~~------ 157 (365)
..++..+|.++. ..|++++|+.++++++...+. .+...|++++|+..+++++.+.|..
T Consensus 14 ~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 356777888884 999999999999999887643 2345699999999999999986543
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--------PTLHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
..++.++|.++...|+ +++|+.+|++++.+. |....++.++|.++.. .|++++|
T Consensus 93 ~~~~~~la~~~~~~G~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 154 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGF--------------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEA 154 (373)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHH
Confidence 2347899999999999 999999999999875 3456788899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC--CCHHHHH---
Q 017806 230 EELWKQATKNYEKAVQLNWN-----SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF--DFHRAIY--- 299 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~--- 299 (365)
+ ..+++++.+.+. ...++.++|.++...|++ ++|+.++++++.+.+ .+...+.
T Consensus 155 ~-------~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 155 E-------ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL----------DNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp H-------HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred H-------HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 9 556666666554 356889999999999996 999999999998733 2211121
Q ss_pred --HHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 300 --NLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 300 --~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
.++.++...|+...+......+..
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 344557788888777655444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-14 Score=131.47 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=78.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY-----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~ 196 (365)
++..|++++|+.+|++++.+.|.+. .+|+++|.++..+|+ |++|+.+|+
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~--------------~~~A~~~~~ 254 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR--------------YDEAIGHCN 254 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC--------------CHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHH
Confidence 3455677888888888888777765 489999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhH
Q 017806 197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276 (365)
Q Consensus 197 ~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 276 (365)
++++++|++..+|+++|.++.. +|++++|+ .+|+++++++|++..++.+++.+.......
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~-------~~l~~al~l~p~~~~a~~~L~~l~~~~~~~--------- 314 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAE----LGQMDSAR-------DDFRKAQKYAPDDKAIRRELRALAEQEKAL--------- 314 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHT----TTCHHHHH-------HHHHHTTC-------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999 99999999 889999999999999999999996655443
Q ss_pred HHHHHHHHHHHHHhCCCCHH
Q 017806 277 VRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~ 296 (365)
++++...|.+++...|+++.
T Consensus 315 ~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhCCCCCCCC
Confidence 48999999999999998754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=107.14 Aligned_cols=112 Identities=11% Similarity=0.036 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
.+.++.+||.+++. .|+|++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+..|
T Consensus 7 ~A~a~~~lG~~~~~----~~~~~~A~-------~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYK----QKDFEKAH-------VHYDKAIELDPSNITFYNNKAAVYFEEKKF----------AECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHhHHHHHHHhhhH----------HHHHHHH
Confidence 45678999999999 99999999 789999999999999999999999999996 9999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHH
Q 017806 285 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (365)
Q Consensus 285 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 349 (365)
+++++++|++...+..++.++..+|....+.+. |..+..+|.++....|+...
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~------------~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQND------------LSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCcCHHH
Confidence 999999988755444444444444443333332 36677788888888776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=108.75 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRL---CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
|++++|+.+|++++++ +|+++.+++++|.++.. .|++++|+ ..|+++++++|+++.+++++|.++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAE-------AVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4599999999999999 68999999999999999 99999999 8899999999999999999999999
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
.+|++ ++|+..|++++...|+++.+......+....+
T Consensus 73 ~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 73 NLGRY----------EQGVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHTCH----------HHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99996 99999999999999999887665555544443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=122.66 Aligned_cols=158 Identities=11% Similarity=-0.031 Sum_probs=124.2
Q ss_pred hcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCCC------HHHH
Q 017806 104 SQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPED------YDAL 161 (365)
Q Consensus 104 ~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~~------~~~~ 161 (365)
.....+. ..|++++|+..+++++...+. .+...+++++|+.+|++++.+.+.. ..++
T Consensus 80 ~~i~~~~-~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLC-KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3355563 889999999999999886532 1223369999999999999975443 3479
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~ 234 (365)
.++|.+|..+|+ +++|+.+|++++++ .+....+++++|.++.. +|++++|+.+++
T Consensus 159 ~~lg~~y~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~ 220 (293)
T 3u3w_A 159 NAIANIYAENGY--------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHH
Confidence 999999999999 99999999999953 12245689999999999 999999997666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
+|+...... ...+..+.+++++|.+|..+|+. +++|+.+|++|+.+
T Consensus 221 ~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~---------~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 221 KAIEISCRI-NSMALIGQLYYQRGECLRKLEYE---------EAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHT-TBCTTHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CcHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHH
Confidence 665544331 22233488999999999999953 49999999999976
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=108.04 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIER---NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
.|++++|+.+|++++++ +|++..+++++|.++..+|+ +++|+.+|+++++++|+++.+++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l~ 68 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------------YRKAEAVLANGVKQFPNHQALRVFYA 68 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 57889999999999999 68899999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
.++.. .|++++|+ ..|++++..+|+++.+......+....+
T Consensus 69 ~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 69 MVLYN----LGRYEQGV-------ELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHH----HTCHHHHH-------HHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999 99999999 7799999999999887654444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=107.66 Aligned_cols=119 Identities=16% Similarity=0.037 Sum_probs=101.7
Q ss_pred cCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQE 170 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~ 170 (365)
..+.+...++.+|..++ . .|++++|+.+|+++++.+|++ ..++.++|.++..
T Consensus 23 ~~~~~~~~~~~~a~~~~-~------------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~ 77 (148)
T 2dba_A 23 PGASSVEQLRKEGNELF-K------------------------CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK 77 (148)
T ss_dssp TTCCCHHHHHHHHHHHH-T------------------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-H------------------------hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 34566777888887773 3 455666666677777777766 8899999999999
Q ss_pred hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 171 SADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
.|+ +++|+.+|++++.++|++..+++++|.++.. .|++++|+ .+|+++++++|++
T Consensus 78 ~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~al~~~p~~ 132 (148)
T 2dba_A 78 LED--------------YDKAETEASKAIEKDGGDVKALYRRSQALEK----LGRLDQAV-------LDLQRCVSLEPKN 132 (148)
T ss_dssp TTC--------------HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCSSC
T ss_pred Hcc--------------HHHHHHHHHHHHhhCccCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCc
Confidence 999 9999999999999999999999999999999 99999999 8899999999999
Q ss_pred HHHHHHHHHHHH
Q 017806 251 PQALNNWGLALQ 262 (365)
Q Consensus 251 ~~~~~~lg~~~~ 262 (365)
..++..++.+..
T Consensus 133 ~~~~~~l~~~~~ 144 (148)
T 2dba_A 133 KVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999988887754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-14 Score=132.68 Aligned_cols=121 Identities=21% Similarity=0.114 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----------------DAFYNWAIAI 216 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~ 216 (365)
.+.....++.+|.+++..|+ |++|+.+|++++.+.|++. .+|+++|.++
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~ 240 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEK--------------LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSC--------------CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34456779999999999999 9999999999999999887 4899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
.. +|++++|+ .+|+++++++|+++.+|+++|.+|..+|++ ++|+.+|+++++++|++..
T Consensus 241 ~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~a~~~~g~~----------~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 241 IK----LKRYDEAI-------GHCNIVLTEEEKNPKALFRRGKAKAELGQM----------DSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HT----TTCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHTTC-------
T ss_pred HH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHH
Confidence 99 99999999 789999999999999999999999999996 9999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 017806 297 AIYNLGTVLYGLA 309 (365)
Q Consensus 297 ~~~~lg~~~~~~g 309 (365)
++.+|+.+.....
T Consensus 300 a~~~L~~l~~~~~ 312 (338)
T 2if4_A 300 IRRELRALAEQEK 312 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 9999998855443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-13 Score=123.96 Aligned_cols=182 Identities=14% Similarity=0.001 Sum_probs=142.5
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhC--------CC
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERN--------PE 156 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~--------p~ 156 (365)
++..+|.++. ..|++++|+.++++++.+.+. .+...|++++|+.+|++++++. |.
T Consensus 55 ~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 55 ATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 6788999994 999999999999999987543 2455699999999999999975 34
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
...++.++|.++...|+ +++|+.++++++.+.+. ...++.++|.++.. .|++++|+.
T Consensus 134 ~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 195 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWAR--------------LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARS 195 (373)
T ss_dssp HHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 46678899999999999 99999999999999775 35688999999999 999999995
Q ss_pred HHHHHHHHHHHHHhcC--CCCHHHHH-----HHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC----HHHHHH
Q 017806 232 LWKQATKNYEKAVQLN--WNSPQALN-----NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF----HRAIYN 300 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~--p~~~~~~~-----~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~ 300 (365)
. +++++.+. ++.+..+. .++.++...|++ ++|..++++++...|.. ...+..
T Consensus 196 ~-------l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 196 Q-------LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK----------AAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp H-------HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred H-------HHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH----------HHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 5 55555432 22222222 344557788886 99999999998876643 335678
Q ss_pred HHHHHHHhhhhhhhhcCc
Q 017806 301 LGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 301 lg~~~~~~g~~~~a~~~~ 318 (365)
+|.++...|+..++....
T Consensus 259 la~~~~~~g~~~~A~~~l 276 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVL 276 (373)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 899999888877665543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-13 Score=102.11 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=97.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-------HH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-------HD 207 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 207 (365)
...|++++|+.+|++++..+|.+..+++++|.++...|+ +++|+.+|++++.+.|.+ ..
T Consensus 15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------------YNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHhhccccchhHHHHHH
Confidence 456788999999999999999999999999999999999 999999999999998877 99
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
+++++|.++.. .|++++|+ ..|+++++.+| +...+..++.++..+++.
T Consensus 81 ~~~~la~~~~~----~~~~~~A~-------~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 81 AYARIGNSYFK----EEKYKDAI-------HFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----hccHHHHH-------HHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999 99999999 77899999998 689999999988877653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-13 Score=100.44 Aligned_cols=106 Identities=19% Similarity=0.137 Sum_probs=94.4
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN 174 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 174 (365)
+|+++.+++.+|.++ ...|++++|+.+|+++++.+|.+..+++++|.++...|+
T Consensus 2 ~p~~~~~~~~~~~~~-------------------------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~- 55 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQ-------------------------YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER- 55 (112)
T ss_dssp CCSSTTGGGGHHHHH-------------------------HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-
T ss_pred CCCcHHHHHHHHHHH-------------------------HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-
Confidence 466666777777666 345678888888899999999999999999999999999
Q ss_pred cccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 175 VSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 175 ~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~-g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
+++|+.+|+++++++|. +..+++++|.++.. . |++++|+ +.+++++..+|.+
T Consensus 56 -------------~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~-------~~~~~~~~~~p~~ 110 (112)
T 2kck_A 56 -------------YEEAVDCYNYVINVIEDEYNKDVWAAKADALRY----IEGKEVEAE-------IAEARAKLEHHHH 110 (112)
T ss_dssp -------------HHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT----CSSCSHHHH-------HHHHHHGGGCCCC
T ss_pred -------------HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH----HhCCHHHHH-------HHHHHHhhcccCC
Confidence 99999999999999999 99999999999999 9 9999999 7899999998875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-12 Score=98.35 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=95.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---HH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HD 207 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 207 (365)
++..|++++|+..|+++++.+|++. .+++.+|.++...|+ +++|+.+|++++..+|++ +.
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~ 77 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--------------FQLAEAQFRDLVSRYPTHDKAAG 77 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTSTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHCCCCcccHH
Confidence 3566889999999999999999988 899999999999999 999999999999999999 89
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+++.+|.++.. .|++++|+ ..|++++..+|++..+...+..+-.-.+
T Consensus 78 ~~~~la~~~~~----~g~~~~A~-------~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 78 GLLKLGLSQYG----EGKNTEAQ-------QTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999 99999999 7799999999999887776665554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=109.08 Aligned_cols=153 Identities=9% Similarity=0.032 Sum_probs=116.6
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh------CCCCHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL------CPTLHDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~ 208 (365)
+..|++++|+..++......+....++..+|.++...|+ +++|+.+|++++.+ .+....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDR--------------FDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345788888885554444333678899999999999999 99999999999994 4456788
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
+.++|.++.. .|++++|+..+++|+..++. ...++ ....+++++|.++..+|++ ++|+.+|+++
T Consensus 69 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~a 133 (203)
T 3gw4_A 69 LHQVGMVERM----AGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDL----------AGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHH
Confidence 9999999999 99999999777666666542 11022 3467899999999999996 9999999999
Q ss_pred HHhCC--CC----HHHHHHHHHHHHHhhhhhhhhc
Q 017806 288 IQLQF--DF----HRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 288 l~~~p--~~----~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
+.+.+ .+ ..++.++|.++...|+...+..
T Consensus 134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 97632 22 3456899999999997764443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=120.78 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=100.9
Q ss_pred hhhhhhhHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIE----------------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~ 196 (365)
.++..|++++|+.+|+++++ ++|.+..+|.++|.++..+|+ +++|+.+|+
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------~~~A~~~~~ 297 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------------WQGAVDSCL 297 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------------HHHHHHHHH
Confidence 34556777777777777777 788889999999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 017806 197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (365)
Q Consensus 197 ~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 267 (365)
++++++|+++.+++++|.++.. +|++++|+ ..|+++++++|++..++..++.++..+++.
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~-------~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQG----LKEYDQAL-------ADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999 889999999999999999999999999885
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=127.17 Aligned_cols=213 Identities=14% Similarity=0.034 Sum_probs=145.9
Q ss_pred cCCChhHhhhcHHHHHHHHHHhhccChh--hhh-hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCC
Q 017806 105 QGNTPHQLAEQNNAAMELINSVTGVDEE--GRS-RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (365)
Q Consensus 105 ~g~~~~~~~g~~~~A~~~~~~al~~~~~--~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~ 181 (365)
.|.++ ...|.+++|...|+++-..... .+. ..+++++|+++++++ +.+.+|+.+|.++...|+
T Consensus 1055 IA~Ia-i~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~-------- 1120 (1630)
T 1xi4_A 1055 IANIA-ISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGM-------- 1120 (1630)
T ss_pred HHHHH-HhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC--------
Confidence 38888 5999999999999998633321 222 347788888777755 679999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------H
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK----------------------N 239 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~----------------------~ 239 (365)
+++|+.+|.++ +++..|..+|.++.+ .|+|++|+++|..|++ .
T Consensus 1121 ------~kEAIdsYiKA-----dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1121 ------VKEAIDSYIKA-----DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred ------HHHHHHHHHhc-----CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH
Confidence 99999999886 889999999999999 9999999988866542 1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH----------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPARE----------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
++..+ +..+...|.++|..+...|+++.|.. +.|+|++|++++++| .+..+|...+.
T Consensus 1186 le~fI--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1186 LEEFI--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCF 1258 (1630)
T ss_pred HHHHH--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 22222 22344566678888888888755554 556677777777776 45577777777
Q ss_pred HHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 304 VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
++...|+...|...... +...+.. +..+..+|...+.++.....++.+++
T Consensus 1259 acve~~Ef~LA~~cgl~-Iiv~~de-Leeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-IVVHADE-LEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-hhcCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77776666666554332 3233332 22333333444444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-12 Score=106.80 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=106.2
Q ss_pred hhhhhHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh---CCC-
Q 017806 135 SRQRILTFAAKRYANAIE------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---CPT- 204 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~---~p~- 204 (365)
...|++++|+.+|++++. ..+....++.++|.++...|+ +++|+.+|++++.+ .++
T Consensus 37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------------WDAARRCFLEERELLASLPED 102 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHcCcc
Confidence 444666777777777766 334557789999999999999 99999999999998 442
Q ss_pred ---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHH
Q 017806 205 ---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (365)
Q Consensus 205 ---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~ 281 (365)
...++.++|.++.. .|++++|+..+++|+...+.. ........++.++|.++...|++ ++|+
T Consensus 103 ~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~----------~~A~ 167 (203)
T 3gw4_A 103 PLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQA-DDQVAIACAFRGLGDLAQQEKNL----------LEAQ 167 (203)
T ss_dssp HHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHCcCH----------HHHH
Confidence 35679999999999 999999997777766654331 00011245678999999999996 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 282 SKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 282 ~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
.+|++++++...... ....+.++..++
T Consensus 168 ~~~~~al~~~~~~~~-~~~~~~~~~~~~ 194 (203)
T 3gw4_A 168 QHWLRARDIFAELED-SEAVNELMTRLN 194 (203)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHhccc
Confidence 999999988432211 123444444444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-12 Score=95.19 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch
Q 017806 190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP 269 (365)
Q Consensus 190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 269 (365)
+|+..|+++++.+|+++.+++++|.++.. .|++++|+ ..|+++++++|++..+|+++|.+|...|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~la~~~~~~g~~-- 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAAL-------PHLRAALDFDPTYSVAWKWLGKTLQGQGDR-- 69 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCH--
Confidence 57899999999999999999999999999 99999999 779999999999999999999999999996
Q ss_pred hHHhhhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhhhh
Q 017806 270 AREKQTIVRTAISKFRAAIQLQF--DFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~ 312 (365)
++|+..|++++.++| .+......+...+..+++..
T Consensus 70 --------~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 70 --------AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcccc
Confidence 999999999999987 45677778888887777543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=94.34 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 017806 142 FAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 142 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 221 (365)
.|+..|+++++.+|+++.+++++|.++...|+ +++|+.+|++++.++|++..+|+++|.++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 65 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------------FDAALPHLRAALDFDPTYSVAWKWLGKTLQG--- 65 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---
Confidence 57899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcC
Q 017806 222 MRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSA 266 (365)
Q Consensus 222 ~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~ 266 (365)
.|++++|+ ..|+++++++|. +......+...+..+++
T Consensus 66 -~g~~~~A~-------~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 66 -QGDRAGAR-------QAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp -HTCHHHHH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHH-------HHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 99999999 667777776663 45666666666666655
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=97.50 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
+..+++.+|.++...|+ +++|+.+|+++++++|+++.+++++|.++.. .|++++|+
T Consensus 3 ~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~------ 58 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL--------------YREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAI------ 58 (111)
T ss_dssp HHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred hHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHH------
Confidence 46789999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCc
Q 017806 237 TKNYEKAVQLNWNS------PQALNNWGLALQELSAI 267 (365)
Q Consensus 237 ~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~ 267 (365)
..|+++++++|++ ..+++++|.++..+|++
T Consensus 59 -~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 59 -QMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp -HHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999 99999999999999987
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=88.13 Aligned_cols=85 Identities=32% Similarity=0.411 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~ 235 (365)
.+..+++.+|.++...|+ +++|+.+|++++.++|++..+++++|.++.. .|++++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~----- 63 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGD--------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAI----- 63 (91)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-----
T ss_pred ccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHH-----
Confidence 457889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 236 ATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 236 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
..|+++++++|+++.++.++|.++...|
T Consensus 64 --~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 64 --EYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 7899999999999999999999998765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-10 Score=120.26 Aligned_cols=189 Identities=13% Similarity=0.044 Sum_probs=123.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
....+.+.+|+.+|..+ ...|++++|++.|.++ .++. ++...|++++|+++|..+.+..++. .+...+|
T Consensus 1099 Aervn~p~vWsqLAKAq-l~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~La 1174 (1630)
T 1xi4_A 1099 AERCNEPAVWSQLAKAQ-LQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELI 1174 (1630)
T ss_pred HHhcCCHHHHHHHHHHH-HhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHH
Confidence 34567799999999999 6999999999999987 3333 3455699999999999988766431 1122344
Q ss_pred HHHHHhcCcccc--------------CCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 166 LVLQESADNVSL--------------DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 166 ~~~~~~~~~~~a--------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.+|.++++.... .|......|+|++|+.+|.++ ..|..+|.++.+ +|++++|++
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk----Lge~q~AIE 1242 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH----LGEYQAAVD 1242 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH----hCCHHHHHH
Confidence 444444331000 111111112277777777765 367777777777 777777774
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH--------------------hhhHHHHHHHHHHHHHHhC
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE--------------------KQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~--------------------~~~~~~~A~~~~~~al~~~ 291 (365)
. +++| ++..+|...+.++...|++..|.. +.|.|++|+.+|++++.++
T Consensus 1243 a-------arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1243 G-------ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred H-------HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4 4444 334555544444443333322221 4455799999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 017806 292 FDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 292 p~~~~~~~~lg~~~~~~g 309 (365)
+.+...+..||.++.+-.
T Consensus 1311 raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred hhHhHHHHHHHHHHHhCC
Confidence 999999999999988655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.2e-12 Score=99.86 Aligned_cols=147 Identities=14% Similarity=0.016 Sum_probs=108.8
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccC
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
..++..+|.++. ..|++++|+.+|++++...+... +. .....++.++|.++...|+
T Consensus 9 ~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~----~~--------------~~~~~~~~~l~~~~~~~g~----- 64 (164)
T 3ro3_A 9 GRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFG----DK--------------AAERIAYSNLGNAYIFLGE----- 64 (164)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHT----CH--------------HHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhC----Cc--------------hHHHHHHHHHHHHHHHcCC-----
Confidence 355677777773 66666666666666554432210 00 0113578999999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
+++|+.+|++++.+.+.. ..++.++|.++.. .|++++|+..+++++...... ...+....
T Consensus 65 ---------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~ 130 (164)
T 3ro3_A 65 ---------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQEL-KDRIGEGR 130 (164)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHc-cchHhHHH
Confidence 999999999999986543 6789999999999 999999997777776655432 11123467
Q ss_pred HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 253 ~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
++.++|.++...|++ ++|+.+|++++++...
T Consensus 131 ~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 131 ACWSLGNAYTALGNH----------DQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHH
Confidence 899999999999996 9999999999987543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=92.31 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
++..++.+|.++.. .|++++|+ ..|+++++++|+++.+|+++|.++..+|++ ++|+..|
T Consensus 3 ~~~~~~~~g~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK----QGLYREAV-------HCYDQLITAQPQNPVGYSNKAMALIKLGEY----------TQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHH
Confidence 46789999999999 99999999 779999999999999999999999999996 9999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 285 RAAIQLQFDF------HRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 285 ~~al~~~p~~------~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
++++.++|++ ..+++.+|.++..+|+...+...+
T Consensus 62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 9999999999 999999999999999777666544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-11 Score=87.72 Aligned_cols=85 Identities=28% Similarity=0.325 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHH
Q 017806 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (365)
Q Consensus 204 ~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (365)
.++.+++.+|.++.. .|++++|+ .+|+++++.+|+++.+++++|.++...|++ ++|+.+
T Consensus 7 ~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~ 65 (91)
T 1na3_A 7 NSAEAWYNLGNAYYK----QGDYDEAI-------EYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHH
T ss_pred ccHHHHHHHHHHHHH----ccCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHHHhhH----------HHHHHH
Confidence 467899999999999 99999999 779999999999999999999999999996 999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 284 FRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 284 ~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
|++++.++|+++.++.++|.++...|
T Consensus 66 ~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999998764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=121.46 Aligned_cols=200 Identities=14% Similarity=0.038 Sum_probs=82.1
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 169 (365)
+++.+|+.+|..+. ..|++++|++.|.++- ++. .....|++++|+.+++.+++..++ +.+...++.+|.
T Consensus 30 ~~~~vWs~La~A~l-~~g~~~eAIdsfika~--D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQL-QKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHH-HcCCHHHHHHHHHcCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 44579999999994 9999999999998863 333 234459999999999999986444 777889999999
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
++|+ +.+++++++. | +..+|.++|..+.. .|+|++|+ ..|.++
T Consensus 106 Klg~--------------l~e~e~f~~~-----p-n~~a~~~IGd~~~~----~g~yeeA~-------~~Y~~a------ 148 (449)
T 1b89_A 106 KTNR--------------LAELEEFING-----P-NNAHIQQVGDRCYD----EKMYDAAK-------LLYNNV------ 148 (449)
T ss_dssp ---C--------------HHHHTTTTTC-----C---------------------CTTTHH-------HHHHHT------
T ss_pred HhCC--------------HHHHHHHHcC-----C-cHHHHHHHHHHHHH----cCCHHHHH-------HHHHHh------
Confidence 9999 9998888853 4 44699999999999 99999999 556654
Q ss_pred CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchH
Q 017806 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNEL 329 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (365)
..|..+|.++.++|++ ++|++.|+++ +++.+|..++.++...|++..+...... +...|...
T Consensus 149 --~n~~~LA~~L~~Lg~y----------q~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l 210 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEY----------QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL 210 (449)
T ss_dssp --TCHHHHHHHHHTTTCH----------HHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHH
T ss_pred --hhHHHHHHHHHHhccH----------HHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhH
Confidence 5789999999999996 9999999999 5789999999999999999888766553 44555542
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHh
Q 017806 330 YSQSAIYIAAAHALKPSYSVYSSALRL 356 (365)
Q Consensus 330 ~~~a~~~~~~a~~~~~~~~~~~~al~~ 356 (365)
. .+..+|.+++..+.....++.++++
T Consensus 211 ~-~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 211 E-ELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred H-HHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 2 2333445555554444555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-11 Score=94.65 Aligned_cols=127 Identities=16% Similarity=0.090 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..++..+|.++...|+ +++|+.+|++++.+.+.. ..++.++|.++.. .|++++|+.
T Consensus 9 ~~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 70 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN--------------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASE 70 (164)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 5678999999999999 999999999999986542 2589999999999 999999997
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Q 017806 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD------FHRAIYNLGTVL 305 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~ 305 (365)
.+++|+..+... ...+....++.++|.++...|++ ++|+.+|++++.+.+. ...++.++|.++
T Consensus 71 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 71 YYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 777666655442 11111367899999999999996 9999999999987422 256788899999
Q ss_pred HHhhhhhh
Q 017806 306 YGLAEDTL 313 (365)
Q Consensus 306 ~~~g~~~~ 313 (365)
...|+...
T Consensus 140 ~~~g~~~~ 147 (164)
T 3ro3_A 140 TALGNHDQ 147 (164)
T ss_dssp HHHTCHHH
T ss_pred HHccCHHH
Confidence 99886653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=115.25 Aligned_cols=168 Identities=12% Similarity=0.074 Sum_probs=88.0
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALV 167 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 167 (365)
.++.++...+..+ ...|++++|+.+++.++...+. ++.+.|++.++.++++ .| +..+|..+|..
T Consensus 59 ~D~~~y~~V~~~a-e~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~ 131 (449)
T 1b89_A 59 DDPSSYMEVVQAA-NTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDR 131 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-----CC------------
T ss_pred CCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHH
Confidence 4667889999999 6999999999999999875322 5666788988888775 24 34589999999
Q ss_pred HHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 168 LQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
++..|+ |++|+.+|.++ ..|..+|.++.. +|++++|+ +.|+++
T Consensus 132 ~~~~g~--------------yeeA~~~Y~~a--------~n~~~LA~~L~~----Lg~yq~AV-------ea~~KA---- 174 (449)
T 1b89_A 132 CYDEKM--------------YDAAKLLYNNV--------SNFGRLASTLVH----LGEYQAAV-------DGARKA---- 174 (449)
T ss_dssp -----C--------------TTTHHHHHHHT--------TCHHHHHHHHHT----TTCHHHHH-------HHHHHH----
T ss_pred HHHcCC--------------HHHHHHHHHHh--------hhHHHHHHHHHH----hccHHHHH-------HHHHHc----
Confidence 999999 88888888876 468888888888 88888888 556665
Q ss_pred CCCHHHHHHHHHHHHHhcCcchhHH--------------------hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 248 WNSPQALNNWGLALQELSAIVPARE--------------------KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 248 p~~~~~~~~lg~~~~~~~~~~~~~~--------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+++.+|...+.++...|++..|.. +.|.+++|+.++++++.+++.+..++..||.+|.+
T Consensus 175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred -CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 366777777777777776554432 56778999999999999999999999999999976
Q ss_pred hh
Q 017806 308 LA 309 (365)
Q Consensus 308 ~g 309 (365)
-.
T Consensus 254 y~ 255 (449)
T 1b89_A 254 FK 255 (449)
T ss_dssp TC
T ss_pred cC
Confidence 54
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-10 Score=101.08 Aligned_cols=160 Identities=12% Similarity=-0.033 Sum_probs=127.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC----CHHH
Q 017806 135 SRQRILTFAAKRYANAIERNP--EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDA 208 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~ 208 (365)
...|++++|++.+.+++..+| ++.+++..++.++..+|+ .+.|.+.+++..+.+|+ +-.+
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--------------~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--------------VSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhcCccccccchHH
Confidence 445778888888888888886 888999999999999999 99999999999999993 2344
Q ss_pred HHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHH
Q 017806 209 FYNWAIA--ISDRAKMRG--RTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (365)
Q Consensus 209 ~~~lg~~--~~~~~~~~g--~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~ 282 (365)
...|+.+ ... .| ++.+|. ..|+++.+..|+ ....+++ ++..+|++ ++|.+
T Consensus 177 l~~Laea~v~l~----~g~~~~q~A~-------~~f~El~~~~p~~~~~~lLln---~~~~~g~~----------~eAe~ 232 (310)
T 3mv2_B 177 ILNLAESYIKFA----TNKETATSNF-------YYYEELSQTFPTWKTQLGLLN---LHLQQRNI----------AEAQG 232 (310)
T ss_dssp HHHHHHHHHHHH----HTCSTTTHHH-------HHHHHHHTTSCSHHHHHHHHH---HHHHHTCH----------HHHHH
T ss_pred HHHHHHHHHHHH----hCCccHHHHH-------HHHHHHHHhCCCcccHHHHHH---HHHHcCCH----------HHHHH
Confidence 4555444 555 55 899998 779998887776 2334444 89999996 99999
Q ss_pred HHHHHHHh----------CCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHH
Q 017806 283 KFRAAIQL----------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (365)
Q Consensus 283 ~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 352 (365)
.++++++. +|+++.++.|+..+...+|+ .+..++.++...+|+.+....
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---------------------~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL---------------------DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---------------------TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh---------------------HHHHHHHHHHHhCCCChHHHH
Confidence 99988876 58999999999999999985 145677888888888765544
Q ss_pred H
Q 017806 353 A 353 (365)
Q Consensus 353 a 353 (365)
-
T Consensus 292 ~ 292 (310)
T 3mv2_B 292 H 292 (310)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=86.06 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=77.9
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHH
Q 017806 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (365)
Q Consensus 201 ~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A 280 (365)
.+|+++.+++++|.++.. .|++++|+ ..|+++++++|+++.+|+++|.+|..+|++ ++|
T Consensus 2 ~~p~~~~~~~~lg~~~~~----~g~~~~A~-------~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A 60 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK----HDNASRAL-------ALFEELVETDPDYVGTYYHLGKLYERLDRT----------DDA 60 (100)
T ss_dssp ---CCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHH
T ss_pred CCccCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHH
Confidence 479999999999999999 99999999 889999999999999999999999999996 999
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHhhhh
Q 017806 281 ISKFRAAIQLQF--DFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 281 ~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~ 311 (365)
+..|++++++.| .+......+..++...+..
T Consensus 61 ~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHcccc
Confidence 999999999876 4566677777777766643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-10 Score=85.40 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=73.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017806 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (365)
Q Consensus 153 ~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~ 232 (365)
.+|+++.+++.+|.++...|+ +++|+.+|+++++++|+++.+|+++|.++.. .|++++|+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~-- 61 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDN--------------ASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAI-- 61 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHH--
T ss_pred CCccCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHH--
Confidence 479999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcC
Q 017806 233 WKQATKNYEKAVQLNWN--SPQALNNWGLALQELSA 266 (365)
Q Consensus 233 ~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~ 266 (365)
..|++++++.|+ +......+..++...+.
T Consensus 62 -----~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 62 -----DTYAQGIEVAREEGTQKDLSELQDAKLKAEG 92 (100)
T ss_dssp -----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHhhhhcCCchhHHHHHHHHHHHccc
Confidence 556666666543 45555556666655554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.2e-11 Score=86.81 Aligned_cols=92 Identities=24% Similarity=0.294 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.+.+|.++...|+ +++|+..|+++++++|+++. +++++|.++.. .|++++|+ ..
T Consensus 3 ~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~-------~~ 57 (99)
T 2kc7_A 3 QLKTIKELINQGD--------------IENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKAL-------NN 57 (99)
T ss_dssp THHHHHHHHHHTC--------------HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHH-------HH
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHH-------HH
Confidence 3678999999999 99999999999999999999 99999999999 99999999 88
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
|+++++++|++..++.+ +. +.+++.+|++++..+|++.
T Consensus 58 ~~~al~~~p~~~~~~~~--------~~----------~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 58 YQSAIELNPDSPALQAR--------KM----------VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHCTTSTHHHHH--------HH----------HHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHhcCCCcHHHHHH--------HH----------HHHHHHHHHHHhccCcccc
Confidence 99999999999998855 34 3888999999888887653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=107.85 Aligned_cols=185 Identities=9% Similarity=-0.062 Sum_probs=133.6
Q ss_pred HHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------hhhhhhhHHHHHHHHHHHHHh
Q 017806 101 ASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------------------GRSRQRILTFAAKRYANAIER 153 (365)
Q Consensus 101 a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------------------~~~~~~~~~~A~~~~~~al~~ 153 (365)
+....|..+. ..|++++|++.|.+++...+. .+...|++++|+++|.+++..
T Consensus 6 ~~l~~a~~l~-~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 6 SKLEEARRLV-NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344444452 677777777777777766543 245669999999999999987
Q ss_pred CCCCHH------HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHH
Q 017806 154 NPEDYD------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP------TLHDAFYNWAIAISDRAK 221 (365)
Q Consensus 154 ~p~~~~------~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~ 221 (365)
.+.... +...+|.++...|+ +++|+.++++++.+.+ ....++.+||.++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 147 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDS--------------LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ--- 147 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSC--------------HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH---
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH---
Confidence 665432 45667788777788 9999999999988633 347789999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC---C----
Q 017806 222 MRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD---F---- 294 (365)
Q Consensus 222 ~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~---- 294 (365)
.|+|.+|+..+++++..+.+. ...+....++.++|.+|..+|++ ++|..+|++++...+. .
T Consensus 148 -~g~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 148 -KKQYKDSLALINDLLREFKKL-DDKPSLVDVHLLESKVYHKLRNL----------AKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp -HTCHHHHHHHHHHHHHHHTTS-SCSTHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred -ccChHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHhhcCCCchHHH
Confidence 999999997766655443321 12344578999999999999996 9999999999987432 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 017806 295 HRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 295 ~~~~~~lg~~~~~~g~~~~a~ 315 (365)
...+..+|.++...++...+.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 234555555555555554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-09 Score=86.23 Aligned_cols=127 Identities=18% Similarity=0.136 Sum_probs=103.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (365)
..+++++|+.+|+++.+.+.. .+. +|.+|...+. +++|+.+|+++.+. .++.++++||.+
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~--------------~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 66 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQIN--------------KQKLFQYLSKACEL--NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCC--------------HHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 357899999999999998744 444 9999998888 89999999999987 689999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
|..-.-..+++++|+ .+|+++.+. .++.+++++|.+|.. .+++ ++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~-------~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~----------~~A~~~~~~Aa~~- 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAA-------QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE----------KQAVKTFEKACRL- 126 (138)
T ss_dssp HHHCSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT-
T ss_pred HHcCCCCCccHHHHH-------HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCH----------HHHHHHHHHHHHC-
Confidence 975000036778888 778888876 789999999999999 7775 9999999999987
Q ss_pred CCCHHHHHHHHH
Q 017806 292 FDFHRAIYNLGT 303 (365)
Q Consensus 292 p~~~~~~~~lg~ 303 (365)
.++.+..+|+.
T Consensus 127 -g~~~A~~~l~~ 137 (138)
T 1klx_A 127 -GSEDACGILNN 137 (138)
T ss_dssp -TCHHHHHHC--
T ss_pred -CCHHHHHHHhh
Confidence 46677776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=108.26 Aligned_cols=129 Identities=11% Similarity=-0.066 Sum_probs=107.8
Q ss_pred hhhhhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----
Q 017806 135 SRQRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----- 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----- 201 (365)
..+|+|++|+..|++++++ .|++ ..++.+||.+|..+|+ |++|+.+|++++.+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA--------------YEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHS
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHHc
Confidence 4568899999999999985 3444 5678999999999999 99999999999987
Q ss_pred CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 202 CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 202 ~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
.|++ ...+++||.+|.. +|++++|+.+|++|+..+++.+.-+ |.......+++.++..++.+
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~---------- 451 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWH----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF---------- 451 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH----------
T ss_pred CCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH----------
Confidence 3444 5679999999999 9999999999999999999876432 33456677889999888885
Q ss_pred HHHHHHHHHHHHhC
Q 017806 278 RTAISKFRAAIQLQ 291 (365)
Q Consensus 278 ~~A~~~~~~al~~~ 291 (365)
++|...|+++.+..
T Consensus 452 ~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 452 RQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999986543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-09 Score=96.38 Aligned_cols=132 Identities=16% Similarity=0.066 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
.++.+|+.+|+++++++|+++.+|..++.++....... ............+... ..++..+|.++.++..++.++.
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~---~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l 288 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH---PLDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSAL 288 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC---CCchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHH
Confidence 56899999999999999999999999999987533200 0011111112223331 1234668999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
. .|++++|+ ..+++|+.++|+ ..+|..+|.++...|++ ++|++.|.+|+.++|...
T Consensus 289 ~----~gd~d~A~-------~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~----------~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 289 V----KGKTDESY-------QAINTGIDLEMS-WLNYVLLGKVYEMKGMN----------REAADAYLTAFNLRPGAN 344 (372)
T ss_dssp H----HTCHHHHH-------HHHHHHHHHCCC-HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCSHH
T ss_pred h----CCCHHHHH-------HHHHHHHhcCCC-HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCcC
Confidence 9 99999999 889999999974 78889999999999996 999999999999999864
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.9e-10 Score=104.97 Aligned_cols=155 Identities=3% Similarity=-0.063 Sum_probs=127.9
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDY-----------------DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~ 197 (365)
...|+|++|++.|.++++.+|... .++.++|.+|...|+ +++|+++|.+
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------------~~~a~~~~~~ 80 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------------KDKLREFIPH 80 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------------HHHHHHHHHH
Confidence 456899999999999999988653 368899999999999 9999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH
Q 017806 198 ATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (365)
Q Consensus 198 al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 271 (365)
++.+.+.. ..+...+|.++.. .|+++.|+.++++++..... ....+....++.++|.+|...|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~---- 151 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKR-EKRVFLKHSLSIKLATLHYQKKQY---- 151 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHH-SSCCSSHHHHHHHHHHHHHHHTCH----
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHccCh----
Confidence 99886553 2356778888888 99999999888777776554 233445578999999999999996
Q ss_pred HhhhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhhhhhhhcCc
Q 017806 272 EKQTIVRTAISKFRAAIQL------QFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 318 (365)
.+|+..+++++.. .+....++.++|.++..+|+..++...+
T Consensus 152 ------~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 152 ------KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp ------HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 9999999999876 3444789999999999999888776554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-09 Score=93.77 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=101.4
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhc-----C
Q 017806 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMR-----G 224 (365)
Q Consensus 152 ~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~-----g 224 (365)
+.+|++++++++.|.+....-. +........+....|...++++++++|+ +..+|..||.+|.. . |
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~---~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~----vPp~~gG 218 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFA---LTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA----APESFGG 218 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHT---TSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH----SCTTTTC
T ss_pred HcCccccHHHHHHHHHHHHHHh---cCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh----CCCccCC
Confidence 3578899999999998866311 2233455677899999999999999999 67799999999988 8 9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHh-cCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 225 RTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQEL-SAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 225 ~~~~A~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
+.+.|. ++|++|++++|+. ..+++.+|..+... |+. ++|.+++++|+..+|.
T Consensus 219 d~ekA~-------~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~----------~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 219 GMEKAH-------TAFEHLTRYCSAHDPDHHITYADALCIPLNNR----------AGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHH-------HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH----------HHHHHHHHHHHHCCGG
T ss_pred CHHHHH-------HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH----------HHHHHHHHHHHcCCCC
Confidence 999999 8899999999975 99999999999885 885 9999999999999876
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-09 Score=93.07 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=131.4
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccCh--h----------hhhhhhhHHHHHHHHHHHHHhCCC----CHH
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDE--E----------GRSRQRILTFAAKRYANAIERNPE----DYD 159 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~--~----------~~~~~~~~~~A~~~~~~al~~~p~----~~~ 159 (365)
+....+++.+|.++ ...|++++|+.++.+++..++ . .+...|+.+.|.+.+++..+.+|+ +-.
T Consensus 97 ~~~~~~~~~la~i~-~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~ 175 (310)
T 3mv2_B 97 QNSPYELYLLATAQ-AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE 175 (310)
T ss_dssp CCCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCcHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH
Confidence 45566778999999 599999999999999988775 2 356679999999999999999993 233
Q ss_pred HHHHH--HHHHHHhc--CccccCCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 160 ALYNW--ALVLQESA--DNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 160 ~~~~l--g~~~~~~~--~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
.+..+ |++....| + +.+|...|+++.+..|+ ....+++ ++.. +|++++|.
T Consensus 176 ~l~~Laea~v~l~~g~~~--------------~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe--- 231 (310)
T 3mv2_B 176 MILNLAESYIKFATNKET--------------ATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQ--- 231 (310)
T ss_dssp HHHHHHHHHHHHHHTCST--------------TTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHH---
T ss_pred HHHHHHHHHHHHHhCCcc--------------HHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHH---
Confidence 34444 55566666 6 99999999999998887 3444444 7888 99999999
Q ss_pred HHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 234 KQATKNYEKAVQL----------NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (365)
Q Consensus 234 ~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (365)
..++.+++. +|+++.++.|+..+...+|+ +|.++++++.+.+|+++.+..
T Consensus 232 ----~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk------------~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 232 ----GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL------------DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp ----HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC------------TTHHHHHHHHHTTCCCHHHHH
T ss_pred ----HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh------------HHHHHHHHHHHhCCCChHHHH
Confidence 557666655 58999999999999999885 567999999999999987654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=101.01 Aligned_cols=112 Identities=14% Similarity=-0.057 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 017806 188 LEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWG 258 (365)
Q Consensus 188 ~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 258 (365)
|++|+..|++++++ .|++ ...+++||.+|.. +|+|++|+.++++|+..+++.+--+ |+-+..+++||
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999987 3444 5679999999999 9999999999999999998876432 44567899999
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhhhhhh
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFH---RAIYNLGTVLYGLAEDTL 313 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~ 313 (365)
.+|..+|++ ++|+.+|++|+.+ .|+++ ....+|+.++..++....
T Consensus 401 ~~~~~~G~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 401 LTNWHAGHI----------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCH----------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 9999999999976 56665 456678888888775543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-07 Score=86.87 Aligned_cols=161 Identities=14% Similarity=0.032 Sum_probs=117.5
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCH
Q 017806 149 NAIERNPEDYDAL--YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 149 ~al~~~p~~~~~~--~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
++...-|.+..+| +..|..+...++ ...+.+|+.+|++|++++|+++.+|..++.++..+.-..+..
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~-----------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~ 253 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGD-----------DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD 253 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCc
Confidence 3445567776654 556666665543 223799999999999999999999999999886522212122
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 227 KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
......+..++... .++..+|.++.++..++..+...|++ ++|+..+++|+.++|+ +.+|..+|.++.
T Consensus 254 ~~~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd~----------d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 254 EKQLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVKGKT----------DESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp HHHHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 22233333343421 34577899999999999999999996 9999999999999975 788899999999
Q ss_pred HhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHH
Q 017806 307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (365)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 351 (365)
..|+.. .+...|.+|..++|....|.
T Consensus 322 ~~G~~~-------------------eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 322 MKGMNR-------------------EAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HTTCHH-------------------HHHHHHHHHHHHSCSHHHHH
T ss_pred HCCCHH-------------------HHHHHHHHHHhcCCCcChHH
Confidence 999764 45556678888888776543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-08 Score=74.75 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
.+.+|.++.. .|++++|+ ..|+++++.+|+++. +|+++|.+|..+|++ ++|+.+|+++
T Consensus 3 ~~~~a~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~a 61 (99)
T 2kc7_A 3 QLKTIKELIN----QGDIENAL-------QALEEFLQTEPVGKDEAYYLMGNAYRKLGDW----------QKALNNYQSA 61 (99)
T ss_dssp THHHHHHHHH----HTCHHHHH-------HHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence 3578889999 99999999 779999999999999 999999999999996 9999999999
Q ss_pred HHhCCCCHHHH--HHHHHHHH
Q 017806 288 IQLQFDFHRAI--YNLGTVLY 306 (365)
Q Consensus 288 l~~~p~~~~~~--~~lg~~~~ 306 (365)
+.++|++..++ ..++.++.
T Consensus 62 l~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 62 IELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp HHHCTTSTHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHH
Confidence 99999999888 44444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.9e-08 Score=96.17 Aligned_cols=184 Identities=12% Similarity=0.034 Sum_probs=149.5
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHH-HHHHHhhccChhh----------hhhhhhHHHHHHHHHHHHHhC------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAM-ELINSVTGVDEEG----------RSRQRILTFAAKRYANAIERN------ 154 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~-~~~~~al~~~~~~----------~~~~~~~~~A~~~~~~al~~~------ 154 (365)
+...|..+..|+..+..+ ...|+.++|+ ..|.+|+...|.. ....|+++.|...|++++...
T Consensus 336 L~~~p~~~~lW~~ya~~~-~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 336 AQHVCFAPEIWFNMANYQ-GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHHTTTCHHHHHHHHHHH-HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 567889999999999988 5889999997 9999999988762 123489999999999999752
Q ss_pred -----CC-----------CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 017806 155 -----PE-----------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLHDAFYNWAIAIS 217 (365)
Q Consensus 155 -----p~-----------~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~ 217 (365)
|. ...+|...+.+....|. .+.|...|.+|++. .+....+|...+.+..
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--------------l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--------------LAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 53 34578888888888888 99999999999998 5556778887777776
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC---
Q 017806 218 DRAKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD--- 293 (365)
Q Consensus 218 ~~~~~~g~-~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 293 (365)
. .++ ++.|. +.|+++++..|+++..|..++......|+. +.|..+|++|+...|+
T Consensus 481 ~----~~~d~e~Ar-------~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~----------~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 481 H----ISKDTKTAC-------KVLELGLKYFATDGEYINKYLDFLIYVNEE----------SQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp T----TTSCCHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHTTTSSSTTH
T ss_pred H----hCCCHHHHH-------HHHHHHHHHCCCchHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHhcCCHHH
Confidence 6 654 88998 778888888899999999999999999996 9999999999999883
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 017806 294 FHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~~ 311 (365)
...+|......-...|+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHcCCH
Confidence 345566565555556644
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-08 Score=77.47 Aligned_cols=109 Identities=9% Similarity=0.001 Sum_probs=93.7
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG---RTKEAEELWKQATKNYEKAVQLN-W-NSPQALN 255 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g---~~~~A~~~~~~A~~~~~~al~~~-p-~~~~~~~ 255 (365)
.....+....+...|.+.+..++.+.++.+++|.++.+ .+ +..+++ ..++..++.+ | +..++++
T Consensus 7 ~~l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S~~~~~~~~gI-------~lLe~ll~~~~p~~~rd~lY 75 (152)
T 1pc2_A 7 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----SKYNDDIRKGI-------VLLEELLPKGSKEEQRDYVF 75 (152)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----CSSHHHHHHHH-------HHHHHHHHHSCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc----CCCHHHHHHHH-------HHHHHHHhcCCccchHHHHH
Confidence 34455678899999999999999999999999999998 88 555777 7789999888 7 5789999
Q ss_pred HHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 256 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 256 ~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
++|..+++++++ ++|+++++++|+++|+|..+...+..+-....+
T Consensus 76 ~LAv~~~kl~~Y----------~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 76 YLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999995 999999999999999999998877766655543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-07 Score=74.17 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE- 263 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~- 263 (365)
..++++|+.+|+++.+.....+. ||.+|.. .+.+++|+ .+|+++.+. +++.+++++|.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~----g~~~~~A~-------~~~~~Aa~~--g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNS----QINKQKLF-------QYLSKACEL--NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCT----TSCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHc----CCCHHHHH-------HHHHHHHcC--CCHHHHHHHHHHHHcC
Confidence 35599999999999998744444 9999988 88888877 778888876 789999999999998
Q ss_pred ---hcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHH
Q 017806 264 ---LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAA 340 (365)
Q Consensus 264 ---~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a 340 (365)
.+++ ++|+.+|+++.+. .++.++++||.+|..-. - ....+..+..+|.++
T Consensus 71 ~g~~~d~----------~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~-g--------------~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 71 KYVKKDL----------RKAAQYYSKACGL--NDQDGCLILGYKQYAGK-G--------------VVKNEKQAVKTFEKA 123 (138)
T ss_dssp SSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-S--------------SCCCHHHHHHHHHHH
T ss_pred CCCCccH----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCC-C--------------CCcCHHHHHHHHHHH
Confidence 6775 9999999999987 78999999999998621 0 011246678888888
Q ss_pred HhcCc
Q 017806 341 HALKP 345 (365)
Q Consensus 341 ~~~~~ 345 (365)
.+...
T Consensus 124 a~~g~ 128 (138)
T 1klx_A 124 CRLGS 128 (138)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77743
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.1e-08 Score=76.53 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-TLHDAFYNWAIA 215 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~ 215 (365)
+....+.+.|.+.+..++.+.++.+++|+++.+.++ .+.+++++..++..++.+ | ++.+++|+||..
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-----------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 557888999999999999999999999999999773 122889999999999999 7 578999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
+++ +|+|++|. ++++++++++|++..+....-.+-..
T Consensus 81 ~~k----l~~Y~~A~-------~y~~~lL~ieP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 81 NYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKA 117 (152)
T ss_dssp HHH----TSCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH----ccCHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999 99999999 88999999999998887665554433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-07 Score=91.36 Aligned_cols=176 Identities=9% Similarity=-0.017 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhhccChhh----------hhhhhhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchh
Q 017806 116 NNAAMELINSVTGVDEEG----------RSRQRILTFAA-KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSK 184 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~----------~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~ 184 (365)
.......|++++...|.. ....|+.++|+ ..|++++...|.+...|..++.+....|+
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~----------- 393 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK----------- 393 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-----------
Confidence 345567788888877651 12346778897 99999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 185 DALLEEACKKYDEATRL-----------CPT-----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
++.|...|++++.. .|. ...+|...+.+... .|..+.|. ..|.+
T Consensus 394 ---~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR-------~vf~~ 459 (679)
T 4e6h_A 394 ---IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASR-------KIFGK 459 (679)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHH-------HHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHH-------HHHHH
Confidence 99999999999975 253 34578888888877 88888888 66777
Q ss_pred HHhc-CCCCHHHHHHHHHHHHHhcC-cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCC
Q 017806 243 AVQL-NWNSPQALNNWGLALQELSA-IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (365)
Q Consensus 243 al~~-~p~~~~~~~~lg~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 320 (365)
|++. .+....+|...+.+-.+.++ . +.|...|+++++..|+++..|...+......|+...+...+..
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~----------e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDT----------KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCC----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7776 44557788877777777654 5 9999999999999999999998889888888887776666655
Q ss_pred CCCCCc
Q 017806 321 PREVSP 326 (365)
Q Consensus 321 ~~~~~~ 326 (365)
++...+
T Consensus 530 al~~~~ 535 (679)
T 4e6h_A 530 SIDKIS 535 (679)
T ss_dssp HTTTSS
T ss_pred HHHhcC
Confidence 555444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-07 Score=80.80 Aligned_cols=178 Identities=12% Similarity=0.015 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ccccCC------CCchhhhHHHHHHHHHHHH-------HH-----
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESAD-NVSLDS------TSPSKDALLEEACKKYDEA-------TR----- 200 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~a~~------~~~~~~~~~~~A~~~~~~a-------l~----- 200 (365)
+.-.+..++-.+..+|++...+...|..|..-+. ++...+ ....+...+..|...|.++ +.
T Consensus 48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~ 127 (301)
T 3u64_A 48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPG 127 (301)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4556777778888888887777666666655432 111100 0000111233333333333 32
Q ss_pred -------------------hCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 017806 201 -------------------LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGL 259 (365)
Q Consensus 201 -------------------~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~ 259 (365)
.+|+++++++-.|.+....+...+.--.|+.....|...+++++++||+ +..+|..+|.
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~ 207 (301)
T 3u64_A 128 FTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTK 207 (301)
T ss_dssp HHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 2455677777777777552221111224666777888999999999999 6779999999
Q ss_pred HHHHh-----cCcchhHHhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh-hhhhhhhcCcCCCCCCCcchHHHH
Q 017806 260 ALQEL-----SAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNELYSQ 332 (365)
Q Consensus 260 ~~~~~-----~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 332 (365)
+|... |+. ++|..+|++|++++|+. ..+++..|..+... |+. ..
T Consensus 208 lY~~vPp~~gGd~----------ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~-------------------~~ 258 (301)
T 3u64_A 208 FYAAAPESFGGGM----------EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR-------------------AG 258 (301)
T ss_dssp HHHHSCTTTTCCH----------HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH-------------------HH
T ss_pred HHHhCCCccCCCH----------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH-------------------HH
Confidence 99995 786 99999999999999975 99999999998875 543 45
Q ss_pred HHHHHHHHHhcCcc
Q 017806 333 SAIYIAAAHALKPS 346 (365)
Q Consensus 333 a~~~~~~a~~~~~~ 346 (365)
+..++.++....|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66677777777665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-08 Score=93.32 Aligned_cols=99 Identities=12% Similarity=-0.012 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHH
Q 017806 186 ALLEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNN 256 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~ 256 (365)
|+|++|+..|++++++ .|++ ...+++||.+|.. +|+|++|+.++++++..+++.+-. .|+-+..+++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3499999999999986 4555 4679999999999 999999999999999999987643 2445668999
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-----CCCCHHHH
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFHRAI 298 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 298 (365)
+|.+|..+|++ ++|+..|++|+.+ .|+++.+.
T Consensus 388 La~~~~~qg~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 388 LGRLYMGLENK----------AAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHhccCH----------HHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999996 9999999999987 57776553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-08 Score=93.88 Aligned_cols=111 Identities=8% Similarity=-0.151 Sum_probs=91.4
Q ss_pred hhhhhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----
Q 017806 135 SRQRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----- 201 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----- 201 (365)
..+|+|++|+..|++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--------------~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--------------LEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHS
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhHHHHc
Confidence 4568899999999999985 3454 5678999999999999 99999999999986
Q ss_pred CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhc
Q 017806 202 CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELS 265 (365)
Q Consensus 202 ~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~ 265 (365)
.|++ ...+++||.+|.. +|++++|+.+|++|+..+++.+ .|+++ .++.+|+.+...++
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~----~g~~~eA~~~~~~Al~i~~~~l--G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLH----QGMFPQAMKNLRLAFDIMRVTH--GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHh
Confidence 3444 5679999999999 9999999999999999998876 45554 56677777776553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=69.07 Aligned_cols=76 Identities=20% Similarity=0.006 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 154 ~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
+|+++.++..+|.+++..++. ...++|..++++++.++|+++.+++.+|.+++. .|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~-----------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai--- 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ-----------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAI--- 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT-----------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHH---
Confidence 689999999999999876540 115899999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH
Q 017806 234 KQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 234 ~~A~~~~~~al~~~p~~~ 251 (365)
..++++++.+|.++
T Consensus 64 ----~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 64 ----DTWVLLLDSNDPNL 77 (93)
T ss_dssp ----HHHHHHHTCCCTTC
T ss_pred ----HHHHHHHhhCCCCc
Confidence 78999999998843
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-08 Score=91.78 Aligned_cols=107 Identities=11% Similarity=-0.059 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHH
Q 017806 188 LEEACKKYDEATRL-----CPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-NWNSPQALNNWG 258 (365)
Q Consensus 188 ~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-~p~~~~~~~~lg 258 (365)
|++|+..|++++++ .|++ ...+.+||.+|.. +|+|++|+.++++++..+++.+-- .|.-+..++++|
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 99999999999986 3444 5679999999999 999999999999999999987632 244566899999
Q ss_pred HHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHh
Q 017806 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQL-----QFDFHR---AIYNLGTVLYGL 308 (365)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~~ 308 (365)
.+|..+|++ ++|+.+|++|+++ .|+++. ++.+|+.+...+
T Consensus 379 ~~~~~~g~~----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 379 KLQLHQGMF----------PQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999996 9999999999977 567654 456666666544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=7e-08 Score=91.09 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-----CC
Q 017806 137 QRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CP 203 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-----~p 203 (365)
.|+|++|+..|++++++ .|++ ..++.+||.+|..+|+ |++|+.+|++++.+ .|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------------WEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHSCS
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999985 4555 4568999999999999 99999999999986 34
Q ss_pred C---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 017806 204 T---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254 (365)
Q Consensus 204 ~---~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~ 254 (365)
+ -+..+++||.+|.. +|++++|+.+|++|+..+++.+ .|+++.+.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~----qg~~~eA~~~~~~Al~i~~~~l--G~~Hp~~~ 424 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMG----LENKAAGEKALKKAIAIMEVAH--GKDHPYIS 424 (433)
T ss_dssp SCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHT--CTTCHHHH
T ss_pred CChHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHc--CCCChHHH
Confidence 4 45679999999999 9999999999999999988765 56776554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=69.31 Aligned_cols=72 Identities=15% Similarity=-0.026 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHH
Q 017806 202 CPTLHDAFYNWAIAISDRAKMRGR---TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (365)
Q Consensus 202 ~p~~~~~~~~lg~~~~~~~~~~g~---~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 278 (365)
+|+++.++..+|.+++. .++ .++|. ..++++++++|+++.+++.+|..++..|++ +
T Consensus 2 ~p~~~~~~~~~a~al~~----~~~~~~~~~A~-------~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y----------~ 60 (93)
T 3bee_A 2 NAVTATQLAAKATTLYY----LHKQAMTDEVS-------LLLEQALQLEPYNEAALSLIANDHFISFRF----------Q 60 (93)
T ss_dssp CCCCHHHHHHHHHHHHH----TTTTCCCHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------H
T ss_pred CCCCHHHHHHHHHHHHH----hcCCCCCHHHH-------HHHHHHHHHCcCCHHHHHHHHHHHHHcCCH----------H
Confidence 68999999999999987 665 68888 889999999999999999999999999996 9
Q ss_pred HHHHHHHHHHHhCCCC
Q 017806 279 TAISKFRAAIQLQFDF 294 (365)
Q Consensus 279 ~A~~~~~~al~~~p~~ 294 (365)
+|+.+|+++++.+|.+
T Consensus 61 ~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 61 EAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHhhCCCC
Confidence 9999999999999884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-07 Score=68.19 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCcchhHHhhhHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-------NWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 277 (365)
++.-++.+|..++. .|+|..|+ .+|+.|++. .+..+.++.++|.++.++|++
T Consensus 4 sa~dc~~lG~~~~~----~~~y~~A~-------~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~---------- 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYT----EADYYHTE-------LWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL---------- 62 (104)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------
T ss_pred CHHHHHHHHHHHHH----ccchHHHH-------HHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH----------
Confidence 45667899999999 99999999 555555553 245688999999999999996
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 278 RTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
+.|+..+++++.++|++..+..|++.+-.
T Consensus 63 ~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 99999999999999999999999984433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.5e-07 Score=67.74 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-------PTLHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
.+.-.+.+|..++..++ |..|+.+|++|++.. +....++..||.++.. +|+++.|
T Consensus 4 sa~dc~~lG~~~~~~~~--------------y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A 65 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEAD--------------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKA 65 (104)
T ss_dssp CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHHHccc--------------hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHH
Confidence 35567899999999999 999999999999873 3468899999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
+ ..++++++++|++..+..|++.
T Consensus 66 ~-------~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 66 L-------LLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp H-------HHHHHHHHHCTTCHHHHHHHHH
T ss_pred H-------HHHHHHHhcCCCCHHHHhhHHH
Confidence 9 7899999999999999998883
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=68.55 Aligned_cols=145 Identities=8% Similarity=-0.042 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS-- 217 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-- 217 (365)
.......|++++...|..+..|...+..+...|+ .+.|...|++|+.. |.+...|...+....
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~--------------~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~ 259 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ--------------KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE 259 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh
Confidence 3456789999999999999999999999999999 99999999999999 998777765544310
Q ss_pred ----H---H---------------------------HHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 218 ----D---R---------------------------AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 218 ----~---~---------------------------~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
. + ..+.+.. +.|...|.++ ...+....+|...+.+-..
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~-------~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL-------ELFRKLFIEL-GNEGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHH-TTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH-------HHHHHHHHHh-hCCCCChHHHHHHHHHHHH
Confidence 0 0 0002222 3355778888 4333456777777777776
Q ss_pred hc-CcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 264 LS-AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 264 ~~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
.+ +. +.|...|+.+++..|+.+..|...+......|+...+...
T Consensus 332 ~~~d~----------~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 332 ATGSR----------ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHCCS----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HCCCh----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66 45 9999999999999999988877777777777766654433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.6e-05 Score=58.16 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-TLHDAFYNWAIA 215 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~ 215 (365)
..+..+.+.|.+.+..++....+.+++|+++.+... .....++|..++..+..+ | ..-++++.||..
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~-----------~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 557778888999999889999999999999998765 222556999999999887 5 577899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
+++ +|+|..|. ++++..|+.+|++..+......+--+
T Consensus 84 ~yk----lg~Y~~A~-------~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 84 NYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH----hhhHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999 99999999 88999999999999887766555433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.8e-05 Score=58.06 Aligned_cols=103 Identities=10% Similarity=0.015 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHh
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-W-NSPQALNNWGLALQEL 264 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~ 264 (365)
....+...|.+.+..++.+.++.+++|.++.. ..+...-. ++|..++..+..+ | ...+.++.+|..++++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~----S~~~~d~~----~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----TRYNDDIR----KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----SSSHHHHH----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc----CCCHHHHH----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 37788888999988888999999999999988 77666611 2337788888776 5 5778999999999999
Q ss_pred cCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
|++ .+|.++++..|+..|+|..+......+-.+
T Consensus 88 g~Y----------~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 88 KEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp TCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 995 999999999999999999887666555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00057 Score=53.40 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=93.7
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHhc
Q 017806 152 ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--------LHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 152 ~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~ 223 (365)
-+.|++++.|..........|+ +...+-.++-++.|++|+..-|- ....|...+.. .. .
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~--------p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e----i 73 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSV--------PLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA----I 73 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTC--------SCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH----H
T ss_pred eeCCCCHHHHHHHHHHHHHcCC--------CchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH----h
Confidence 3679999999999999998888 00002238889999999987664 23455555543 34 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
++.++|. ..|+.++.+..+++.+|...|..-.++|+. ..|.+.+.+|+.+.|...+. ...+.
T Consensus 74 ~D~d~aR-------~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl----------~kARkILg~AiG~~~k~~~~-le~a~ 135 (161)
T 4h7y_A 74 QEPDDAR-------DYFQMARANCKKFAFVHISFAQFELSQGNV----------KKSKQLLQKAVERGAVPLEM-LEIAL 135 (161)
T ss_dssp HCGGGCH-------HHHHHHHHHCTTBHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCBCHHH-HHHHH
T ss_pred cCHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHhccCCCcHHH-HHHHH
Confidence 7888888 667777666778899999999999999997 99999999999999986554 33444
Q ss_pred HHHHhh
Q 017806 304 VLYGLA 309 (365)
Q Consensus 304 ~~~~~g 309 (365)
.-++.|
T Consensus 136 ~nl~~~ 141 (161)
T 4h7y_A 136 RNLNLQ 141 (161)
T ss_dssp HHHHTT
T ss_pred HhhhcC
Confidence 444555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0015 Score=62.58 Aligned_cols=177 Identities=11% Similarity=-0.039 Sum_probs=116.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhh---hhhHHHHHHHHHHHHHh-------------CC
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSR---QRILTFAAKRYANAIER-------------NP 155 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~A~~~~~~al~~-------------~p 155 (365)
+...|..+..|+..+..+ ...|+.+.|...|++|+.. |....- -..+.+-.+.++++... .+
T Consensus 206 l~~~p~~~~lW~~ya~~~-~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 206 LDSFYYAEEVYFFYSEYL-IGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHTTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHH
T ss_pred HHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhccc
Confidence 445577777888777777 4778888888888888888 763110 01110000112222111 01
Q ss_pred CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 017806 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWK 234 (365)
Q Consensus 156 ~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g-~~~~A~~~~~ 234 (365)
....+|...+......+. .+.|...|++| ...+.....|...+.+... .+ +.+.|.
T Consensus 284 ~~~~lw~~y~~~~~r~~~--------------~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~----~~~d~~~ar---- 340 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRG--------------LELFRKLFIEL-GNEGVGPHVFIYCAFIEYY----ATGSRATPY---- 340 (493)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------HHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH----HHCCSHHHH----
T ss_pred ccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHh-hCCCCChHHHHHHHHHHHH----HCCChHHHH----
Confidence 123456666666666677 99999999999 4333466777777777766 55 588888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 235 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
..|+.+++..|+.+..|..++......|+. +.|...|+++ +.....|......-...|+
T Consensus 341 ---~ife~al~~~~~~~~~~~~yid~e~~~~~~----------~~aR~l~er~----~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 341 ---NIFSSGLLKHPDSTLLKEEFFLFLLRIGDE----------ENARALFKRL----EKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp ---HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred ---HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence 678888888899999998888888888886 8999999987 3455666665555555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00036 Score=55.65 Aligned_cols=117 Identities=7% Similarity=-0.069 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHhcCCHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---------HDAFYNWAIAISDRAKMRGRTKEAE 230 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~g~~~~A~ 230 (365)
+++.-...+...+. |+.|+-....++.+..++ ..++..+|.+++. .|+|..|.
T Consensus 22 ~l~dqik~L~d~~L--------------Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~ 83 (167)
T 3ffl_A 22 NVIDHVRDMAAAGL--------------HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAV 83 (167)
T ss_dssp CHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHhhh--------------HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHH
Confidence 34444555566666 999999999988774333 3478999999999 99999999
Q ss_pred HHHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 231 ELWKQATKNYEKAVQLN------------------WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 231 ~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
..|++|++..+...+.. +.+.++.+.++.||.+++++ .+|+..++..- ..-
T Consensus 84 ~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~----------~~Ai~~Le~Ip-~k~ 152 (167)
T 3ffl_A 84 SKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD----------KDAIAILDGIP-SRQ 152 (167)
T ss_dssp HHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH----------HHHHHHHHTSC-GGG
T ss_pred HHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH----------HHHHHHHhcCC-chh
Confidence 99999888666432221 22347889999999999996 99999876532 233
Q ss_pred CCHHHHHHHHHHH
Q 017806 293 DFHRAIYNLGTVL 305 (365)
Q Consensus 293 ~~~~~~~~lg~~~ 305 (365)
..+.+...||..|
T Consensus 153 Rt~kvnm~LakLy 165 (167)
T 3ffl_A 153 RTPKINMLLANLY 165 (167)
T ss_dssp CCHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHh
Confidence 4577777777654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.003 Score=48.33 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAI 216 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 216 (365)
.++....+-|.+-+ .+.-.+.+.+++|+++.+... .....++|..++..+..+|. .-++++.||..+
T Consensus 21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~-----------~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ 88 (134)
T 3o48_A 21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGC 88 (134)
T ss_dssp HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSC-----------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 34555555565543 333467889999999998765 23377899999999999984 588999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
++ +|+|..|. ++.+..++..|++..+......+-.+.
T Consensus 89 yk----lgdY~~Ar-------~y~d~lL~~eP~N~QA~~Lk~~Ie~ki 125 (134)
T 3o48_A 89 YK----LGEYSMAK-------RYVDTLFEHERNNKQVGALKSMVEDKI 125 (134)
T ss_dssp HH----HTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HH----hhhHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 99 99999999 889999999999998877666655444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0039 Score=47.67 Aligned_cols=108 Identities=8% Similarity=-0.048 Sum_probs=81.1
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Q 017806 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLAL 261 (365)
Q Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 261 (365)
.....+.....-|.+=+ ...-.+.+.++++.++.+ ..+...- .++|..++..++.+| ...+.++.+|..+
T Consensus 18 ~~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~----S~~~~d~----~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ 88 (134)
T 3o48_A 18 LYPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIK----STDVNDE----RLGVKILTDIYKEAESRRRECLYYLTIGC 88 (134)
T ss_dssp CCHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHH----SSCHHHH----HHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHc----CCCHHHH----HHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 33444556666665533 233368999999999988 7655332 244478888888888 4589999999999
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
.++|++ ++|.++.+..|+..|+|..+......+-.+..
T Consensus 89 yklgdY----------~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 89 YKLGEY----------SMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ 126 (134)
T ss_dssp HHHTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHhhhH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 999995 99999999999999999988776666655444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.006 Score=47.25 Aligned_cols=106 Identities=8% Similarity=-0.038 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q 017806 184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQ 262 (365)
Q Consensus 184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 262 (365)
....+.....-|.+-+. +.-..++.++++.++.. ..+...-. ++|..++..+..+| ...+.++.+|..+.
T Consensus 18 ~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~----S~~~~di~----~GI~LLe~l~~~~~~~~RdcLYyLAvg~y 88 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIK----STDVNDER----LGVKILTDIYKEAESRRRECLYYLTIGCY 88 (144)
T ss_dssp CHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHH----SSSHHHHH----HHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHc----CCCHHHHH----HHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 33445555555554322 35578999999999998 76654322 44478888888888 46789999999999
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
++|++ .+|.++.+..|+..|+|..+......+-.+.
T Consensus 89 kl~~Y----------~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 89 KLGEY----------SMAKRYVDTLFEHERNNKQVGALKSMVEDKI 124 (144)
T ss_dssp TTTCH----------HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99995 9999999999999999998876666555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.023 Score=54.49 Aligned_cols=156 Identities=10% Similarity=-0.010 Sum_probs=119.9
Q ss_pred HhhhcHHHHHHHHHHhhccC--hh--h-------h---------hhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 017806 111 QLAEQNNAAMELINSVTGVD--EE--G-------R---------SRQRILTFAAKRYANAIERNP-EDYDALYNWALVLQ 169 (365)
Q Consensus 111 ~~~g~~~~A~~~~~~al~~~--~~--~-------~---------~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 169 (365)
...|+.++|+.+|.+..... |+ . + ...+.++.|.+.|.+.....- -+...|..+-..|.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 38899999999998876542 22 1 1 123568999999999887642 36778999999999
Q ss_pred HhcCccccCCCCchhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--
Q 017806 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL-- 246 (365)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~-- 246 (365)
..|+ +++|...|++..+.. .-+...|+.+-..|.+ .|+.++|. +.|+...+.
T Consensus 117 ~~g~--------------~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~-------~l~~~M~~~G~ 171 (501)
T 4g26_A 117 AKDD--------------PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAY-------EVDAHMVESEV 171 (501)
T ss_dssp HHTC--------------HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHTTC
T ss_pred hcCC--------------HHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHH-------HHHHHHHhcCC
Confidence 9999 999999999988763 2267788999999999 99999999 556665544
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGT 303 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 303 (365)
.| +..+|+.+-.++.+.|+. ++|.+.|++.-+. .|+ ...+..+-.
T Consensus 172 ~P-d~~ty~~Li~~~~~~g~~----------d~A~~ll~~Mr~~g~~ps-~~T~~~l~~ 218 (501)
T 4g26_A 172 VP-EEPELAALLKVSMDTKNA----------DKVYKTLQRLRDLVRQVS-KSTFDMIEE 218 (501)
T ss_dssp CC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhhCCCH----------HHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence 34 578899999999999996 9999999997764 454 344444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.021 Score=54.69 Aligned_cols=157 Identities=10% Similarity=-0.085 Sum_probs=119.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCC-CCHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNP-EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFY 210 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 210 (365)
.+.+.|++++|++.|++..+.+- -+...|..+-.++...+. .......+.++.|...|++.....- -+...|+
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~-----~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA-----ATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC-----CSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc-----hhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34567999999999999988642 246666666656554433 1222345668999999999877642 2677899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 211 ~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
.+-..+.+ .|++++|. ..|+...+. .| +..+|+.+-..|.+.|+. ++|.+.|++..
T Consensus 110 ~lI~~~~~----~g~~~~A~-------~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~----------~~A~~l~~~M~ 167 (501)
T 4g26_A 110 NGARLAVA----KDDPEMAF-------DMVKQMKAFGIQP-RLRSYGPALFGFCRKGDA----------DKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHH----HTCHHHHH-------HHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHH
T ss_pred HHHHHHHh----cCCHHHHH-------HHHHHHHHcCCCC-ccceehHHHHHHHHCCCH----------HHHHHHHHHHH
Confidence 99999999 99999999 556665544 34 578899999999999996 99999999988
Q ss_pred HhC--CCCHHHHHHHHHHHHHhhhhhhhhcC
Q 017806 289 QLQ--FDFHRAIYNLGTVLYGLAEDTLRTGG 317 (365)
Q Consensus 289 ~~~--p~~~~~~~~lg~~~~~~g~~~~a~~~ 317 (365)
+.. | +...|..|-.++.+.|+.+++...
T Consensus 168 ~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 168 ESEVVP-EEPELAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HTTCCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCC-CHHHHHHHHHHHhhCCCHHHHHHH
Confidence 763 4 577889999999999987766544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0055 Score=47.44 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 017806 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAIS 217 (365)
Q Consensus 139 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 217 (365)
++....+-|.+-+. +.-...+.+++|+++..... .....++|..++..+...|. .-++++.||..++
T Consensus 21 eL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~-----------~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y 88 (144)
T 1y8m_A 21 QLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCY 88 (144)
T ss_dssp HHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSS-----------HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 34455555544322 34578899999999998765 23377899999999998884 6789999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
+ +|+|.+|. ++.+..|+.+|++..+......+-.
T Consensus 89 k----l~~Y~~Ar-------~y~d~lL~~eP~n~QA~~Lk~~Ie~ 122 (144)
T 1y8m_A 89 K----LGEYSMAK-------RYVDTLFEHERNNKQVGALKSMVED 122 (144)
T ss_dssp T----TTCHHHHH-------HHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred H----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9 99999999 8899999999999888766555443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0024 Score=50.86 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=74.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC---
Q 017806 135 SRQRILTFAAKRYANAIERNPED---------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC--- 202 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~--- 202 (365)
+..+.|+.|+-....++.+..++ ..++..+|.+++..++ |..|...|+++|...
T Consensus 31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e--------------yrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE--------------YRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH--------------HHHHHHHHHHHHHHHHHH
Confidence 34467888888888876654322 3478999999999999 999999999997651
Q ss_pred ---C-------------------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017806 203 ---P-------------------TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (365)
Q Consensus 203 ---p-------------------~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 260 (365)
+ .+.++.+.++.|+.. ++++.+|+ ..++. |-..-..+.+-..||.+
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~----l~~~~~Ai-------~~Le~-Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTV----LKQDKDAI-------AILDG-IPSRQRTPKINMLLANL 164 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHH----TTCHHHHH-------HHHHT-SCGGGCCHHHHHHHHHH
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHH----HCCHHHHH-------HHHhc-CCchhcCHHHHHHHHHH
Confidence 1 113788999999999 99999999 43433 22233467777777776
Q ss_pred H
Q 017806 261 L 261 (365)
Q Consensus 261 ~ 261 (365)
|
T Consensus 165 y 165 (167)
T 3ffl_A 165 Y 165 (167)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0052 Score=48.04 Aligned_cols=100 Identities=6% Similarity=-0.134 Sum_probs=79.5
Q ss_pred cCCCchHHHHhcCCChhHhhhcH------HHHHHHHHHhhccChhh-----------------hhhhhhHHHHHHHHHHH
Q 017806 94 GEDSVTDASFSQGNTPHQLAEQN------NAAMELINSVTGVDEEG-----------------RSRQRILTFAAKRYANA 150 (365)
Q Consensus 94 ~~~~~~~a~~~~g~~~~~~~g~~------~~A~~~~~~al~~~~~~-----------------~~~~~~~~~A~~~~~~a 150 (365)
..|.+++.|...-..+ +..|+. +.-++.|++|+..-|.. +...+|.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~ll-E~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKL-EKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHH-HHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH-HHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4577777777666666 566776 88889999998877651 22338899999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 151 IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA 208 (365)
Q Consensus 151 l~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 208 (365)
+.+....+.+|...|..-.++|+ ...|...+.+|+.+.|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgn--------------l~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGN--------------VKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHccc--------------HHHHHHHHHHHhccCCCcHHH
Confidence 99988888888888888888888 999999999999999986553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.18 Score=46.48 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
.+...++..+...|+ +.+++..+++++..+|-+..+|..|-.++.. .|+..+|+..|+....
T Consensus 172 ~a~~~~~~~~l~~g~--------------~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~----~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGR--------------ASAVIAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 345667777888888 9999999999999999999999999999999 9999999999999888
Q ss_pred HHHHHHhcCCC
Q 017806 239 NYEKAVQLNWN 249 (365)
Q Consensus 239 ~~~~al~~~p~ 249 (365)
.+..-+.++|.
T Consensus 234 ~L~~eLG~~P~ 244 (388)
T 2ff4_A 234 TLADDLGIDPG 244 (388)
T ss_dssp HHHHHHSCCCC
T ss_pred HHHHHhCCCCC
Confidence 88888888886
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.029 Score=53.39 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.+..||.+...... +..|..+|.+|+.+.|++...++.||.+... .|+.-+|+ -+
T Consensus 154 ~l~~LGDL~RY~~~--------------~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~-------y~ 208 (497)
T 1ya0_A 154 CLVHLGDIARYRNQ--------------TSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTI-------FY 208 (497)
T ss_dssp HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHHcccHHHHHHH--------------HHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHH-------HH
Confidence 45566666666666 8999999999999999999999999999999 99999999 66
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
|.+++....-++.+..|+...+.+.
T Consensus 209 y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 209 YCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhHHHHHHHHHHHH
Confidence 7777766666777777777776653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.13 Score=51.32 Aligned_cols=117 Identities=13% Similarity=0.025 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC-CCCH----------HHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSP----------QALNN 256 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~-p~~~----------~~~~~ 256 (365)
++.|+..+++....+|.....+......... +...+--+|+....++++.+...+..- +.+. ..+..
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~--~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILD--HIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 6889999999999999765433222111111 002234567777777776665544432 3332 23334
Q ss_pred HHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhc
Q 017806 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTG 316 (365)
Q Consensus 257 lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 316 (365)
-+..+...|+ |+-|+.+-++|+.+.|.....|+.|+.||..+|+.+.|+.
T Consensus 343 Qa~FLl~K~~----------~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 343 QTNFLLNRGD----------YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHTTC----------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccCc----------HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 4555566666 5999999999999999999999999999999999888753
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.097 Score=49.81 Aligned_cols=81 Identities=23% Similarity=0.218 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++..||.+... ...+..|. .+|.+|+.+.|++...++.||.+....|+. -+|+-+|.+
T Consensus 153 r~l~~LGDL~RY----~~~~~~A~-------~~Y~~A~~~~P~~G~~~nqLavla~~~~~~----------l~a~y~y~r 211 (497)
T 1ya0_A 153 HCLVHLGDIARY----RNQTSQAE-------SYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHHcccHHHH----HHHHHHHH-------HHHHHHHHhCCCCCchHHHHHHHHhccccc----------HHHHHHHHH
Confidence 467778888888 77777777 889999999999999999999999999996 889999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHh
Q 017806 287 AIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 287 al~~~p~~~~~~~~lg~~~~~~ 308 (365)
++......+.+..||...+...
T Consensus 212 sl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 212 SIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCChhHHHHHHHHHHHH
Confidence 9998877899999999888764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.18 Score=50.43 Aligned_cols=113 Identities=13% Similarity=0.071 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCccccCCCCchhhhHHHHHHHHHHHHHH--------hCCCCH---
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQE--SADNVSLDSTSPSKDALLEEACKKYDEATR--------LCPTLH--- 206 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~a~~~~~~~~~~~~~A~~~~~~al~--------~~p~~~--- 206 (365)
++.|+..+++..+.+|.... ++..+.+... .++ .--+|+....++++ +.+.+.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~-------------~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIET-------------KELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGG-------------GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 68899999999999997643 3333332221 111 13456666666653 122322
Q ss_pred -------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHH
Q 017806 207 -------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRT 279 (365)
Q Consensus 207 -------~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 279 (365)
..+..-+..+.. .|+++-|+ +.-++|+.+-|.....|+.|+.+|..+|++ +.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~----K~~~elAL-------~~Ak~AV~~aPseF~tW~~La~vYi~l~d~----------e~ 389 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLN----RGDYELAL-------GVSNTSTELALDSFESWYNLARCHIKKEEY----------EK 389 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHTTCH----------HH
T ss_pred cccCcchHHHHHHHHHHhc----cCcHHHHH-------HHHHHHHhcCchhhHHHHHHHHHHHHhccH----------HH
Confidence 234444566666 89999998 889999999999999999999999999996 88
Q ss_pred HHHHHHHH
Q 017806 280 AISKFRAA 287 (365)
Q Consensus 280 A~~~~~~a 287 (365)
|+-.+..+
T Consensus 390 ALLtLNSc 397 (754)
T 4gns_B 390 ALFAINSM 397 (754)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 87655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.13 Score=51.62 Aligned_cols=89 Identities=16% Similarity=0.044 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELS 265 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~ 265 (365)
+++|.+..+. -++...|..+|..+.. .|+++.|+.+|.++ ..|..+..+ ..++.+.+..++......|
T Consensus 668 ~~~A~~~~~~-----~~~~~~W~~la~~al~----~~~~~~A~~~y~~~-~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 668 LTLARDLLTD-----ESAEMKWRALGDASLQ----RFNFKLAIEAFTNA-HDLESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHHTT-----CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH-TCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-----hCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc-cChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888776542 3567888888888888 88888888776654 222222211 2445666666676666666
Q ss_pred CcchhHH---hhhHHHHHHHHHHH
Q 017806 266 AIVPARE---KQTIVRTAISKFRA 286 (365)
Q Consensus 266 ~~~~~~~---~~~~~~~A~~~~~~ 286 (365)
++..|.. ..|++++|++.|.+
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCHHHHHHHHHH
Confidence 6643332 34555666666554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.71 Score=39.77 Aligned_cols=119 Identities=12% Similarity=-0.021 Sum_probs=83.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
.++.|++++|+......++.+|.+......+-.++.-.|+ |+.|..-++.+.+++|.....-..+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~--------------w~RA~~QL~~~a~l~p~~~~~a~~yr 72 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 4566889999999999999999999999999999999999 99999999999999998654322211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc---C---CCCHH---HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQL---N---WNSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~---~---p~~~~---~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
. +|.. +.++..+=. . +..+. ....-+......|+. ++|...-
T Consensus 73 ~--------------lI~a-----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~----------~~A~~lr 123 (273)
T 1zbp_A 73 H--------------LVKA-----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY----------EQVSELA 123 (273)
T ss_dssp H--------------HHHH-----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH----------HHHHHHH
T ss_pred H--------------HHHH-----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCH----------HHHHHHH
Confidence 1 1111 223332211 1 12222 333344555556775 9999999
Q ss_pred HHHHHhCCCCH
Q 017806 285 RAAIQLQFDFH 295 (365)
Q Consensus 285 ~~al~~~p~~~ 295 (365)
.+|++..|..+
T Consensus 124 ~~A~e~ap~~~ 134 (273)
T 1zbp_A 124 LQIEELRQEKG 134 (273)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHhcCcccC
Confidence 99999877543
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.67 Score=36.94 Aligned_cols=169 Identities=11% Similarity=-0.030 Sum_probs=103.4
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccC-----hhhhhhhhhHHHHHHHHHHHHH-----------------hC
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIE-----------------RN 154 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~A~~~~~~al~-----------------~~ 154 (365)
..++--..++.+++ ..|.+..++-++.+.-... ..|+...++|.+|+.+++..++ .+
T Consensus 31 ~~~eY~lL~~I~Ly-yngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 31 CKPEYRMLMSIVLY-LNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp ---CTHHHHHHHHH-HTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred CChHHHhhhhhhhh-hcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 33445555666674 7888888877665432222 2267777999999999999984 23
Q ss_pred CCCHHH-HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHHHHHHh
Q 017806 155 PEDYDA-LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI-----------AISDRAKM 222 (365)
Q Consensus 155 p~~~~~-~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-----------~~~~~~~~ 222 (365)
|.+.+. +..+|.++...|+ .++||.+|.....+.|-.+.+-+.+-. +... .
T Consensus 110 ~~DkEfFy~l~a~lltq~g~--------------r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~---~ 172 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGY--------------REEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQT---G 172 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------
T ss_pred cchHHHHHHHHHHHHHHhcC--------------HHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhh---h
Confidence 555554 4567999999999 999999999999988765443322100 0000 0
Q ss_pred cCC-----HHHHHHHHHHHH--HHHHHHHhcCCCCHHH-HHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 223 RGR-----TKEAEELWKQAT--KNYEKAVQLNWNSPQA-LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 223 ~g~-----~~~A~~~~~~A~--~~~~~al~~~p~~~~~-~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
... +....+ ++..+ ...++-...-|..... ..+.+..|..+|-. ++...+|...-..+|..
T Consensus 173 ~~~i~~~y~~d~~~-lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~----------d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 173 RRGIEEEYVSDSIE-FHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMN----------DKSKACFELVRRKDPMF 241 (242)
T ss_dssp --CHHHHHHHHHHH-HHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTT
T ss_pred hccchhhhhhhHHH-HHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccc----------hhHHHHHHHHHhcCCCc
Confidence 000 011111 11100 1222333344664433 34677889999997 99999999999999863
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.49 Score=43.50 Aligned_cols=161 Identities=12% Similarity=0.012 Sum_probs=106.4
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---h-----------hhh--hhhHHHHHHHHHHHHHhCCCCHHHH--
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---G-----------RSR--QRILTFAAKRYANAIERNPEDYDAL-- 161 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---~-----------~~~--~~~~~~A~~~~~~al~~~p~~~~~~-- 161 (365)
.+.+.+|.+| ...|+.++-.+++......-+. + .+. .+..+.-++.+..+++..-+.-..|
T Consensus 20 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELY-KQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHH-HHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888 4888888888888776655433 0 000 1334445556666665432222222
Q ss_pred ----HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 162 ----YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 162 ----~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
..+|.+|...|+ |.+|...+.+.+.-... ..+++..-..+|.. .+++..+..
T Consensus 99 ~~l~~kL~~l~~~~~~--------------y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~ 160 (394)
T 3txn_A 99 QSLEARLIALYFDTAL--------------YTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARA 160 (394)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHH
Confidence 378999999999 99999999998874221 24566777777888 999999998
Q ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 232 LWKQATKNYEKAVQLNWN-SPQALNNWGLALQ-ELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+.+|..... ++-.+|. .+.....-|..+. ..+++ .+|..+|-+++.-
T Consensus 161 ~l~~a~~~~~-ai~~~p~i~a~i~~~~Gi~~l~~~rdy----------k~A~~~F~eaf~~ 210 (394)
T 3txn_A 161 ALTSARTTAN-AIYCPPKVQGALDLQSGILHAADERDF----------KTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTTSCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHhhhc-cCCCCHHHHHHHHHHhhHHHHHhccCH----------HHHHHHHHHHHhc
Confidence 7777755433 3323332 2345555677777 67775 9999999999854
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.32 E-value=1.7 Score=34.98 Aligned_cols=97 Identities=12% Similarity=-0.041 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
.|+++.|.+..+.. ++...|..||......|+ ++-|+.+|+++- + +..+..+|
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn--------------~~lAe~cy~~~~-----D---~~~L~~Ly 70 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGN--------------ASLAEMIYQTQH-----S---FDKLSFLY 70 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHTT-----C---HHHHHHHH
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHhC-----C---HHHHHHHH
Confidence 37788887776554 678889999999999999 999999999872 2 33444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.. .|+.+.-. +.-+.+... .+ ++....+++.+|++ +++++.|.+
T Consensus 71 ~~----tg~~e~L~-------kla~iA~~~-g~----~n~af~~~l~lGdv----------~~~i~lL~~ 114 (177)
T 3mkq_B 71 LV----TGDVNKLS-------KMQNIAQTR-ED----FGSMLLNTFYNNST----------KERSSIFAE 114 (177)
T ss_dssp HH----HTCHHHHH-------HHHHHHHHT-TC----HHHHHHHHHHHTCH----------HHHHHHHHH
T ss_pred HH----hCCHHHHH-------HHHHHHHHC-cc----HHHHHHHHHHcCCH----------HHHHHHHHH
Confidence 55 67665544 222222221 11 22334567777885 777777654
|
| >2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.22 Score=34.69 Aligned_cols=45 Identities=27% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
..+.|+....+|++. -. .|++.+|+.+|..|++.|..+++..|+.
T Consensus 15 ~~~~Ai~lv~~Ave~---------------D~----~g~y~eAl~lY~~aie~l~~alk~e~d~ 59 (83)
T 2w2u_A 15 LEEMARKYAINAVKA---------------DK----EGNAEEAITNYKKAIEVLAQLVSLYRDG 59 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHH---------------HH----hccHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 367778777777654 34 9999999999999999999999887654
|
| >2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.29 Score=34.15 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
.+.|+....+|++. -. .|++.+|+.+|..|++.|..+++..|+..
T Consensus 8 ~~~Ai~lv~~Ave~---------------D~----~g~y~eAl~lY~~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 8 EDMARKYAILAVKA---------------DK----EGKVEDAITYYKKAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHH---------------HH----hccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 66788888887654 34 99999999999999999999998876543
|
| >1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.52 Score=33.59 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
....+.|+..+.+|++.+ . .|+|++|+.+|..|+..|..+++..++..
T Consensus 9 ~~~l~~Ai~lv~~Ave~D---------------~----~g~y~eAl~~Y~~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELD---------------A----ESRYQQALVCYQEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp CCHHHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred hHHHHHHHHHHHHHHHHH---------------H----hCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 345778888888886643 4 89999999999999999999999887644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.7 Score=46.29 Aligned_cols=124 Identities=11% Similarity=-0.041 Sum_probs=73.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHH--------hCCCCHH
Q 017806 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR--------LCPTLHD 207 (365)
Q Consensus 136 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~--------~~p~~~~ 207 (365)
..|+++.|.+..+ ..++...|..+|..+...++ ++.|+.+|.++-. ....+.+
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~--------------~~~A~~~y~~~~d~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN--------------FKLAIEAFTNAHDLESLFLLHSSFNNKE 724 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC--------------HHHHHHHHHHccChhhhHHHHHHcCCHH
Confidence 3477777776643 34678999999999999999 9999999998722 1233444
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 287 (365)
.+..++..... .|++..|. ..|.+. ++.+ ..-.+|.+.++ +++|+..-++
T Consensus 725 ~~~~~~~~a~~----~~~~~~A~-------~~~~~~-----g~~~---~a~~~~~~~~~----------~~~A~~lA~~- 774 (814)
T 3mkq_A 725 GLVTLAKDAET----TGKFNLAF-------NAYWIA-----GDIQ---GAKDLLIKSQR----------FSEAAFLGST- 774 (814)
T ss_dssp HHHHHHHHHHH----TTCHHHHH-------HHHHHH-----TCHH---HHHHHHHHTTC----------HHHHHHHHHH-
T ss_pred HHHHHHHHHHH----cCchHHHH-------HHHHHc-----CCHH---HHHHHHHHcCC----------hHHHHHHHHH-
Confidence 44455555555 55555555 222221 1111 11234555555 5888876554
Q ss_pred HHhCCCC---HHHHHHHHHHHHHhhh
Q 017806 288 IQLQFDF---HRAIYNLGTVLYGLAE 310 (365)
Q Consensus 288 l~~~p~~---~~~~~~lg~~~~~~g~ 310 (365)
..|.. ..+....+.-+...|+
T Consensus 775 --~~~~~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 775 --YGLGDNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred --hCCChHHHHHHHHHHHHHHHhccc
Confidence 45544 2444455555555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=2.3 Score=38.98 Aligned_cols=81 Identities=16% Similarity=-0.013 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 017806 188 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~ 245 (365)
.+.|...+++|+.+.... ..+...++..+.. .|++.+++ ..+..++.
T Consensus 131 ~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~----~g~~~~a~-------~~l~~~~~ 199 (388)
T 2ff4_A 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA----CGRASAVI-------AELEALTF 199 (388)
T ss_dssp HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHH
Confidence 777777777777763210 1223345555556 88888888 77999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHH
Q 017806 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (365)
Q Consensus 246 ~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 289 (365)
.+|-+-.+|..+-.+|...|+. .+|++.|++.-.
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~----------~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQ----------SDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 9999999999999999999997 888888877654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.79 E-value=3.2 Score=33.14 Aligned_cols=117 Identities=14% Similarity=0.029 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (365)
Q Consensus 138 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 217 (365)
.+|+.++=.-.- +-|..++....++.+++-.|+ |..|+-++.+ -+..-+.+.-..++.
T Consensus 16 ~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngE--------------Y~R~Lf~L~~-----lNT~Ts~YYk~LCy~ 73 (242)
T 3kae_A 16 RDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGE--------------YTRALFHLHK-----LNTCTSKYYESLCYK 73 (242)
T ss_dssp TCHHHHHHHHHH---HC----CTHHHHHHHHHHTTC--------------HHHHHHHHHT-----CCBHHHHHHHHHHHH
T ss_pred ccccHHHHHHHH---HccCChHHHhhhhhhhhhcch--------------HhHHHHHHHh-----cchHHHHHHHHHHHH
Confidence 456655432222 334445566788999999999 8888776643 245666777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHh-----------------cCCCCHH-HHHHHHHHHHHhcCcchhHHhhhHHHH
Q 017806 218 DRAKMRGRTKEAEELWKQATKNYEKAVQ-----------------LNWNSPQ-ALNNWGLALQELSAIVPAREKQTIVRT 279 (365)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~A~~~~~~al~-----------------~~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~ 279 (365)
. ..+|..|+ ..++..++ .||.+-+ .+..+|.++...|+. ++
T Consensus 74 k----lKdYkkA~-------~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r----------~E 132 (242)
T 3kae_A 74 K----KKDYKKAI-------KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYR----------EE 132 (242)
T ss_dssp H----TTCHHHHH-------HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCH----------HH
T ss_pred H----HHHHHHHH-------HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCH----------HH
Confidence 8 99999999 66777762 2344544 455689999999997 99
Q ss_pred HHHHHHHHHHhCCCCHHH
Q 017806 280 AISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 280 A~~~~~~al~~~p~~~~~ 297 (365)
|+.+|.......|-.+.+
T Consensus 133 aI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 133 GIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred hhhHhhhhcCCccccchH
Confidence 999999999998865443
|
| >4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.21 E-value=2.3 Score=29.66 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
.|++++|+.+|..|+..|..+++..|+.
T Consensus 29 ~g~y~eAl~lY~~Aie~ll~alk~e~d~ 56 (86)
T 4a5x_A 29 ESRYPQALVCYQEGIDLLLQVLKGTKDN 56 (86)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 9999999999999999999999987764
|
| >2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.45 E-value=1.4 Score=30.64 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~ 250 (365)
..+.|+..+.+|++. .. .|++++|+.+|..|+..|..+++..++.
T Consensus 9 ~l~~A~~l~~~Av~~---------------D~----~g~y~eAl~~Y~~aie~l~~a~k~e~~~ 53 (85)
T 2v6x_A 9 FLTKGIELVQKAIDL---------------DT----ATQYEEAYTAYYNGLDYLMLALKYEKNP 53 (85)
T ss_dssp HHHHHHHHHHHHHHH---------------HH----TTCHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 367777777777643 34 8999999999999999999999887653
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.4 Score=45.46 Aligned_cols=137 Identities=9% Similarity=-0.094 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHH----------HHH
Q 017806 137 QRILTFAAKRYANAI-----------ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC----------KKY 195 (365)
Q Consensus 137 ~~~~~~A~~~~~~al-----------~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~----------~~~ 195 (365)
.+++++|.++-...+ .+|+-.+.+|+..+.++...|+ ..... ..+
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~--------------~~~~~~~~~~~~~ir~~L 214 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLAR--------------SSEEINSDNQNIILRSTM 214 (523)
T ss_dssp --------------------------------------------------------------------CHHHHHHHHTHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcc--------------cccccccccchhhHHHHH
Confidence 355666666555443 1245567788888888888877 44321 122
Q ss_pred HHHHHh-----CCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHH
Q 017806 196 DEATRL-----CPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-------PQALNNWGLALQ 262 (365)
Q Consensus 196 ~~al~~-----~p~-~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~ 262 (365)
-.++.. |+. .+..++.+-..|.. .+.++.|. +...++. .|.. ...++.+|.++.
T Consensus 215 l~~~rta~lr~D~~~qa~l~nllLRnYL~----~~~y~qA~-------~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 215 MKFLKIASLKHDNETKAMLINLILRDFLN----NGEVDSAS-------DFISKLE--YPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp HHHHHHCCSCSSSCHHHHHHHHHHHHHHH----SSCSTTHH-------HHHHHHC--SCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHc----cCcHHHHH-------HHHhcCc--CCcccCCHHHHHHHHHHHHHHHH
Confidence 222222 222 35678888888888 99999999 6666663 3432 567788899999
Q ss_pred HhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhhh
Q 017806 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-------RAIYNLGTVLYGLAE 310 (365)
Q Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~ 310 (365)
-++++ .+|.+++..|+...|.+. .++..+-.|-.-+|+
T Consensus 282 ~q~~Y----------~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~ 326 (523)
T 4b4t_S 282 IQLDY----------STANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGD 326 (523)
T ss_dssp HTTCH----------HHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTC
T ss_pred HhccH----------HHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCC
Confidence 99995 999999999999877542 233334444445664
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.81 E-value=1.6 Score=37.55 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA 253 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~ 253 (365)
|.++++++.....++.+|.|+.....|-.++.- .|+|+.|. +.++.+.+++|.....
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv----~G~w~RA~-------~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERAD-------EQLMQSIKLFPEYLPG 67 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCGGGHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHhCchhhHH
Confidence 449999999999999999999999999999999 99999999 7799999999986543
|
| >2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1 | Back alignment and structure |
|---|
Probab=89.72 E-value=2.5 Score=31.48 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~ 252 (365)
.++.|+..+.+|++. -. .|+|++|+.+|..|+..|..+++..+.+..
T Consensus 14 ~l~kAi~lv~~Ave~---------------D~----ag~y~eAl~lY~~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 14 NLQKAIDLASKAAQE---------------DK----AGNYEEALQLYQHAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHHHHH---------------HH----HTCHHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHH---------------HH----ccCHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 477888888888643 34 899999999999999999999998755554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.40 E-value=1.5 Score=40.81 Aligned_cols=104 Identities=12% Similarity=-0.008 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 155 p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
.....++..+|..|...|+ ++.|.++|.++...... -.+.+...-.++.. .++|..+..
T Consensus 128 ~e~~~~~~~la~~~~~~Gd--------------~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~ 189 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGD--------------KDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKE 189 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCC--------------CTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHH
Confidence 3455678999999999999 99999999999876433 46778888888888 999999996
Q ss_pred HHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 232 LWKQATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
.+++|...+. ...++. .....|..+...++ |.+|...|-.++...
T Consensus 190 ~~~ka~~~~~-----~~~d~~~~~~lk~~~gl~~l~~r~----------f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 190 KLEAVNSMIE-----KGGDWERRNRYKTYYGIHCLAVRN----------FKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHT-----TCCCTHHHHHHHHHHHHGGGGTSC----------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhh-----cCCCHHHHHHHHHHHHHHHHHhCh----------HHHHHHHHHHHhccC
Confidence 6555433221 122333 33344555666666 599999999888654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.38 E-value=17 Score=37.59 Aligned_cols=99 Identities=9% Similarity=-0.138 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~ 233 (365)
...+..+-..|.+.|+ .++|...|.+..+. ..-+...|+-|-..|.+ .|++++|.
T Consensus 127 ~~TynaLIdglcK~G~--------------leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----~G~~~eA~--- 185 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQ--------------LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----QGAFKELV--- 185 (1134)
T ss_dssp HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----HTCHHHHH---
T ss_pred HHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----CCCHHHHH---
Confidence 4457888889999999 99999999775432 23367789999999999 99999999
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhC
Q 017806 234 KQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (365)
Q Consensus 234 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 291 (365)
+.|+...+. .| +..+|+.+-.++.+.|+. .++|.++|++..+..
T Consensus 186 ----~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~---------~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 186 ----YVLFMVKDAGLTP-DLLSYAAALQCMGRQDQD---------AGTIERCLEQMSQEG 231 (1134)
T ss_dssp ----HHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcC
Confidence 557666543 35 578888888899999875 368889999988764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.30 E-value=4.3 Score=37.20 Aligned_cols=176 Identities=10% Similarity=-0.106 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHhcCccccCCCCchhhhHHHH
Q 017806 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALY-----NWALVLQESADNVSLDSTSPSKDALLEE 190 (365)
Q Consensus 116 ~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----~lg~~~~~~~~~~~a~~~~~~~~~~~~~ 190 (365)
.++++...+.++-.-...+...|++++-..++.......+..+.+.. .+-..+....+ ....+++-
T Consensus 11 ~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~---------~~~~~~~~ 81 (394)
T 3txn_A 11 DEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA---------GTGIEVQL 81 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC---------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC---------cHHHHHHH
Confidence 44566667777766666677778888888777766554443333221 11112211111 01222333
Q ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcC
Q 017806 191 ACKKYDEATRLCPTLHD--AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSA 266 (365)
Q Consensus 191 A~~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~ 266 (365)
+.++++-+-.-.-.... .-..||.+|.. .|+|.+|.+.+.+..+.+.+ .|.+ -.+++..-..+|..+++
T Consensus 82 ~~~~~~~a~~~~r~flr~~l~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~---~dd~~~llev~lle~~~~~~~~n 154 (394)
T 3txn_A 82 CKDCIEWAKQEKRTFLRQSLEARLIALYFD----TALYTEALALGAQLLRELKK---LDDKNLLVEVQLLESKTYHALSN 154 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTT---SSCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHhcc
Confidence 33333333221111112 33489999999 99999999776665555543 2222 24667777888889998
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhC---CCCHHH----HHHHHHHHH-HhhhhhhhhcC
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQ---FDFHRA----IYNLGTVLY-GLAEDTLRTGG 317 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~----~~~lg~~~~-~~g~~~~a~~~ 317 (365)
+ .++...|.+|.... +.++.. ...-|..+. ..+++..|...
T Consensus 155 ~----------~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~ 203 (394)
T 3txn_A 155 L----------PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSY 203 (394)
T ss_dssp H----------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred H----------HHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHH
Confidence 6 99999999987653 233332 233355555 45555544433
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=88.20 E-value=2.8 Score=29.34 Aligned_cols=43 Identities=26% Similarity=0.185 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 017806 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (365)
Q Consensus 208 ~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~ 255 (365)
.+..++..+.. .|+|++||+++.+|..++..|+++- .+..++.
T Consensus 17 ~~~RrAe~ll~----~gkydeAIech~kAa~yL~eAmklt-qs~qa~~ 59 (97)
T 2crb_A 17 QQSRRADRLLA----AGKYEEAISCHRKATTYLSEAMKLT-ESEQAHL 59 (97)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHH
T ss_pred HhhhHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence 34556666777 9999999999999999999999986 4555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.70 E-value=9.8 Score=40.10 Aligned_cols=33 Identities=9% Similarity=-0.047 Sum_probs=27.0
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhc
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTG 128 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~ 128 (365)
-+.++..-|.+|.+++ ..|++++|..+|+++..
T Consensus 838 ~~~~~~~~yl~g~~~L-~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYL-KSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp SCCCHHHHHHHHHHHH-HTTCHHHHHHHHHTCCC
T ss_pred ccCCcHHHHHHHHHHH-hcCCHHHHHHHHHHHhh
Confidence 3556666789999995 99999999999998754
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.61 E-value=12 Score=35.53 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=49.1
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHH--------------HHHHh-hccChh-----------hhhhhhhHHHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAME--------------LINSV-TGVDEE-----------GRSRQRILTFAAKR 146 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~--------------~~~~a-l~~~~~-----------~~~~~~~~~~A~~~ 146 (365)
..+.-....||..+.++ +..|+...... .++.+ +..+.. .|...+.+++|...
T Consensus 175 tlD~l~ak~~fY~s~~~-e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~l 253 (523)
T 4b4t_S 175 SLNLINAKLWFYIYLSH-ETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDF 253 (523)
T ss_dssp -----------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHH
Confidence 34555667788888877 67776554321 22222 122222 34555889999999
Q ss_pred HHHHHHhCCCC-------HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC
Q 017806 147 YANAIERNPED-------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (365)
Q Consensus 147 ~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (365)
..++. +|.. ...++.+|.++...++ |.+|.+++..|+...|.+
T Consensus 254 vsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~--------------Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 254 ISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD--------------YSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTSSCSCS
T ss_pred HhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCcc
Confidence 98884 5543 4567889999999999 999999999999988764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.06 E-value=12 Score=39.55 Aligned_cols=104 Identities=12% Similarity=-0.096 Sum_probs=73.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HHHHHHHHhc---CCCCHHHHHHHHHHH
Q 017806 198 ATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA-------------TKNYEKAVQL---NWNSPQALNNWGLAL 261 (365)
Q Consensus 198 al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A-------------~~~~~~al~~---~p~~~~~~~~lg~~~ 261 (365)
.+...|.++...+.+|.++.. .|++++|..+|.+| +......... ....+..|..+..++
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~----~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LF 909 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKL 909 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHH
T ss_pred HhhhccCCcHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHH
Confidence 445678888888999999999 99999999777664 1122222222 222356677777788
Q ss_pred HHhcCcchhHHhhhHHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHhhhhhhhh
Q 017806 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQF-DFHR----AIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~----~~~~lg~~~~~~g~~~~a~ 315 (365)
.+.+.+ +.+++.-+.|++..+ ++.. .|.++=..+..+|+.++|.
T Consensus 910 e~~~~~----------~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 910 FEESAY----------IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HHTSCC----------HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred HHcCCH----------HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 787876 999999999998754 3332 5667777777788776653
|
| >2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.89 E-value=3.4 Score=30.45 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+++|..+..++|.++ . .|+-+.|+++|.+.|..++++|.+..+
T Consensus 19 h~~AF~~Is~AL~~D---------------E----~g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTD---------------E----LGQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHH---------------H----HTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHhhhh---------------h----cCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 666666666666654 3 799999999999999999999998764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.11 E-value=9.6 Score=35.47 Aligned_cols=101 Identities=11% Similarity=-0.050 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh-C---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-C---PT--LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-~---p~--~~~~~~~lg~~~~~~~~~~g~~~~A~~ 231 (365)
......|+.++...|+ +.+|...+.....- . +. -.+.+.....++.. .+++..|..
T Consensus 137 arl~~~La~i~e~~g~--------------~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~----~~d~~~a~~ 198 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGK--------------IDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL----KGDYSQATV 198 (445)
T ss_dssp HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 4556788999999999 99999999987532 1 11 24677778888888 999999996
Q ss_pred HHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHh
Q 017806 232 LWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (365)
Q Consensus 232 ~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 290 (365)
.+.++... +.. .+.. ...+...|..+...+++ .+|-++|.+++..
T Consensus 199 ~~~ki~~~---~~~-~~~~~~lk~~~~~~~~~~~~~e~~y----------~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 199 LSRKILKK---TFK-NPKYESLKLEYYNLLVKISLHKREY----------LEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHH---HHH-SSCCHHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHh---hcc-cCCcHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhc
Confidence 55444221 222 2333 34666778888888885 9999999988865
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.75 E-value=18 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~a 243 (365)
++.|.+..+.. ++...|..||..... .|+++-|+ .+|+++
T Consensus 21 l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~----~gn~~lAe-------~cy~~~ 60 (177)
T 3mkq_B 21 LDAALDEAKKL-----NDSITWERLIQEALA----QGNASLAE-------MIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHH-----CCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHT
T ss_pred HHHHHHHHHHh-----CCHHHHHHHHHHHHH----cCChHHHH-------HHHHHh
Confidence 99999887765 678899999999999 99999999 556654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 365 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 6e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-05 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 9e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-04 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 0.001 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.001 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (153), Expect = 9e-12
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 35/166 (21%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A Y AIE P DA N A L+E + EA Y+ A RLC
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGS--------------VAEAEDCYNTALRLC 301
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
PT D+ N A + +G +EA L Y KA+++ A +N LQ
Sbjct: 302 PTHADSLNNLANI----KREQGNIEEAVRL-------YRKALEVFPEFAAAHSNLASVLQ 350
Query: 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308
+ + + A+ ++ AI++ F A N+G L +
Sbjct: 351 QQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (141), Expect = 3e-10
Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 49/190 (25%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + A+ +P DA N VL+E+ + A Y A L
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARI--------------FDRAVAAYLRALSLS 233
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P N A ++ G A + Y +A++L + P A N AL+
Sbjct: 234 PNHAVVHGNLACVYYEQ----GLIDLAIDT-------YRRAIELQPHFPDAYCNLANALK 282
Query: 263 ELSAIVPAREKQTIVRT------------------------AISKFRAAIQLQFDFHRAI 298
E ++ A + A+ +R A+++ +F A
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 299 YNLGTVLYGL 308
NL +VL
Sbjct: 343 SNLASVLQQQ 352
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 5e-05
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 11/75 (14%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
E A + + R P + R + A++ N
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSI----HFQCRRLDRSAHF-------STLAIKQN 63
Query: 248 WNSPQALNNWGLALQ 262
+A +N G +
Sbjct: 64 PLLAEAYSNLGNVYK 78
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 10/74 (13%)
Query: 233 WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292
++ A ++ + + ++ L + + + AI+
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRL----------DRSAHFSTLAIKQNP 64
Query: 293 DFHRAIYNLGTVLY 306
A NLG V
Sbjct: 65 LLAEAYSNLGNVYK 78
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 7e-04
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + + P++ L + + + L+ + A +
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------------LDRSAHFSTLAIKQN 63
Query: 203 PTLHDAFYNWAIA 215
P L +A+ N
Sbjct: 64 PLLAEAYSNLGNV 76
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 6e-09
Identities = 22/185 (11%), Positives = 47/185 (25%), Gaps = 47/185 (25%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK-------Y 195
+A+ A + D+ A V L++ +K Y
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQA--------------LQDLYQKMLVTDLEY 50
Query: 196 DEATRLCPTLH-DAFYNWAIAISDRAK-------------MRGRTKEAEELWKQATKNYE 241
++ L AF N + +AK + + A + Q +
Sbjct: 51 ALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC 110
Query: 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301
++ + G+ KQT + ++ + +L
Sbjct: 111 TVFNVDLPCRVKSSQLGIISN----------KQTHTSAIVKPQSSSCSY--ICQHCLVHL 158
Query: 302 GTVLY 306
G +
Sbjct: 159 GDIAR 163
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 7e-05
Identities = 11/173 (6%), Positives = 30/173 (17%), Gaps = 39/173 (22%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
+ + ++ + K +
Sbjct: 105 LLQELCTVFNVDLPCRVKSSQLGIISNKQTH--------------TSAIVKPQSSSCSYI 150
Query: 203 PTLHDAFYNWAIAISDRAK-----------------------MRGRTKEAEELWKQATKN 239
+ R + ++
Sbjct: 151 C--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208
Query: 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292
Y +++ + + P A N AL + + + V I F +
Sbjct: 209 YCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY 261
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 41.9 bits (98), Expect = 5e-05
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 14/129 (10%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A + AI+ +P+D ++ +L D E A ++ ++ +L
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLF 60
Query: 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262
P + + + A +++N ++ +
Sbjct: 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 263 ELSAIVPAR 271
I R
Sbjct: 121 LALQIEELR 129
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.5 bits (96), Expect = 9e-05
Identities = 18/199 (9%), Positives = 58/199 (29%), Gaps = 26/199 (13%)
Query: 110 HQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169
+ ++ +V + G + +L + + NP+ VLQ
Sbjct: 19 LEREQKLKLYQSATQAVFQKRQAGELDESVLEL----TSQILGANPDFATLWNCRREVLQ 74
Query: 170 ESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229
++ + + AL++ + R+ P + +++ +S +
Sbjct: 75 ----HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------- 123
Query: 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289
W + + + ++ + + + + ++ + I
Sbjct: 124 --NWARELELCARFLEADERNFHCWDYRRFVAAQA---------AVAPAEELAFTDSLIT 172
Query: 290 LQFDFHRAIYNLGTVLYGL 308
F + + + +L L
Sbjct: 173 RNFSNYSSWHYRSCLLPQL 191
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 25/209 (11%), Positives = 57/209 (27%), Gaps = 20/209 (9%)
Query: 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202
A K +AIE N +Y + ++L+ ++ + + + + R
Sbjct: 62 AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV-WHHRRV 120
Query: 203 PTLHDAFYNWAIAISDRAKM-----------RGRTKEAEELWKQATKNYEKAVQLNWNSP 251
+ + R + +LW + ++ ++ + +
Sbjct: 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 180
Query: 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL--- 308
N + + + V+ I+L A L +L
Sbjct: 181 SVWNQRYFVISNTTGYNDRAVLEREVQ----YTLEMIKLVPHNESAWNYLKGILQDRGLS 236
Query: 309 -AEDTLRTGGTVNPREVSPNELYSQSAIY 336
+ L + P SP + IY
Sbjct: 237 KYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.001
Identities = 19/183 (10%), Positives = 41/183 (22%), Gaps = 48/183 (26%)
Query: 150 AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209
I + + D + VLQ +D E A K +A L + +
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQ--------------RDERSERAFKLTRDAIELNAANYTVW 80
Query: 210 YNWAIAISDRAK------------------------MRGRTKEAEELWKQATKNYEKAVQ 245
+ + + K R E Q + +
Sbjct: 81 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN 140
Query: 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305
+ + A + +QE + + ++ + V+
Sbjct: 141 QDAKNYHAWQHRQWVIQEF----------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 190
Query: 306 YGL 308
Sbjct: 191 SNT 193
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.8 bits (83), Expect = 0.001
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 137 QRILTF--AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194
RIL F + N + NP D D L W VL E + + +++EA K
Sbjct: 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH----SISDAKQMIQEAITK 63
Query: 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQAL 254
++EA + P +A + A + A + EA+ + AT+ +++AV ++ L
Sbjct: 64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 123
Query: 255 NNWGLALQEL 264
+ + +
Sbjct: 124 KSLEMTAKAP 133
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.7 bits (81), Expect = 0.004
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247
EA Y A P + + N A+ + +QA + +A++L+
Sbjct: 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-----------PEQALADCRRALELD 68
Query: 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307
S +A G E+ + AI+ + A L + +
Sbjct: 69 GQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALR 118
Query: 308 LAE 310
+A+
Sbjct: 119 IAK 121
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.75 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.72 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.71 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.7 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.67 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.63 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.59 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.58 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.58 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.58 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.46 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.35 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.31 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.13 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.08 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.75 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.59 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.32 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.16 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 94.31 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 93.56 | |
| d1wr0a1 | 77 | Vacuolar sorting protein 4b (VPS4B, SKD1 protein) | 91.91 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 82.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.49 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.6e-24 Score=192.45 Aligned_cols=202 Identities=19% Similarity=0.201 Sum_probs=161.3
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQ 169 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 169 (365)
...+.+|..++ ..|++++|+..|++++..+|. ++...|++++|+.+|.++++++|++..+|..+|.++.
T Consensus 20 ~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 20 PQPFEEGLRRL-QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 98 (323)
T ss_dssp SSHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence 34456677774 777777777777777777765 2444577777777777777777777777777777777
Q ss_pred HhcCcccc-----------------------------------CCCCchhhhHHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 017806 170 ESADNVSL-----------------------------------DSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNW 212 (365)
Q Consensus 170 ~~~~~~~a-----------------------------------~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l 212 (365)
..|++..+ ........+.+.+|+..|++++.++|+ ++.++..+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 77765444 000112347789999999999999987 57889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
|.++.. .|++++|+ ..|++++..+|+++.+|+++|.+|..+|++ ++|+.+|+++++++|
T Consensus 179 ~~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 179 GVLFNL----SGEYDKAV-------DCFTAALSVRPNDYLLWNKLGATLANGNQS----------EEAVAAYRRALELQP 237 (323)
T ss_dssp HHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCT
T ss_pred HHHHHH----HHHHhhhh-------cccccccccccccccchhhhhhcccccccc----------hhHHHHHHHHHHHhh
Confidence 999999 99999999 779999999999999999999999999996 999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhhcCcCCCCC
Q 017806 293 DFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (365)
Q Consensus 293 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~ 323 (365)
+++.+|+++|.++..+|+..++...+..++.
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988776665544444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.1e-23 Score=189.63 Aligned_cols=199 Identities=24% Similarity=0.244 Sum_probs=105.6
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALY 162 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 162 (365)
...|..+.++..+|.++ ...|++++|+..+++++..+|. .+...|++++|+..|.+++..+|.....+.
T Consensus 163 ~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVF-NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccCcchhHHHHhhcccc-cccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 34455555555555555 3555555555555555555543 122335555555555555555555555555
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
.+|.++...|+ +++|+..|+++++++|+++.++.++|.++.. .|++.+|+ ..|++
T Consensus 242 ~l~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~~ 296 (388)
T d1w3ba_ 242 NLACVYYEQGL--------------IDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAE-------DCYNT 296 (388)
T ss_dssp HHHHHHHHTTC--------------HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHH-------HHHHH
T ss_pred HHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHh
Confidence 55555555555 5555555555555555555555555555555 55555555 33444
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCC
Q 017806 243 AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (365)
Q Consensus 243 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~ 322 (365)
++...|.+..++..+|.++...|++ ++|+.+|+++++++|+++.+++++|.++..+|+..++...+..++
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 297 ALRLCPTHADSLNNLANIKREQGNI----------EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhccCCccchhhhHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555543 555555555555555555555555555555555555544444444
Q ss_pred CCCcc
Q 017806 323 EVSPN 327 (365)
Q Consensus 323 ~~~~~ 327 (365)
..+|+
T Consensus 367 ~l~P~ 371 (388)
T d1w3ba_ 367 RISPT 371 (388)
T ss_dssp TTCTT
T ss_pred HhCCC
Confidence 44443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.4e-23 Score=186.22 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=170.8
Q ss_pred ccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhh----------hhhhh-hHHHHHHHHHHHHHhCCCCHHHH
Q 017806 93 EGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEG----------RSRQR-ILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 93 ~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~-~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
..+|+..+++..+|.++ ...+.+++|+..++++|.++|.. +...| ++++|+.+++++++++|++..+|
T Consensus 37 ~~~p~~~~a~~~~~~~~-~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~ 115 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVL-QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115 (315)
T ss_dssp CCCHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 45677788999999999 59999999999999999999982 22334 69999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
+++|.++..+|+ +++|+.+|.++++++|++..+|+++|.++.. .|++++|+ ..|+
T Consensus 116 ~~~~~~~~~l~~--------------~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al-------~~~~ 170 (315)
T d2h6fa1 116 HHRRVLVEWLRD--------------PSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNEL-------QYVD 170 (315)
T ss_dssp HHHHHHHHHHTC--------------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHHH
T ss_pred HHHhHHHHhhcc--------------HHHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 8899
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
++++++|++..+|+++|.++...+.. ...+.+++|+..+.+++.++|++..+|+++|.++...|
T Consensus 171 ~al~~~p~n~~a~~~r~~~l~~~~~~----~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~ 234 (315)
T d2h6fa1 171 QLLKEDVRNNSVWNQRYFVISNTTGY----NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 234 (315)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCS----CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHCCccHHHHHHHHHHHHHcccc----chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence 99999999999999999999998874 34566799999999999999999999999999987655
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.1e-22 Score=183.96 Aligned_cols=183 Identities=27% Similarity=0.329 Sum_probs=171.7
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDAL 161 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 161 (365)
+..+|+++.++..+|.++ ...|++++|+..|++++...+. .+...|++++|+.+|+++++++|+++.++
T Consensus 196 l~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 274 (388)
T d1w3ba_ 196 VTLDPNFLDAYINLGNVL-KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274 (388)
T ss_dssp HHHCTTCHHHHHHHHHHH-HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHhCcccHHHHHHHhhhh-hccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 567899999999999999 4999999999999999988765 35566999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 017806 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (365)
Q Consensus 162 ~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~ 241 (365)
..+|.++...|+ +++|+..|++++...|.+...+..+|.++.. .|++++|+ ..|+
T Consensus 275 ~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~-------~~~~ 329 (388)
T d1w3ba_ 275 CNLANALKEKGS--------------VAEAEDCYNTALRLCPTHADSLNNLANIKRE----QGNIEEAV-------RLYR 329 (388)
T ss_dssp HHHHHHHHHHSC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHH-------HHHH
T ss_pred HHHHHHHHHcCC--------------HHHHHHHHHhhhccCCccchhhhHHHHHHHH----CCCHHHHH-------HHHH
Confidence 999999999999 9999999999999999999999999999999 99999999 7899
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 242 KAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 242 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
++++++|+++.+|+++|.+|..+|++ ++|+.+|+++++++|+++.+|.+||.+|..+|+
T Consensus 330 ~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 330 KALEVFPEFAAAHSNLASVLQQQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHTTTCC----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999997 999999999999999999999999999998874
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.2e-21 Score=176.28 Aligned_cols=198 Identities=17% Similarity=0.173 Sum_probs=172.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
++..|++++|+.+|+++++.+|+++.+|+.+|.++..+|+ +++|+.+|+++++++|++...|.++|
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~la 94 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ--------------ELLAISALRRCLELKPDNQTALMALA 94 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHhhhcccccccccccccc
Confidence 4667999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCC--
Q 017806 214 IAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWN-- 249 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~------------------------------------------A~~~~~~al~~~p~-- 249 (365)
.++.. .|++++|+..+++ |+..|.++++++|+
T Consensus 95 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~ 170 (323)
T d1fcha_ 95 VSFTN----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 170 (323)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred ccccc----cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 99999 9999999987554 67788899999987
Q ss_pred CHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcch-
Q 017806 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNE- 328 (365)
Q Consensus 250 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~- 328 (365)
++.++..+|.++...|++ ++|+..|++++..+|+++.+|.++|.++..+|+..++...+..++..+|..
T Consensus 171 ~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 171 DPDVQCGLGVLFNLSGEY----------DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccccchhhHHHHHHHHHH----------hhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 468899999999999996 999999999999999999999999999999999999988887777776653
Q ss_pred -HHHHHHHHHHHHHhcCccHHHHHHHHHhhhh
Q 017806 329 -LYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (365)
Q Consensus 329 -~~~~a~~~~~~a~~~~~~~~~~~~al~~~~~ 359 (365)
.|...+..+...+..+.+...+.+++.+.+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRK 272 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3444455555666666666666666665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.7e-21 Score=173.47 Aligned_cols=183 Identities=11% Similarity=0.069 Sum_probs=157.9
Q ss_pred hhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CccccCCCCchhhhHHHHH
Q 017806 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA-DNVSLDSTSPSKDALLEEA 191 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~a~~~~~~~~~~~~~A 191 (365)
..++.+|..++..++ ...+.+++|+.+++++|+++|.+..+|+++|.++..+| + +++|
T Consensus 39 ~p~~~~a~~~~~~~~-------~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~--------------~~ea 97 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVL-------QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD--------------LHEE 97 (315)
T ss_dssp CHHHHHHHHHHHHHH-------HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--------------HHHH
T ss_pred CHHHHHHHHHHHHHH-------HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcC--------------HHHH
Confidence 456777777776553 33467899999999999999999999999999999976 6 8999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhH
Q 017806 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (365)
Q Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 271 (365)
+.+|+++++++|++..+|+++|.++.. +|++++|+ ..|.++++++|++..+|+++|.++..+|++
T Consensus 98 l~~~~~al~~~p~~~~a~~~~~~~~~~----l~~~~eAl-------~~~~kal~~dp~n~~a~~~~~~~~~~~~~~---- 162 (315)
T d2h6fa1 98 MNYITAIIEEQPKNYQVWHHRRVLVEW----LRDPSQEL-------EFIADILNQDAKNYHAWQHRQWVIQEFKLW---- 162 (315)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHh----hccHHHHH-------HHHhhhhhhhhcchHHHHHHHHHHHHHHhh----
Confidence 999999999999999999999999999 99999999 789999999999999999999999999997
Q ss_pred HhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHH
Q 017806 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY 350 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 350 (365)
++|+.+|+++|+++|++..+|+++|.++...+... ....+..+..++.++..++|.+...
T Consensus 163 ------~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~-------------~~~~~~~ai~~~~~al~~~P~~~~~ 222 (315)
T d2h6fa1 163 ------DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN-------------DRAVLEREVQYTLEMIKLVPHNESA 222 (315)
T ss_dssp ------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC-------------SHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred ------HHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc-------------hhhhhHHhHHHHHHHHHhCCCchHH
Confidence 99999999999999999999999999998877432 1233455666666666666665443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=3.6e-20 Score=161.20 Aligned_cols=169 Identities=19% Similarity=0.190 Sum_probs=132.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
...|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++|+++.+++++|.
T Consensus 48 ~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 48 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAHLNRGI 113 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH--------------HHHhhhhhhHHHHHHhhhhhhHHHHHH
Confidence 455677888888888888888888888888888888888 888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHH----------------------
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE---------------------- 272 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~---------------------- 272 (365)
++.. +|++++|+ ..|+++++.+|++...+..++.++...+..+....
T Consensus 114 ~~~~----~g~~~~A~-------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
T d1xnfa_ 114 ALYY----GGRDKLAQ-------DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 182 (259)
T ss_dssp HHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred HHHH----HhhHHHHH-------HHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHH
Confidence 8888 88888888 66888888888888877777777766665321111
Q ss_pred ----hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccH
Q 017806 273 ----KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 347 (365)
Q Consensus 273 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 347 (365)
..+.++.+...+..++...|....+++++|.++...|+.. .|..+|.++...+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-------------------~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 183 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD-------------------SATALFKLAVANNVHN 242 (259)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH-------------------HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHH-------------------HHHHHHHHHHHcCCCC
Confidence 3466777777888888888888899999999999999664 4566667777777754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=6.7e-20 Score=159.49 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=148.3
Q ss_pred CCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 95 EDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNW 164 (365)
Q Consensus 95 ~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 164 (365)
++....+++.+|.++ ...|++++|+..|++++.++|+ ++...|++++|+.+|+++++++|+++.++.++
T Consensus 33 ~~~~a~~~~~~G~~y-~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 111 (259)
T d1xnfa_ 33 DDERAQLLYERGVLY-DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 111 (259)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence 455678999999999 4999999999999999999987 45667999999999999999999999999999
Q ss_pred HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH-----------
Q 017806 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW----------- 233 (365)
Q Consensus 165 g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~----------- 233 (365)
|.++..+|+ +++|+..|+++++++|.+...+..++.++.. .+....+....
T Consensus 112 g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T d1xnfa_ 112 GIALYYGGR--------------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK----LDEKQAKEVLKQHFEKSDKEQW 173 (259)
T ss_dssp HHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHSCCCST
T ss_pred HHHHHHHhh--------------HHHHHHHHHHHHhhccccHHHHHHHHHHHHH----hhhHHHHHHHHHHhhccchhhh
Confidence 999999999 9999999999999999999988888887777 66544443321
Q ss_pred ------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 234 ------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (365)
Q Consensus 234 ------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (365)
..+...+...+...|....+|+++|.+|..+|++ ++|+.+|++++..+|++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 174 GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL----------DSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCCTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCCH
Confidence 1233444445556677788999999999999996 999999999999999875
Q ss_pred HHH
Q 017806 296 RAI 298 (365)
Q Consensus 296 ~~~ 298 (365)
..+
T Consensus 244 ~~~ 246 (259)
T d1xnfa_ 244 VEH 246 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=3.6e-18 Score=154.61 Aligned_cols=169 Identities=11% Similarity=-0.007 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDAL-YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 218 (365)
+++|+..+.++++.+|.+..++ ..+|.++...+. +++|+.+++++++++|++..+|+++|.++..
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVA--------------PAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC--------------HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc--------------cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4444444555544444444443 233344444444 4445554455554455444445555554444
Q ss_pred HHHhcCCHHHHHHHHHH-----------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhh
Q 017806 219 RAKMRGRTKEAEELWKQ-----------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQT 275 (365)
Q Consensus 219 ~~~~~g~~~~A~~~~~~-----------------------A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 275 (365)
+|++++|+..+.+ ++..|.+++..+|.+...+.++|.++... +
T Consensus 191 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~----------~ 256 (334)
T d1dcea1 191 ----LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL----------Q 256 (334)
T ss_dssp ----HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHH----------H
T ss_pred ----hcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHH----------h
Confidence 4444444443211 23333333334444444444444444444 4
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHHHHHHH
Q 017806 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALR 355 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~al~ 355 (365)
++.+|+..|.+++..+|++..++..+|.++..+|+. ..+..++.++..++|....|...++
T Consensus 257 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-------------------~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYE-------------------KETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGH-------------------HHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCH-------------------HHHHHHHHHHHHHCcccHHHHHHHH
Confidence 468899999999999998889999999998888855 5577788899999998887776653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.7e-17 Score=126.75 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
-+...|..++..|+ |++|+.+|+++|+++|+++.+|+++|.++.. +|++++|+ ..
T Consensus 5 ~l~~~g~~~~~~g~--------------~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~~ 59 (117)
T d1elwa_ 5 ELKEKGNKALSVGN--------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAY-------ED 59 (117)
T ss_dssp HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------HH
T ss_pred HHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCcchhhhhcccccccc----cccccccc-------hh
Confidence 35678999999999 9999999999999999999999999999999 99999999 88
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 306 (365)
|.++++++|+++.+|+++|.++..+|++ ++|+..|+++++++|+++.++.+++.+..
T Consensus 60 ~~~al~~~p~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 60 GCKTVDLKPDWGKGYSRKAAALEFLNRF----------EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred hhhHHHhccchhhHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999996 99999999999999999999999988753
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.9e-17 Score=135.31 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHH
Q 017806 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196 (365)
Q Consensus 117 ~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~ 196 (365)
.+|+.++.+++. +...|+|++|++.|.+ +.|.++.+|+++|.+|..+|+ +++|+.+|+
T Consensus 3 ~~~~~l~~~g~~-----~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~--------------~~~A~~~~~ 60 (192)
T d1hh8a_ 3 VEAISLWNEGVL-----AADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKN--------------MTEAEKAFT 60 (192)
T ss_dssp HHHHHHHHHHHH-----HHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC--------------chhHHHHHH
Confidence 355666655543 3566889999999986 456788999999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHH
Q 017806 197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----------------PQALNNWGLA 260 (365)
Q Consensus 197 ~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~ 260 (365)
++++++|+++.+|+++|.++.. +|++++|+ ..|++++...+.+ ..+++++|.+
T Consensus 61 kAl~ldp~~~~a~~~~g~~~~~----~g~~~~A~-------~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~ 129 (192)
T d1hh8a_ 61 RSINRDKHLAVAYFQRGMLYYQ----TEKYDLAI-------KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 129 (192)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHh----hccHHHHH-------HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHH
Confidence 9999999999999999999999 99999999 5566666554332 5789999999
Q ss_pred HHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017806 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (365)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 307 (365)
+..+|++ ++|++.|.+|+.+.|+........+.....
T Consensus 130 ~~~~~~~----------~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 130 YAKKEEW----------KKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHTTCH----------HHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHCCCH----------HHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 9999996 999999999999998865555555444333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.2e-16 Score=128.80 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~ 239 (365)
.+...|..++..|+ |++|+.+|+++++++|+++.+|+++|.++.. +|++++|+ ..
T Consensus 12 ~l~~~gn~~~~~~~--------------y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~-------~~ 66 (159)
T d1a17a_ 12 ELKTQANDYFKAKD--------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYAL-------GD 66 (159)
T ss_dssp HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------HH
T ss_pred HHHHHHHHHHHcCC--------------HHHHHHHhhhccccchhhhhhhhhhHHHHHh----ccccchHH-------HH
Confidence 45678999999999 9999999999999999999999999999999 99999999 88
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 240 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
|+++++++|+++.+|+++|.++..+|++ ++|+.+|++++.++|+++.++..++.+....+
T Consensus 67 ~~kal~~~p~~~~a~~~~g~~~~~~g~~----------~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 126 (159)
T d1a17a_ 67 ATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNKIVK 126 (159)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 99999999999999999999999988866554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.4e-16 Score=126.04 Aligned_cols=109 Identities=19% Similarity=0.159 Sum_probs=102.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 017806 132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (365)
Q Consensus 132 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 211 (365)
..++..|+|++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+|.+
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~kal~~~p~~~~a~~~ 83 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------------YGYALGDATRAIELDKKYIKGYYR 83 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc--------------cchHHHHHHHHHHHcccchHHHHH
Confidence 356788999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+|.++.. +|++++|+ .+|++++.++|+++.++..++.+....+
T Consensus 84 ~g~~~~~----~g~~~eA~-------~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 126 (159)
T d1a17a_ 84 RAASNMA----LGKFRAAL-------RDYETVVKVKPHDKDAKMKYQECNKIVK 126 (159)
T ss_dssp HHHHHHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999 99999999 8899999999999999999888765543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=9.3e-17 Score=122.49 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=99.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.++..|++++|+.+|.++|+.+|.++.+|.++|.++..+|+ +++|+..|+++++++|+++.+|+++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~~ 77 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------------YQKAYEDGCKTVDLKPDWGKGYSRK 77 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccccc--------------ccccchhhhhHHHhccchhhHHHHH
Confidence 35677899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 262 (365)
|.++.. +|++++|+ ..|+++++++|+++.++.+++.+..
T Consensus 78 g~~~~~----~~~~~~A~-------~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 78 AAALEF----LNRFEEAK-------RTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHH----TTCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999 99999999 8899999999999999999988753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.71 E-value=1.1e-16 Score=126.83 Aligned_cols=127 Identities=16% Similarity=0.190 Sum_probs=109.3
Q ss_pred CchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK---EAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~---~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
...+.+.|++|+..|+++++++|+++.+++++|.++.. .+++. ++.+.+++|+..|+++++++|+++.+|+++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~----~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l 81 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 81 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH----hhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence 44556669999999999999999999999999999988 66554 456678889999999999999999999999
Q ss_pred HHHHHHhcCcchhH-HhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 258 GLALQELSAIVPAR-EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 258 g~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
|.+|..+|++.... ...+.|++|+.+|+++++++|++...+.+|+.+....+..
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~ 136 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH 136 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999998753322 3557789999999999999999999999999998766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.70 E-value=3.2e-16 Score=124.12 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=110.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (365)
+.+.+.|++|+..|+++++++|+++.+++++|.++..++++..+ ....+.+++|+.+|+++++++|+++.+|+++|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~----~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI----SDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence 34567899999999999999999999999999999977652211 12345589999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 214 ~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
.+|....+..++...+...|++|+++|+++++++|++..++..++.+....+.
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~ 135 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL 135 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence 99998555566788889999999999999999999999999999988766555
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=9.8e-17 Score=133.76 Aligned_cols=117 Identities=17% Similarity=0.103 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
++..+...|..++..|+ |++|+.+|+++++++|+++.+|+++|.+|.. +|++++|+
T Consensus 3 ~a~~l~~~Gn~~~~~g~--------------~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai------ 58 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRK--------------YPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQAL------ 58 (201)
T ss_dssp CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH------
T ss_pred hHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh----hhhhhhhh------
Confidence 45668899999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017806 237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 308 (365)
..|+++++++|+++.+|+++|.+|..+|++ ++|+.+|++++.++|++...+..++..+...
T Consensus 59 -~~~~~al~l~p~~~~a~~~lg~~~~~l~~~----------~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 59 -ADCRRALELDGQSVKAHFFLGQCQLEMESY----------DEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp -HHHHHHTTSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred -HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 889999999999999999999999999996 9999999999999886554444344443333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4e-15 Score=123.53 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017806 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (365)
Q Consensus 161 ~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~ 240 (365)
+++.|.++...|+ |++|+..|.+ +.|.++.+|+++|.++.. +|++++|+ .+|
T Consensus 8 l~~~g~~~~~~~d--------------~~~Al~~~~~---i~~~~~~~~~nlG~~~~~----~g~~~~A~-------~~~ 59 (192)
T d1hh8a_ 8 LWNEGVLAADKKD--------------WKGALDAFSA---VQDPHSRICFNIGCMYTI----LKNMTEAE-------KAF 59 (192)
T ss_dssp HHHHHHHHHHTTC--------------HHHHHHHHHT---SSSCCHHHHHHHHHHHHH----TTCHHHHH-------HHH
T ss_pred HHHHHHHHHHCCC--------------HHHHHHHHHh---cCCCCHHHHHHHHHHHHH----cCCchhHH-------HHH
Confidence 4578999999999 9999999986 467789999999999999 99999999 889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHH
Q 017806 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF----------------HRAIYNLGTV 304 (365)
Q Consensus 241 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~ 304 (365)
+++++++|+++.+|+++|.++.++|++ ++|+..|++|+...+.+ ..+++++|.+
T Consensus 60 ~kAl~ldp~~~~a~~~~g~~~~~~g~~----------~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~ 129 (192)
T d1hh8a_ 60 TRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 129 (192)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhccH----------HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHH
Confidence 999999999999999999999999996 99999999999875543 4788999999
Q ss_pred HHHhhhhhhhh
Q 017806 305 LYGLAEDTLRT 315 (365)
Q Consensus 305 ~~~~g~~~~a~ 315 (365)
+..+|+..++.
T Consensus 130 ~~~~~~~~~A~ 140 (192)
T d1hh8a_ 130 YAKKEEWKKAE 140 (192)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHCCCHHHHH
Confidence 99999775433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.2e-15 Score=137.60 Aligned_cols=163 Identities=12% Similarity=0.003 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017806 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (365)
Q Consensus 140 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 219 (365)
.++|+.++++++..+|++..+|+.++.++..+++ .+......+++++|+.+|+++++.+|++..+|+.+|.++..
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~----~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~- 119 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLET----EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR- 119 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-
Confidence 4799999999999999999999999999888776 34455667889999999999999999999999999999988
Q ss_pred HHhcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 220 AKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALN-NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 220 ~~~~g~--~~~A~~~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
.++ +++|+ ..+.++++.+|++..+|. .+|.++...+.+ ++|+.++++++.++|++..
T Consensus 120 ---~~~~~~~~a~-------~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~----------~~Al~~~~~~i~~~p~~~~ 179 (334)
T d1dcea1 120 ---LPEPNWAREL-------ELCARFLEADERNFHCWDYRRFVAAQAAVAP----------AEELAFTDSLITRNFSNYS 179 (334)
T ss_dssp ---CSSCCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH----------HHHHHHHHTTTTTTCCCHH
T ss_pred ---hccccHHHHH-------HHHHHHHhhCchhhhhhhhHHHHHHHhcccc----------HHHHHHHHHHHHcCCCCHH
Confidence 765 77888 889999999999988864 677888888886 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCcCCCCCCCcc
Q 017806 297 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (365)
+|+++|.++..+|+...+......+....+.
T Consensus 180 a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 210 (334)
T d1dcea1 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 210 (334)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH
Confidence 9999999999999998888777666655443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.1e-16 Score=149.53 Aligned_cols=178 Identities=15% Similarity=0.086 Sum_probs=121.9
Q ss_pred hccCCCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------------------------------
Q 017806 92 SEGEDSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE--------------------------------------- 132 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------- 132 (365)
+...|+.+++++++|.++. ..|++.+| |++++..+|.
T Consensus 13 ~~l~p~~a~a~~~la~~~~-~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~ 88 (497)
T d1ya0a1 13 EVLKADMTDSKLGPAEVWT-SRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQ 88 (497)
T ss_dssp HHHHGGGTCSSSCSSSSHH-HHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHH
T ss_pred HHcCCCCHHHHhhHHHHHH-HHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccccCccHHHHH
Confidence 3457778888889999984 88888776 6666665543
Q ss_pred ----h--hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH
Q 017806 133 ----G--RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (365)
Q Consensus 133 ----~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (365)
+ ....+.|+.|+..|.+++.++|.+..++.++|.++...|+ +++|+..+++++.++| .
T Consensus 89 ~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~~--~ 152 (497)
T d1ya0a1 89 ANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH--------------TSAIVKPQSSSCSYIC--Q 152 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---------------------------------------------CCHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC--------------HHHHHHHHHHHhCCCH--H
Confidence 0 1123556666666666677889999999999999999998 9999999999998776 4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHH
Q 017806 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (365)
Q Consensus 207 ~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (365)
.++.++|.++.. .|++++|+ .+|++|++++|++..+|+++|.++...|+. .+|+.+|.+
T Consensus 153 ~~~~~LG~l~~~----~~~~~~A~-------~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~----------~~A~~~y~r 211 (497)
T d1ya0a1 153 HCLVHLGDIARY----RNQTSQAE-------SYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHH----cccHHHHH-------HHHHHHHHHCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHH
Confidence 688999999999 99999999 889999999999999999999999999996 999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 287 AIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 287 al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
++..+|.++.++.||+.++....+
T Consensus 212 al~~~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 212 SIAVKFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999877653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6.4e-15 Score=119.81 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHh
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---------------HDAFYNWAIAISDRAKM 222 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~ 222 (365)
+..+...|..++..|+ |++|+.+|++++.+.|.. ..++.++|.+|..
T Consensus 13 a~~l~~~G~~~~~~~~--------------~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k---- 74 (170)
T d1p5qa1 13 STIVKERGTVYFKEGK--------------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK---- 74 (170)
T ss_dssp HHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh----
Confidence 4567889999999999 999999999999997753 3568899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
+|++++|+ ..+++++.++|+++.+|+++|.+|..+|++ ++|+.+|+++++++|+++.+...++
T Consensus 75 ~~~~~~A~-------~~~~~al~~~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~P~n~~~~~~l~ 137 (170)
T d1p5qa1 75 LQAFSAAI-------ESCNKALELDSNNEKGLSRRGEAHLAVNDF----------ELARADFQKVLQLYPNNKAAKTQLA 137 (170)
T ss_dssp TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred hhhccccc-------chhhhhhhccccchhhhHHHHHHHHHhhhH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999 889999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHhhhhh
Q 017806 303 TVLYGLAEDT 312 (365)
Q Consensus 303 ~~~~~~g~~~ 312 (365)
.+....++..
T Consensus 138 ~~~~~~~~~~ 147 (170)
T d1p5qa1 138 VCQQRIRRQL 147 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.61 E-value=1.4e-14 Score=115.62 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHHHh
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------------HDAFYNWAIAISDRAKM 222 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~~~~ 222 (365)
..+...|..++..|+ |.+|+..|++++.+.+.. ..++.|+|.+|..
T Consensus 18 ~~~~~~G~~~f~~~~--------------y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~---- 79 (153)
T d2fbna1 18 FDIKEEGNEFFKKNE--------------INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK---- 79 (153)
T ss_dssp HHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH----
Confidence 446778999999999 999999999999876542 2468899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
+|++++|+ ..|+++++++|++..+|+++|.+|..+|++ ++|+.+|+++++++|++..+...++
T Consensus 80 l~~~~~Al-------~~~~~al~~~p~~~ka~~~~g~~~~~lg~~----------~~A~~~~~~al~l~P~n~~~~~~l~ 142 (153)
T d2fbna1 80 NKDYPKAI-------DHASKVLKIDKNNVKALYKLGVANMYFGFL----------EEAKENLYKAASLNPNNLDIRNSYE 142 (153)
T ss_dssp TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred hcccchhh-------hhhhccccccchhhhhhHHhHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999 789999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHhhh
Q 017806 303 TVLYGLAE 310 (365)
Q Consensus 303 ~~~~~~g~ 310 (365)
.+..++.+
T Consensus 143 ~~~~kl~~ 150 (153)
T d2fbna1 143 LCVNKLKE 150 (153)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.9e-15 Score=113.34 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=100.2
Q ss_pred HHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017806 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (365)
Q Consensus 163 ~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~ 242 (365)
+++..+...++ +++|++.|++++.++|+++.+++++|.++.. .++... +++|+..|++
T Consensus 4 ~l~n~~~~~~~--------------l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~----s~~~~d----~~~Ai~~l~~ 61 (122)
T d1nzna_ 4 AVLNELVSVED--------------LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----TRYNDD----IRKGIVLLEE 61 (122)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----SSSHHH----HHHHHHHHHH
T ss_pred HHHHHhcCHHH--------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcchHH----HHHHHHHHHH
Confidence 56667777778 9999999999999999999999999999976 665543 2334488999
Q ss_pred HHhcCCCC--HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 017806 243 AVQLNWNS--PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (365)
Q Consensus 243 al~~~p~~--~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 310 (365)
++..+|+. +.+|+++|.+|..+|++ ++|+.+|+++|+++|++..+...++.+...+++
T Consensus 62 ~l~~~~~~~~~~~~~~Lg~~y~~~g~~----------~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 62 LLPKGSKEEQRDYVFYLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCchHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence 99988765 56999999999999996 999999999999999999999999988877653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=8.7e-16 Score=127.86 Aligned_cols=109 Identities=20% Similarity=0.062 Sum_probs=94.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017806 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (365)
Q Consensus 133 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (365)
.++..|+|++|+.+|+++|+++|.++.+|.++|.+|..+|+ +++|+.+|+++++++|+++.+|+++
T Consensus 13 ~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~--------------~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------------PEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh--------------hhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 44677899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 017806 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (365)
Q Consensus 213 g~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 266 (365)
|.++.. +|++++|+ ..|+++++++|++...+...+..+...+.
T Consensus 79 g~~~~~----l~~~~~A~-------~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 79 GQCQLE----MESYDEAI-------ANLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHH----TTCHHHHH-------HHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 999999 99999999 66888888777655544444444444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.59 E-value=8.6e-15 Score=110.39 Aligned_cols=95 Identities=14% Similarity=0.151 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017806 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (365)
Q Consensus 159 ~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~ 238 (365)
..++.+|.++...|+ +++|+.+|++++.++|+++.+|..+|.++.. .|++++|+ .
T Consensus 17 ~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~-------~ 71 (112)
T d1hxia_ 17 ENPMEEGLSMLKLAN--------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAI-------I 71 (112)
T ss_dssp SCHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHH-------H
T ss_pred HHHHHHHHHHHHHhh--------------hHHHHHHHhhhcccccccchhhhhhhhhhhh----hhhHHHhh-------c
Confidence 346889999999999 9999999999999999999999999999999 99999999 8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 239 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
+|+++++++|+++.+|+++|.+|..+|++ ++|+++|++.|
T Consensus 72 ~~~~al~~~p~~~~a~~~la~~y~~~g~~----------~~A~~~l~~~l 111 (112)
T d1hxia_ 72 ALNHARMLDPKDIAVHAALAVSHTNEHNA----------NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred ccccccccccccccchHHHHHHHHHCCCH----------HHHHHHHHHHh
Confidence 89999999999999999999999999996 99999999976
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.3e-15 Score=113.61 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~ 237 (365)
+..+.++|..++..|+ |++|+.+|+++++++|+++.+++++|.+|.. +|+|++|+
T Consensus 4 a~~~k~~G~~~~~~~~--------------y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~------- 58 (128)
T d1elra_ 4 ALKEKELGNDAYKKKD--------------FDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCR------- 58 (128)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH-------
T ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHHhHHHHHHH----cCchHHHH-------
Confidence 3457799999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017806 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (365)
Q Consensus 238 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 304 (365)
..|+++++++|++...|..+|.+|..+|+. ....++|++|+.+|++++..+++ +.+...+..+
T Consensus 59 ~~~~~al~l~~~~~~~~~~~a~~~~~lg~~---~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~ 121 (128)
T d1elra_ 59 ELCEKAIEVGRENREDYRQIAKAYARIGNS---YFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121 (128)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 778888888888776666666655555543 44445579999999999999875 5555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.59 E-value=1.6e-14 Score=117.28 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHhc
Q 017806 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL----------------CPTLHDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 160 ~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~ 223 (365)
.+...|..++..|+ |.+|+..|++++++ +|.+..++.++|.++.. +
T Consensus 29 ~~~~~~~~~~~~~~--------------y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~ 90 (169)
T d1ihga1 29 DLKNIGNTFFKSQN--------------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK----M 90 (169)
T ss_dssp HHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh----h
Confidence 35678999999999 99999999999864 45667789999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 303 (365)
|++++|+ ..|+++++++|+++.+|+++|.+|..+|++ ++|+..|+++++++|++..++..|+.
T Consensus 91 ~~~~~Ai-------~~~~~al~~~p~~~~a~~~~g~~~~~l~~~----------~~A~~~~~~al~l~p~n~~~~~~l~~ 153 (169)
T d1ihga1 91 SDWQGAV-------DSCLEALEIDPSNTKALYRRAQGWQGLKEY----------DQALADLKKAQEIAPEDKAIQAELLK 153 (169)
T ss_dssp TCHHHHH-------HHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccchhh-------hhhhhhhhhhhhhhhHHHhHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999 789999999999999999999999999996 99999999999999999999999999
Q ss_pred HHHHhhhhh
Q 017806 304 VLYGLAEDT 312 (365)
Q Consensus 304 ~~~~~g~~~ 312 (365)
+...+....
T Consensus 154 ~~~~l~~~~ 162 (169)
T d1ihga1 154 VKQKIKAQK 162 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=1.1e-14 Score=128.91 Aligned_cols=183 Identities=9% Similarity=0.027 Sum_probs=144.7
Q ss_pred hhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCccccCCCCchhh
Q 017806 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKD 185 (365)
Q Consensus 112 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~ 185 (365)
..+++++|.++|.++- ..+...+++++|+.+|.+++++. +....++.++|.+|..+|+
T Consensus 29 ~~~~~~~Aa~~y~~aa----~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~------------ 92 (290)
T d1qqea_ 29 DSYKFEEAADLCVQAA----TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN------------ 92 (290)
T ss_dssp SHHHHHHHHHHHHHHH----HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------
T ss_pred ccccHHHHHHHHHHHH----HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC------------
Confidence 5678999999999984 34666789999999999999973 2335689999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 186 ALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
+++|+.+|++++++.+.. ..++.++|.++... .|++++|+..|++|++.+... ...+....++.++|.
T Consensus 93 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~A~~l~~~~-~~~~~~~~~~~~la~ 166 (290)
T d1qqea_ 93 --SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCAD 166 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHHHhc-CchhhhhhHHHHHHH
Confidence 999999999999986554 67788999888540 599999997777776655431 111223567999999
Q ss_pred HHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH-------RAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
++..+|++ ++|+..|++++...+.+. ..+.++|.++...|+...+...+..+....|
T Consensus 167 ~~~~~g~y----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 167 LKALDGQY----------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHTTCH----------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHcChH----------HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999996 999999999999987663 4567889999999988877666555555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.58 E-value=6.7e-14 Score=113.41 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHh
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKM 222 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~ 222 (365)
+..+...|..++..|+ |.+|+.+|++++.+.+. ...++.++|.++..
T Consensus 15 a~~~~e~G~~~~~~~~--------------~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~---- 76 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGK--------------YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK---- 76 (168)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH----
Confidence 4557889999999999 99999999999986443 23568899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (365)
Q Consensus 223 ~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 302 (365)
+|++.+|+ ..+++++.++|++..+|+++|.+|..+|++ ++|+.+|++++.++|++..++..++
T Consensus 77 l~~~~~Ai-------~~~~~al~l~p~~~~a~~~~~~~~~~l~~~----------~~A~~~~~~al~l~P~n~~~~~~l~ 139 (168)
T d1kt1a1 77 LREYTKAV-------ECCDKALGLDSANEKGLYRRGEAQLLMNEF----------ESAKGDFEKVLEVNPQNKAARLQIF 139 (168)
T ss_dssp TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hhhcccch-------hhhhhhhhcccchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999 789999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHhhhhh
Q 017806 303 TVLYGLAEDT 312 (365)
Q Consensus 303 ~~~~~~g~~~ 312 (365)
.+...+++..
T Consensus 140 ~~~~~~~~~~ 149 (168)
T d1kt1a1 140 MCQKKAKEHN 149 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHH
Confidence 9988877554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.8e-15 Score=112.55 Aligned_cols=110 Identities=12% Similarity=0.015 Sum_probs=97.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC--HHHHHH
Q 017806 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYN 211 (365)
Q Consensus 134 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~ 211 (365)
....+++++|++.|++++.++|.++.+++++|.++...++ .+++++|+..|++++..+|.+ ..+|++
T Consensus 9 ~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-----------~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------NDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------HHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 3556899999999999999999999999999999986443 223889999999999998765 568999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 212 lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
||.+|.. +|++++|+ ++|+++++++|++..+...++.+..+..
T Consensus 78 Lg~~y~~----~g~~~~A~-------~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 78 LAVGNYR----LKEYEKAL-------KYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HhhhHHHH-------HHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 9999999 99999999 8899999999999999999998887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.58 E-value=3.9e-15 Score=120.95 Aligned_cols=132 Identities=18% Similarity=0.102 Sum_probs=113.3
Q ss_pred HHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCC
Q 017806 102 SFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (365)
Q Consensus 102 ~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~ 181 (365)
+...|..++ ..|++.+|+..|++++...+.. .+.....+...++|....++.++|.++..+|+
T Consensus 30 ~~~~~~~~~-~~~~y~~Ai~~y~~al~~~~~~--------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------- 92 (169)
T d1ihga1 30 LKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGS--------RAAAEDADGAKLQPVALSCVLNIGACKLKMSD-------- 92 (169)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH--------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhh--------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc--------
Confidence 455677774 8899999999999998754432 23333345556678888999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017806 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (365)
Q Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 261 (365)
|++|+..|+++|+++|+++.+|+++|.++.. +|++++|+ ..|+++++++|++..++..++.+.
T Consensus 93 ------~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----l~~~~~A~-------~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 93 ------WQGAVDSCLEALEIDPSNTKALYRRAQGWQG----LKEYDQAL-------ADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp ------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------cchhhhhhhhhhhhhhhhhhHHHhHHHHHHH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 889999999999999999999998
Q ss_pred HHhcCc
Q 017806 262 QELSAI 267 (365)
Q Consensus 262 ~~~~~~ 267 (365)
..+...
T Consensus 156 ~~l~~~ 161 (169)
T d1ihga1 156 QKIKAQ 161 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.9e-14 Score=115.79 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=106.0
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccC
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
...+...|..++ ..|++++|+..|++++...+...............+ ...++.++|.||..+|+
T Consensus 13 a~~l~~~G~~~~-~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~---------~~~~~~nla~~y~k~~~----- 77 (170)
T d1p5qa1 13 STIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL---------RLASHLNLAMCHLKLQA----- 77 (170)
T ss_dssp HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH---------HHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchh---------HHHHHHHHHHHHHhhhh-----
Confidence 344556677775 777888888888777776654321111111111111 13467899999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
|++|+.+++++|.++|+++.+++++|.++.. +|++++|+ ..|+++++++|+++.+...++
T Consensus 78 ---------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~-------~~~~~al~l~P~n~~~~~~l~ 137 (170)
T d1p5qa1 78 ---------FSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELAR-------ADFQKVLQLYPNNKAAKTQLA 137 (170)
T ss_dssp ---------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCSSCHHHHHHHH
T ss_pred ---------cccccchhhhhhhccccchhhhHHHHHHHHH----hhhHHHHH-------HHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 889999999999999999999
Q ss_pred HHHHHhcCc
Q 017806 259 LALQELSAI 267 (365)
Q Consensus 259 ~~~~~~~~~ 267 (365)
.+....++.
T Consensus 138 ~~~~~~~~~ 146 (170)
T d1p5qa1 138 VCQQRIRRQ 146 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.57 E-value=4.5e-14 Score=112.61 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=102.7
Q ss_pred HHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCC
Q 017806 100 DASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179 (365)
Q Consensus 100 ~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~ 179 (365)
..+...|..++ ..|++.+|+..|++++...+...... +.........+. ..++.++|.+|..+|+
T Consensus 18 ~~~~~~G~~~f-~~~~y~~A~~~Y~~al~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~Nla~~~~~l~~------ 82 (153)
T d2fbna1 18 FDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWD---DQILLDKKKNIE-----ISCNLNLATCYNKNKD------ 82 (153)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCC---CHHHHHHHHHHH-----HHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcchhhhh---hHHHHHhhhhHH-----HHHHhhHHHHHHHhcc------
Confidence 34555666664 77777777777777776554422111 011111111111 3478899999999999
Q ss_pred CCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017806 180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (365)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 259 (365)
+++|+.+|+++++++|++..+|+++|.++.. +|++++|+ .+|+++++++|++..++..++.
T Consensus 83 --------~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~-------~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 83 --------YPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAK-------ENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp --------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHH
T ss_pred --------cchhhhhhhccccccchhhhhhHHhHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 8899999999999999999999
Q ss_pred HHHHhcC
Q 017806 260 ALQELSA 266 (365)
Q Consensus 260 ~~~~~~~ 266 (365)
+..++++
T Consensus 144 ~~~kl~~ 150 (153)
T d2fbna1 144 CVNKLKE 150 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.56 E-value=5e-14 Score=114.17 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=107.9
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccC
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD 178 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~ 178 (365)
...+...|..++ ..|++.+|+..|.+++...+...............+ ...++.++|.||..+|+
T Consensus 15 a~~~~e~G~~~~-~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~---------~~~~~~Nla~~~~~l~~----- 79 (168)
T d1kt1a1 15 AAIVKEKGTVYF-KGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF---------LLAAFLNLAMCYLKLRE----- 79 (168)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH---------HHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchh---------HHHHHHhHHHHHHHhhh-----
Confidence 355666788885 888888888888888776544322211122222211 24568899999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017806 179 STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (365)
Q Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg 258 (365)
+++|+.+|++++.++|++..+++++|.++.. +|++++|+ .+|+++++++|++..++..++
T Consensus 80 ---------~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~-------~~~~~al~l~P~n~~~~~~l~ 139 (168)
T d1kt1a1 80 ---------YTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAK-------GDFEKVLEVNPQNKAARLQIF 139 (168)
T ss_dssp ---------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHSCTTCHHHHHHHH
T ss_pred ---------cccchhhhhhhhhcccchHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 889999999999999999999
Q ss_pred HHHHHhcCc
Q 017806 259 LALQELSAI 267 (365)
Q Consensus 259 ~~~~~~~~~ 267 (365)
.+....+..
T Consensus 140 ~~~~~~~~~ 148 (168)
T d1kt1a1 140 MCQKKAKEH 148 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 998887764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.6e-14 Score=134.28 Aligned_cols=192 Identities=13% Similarity=0.051 Sum_probs=114.5
Q ss_pred HHHHHHHHhhccChh----------hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH-----------HHHHHHhcCccc
Q 017806 118 AAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNW-----------ALVLQESADNVS 176 (365)
Q Consensus 118 ~A~~~~~~al~~~~~----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----------g~~~~~~~~~~~ 176 (365)
+|+++|++|+.+.|+ .+..++++++| |+++|..+|+...++... ...+....+...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~ 80 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 789999999998877 35566888776 899999999876553222 222222222111
Q ss_pred cCCCC----------chhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Q 017806 177 LDSTS----------PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (365)
Q Consensus 177 a~~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~ 246 (365)
+.... ....+.|+.++..|++++.++|.+...+.++|.++.. .|++.+|+ ..+.+++..
T Consensus 81 ~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----~~~~~~A~-------~~~~~al~~ 149 (497)
T d1ya0a1 81 NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----QTHTSAIV-------KPQSSSCSY 149 (497)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------------------------------------------CCHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----CCCHHHHH-------HHHHHHhCC
Confidence 11111 1123567777777777788899999999999999999 99999999 667777766
Q ss_pred CCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCc
Q 017806 247 NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (365)
Q Consensus 247 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~ 326 (365)
+| ..++.++|.++...+++ ++|+.+|++|++++|+++.+|++||.++...|+...
T Consensus 150 ~~--~~~~~~LG~l~~~~~~~----------~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~------------- 204 (497)
T d1ya0a1 150 IC--QHCLVHLGDIARYRNQT----------SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT------------- 204 (497)
T ss_dssp HH--HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHH-------------
T ss_pred CH--HHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHH-------------
Confidence 65 47899999999999996 999999999999999999999999999999997754
Q ss_pred chHHHHHHHHHHHHHhcCccHHHHHHHH
Q 017806 327 NELYSQSAIYIAAAHALKPSYSVYSSAL 354 (365)
Q Consensus 327 ~~~~~~a~~~~~~a~~~~~~~~~~~~al 354 (365)
+..+|.++...++.+......|
T Consensus 205 ------A~~~y~ral~~~~~~~~a~~nL 226 (497)
T d1ya0a1 205 ------TIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp ------HHHHHHHHHSSSBCCHHHHHHH
T ss_pred ------HHHHHHHHHhCCCCCHHHHHHH
Confidence 4455566666666555554444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.48 E-value=1.3e-13 Score=103.72 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=77.4
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+..|++++|+.+|+++++.+|+++.+|..+|.++...|+ +++|+.+|+++++++|++..+|++||.
T Consensus 27 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~a~~~la~ 92 (112)
T d1hxia_ 27 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------------DGLAIIALNHARMLDPKDIAVHAALAV 92 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh--------------HHHhhcccccccccccccccchHHHHH
Confidence 567889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 017806 215 AISDRAKMRGRTKEAEELWK 234 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~ 234 (365)
++.. .|++++|++.++
T Consensus 93 ~y~~----~g~~~~A~~~l~ 108 (112)
T d1hxia_ 93 SHTN----EHNANAALASLR 108 (112)
T ss_dssp HHHH----HHHHHHHHHHHH
T ss_pred HHHH----CCCHHHHHHHHH
Confidence 9999 999999994433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=2.1e-13 Score=120.38 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=131.1
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCCC-----
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPED----- 157 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~~----- 157 (365)
.+.|...|.++ ...|++++|+..|.+++.+... ++...|++++|+.+|++++++.+..
T Consensus 37 a~~y~~aa~~y-~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 37 ADLCVQAATIY-RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHHH-HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence 45678889999 5999999999999999987421 4556799999999999999986654
Q ss_pred -HHHHHHHHHHHHH-hcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 158 -YDALYNWALVLQE-SADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 158 -~~~~~~lg~~~~~-~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
..++..+|.++.. .|+ +++|+.+|++++++.+. ...++.++|.++.. +|+|++|
T Consensus 116 ~~~~~~~l~~~~~~~~~~--------------~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A 177 (290)
T d1qqea_ 116 GANFKFELGEILENDLHD--------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEA 177 (290)
T ss_dssp HHHHHHHHHHHHHHTTCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHhHhhHHHH--------------HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHH
Confidence 6678899988865 588 99999999999987432 35679999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHHH
Q 017806 230 EELWKQATKNYEKAVQLNWNSP-------QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (365)
+ ..|++++...+... ..+.+.|.++...+++ ..|...|+++++++|.....
T Consensus 178 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~----------~~A~~~~~~~~~~~~~~~~s 235 (290)
T d1qqea_ 178 S-------DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA----------VAAARTLQEGQSEDPNFADS 235 (290)
T ss_dssp H-------HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH----------HHHHHHHHGGGCC-------
T ss_pred H-------HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCccch
Confidence 9 66888887776653 5677889999999996 99999999999999876543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.3e-13 Score=102.86 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHH
Q 017806 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285 (365)
Q Consensus 206 ~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (365)
+..+.++|..++. .|+|++|+ .+|+++++++|+++.++.++|.+|..+|++ ++|+..|+
T Consensus 4 a~~~k~~G~~~~~----~~~y~~Ai-------~~y~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~ 62 (128)
T d1elra_ 4 ALKEKELGNDAYK----KKDFDTAL-------KHYDKAKELDPTNMTYITNQAAVYFEKGDY----------NKCRELCE 62 (128)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHH-------HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcccHHHHHhHHHHHHHcCch----------HHHHHHHH
Confidence 3457789999999 99999999 889999999999999999999999999996 99999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCccHHHH
Q 017806 286 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY 350 (365)
Q Consensus 286 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 350 (365)
++|+++|++..++.++|.+|..+|+...+... |..+..+|.++...+++....
T Consensus 63 ~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~------------~~~A~~~~~kal~~~~~~~~~ 115 (128)
T d1elra_ 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEK------------YKDAIHFYNKSLAEHRTPDVL 115 (128)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhcCCCHHHH
Confidence 99999999999999999999999988776665 478888889998887765443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=8.6e-13 Score=117.64 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=131.0
Q ss_pred hHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh----------------hhhhhhhHHHHHHHHHHHHHhCCC------
Q 017806 99 TDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE----------------GRSRQRILTFAAKRYANAIERNPE------ 156 (365)
Q Consensus 99 ~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~A~~~~~~al~~~p~------ 156 (365)
..++..+|.++. ..|++++|+..|++++...+. .+...|++..|+..+.+++.+.+.
T Consensus 51 ~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~ 129 (366)
T d1hz4a_ 51 IVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 129 (366)
T ss_dssp HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchh
Confidence 357888999995 999999999999999887543 244558999999999999875421
Q ss_pred --CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 157 --DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 157 --~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
...++..+|.++...|+ ++.+..++.+++...+. ...++..++.++.. .+.+..+
T Consensus 130 ~~~~~~~~~la~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a 191 (366)
T d1hz4a_ 130 PMHEFLVRIRAQLLWAWAR--------------LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNA 191 (366)
T ss_dssp THHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcc--------------hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh----hhhHHHH
Confidence 24567889999999999 99999999999998664 35678888888888 9999999
Q ss_pred HHHHHHHHH----------------------------------HHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhH
Q 017806 230 EELWKQATK----------------------------------NYEKAVQLNWNS----PQALNNWGLALQELSAIVPAR 271 (365)
Q Consensus 230 ~~~~~~A~~----------------------------------~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~ 271 (365)
...+.++.. .+++++...+.+ ...+.++|.++...|++
T Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---- 267 (366)
T d1hz4a_ 192 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF---- 267 (366)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCH----
Confidence 877655433 333333333322 23344455555555553
Q ss_pred HhhhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhhhhhhh
Q 017806 272 EKQTIVRTAISKFRAAIQL------QFDFHRAIYNLGTVLYGLAEDTLRT 315 (365)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~a~ 315 (365)
++|+..|++++.. .|....++..+|.++...|+..++.
T Consensus 268 ------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (366)
T d1hz4a_ 268 ------EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 311 (366)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ------HHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 6666666666533 2334455666666666666554333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.40 E-value=2.2e-12 Score=102.84 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=93.1
Q ss_pred HHHHHHH--HHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHHhc
Q 017806 158 YDALYNW--ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------------HDAFYNWAIAISDRAKMR 223 (365)
Q Consensus 158 ~~~~~~l--g~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~~~~~ 223 (365)
..++..+ |..++..|+ |++|+..|++++++.|+. +.+|+++|.+|.. +
T Consensus 7 a~a~~~l~~g~~~~~~g~--------------y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~----l 68 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGE--------------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----L 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH----c
Confidence 3445555 778888899 999999999999998764 4679999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCC
Q 017806 224 GRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (365)
Q Consensus 224 g~~~~A~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (365)
|++++|+..+++|+..+.+.....++. ..+++++|.+|..+|++ ++|+..|++++++.|..
T Consensus 69 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~----------eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 69 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------AEAMPEFKKVVEMIEER 133 (156)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHC
T ss_pred CccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHhhHHh
Confidence 999999999999999998887777653 44789999999999996 99999999999996543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=1.8e-11 Score=108.67 Aligned_cols=185 Identities=8% Similarity=-0.032 Sum_probs=121.3
Q ss_pred hccCCCchHHHHhcC--------------CChhHhhhcHHHHHHHHHHhhcc-Chh----------hhhhhhhHHHHHHH
Q 017806 92 SEGEDSVTDASFSQG--------------NTPHQLAEQNNAAMELINSVTGV-DEE----------GRSRQRILTFAAKR 146 (365)
Q Consensus 92 ~~~~~~~~~a~~~~g--------------~~~~~~~g~~~~A~~~~~~al~~-~~~----------~~~~~~~~~~A~~~ 146 (365)
+...|.++..|+.-. .+. ...+..++|...|++++.. .|. ....+|+++.|...
T Consensus 43 l~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i 121 (308)
T d2onda1 43 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN-NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH-HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCchHHHHHHHh-hcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 455677777765533 233 2445567777777777764 222 12234777777777
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Q 017806 147 YANAIERNPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR 225 (365)
Q Consensus 147 ~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~ 225 (365)
|++++...|.+. .+|..++.+....|+ ++.|+..|++++...|.+...|...+...... .|+
T Consensus 122 ~~~~l~~~~~~~~~~w~~~~~~~~~~~~--------------~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~---~~~ 184 (308)
T d2onda1 122 YNRLLAIEDIDPTLVYIQYMKFARRAEG--------------IKSGRMIFKKAREDARTRHHVYVTAALMEYYC---SKD 184 (308)
T ss_dssp HHHHHTSSSSCTHHHHHHHHHHHHHHHC--------------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT---SCC
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---ccC
Confidence 777777777654 467777777777777 77777777777777777777777777654330 466
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 017806 226 TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH----RAIYNL 301 (365)
Q Consensus 226 ~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l 301 (365)
.+.|. ..|++++..+|+++..|..++..+...|+. +.|...|++++...|.++ ..|...
T Consensus 185 ~~~a~-------~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~----------~~aR~~fe~ai~~~~~~~~~~~~iw~~~ 247 (308)
T d2onda1 185 KSVAF-------KIFELGLKKYGDIPEYVLAYIDYLSHLNED----------NNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp HHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 66676 667777777777777777777777777775 777777777777665432 345555
Q ss_pred HHHHHHhhhh
Q 017806 302 GTVLYGLAED 311 (365)
Q Consensus 302 g~~~~~~g~~ 311 (365)
.......|+.
T Consensus 248 ~~fE~~~G~~ 257 (308)
T d2onda1 248 LAFESNIGDL 257 (308)
T ss_dssp HHHHHHHSCH
T ss_pred HHHHHHcCCH
Confidence 5544455543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=1.2e-10 Score=103.11 Aligned_cols=187 Identities=13% Similarity=0.048 Sum_probs=149.7
Q ss_pred hhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIER-NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAI 214 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~ 214 (365)
.+..++|...|++++.. .|.+...|...+.+....|+ ++.|...|++++...|.+ ..+|..++.
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~--------------~~~a~~i~~~~l~~~~~~~~~~w~~~~~ 142 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------------YEKVHSIYNRLLAIEDIDPTLVYIQYMK 142 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTSSSSCTHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 35678999999999975 78889999999999999999 999999999999999976 457999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
.... .|+++.|. ..|.++++..|.....|...+..... .|+. +.|...|++++...|+
T Consensus 143 ~~~~----~~~~~~ar-------~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~----------~~a~~i~e~~l~~~p~ 201 (308)
T d2onda1 143 FARR----AEGIKSGR-------MIFKKAREDARTRHHVYVTAALMEYYCSKDK----------SVAFKIFELGLKKYGD 201 (308)
T ss_dssp HHHH----HHCHHHHH-------HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH----------HHHHHHHHHHHHHHTT
T ss_pred HHHH----cCChHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHhhhh
Confidence 9998 99999999 77899999999999999999987665 4664 9999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhcCcCCCCCCC---cc---hHHHHHHHHHHHHHhcCccHHHHHHHHHhhh
Q 017806 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVS---PN---ELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (365)
Q Consensus 294 ~~~~~~~lg~~~~~~g~~~~a~~~~~~~~~~~---~~---~~~~~a~~~~~~a~~~~~~~~~~~~al~~~~ 358 (365)
++..|...+..+...|+...+...+..++... |. ..|..-..+-...+.+......+.++.++++
T Consensus 202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999888777766655532 22 2455444443444444444445555555444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4.8e-12 Score=91.91 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHH
Q 017806 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (365)
Q Consensus 205 ~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (365)
+++-++.+|.++.+ .|+|.+|+..|++|++.........++.+.++.++|.++.++|++ ++|+.+|
T Consensus 4 saddc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~----------~~A~~~y 69 (95)
T d1tjca_ 4 TAEDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLT 69 (95)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCCh----------HHHHHHH
Confidence 35668899999999 999999995555544444332222344578999999999999996 9999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 285 RAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 285 ~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+++|+++|+++.++.|++.+...++
T Consensus 70 ~~aL~l~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 70 KKLLELDPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998876654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.1e-11 Score=89.99 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHhcCCHHHH
Q 017806 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-------LHDAFYNWAIAISDRAKMRGRTKEA 229 (365)
Q Consensus 157 ~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~~~~~g~~~~A 229 (365)
.++..+.+|.+++..|+ |++|+.+|++|+++.|. ...++.+||.++.. .|++++|
T Consensus 4 saddc~~lG~~~~~~g~--------------y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A 65 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEAD--------------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKA 65 (95)
T ss_dssp CHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred cHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHH
Confidence 35667899999999999 99999999999998654 37899999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 017806 230 EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (365)
Q Consensus 230 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 265 (365)
+ ..|+++++++|+++.+++|++.+...++
T Consensus 66 ~-------~~y~~aL~l~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 66 L-------LLTKKLLELDPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp H-------HHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9 8899999999999999999998776654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=6.4e-11 Score=105.15 Aligned_cols=146 Identities=12% Similarity=-0.054 Sum_probs=117.0
Q ss_pred CCchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh---------------hhhhhhhHHHHHHHHHHHHHhCCCC---
Q 017806 96 DSVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE---------------GRSRQRILTFAAKRYANAIERNPED--- 157 (365)
Q Consensus 96 ~~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~A~~~~~~al~~~p~~--- 157 (365)
+.+++....+|.+++ ..|++++|+.+|++++...|. .+...|++++|+..|++++++.+..
T Consensus 9 ~~~ae~~~lrA~~~~-~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 87 (366)
T d1hz4a_ 9 TMHAEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 87 (366)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence 345677788899995 999999999999999998765 3456699999999999999875432
Q ss_pred ---HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHhcCCH
Q 017806 158 ---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--------LHDAFYNWAIAISDRAKMRGRT 226 (365)
Q Consensus 158 ---~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~g~~ 226 (365)
..++.+++.++...|+ +..++..+.+++.+.+. ...++..+|.++.. .|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~ 149 (366)
T d1hz4a_ 88 HYALWSLIQQSEILFAQGF--------------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARL 149 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH----hcch
Confidence 4567899999999999 99999999999876321 34578889999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCc
Q 017806 227 KEAEELWKQATKNYEKAVQLNWN-----SPQALNNWGLALQELSAI 267 (365)
Q Consensus 227 ~~A~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~ 267 (365)
+.+... +.+++...+. ...++..++.++...+++
T Consensus 150 ~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (366)
T d1hz4a_ 150 DEAEAS-------ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL 188 (366)
T ss_dssp HHHHHH-------HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred hhhHHH-------HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhH
Confidence 999954 5555544332 456778888888888886
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.23 E-value=2.4e-11 Score=96.67 Aligned_cols=112 Identities=19% Similarity=0.072 Sum_probs=80.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhC
Q 017806 135 SRQRILTFAAKRYANAIERNPED------------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~ 202 (365)
+..|+|++|+..|+++|+++|.. ..+|.++|.+|..+|+ |++|+..|++++.+.
T Consensus 20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~--------------~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------------FDEALHSADKALHYF 85 (156)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc--------------cchhhHhhhhhhhcc
Confidence 45577778888888888776653 4679999999999999 999999999999875
Q ss_pred CC-----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 203 PT-----------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 203 p~-----------~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
|. ...+++++|.+|.. +|++++|+..|++|+..+.+.-...+........++..+.++
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~----lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~l 154 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL 154 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHc
Confidence 42 24578999999999 999999996655555554433222222334444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.13 E-value=3.6e-11 Score=103.99 Aligned_cols=132 Identities=12% Similarity=-0.030 Sum_probs=112.6
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017806 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (365)
Q Consensus 135 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 214 (365)
+.+|++++|+..|+++++.+|++..++..+|.++...|+ +++|+..|+++++++|++...+..++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~--------------~e~A~~~l~~a~~l~P~~~~~~~~l~~ 72 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------------FERADEQLMQSIKLFPEYLPGASQLRH 72 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 456999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCC
Q 017806 215 AISDRAKMRGRTKEAEELWKQATKNYEKA-VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 215 ~~~~~~~~~g~~~~A~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (365)
++.. .+...++. ..+.+. +..+|.....+...+.++...|+. ++|+..++++++..|.
T Consensus 73 ll~a----~~~~~~a~-------~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~----------~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 73 LVKA----AQARKDFA-------QGAATAKVLGENEELTKSLVSFNLSMVSQDY----------EQVSELALQIEELRQE 131 (264)
T ss_dssp HHHH----HHHHHHHT-------TSCCCEECCCSCHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCC
T ss_pred HHHh----ccccHHHH-------HHhhhhhcccCchHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCCC
Confidence 9877 66666655 333332 223466677788889999999996 9999999999999999
Q ss_pred CHHHHHHH
Q 017806 294 FHRAIYNL 301 (365)
Q Consensus 294 ~~~~~~~l 301 (365)
.+..+.+.
T Consensus 132 ~~~~~~~~ 139 (264)
T d1zbpa1 132 KGFLANDT 139 (264)
T ss_dssp CCEEETTE
T ss_pred CCcccccc
Confidence 87665543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.13 E-value=2.3e-10 Score=92.94 Aligned_cols=132 Identities=10% Similarity=-0.080 Sum_probs=109.0
Q ss_pred CchHHHHhcCCChhHhhhcHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccc
Q 017806 97 SVTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS 176 (365)
Q Consensus 97 ~~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 176 (365)
...++++..|..+ ...|++++|++.|.+++.+.+...... +............+.+....++.+++.++..+|+
T Consensus 9 ~~f~~~~~~g~~~-~~~g~~e~A~~~~~~AL~l~rG~~l~~--~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~--- 82 (179)
T d2ff4a2 9 GRFVAEKTAGVHA-AAAGRFEQASRHLSAALREWRGPVLDD--LRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR--- 82 (179)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCSSTTGG--GTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCccccccc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
Confidence 3456788888888 499999999999999999986532211 1111222334445556678899999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 017806 177 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (365)
Q Consensus 177 a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~ 249 (365)
+++|+.++++++.++|.+..+|..++.++.. .|++.+|+..|+++...+.+-+.++|.
T Consensus 83 -----------~~~Al~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 83 -----------ASAVIAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp -----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred -----------chHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999 999999999999998888888888886
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.08 E-value=6.8e-09 Score=89.18 Aligned_cols=208 Identities=16% Similarity=0.132 Sum_probs=121.4
Q ss_pred chHHHHhcCCChhHhhhcHHHHHHHHHHhhccChh-h-------hh----hhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017806 98 VTDASFSQGNTPHQLAEQNNAAMELINSVTGVDEE-G-------RS----RQRILTFAAKRYANAIERNPEDYDALYNWA 165 (365)
Q Consensus 98 ~~~a~~~~g~~~~~~~g~~~~A~~~~~~al~~~~~-~-------~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 165 (365)
+|++++.+|..+. ..+++.+|+.+|+++...... + +. ...++..|..+++.+... .++.+...+|
T Consensus 1 ~p~~~~~lG~~~~-~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSY-KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence 4567777777773 777777777777777665422 1 11 134667777777776653 4566667777
Q ss_pred HHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-----------
Q 017806 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK----------- 234 (365)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~----------- 234 (365)
.++........ ..+.|+..|+++....+ ..+...+|..+............++..+.
T Consensus 78 ~~~~~~~~~~~----------~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 145 (265)
T d1ouva_ 78 NLYYSGQGVSQ----------NTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGC 145 (265)
T ss_dssp HHHHHTSSSCC----------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccccccch----------hhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchh
Confidence 76654322111 15666666666655432 23333333333320000122222222211
Q ss_pred ------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCCCCHH
Q 017806 235 ------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (365)
Q Consensus 235 ------------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (365)
.+..+++.+.+ +.++.+++++|.+|...... ..++++|+.+|+++.+. +++.
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~------~~d~~~A~~~~~~aa~~--g~~~ 215 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGA------TKNFKEALARYSKACEL--ENGG 215 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSS------CCCHHHHHHHHHHHHHT--TCHH
T ss_pred hhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCccc------ccchhhhhhhHhhhhcc--cCHH
Confidence 12355666654 56899999999998872210 12359999999999887 5789
Q ss_pred HHHHHHHHHHHhhhhhhhhcCcCCCCCCCcchHHHHHHHHHHHHHhcCc
Q 017806 297 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (365)
Q Consensus 297 ~~~~lg~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 345 (365)
++++||.+|. .|.-. .. .+..+..+|.+|.....
T Consensus 216 a~~~LG~~y~-~G~g~----------~~----n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 216 GCFNLGAMQY-NGEGV----------TR----NEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHH-TTSSS----------SC----CSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-cCCCC----------cc----CHHHHHHHHHHHHHCcC
Confidence 9999999987 34211 11 12448888888877643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=8.9e-09 Score=83.31 Aligned_cols=96 Identities=15% Similarity=-0.022 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----------------------HDAFYNWAIA 215 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~ 215 (365)
...+...|......|+ +++|+..|.+|+.+.+.. ..++.+++.+
T Consensus 11 f~~~~~~g~~~~~~g~--------------~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~ 76 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGR--------------FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 76 (179)
T ss_dssp HHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999 999999999999997653 2568889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHH
Q 017806 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (365)
Q Consensus 216 ~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 288 (365)
+.. .|++++|+ .++++++.++|.+..+|.+++.+|...|+. .+|++.|+++.
T Consensus 77 ~~~----~g~~~~Al-------~~~~~al~~~P~~e~~~~~l~~al~~~Gr~----------~eAl~~y~~~~ 128 (179)
T d2ff4a2 77 EIA----CGRASAVI-------AELEALTFEHPYREPLWTQLITAYYLSDRQ----------SDALGAYRRVK 128 (179)
T ss_dssp HHH----TTCHHHHH-------HHHHHHHHHSTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHH
T ss_pred HHH----CCCchHHH-------HHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHH
Confidence 999 99999999 889999999999999999999999999997 99999999883
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.75 E-value=8.2e-09 Score=88.84 Aligned_cols=107 Identities=9% Similarity=-0.043 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
.|++++|+..|+++++.+|+++.++.+||.++.. .|++++|+ +.|+++++++|++..++..++.++...
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~----~G~~e~A~-------~~l~~a~~l~P~~~~~~~~l~~ll~a~ 77 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERAD-------EQLMQSIKLFPEYLPGASQLRHLVKAA 77 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHH-------HHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 3449999999999999999999999999999999 99999999 778888999999999999998888777
Q ss_pred cCcchhHHhhhHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhhhh
Q 017806 265 SAIVPAREKQTIVRTAISKFRAAIQ-LQFDFHRAIYNLGTVLYGLAEDT 312 (365)
Q Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~ 312 (365)
+.. +++...+.+... .+|.....+...+.++...|+..
T Consensus 78 ~~~----------~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~ 116 (264)
T d1zbpa1 78 QAR----------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE 116 (264)
T ss_dssp HHH----------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred ccc----------HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHH
Confidence 764 555554444332 24555666777777777777554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.59 E-value=8.4e-07 Score=75.62 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=111.0
Q ss_pred hhhccCCCchHHHHhcCCChhHh----hhcHHHHHHHHHHhhccChh-hh-----------hhhhhHHHHHHHHHHHHHh
Q 017806 90 LKSEGEDSVTDASFSQGNTPHQL----AEQNNAAMELINSVTGVDEE-GR-----------SRQRILTFAAKRYANAIER 153 (365)
Q Consensus 90 l~~~~~~~~~~a~~~~g~~~~~~----~g~~~~A~~~~~~al~~~~~-~~-----------~~~~~~~~A~~~~~~al~~ 153 (365)
++...+.++..+++.+|.++. . ..++..|..+++.+...... .. ....+.+.|...|+++...
T Consensus 25 ~~kAa~~g~~~A~~~Lg~~y~-~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~ 103 (265)
T d1ouva_ 25 FEKACDLKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 103 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHH-cCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhh
Confidence 333344566777777777773 4 45677777777777665422 10 0124555666666655543
Q ss_pred C----------------------------------CCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHH
Q 017806 154 N----------------------------------PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 199 (365)
Q Consensus 154 ~----------------------------------p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al 199 (365)
+ +.+..+++.||.++....... .....+..+++.+.
T Consensus 104 g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~----------~~~~~~~~~~~~a~ 173 (265)
T d1ouva_ 104 KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP----------KDLKKALASYDKAC 173 (265)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC----------CCHHHHHHHHHHHH
T ss_pred hhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcc----------cccccchhhhhccc
Confidence 2 344556666666665532211 12677777777776
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCcchhHHhhh
Q 017806 200 RLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE----LSAIVPAREKQT 275 (365)
Q Consensus 200 ~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~ 275 (365)
+ +.++.++++||.++...--...++++|+ .+|+++.+. +++.++++||.+|.. ..+.
T Consensus 174 ~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~-------~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~-------- 234 (265)
T d1ouva_ 174 D--LKDSPGCFNAGNMYHHGEGATKNFKEAL-------ARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNE-------- 234 (265)
T ss_dssp H--TTCHHHHHHHHHHHHHTCSSCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCS--------
T ss_pred c--ccccccccchhhhcccCcccccchhhhh-------hhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCH--------
Confidence 5 4588899999988865100023566666 888888876 579999999999986 2344
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 017806 276 IVRTAISKFRAAIQLQFD 293 (365)
Q Consensus 276 ~~~~A~~~~~~al~~~p~ 293 (365)
++|+.+|++|......
T Consensus 235 --~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 235 --KQAIENFKKGCKLGAK 250 (265)
T ss_dssp --TTHHHHHHHHHHHTCH
T ss_pred --HHHHHHHHHHHHCcCH
Confidence 9999999999988654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=2.5e-06 Score=63.01 Aligned_cols=103 Identities=9% Similarity=-0.052 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcC
Q 017806 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSA 266 (365)
Q Consensus 188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~ 266 (365)
+..-..-|.+-..-.+ .....|+.|.++.+ ..... ..+++|..++.+++.+|.+ .++++++|..|.++|+
T Consensus 18 l~~~~~q~~~e~~~~~-s~qt~F~YAw~Lv~----S~~~~----d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd 88 (124)
T d2pqrb1 18 LEILRQQVVSEGGPTA-TIQSRFNYAWGLIK----STDVN----DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE 88 (124)
T ss_dssp HHHHHHHHHHTTGGGS-CHHHHHHHHHHHHH----SSCHH----HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCC-CcchHHHHHHHHHc----CCcHH----HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh
Confidence 3333444444332233 47899999999987 65443 2345558899999999876 5899999999999999
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 017806 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (365)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 309 (365)
+ ++|..+++++|+++|+|..+....-.+..++.
T Consensus 89 y----------~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~ 121 (124)
T d2pqrb1 89 Y----------SMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ 121 (124)
T ss_dssp H----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Confidence 5 99999999999999999999887777665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=1.8e-06 Score=63.86 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017806 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (365)
Q Consensus 158 ~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A 236 (365)
..+.|+.|+++.+... .+..+++|..+++++..+|.+. +++++||..+++ +|+|+.|.
T Consensus 35 ~qt~F~YAw~Lv~S~~-----------~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~------ 93 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTD-----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAK------ 93 (124)
T ss_dssp HHHHHHHHHHHHHSSC-----------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHH------
T ss_pred cchHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHH------
Confidence 6789999999987643 2338899999999999999764 899999999999 99999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 017806 237 TKNYEKAVQLNWNSPQALNNWGLALQEL 264 (365)
Q Consensus 237 ~~~~~~al~~~p~~~~~~~~lg~~~~~~ 264 (365)
++++++++++|++..+....-.+-.++
T Consensus 94 -~~~~~~L~ieP~n~qA~~L~~~Ie~~~ 120 (124)
T d2pqrb1 94 -RYVDTLFEHERNNKQVGALKSMVEDKI 120 (124)
T ss_dssp -HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 889999999999999987766665544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.32 E-value=4.9e-06 Score=63.10 Aligned_cols=121 Identities=16% Similarity=0.116 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017806 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (365)
Q Consensus 137 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (365)
..|+++|+.+|+++.+.+ ++.+.++||.. ...+ +++|+.+|+++.+. .++.+.+.||.+|
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~~--------------~~~a~~~~~~aa~~--g~~~a~~~Lg~~y 65 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGCLSLVSN--SQIN--------------KQKLFQYLSKACEL--NSGNGCRFLGDFY 65 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTSC--------------HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhhhhhccc--cccC--------------HHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence 467889999999998874 56667777642 2234 89999999999875 5889999999988
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchhHHhhhHHHHHHHHHHHHHHhCC
Q 017806 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (365)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 292 (365)
..-.-...++.+|+ .+|+++.+. .++.+.++||.+|..-.-. ..++.+|+.+|++|.+...
T Consensus 66 ~~g~~~~~d~~~A~-------~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv------~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 66 ENGKYVKKDLRKAA-------QYYSKACGL--NDQDGCLILGYKQYAGKGV------VKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHCSSSCCCHHHHH-------HHHHHHHHT--TCHHHHHHHHHHHHHTSSS------CCCHHHHHHHHHHHHHTTC
T ss_pred hhccccchhhHHHH-------HHHhhhhcc--CcchHHHHHHHHHHcCCcc------CCCHHHHHHHHHHHHHCCC
Confidence 64000012455666 888888765 5789999999999872110 1124999999999988754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=2.5e-05 Score=58.95 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=84.6
Q ss_pred hhcHHHHHHHHHHhhccChh-h-----hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCchhhh
Q 017806 113 AEQNNAAMELINSVTGVDEE-G-----RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA 186 (365)
Q Consensus 113 ~g~~~~A~~~~~~al~~~~~-~-----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~~~~ 186 (365)
..++++|+.+|+++...... + .....++++|+.+|+++.+. +++.+.+.||.+|.. |..+ ..
T Consensus 6 ~kd~~~A~~~~~kaa~~g~~~a~~~l~~~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~-g~~~---------~~ 73 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYEN-GKYV---------KK 73 (133)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-CSSS---------CC
T ss_pred ccCHHHHHHHHHHHHHCCChhhhhhhccccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhh-cccc---------ch
Confidence 35789999999999877532 2 23347899999999999875 689999999999976 2200 01
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~ 247 (365)
++++|+.+|+++.+. .++.+.++||.+|..-.-...++.+|+ .+|++|.+..
T Consensus 74 d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~-------~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV-------KTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH-------HHHHHHHHTT
T ss_pred hhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHH-------HHHHHHHHCC
Confidence 289999999999875 578999999999865000023667777 7788887764
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.31 E-value=0.094 Score=34.22 Aligned_cols=44 Identities=25% Similarity=0.154 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017806 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (365)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~l 257 (365)
+...+.-+.. .|+|++||+++++|..++..|+++ +.+..+...|
T Consensus 11 ~~RrAer~l~----~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~SL 54 (83)
T d2crba1 11 QSRRADRLLA----AGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSL 54 (83)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3445556666 999999999999999999999997 6677776543
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.56 E-value=0.17 Score=34.38 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
.....|+..+.+|++.+ . .|+|++|+.+|..|+..|..++...++..
T Consensus 10 ~~~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~e~~~~ 56 (93)
T d1wfda_ 10 SDSTAAVAVLKRAVELD---------------A----ESRYQQALVCYQEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp CHHHHHHHHHHHHHHHH---------------H----TTCHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred hHHHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 34778888888887654 4 99999999999999999999999877643
|
| >d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.15 Score=33.35 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 017806 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (365)
Q Consensus 187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~ 251 (365)
.++.|+....+|++.+ . .|+|.+|+.+|..|+..|..+++.++++.
T Consensus 7 ~l~~A~~l~~~Av~~D---------------~----~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~ 52 (77)
T d1wr0a1 7 NLQKAIDLASKAAQED---------------K----AGNYEEALQLYQHAVQYFLHVVKYEAQGD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHH---------------H----TTCCSSHHHHHHHHHHHHHHHHHHSCCTG
T ss_pred HHHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 3677888888777654 4 89999999999999999999999877654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.08 E-value=11 Score=31.47 Aligned_cols=126 Identities=13% Similarity=0.045 Sum_probs=73.4
Q ss_pred CCChhHhhhcHHHHHHHHHHhhccCh--hhhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCccccCCCCch
Q 017806 106 GNTPHQLAEQNNAAMELINSVTGVDE--EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS 183 (365)
Q Consensus 106 g~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~ 183 (365)
|..+ ...|.++.|..+|...-.... .++...++++.|.+...++ ++...|......+.....
T Consensus 21 ~~~c-~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e---------- 84 (336)
T d1b89a_ 21 GDRC-YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE---------- 84 (336)
T ss_dssp ---------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC----------
T ss_pred HHHH-HHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcH----------
Confidence 4555 377777777777774333221 1345567788888877665 567788888888777665
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017806 184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (365)
Q Consensus 184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~g~~~~A~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 263 (365)
..-+..+ ...+ -.+++-...+-..+.. .|.+++.+ ..++.++..++.+...++.++.+|.+
T Consensus 85 ----~~la~i~-~~~~---~~~~d~l~~~v~~ye~----~~~~e~Li-------~~Le~~~~~~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 85 ----FRLAQMC-GLHI---VVHADELEELINYYQD----RGYFEELI-------TMLEAALGLERAHMGMFTELAILYSK 145 (336)
T ss_dssp ----HHHHHHT-TTTT---TTCHHHHHHHHHHHHH----TTCHHHHH-------HHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred ----HHHHHHH-HHHh---hcCHHHHHHHHHHHHH----cCChHHHH-------HHHHHHHcCCccchHHHHHHHHHHHH
Confidence 3332111 1111 1234444445555666 77777777 55777777777777888888887776
Q ss_pred hcC
Q 017806 264 LSA 266 (365)
Q Consensus 264 ~~~ 266 (365)
.+.
T Consensus 146 ~~~ 148 (336)
T d1b89a_ 146 FKP 148 (336)
T ss_dssp TCH
T ss_pred hCh
Confidence 554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.49 E-value=3.9 Score=34.43 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 017806 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (365)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 311 (365)
|.+++.+.+++.++...+.+...+..++.+|.+.+..
T Consensus 113 ~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~ 149 (336)
T d1b89a_ 113 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 149 (336)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChH
Confidence 3459999999999998899999999999998876643
|