Citrus Sinensis ID: 017817

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MLLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIGN
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccEEEEEcccEEEcccccccEEEEccccccccccccccccccccEEcccccccccccccccccEEccccccccccccccccccEEEEEcccccEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHcccEEEcccccEEEEEEEEccccccccccccccccEEEEEEEcccEEEEEEEEcccccccccEEccEEEEcccccHHHHHHHHHHHccccEEEEEEEEEEEEccccccccEEEEEEEEEccccccccccHHHHcccEEEccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccEEEEEEccccccccccccEEEEccccccccccccEEccccEEcEEEEccccccccccccccEEEccccccccccccccccEEcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHcccEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEcccEEEEEEEccccccccccEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccHHHHHHcccccHHHHHHcccHcccHHHHHHHHHHHHHcccccccccccEcccccccccEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MLLSLMELKllgsksvsassifqnggttsssfrhgvsirfspqlcscrgvfprvsensylckigigssdqknivkddYVYRInevngagssifsrnlrvldffddeydgvvvdpkrlpsdpdaFASILRFSLIHWRRMNKKGiwlklplenaelvpIAVKegfkyhhaepeyLMLTywipdgpcvlpgnathqvgvggfvindnneVLVVQEKycnpafaglwklptgfidesEEIFKGAVREVkeetgvdtEFVEVIAFRHAhnvafqksDLFFICMlkplsteikvddleikgakwmpfmefvkqpliqgdcMFKKVIDICIARLRKRycglyphqlvsafdgqtsslyyndsdtqdtncign
Flexible Loop (DISEMBL)
MLLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCkigigssdqkniVKDDYVYRINEVngagssifsrnLRVLDFFDDEYDGVVVdpkrlpsdpdaFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSlyyndsdtqdtncign
Low Complexity Region (SEG)
mllslmelkllgsksVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIGN
Disordered region (IsUnstruct)
*******************************FRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYY*************
Disordered Region (DISOPRED)
********KLLGSKSVSASSIFQNGG************RFSPQLCSCRGVF***************************V*****************LRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDT********
Disordered Region (DISEMBL)
MLLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIGN
Disordered Region (DISPRO)
*LLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSD*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLSLMELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q8L7W2	369	Nudix hydrolase 8 OS=Arab	yes	no	0.953	0.943	0.590	1e-117
Q94B74	278	Nudix hydrolase 2 OS=Arab	no	no	0.712	0.935	0.505	2e-70
Q6NPD7	277	Nudix hydrolase 10 OS=Ara	no	no	0.715	0.942	0.476	2e-68
Q9SU14	282	Nudix hydrolase 7 OS=Arab	no	no	0.701	0.907	0.469	3e-60
Q9SJC6	302	Nudix hydrolase 5 OS=Arab	no	no	0.652	0.788	0.479	6e-60
Q9SJC4	283	Nudix hydrolase 6 OS=Arab	no	no	0.679	0.876	0.466	8e-56
P53370	316	Nucleoside diphosphate-li	yes	no	0.624	0.721	0.344	3e-32
P70563	313	Nucleoside diphosphate-li	yes	no	0.624	0.728	0.344	6e-32
P13420	217	Nucleoside diphosphate-li	N/A	no	0.539	0.907	0.388	9e-32
Q8CH40	313	Nucleoside diphosphate-li	yes	no	0.624	0.728	0.336	2e-30

>sp|Q8L7W2|NUDT8_ARATH Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/361 (59%), Positives = 257/361 (71%), Gaps = 13/361 (3%)

Query: 15  SVSASSIFQNGGTTSSSFRHGV-----SIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSD 69
           SVS S +    GTT   F H        ++ SP+    +   P+   +S   K       
Sbjct: 3   SVSLSEVTVIKGTTHLGFMHSFRQPFCGVKISPKFYLSKVDGPKAISSSSNTKSQFVYGG 62

Query: 70  QKNIVKDDYVYRINEVNGAGSSIFSRNLR---VLDFFDDEYDGVVVDPKRLPSDPDAFAS 126
                  D  Y++N VN    ++ S  ++   +LD +DDEY GV+VD  +LPS+P AFAS
Sbjct: 63  GSIAATSDSGYKMNGVNLKSRTLMSSAVKERSLLDAYDDEYGGVIVDHGKLPSNPYAFAS 122

Query: 127 ILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCV 185
           +LR SL  WRR  KKG+WLKLP+E +ELVPIA+KEGF+YHHAE  Y+MLTYWIP+  P +
Sbjct: 123 MLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSM 182

Query: 186 LPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVK 245
           LP NA+HQVGVGGFV+N + EVLVVQEKYC P+  GLWKLPTGFI+ESEEIF GAVREVK
Sbjct: 183 LPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVK 242

Query: 246 EETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV 305
           EETGVDTEF EVIAFRHAHNVAF+KSDLFFICML+PLS +I +D LEIK AKWMP  EFV
Sbjct: 243 EETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFV 302

Query: 306 KQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYN----DSDTQDTN 361
           +QP+I+GD MFK+VI+IC ARL  RYCGL PH+LVS FDG+ SSLYYN    D D   +N
Sbjct: 303 EQPMIRGDKMFKRVIEICEARLSHRYCGLSPHRLVSTFDGKPSSLYYNVVDDDHDPSHSN 362

Query: 362 C 362
           C
Sbjct: 363 C 363

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q94B74|NUDT2_ARATH Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1

 Score =  266 bits (679), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/263 (50%), Positives = 170/263 (64%), Gaps = 3/263 (1%)

Query: 99  VLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIA 158
           +L    D+Y GV+ +    P DP  F+++LR SL  W    KKG+W+KLP +   L   A
Sbjct: 19  LLPSVQDKYGGVMTEMTH-PMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETA 77

Query: 159 VKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPA 218
           VKEGF +HHAE +YLML YWIP     LP NA+H+VG+G FVIN N EVLVVQEK     
Sbjct: 78  VKEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQ 137

Query: 219 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 278
             G+WK PTG ++E E+I  G+VREVKEETGVDTEF +++AFR  H   F KSDLFF+CM
Sbjct: 138 GQGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCM 197

Query: 279 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQ 338
           LKPLS EI   + EI+ A+WMP+ E++ QP +Q   + + + DIC A+    Y G  P +
Sbjct: 198 LKPLSLEINAQESEIEAAQWMPWEEYINQPFVQNYELLRYMTDICSAKTNGDYEGFTPLR 257

Query: 339 LVSAFDGQTSSLYYNDSDTQDTN 361
            VSA D Q  +LYYN  D    N
Sbjct: 258 -VSAPD-QQGNLYYNTRDLHSRN 278

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q6NPD7|NUD10_ARATH Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1

 Score =  259 bits (663), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/271 (47%), Positives = 169/271 (62%), Gaps = 10/271 (3%)

Query: 86  NGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWL 145
           NG    IF     VL F DD+Y GV+V+ K  P D   F + LR S   WR   KKG+WL
Sbjct: 10  NGVEHKIF----EVLPFVDDDYGGVIVEMKT-PMDTKNFVAALRDSFEQWRLQGKKGVWL 64

Query: 146 KLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN 205
            LPL +  LV  AVKEGF+YHHAEP YLML YWIP+    +P NA+H+V VG  V+N N 
Sbjct: 65  NLPLSHVNLVEPAVKEGFRYHHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNK 124

Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN 265
           E     EKY +   +G+WK+PTG +DE EEIF  A+REVKEETG+DTEF+E++AF   H 
Sbjct: 125 E-----EKYGSLCGSGIWKIPTGVVDEGEEIFAAAIREVKEETGIDTEFLEILAFCQTHE 179

Query: 266 VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 325
             F KSDLFF+C+L+P S +I+  DLEI+ A+WM F +   QP+   + +FK +  IC  
Sbjct: 180 SFFAKSDLFFVCLLRPTSFDIQKQDLEIEAAQWMRFEDSASQPITHKNDLFKDIHHICSM 239

Query: 326 RLRKRYCGLYPHQLVSAFDGQTSSLYYNDSD 356
           ++ K Y G     + + FD +   LY N  +
Sbjct: 240 KMEKSYSGFSKKPITTFFDDKLGYLYLNKQE 270

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SU14|NUDT7_ARATH Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1

 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/264 (46%), Positives = 162/264 (61%), Gaps = 8/264 (3%)

Query: 94  SRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAE 153
           ++ + +L+   D YDGV V     P D + F   LR SL HWR   KKGIW+KLPL  A 
Sbjct: 5   AQQIPLLEGETDNYDGVTVTMVE-PMDSEVFTESLRASLSHWREEGKKGIWIKLPLGLAN 63

Query: 154 LVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQE 212
           LV  AV EGF+YHHAEPEYLML  WI + P  +P NA+H VG G  VIN N  EVLVVQE
Sbjct: 64  LVEAAVSEGFRYHHAEPEYLMLVSWISETPDTIPANASHVVGAGALVINKNTKEVLVVQE 123

Query: 213 KYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF-QKS 271
           +        +WKLPTG I+E E+I+ G  REV+EETG+  +FVEV+AFR +H     +K+
Sbjct: 124 RSGFFKDKNVWKLPTGVINEGEDIWTGVAREVEEETGIIADFVEVLAFRQSHKAILKKKT 183

Query: 272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY 331
           D+FF+C+L P S +I     EI  AKWMP  E+V QP  + + MFK + +IC  +  + Y
Sbjct: 184 DMFFLCVLSPRSYDITEQKSEILQAKWMPIQEYVDQPWNKKNEMFKFMANICQKKCEEEY 243

Query: 332 CG--LYPHQLVSAFDGQTSSLYYN 353
            G  + P    +   G+ S +Y N
Sbjct: 244 LGFAIVP---TTTSSGKESFIYCN 264

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use both NADH and ADP-ribose as substrates, but not 8-oxo-dGTP, cyclic ADP-ribose, GDP-manose, UDP-glucose, ATP, or GTP. Exerts negative control of EDS1 signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC6|NUDT5_ARATH Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=3

 Score =  231 bits (590), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 116/242 (47%), Positives = 159/242 (65%), Gaps = 4/242 (1%)

Query: 97  LRVLDFFDDEYDGVVVDPKRLPS-DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELV 155
           + +LD  +D + G VV+   + S     F S L  SL  W+   KKGIW+KLP E + LV
Sbjct: 27  ISLLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLV 86

Query: 156 PIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYC 215
             A+K+GF YHHAE EY+MLT+W+P+ P  LP NA+H++G+G FV+N N E+LVVQE   
Sbjct: 87  DTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSG 146

Query: 216 NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ-KSDLF 274
                 +WK+PTG I E E I+ GAVREVKEET +D EFVEV++F  +H   +Q K+D+F
Sbjct: 147 YFKDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESHQAVWQRKTDIF 206

Query: 275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL--IQGDCMFKKVIDICIARLRKRYC 332
           F+C L+  + EI+  D EI  AKWMP  E+V QP    +G+ MFK + +IC+ R R++Y 
Sbjct: 207 FVCELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIANICLKRSREKYT 266

Query: 333 GL 334
           G 
Sbjct: 267 GF 268

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SJC4|NUDT6_ARATH Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1

 Score =  218 bits (554), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 117/251 (46%), Positives = 154/251 (61%), Gaps = 3/251 (1%)

Query: 105 DEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFK 164
           D Y GV V+    P   + F   LR SL++W     KGIWLKL      L+  A  EGF 
Sbjct: 16  DNYGGVKVNLTE-PMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAKAEGFV 74

Query: 165 YHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNEVLVVQEKYCNPAFAGLW 223
            HHAE EY MLT WI D P  LP NA+H++GVG FV+N    EVLVVQE   +    G+W
Sbjct: 75  CHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTGVW 134

Query: 224 KLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ-KSDLFFICMLKPL 282
           KLPTG + E E I++GA+REV+EETG+ T+FVEV+AFR +H    + K+D+FF+C L+P 
Sbjct: 135 KLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLCELEPT 194

Query: 283 STEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSA 342
           + EIK  D EI  AKWMP  E+V QP  Q   +F+ + +IC+ RL++     +   L + 
Sbjct: 195 TFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMGFSKVLTTT 254

Query: 343 FDGQTSSLYYN 353
             G+ S LY N
Sbjct: 255 SSGKESYLYCN 265

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 22/250 (8%)

Query: 105 DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 160
           D + G+ V   RL +    D  AF   L+ ++  WR   +  +WL +P+  +  +  A  
Sbjct: 51  DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 110

Query: 161 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQEKYCNPAF 219
            GF +HHAE +   LT W+ +GP  LPG A+HQVGV G V +++  ++LVVQ++      
Sbjct: 111 LGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRN---KL 167

Query: 220 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAFQKSDLFFIC 277
             +WK P G  +  E+I   AVREV EETG+ +EF  V++ R  H    AF KSD++ IC
Sbjct: 168 KNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIIC 227

Query: 278 MLKPLSTEIKVDDLEIKGAKWM------------PFMEFVKQPLIQGDCMFKKVIDICIA 325
            LKP S  I     E    +WM            P    V + L+ G       ID+ + 
Sbjct: 228 RLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDLTVE 287

Query: 326 RLRKRYCGLY 335
            L   Y GL+
Sbjct: 288 ELPAVYTGLF 297

May contribute to the regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|P70563|NUDT6_RAT Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=1 SV=1

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 121/250 (48%), Gaps = 22/250 (8%)

Query: 105 DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 160
           D + G+ V   R  +    D  AF  +L+ ++  WR   +   WL +P+  +  +  A  
Sbjct: 48  DRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFIAPAAS 107

Query: 161 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNEVLVVQEKYCNPAF 219
            GF +HHAEP    LT W+ +GP  LPG ATHQVGV G V +    +VLVVQ++      
Sbjct: 108 LGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDR---NKL 164

Query: 220 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSDLFFIC 277
             +WK P G  +  E+I   AVREV EETGV +EF  +++ R  H    AF  SD++ IC
Sbjct: 165 KNMWKFPGGLSEPGEDIGDTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLIC 224

Query: 278 MLKPLSTEIKVDDLEIKGAKWM------------PFMEFVKQPLIQGDCMFKKVIDICIA 325
            L+P S  I     E    +WM            P    V + L+ G       ID+ + 
Sbjct: 225 RLQPRSFTINFCQQECLKCEWMDLESLARTKHTTPITSRVARLLLYGHREGFDKIDLSME 284

Query: 326 RLRKRYCGLY 335
            L   Y GL+
Sbjct: 285 ELPAVYTGLF 294

May contribute to the regulation of cell proliferation.

Rattus norvegicus (taxid: 10116)

>sp|P13420|NUDT6_XENLA Nucleoside diphosphate-linked moiety X motif 6 OS=Xenopus laevis GN=nudt6 PE=1 SV=1

 Score =  137 bits (346), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 113/219 (51%), Gaps = 22/219 (10%)

Query: 151 NAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNEVLV 209
            + L+ IA  EGF +HHAE     LT W+ DGP  LPG ATHQVGV G V++ DN +VLV
Sbjct: 2   QSRLISIAASEGFTFHHAERNESTLTLWLKDGPSKLPGYATHQVGVAGAVLDEDNGKVLV 61

Query: 210 VQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--A 267
           VQ++         WK P G  D+ E+I   AVREV EETG+ +EF  +++ R  HN   A
Sbjct: 62  VQDR---NKTVNAWKFPGGLSDQGEDIGATAVREVLEETGIHSEFKSLLSIRQQHNHPGA 118

Query: 268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF------------VKQPLIQGDCM 315
           F KSDL+ IC LKPLS  I     E    +WM   E             V + L+ G   
Sbjct: 119 FGKSDLYIICRLKPLSYTINFCHQECLKCEWMDLQELAYCSNTTIITSRVAKLLLYGYNE 178

Query: 316 FKKVIDICIARLRKRYCG----LYPHQLVSAFDGQTSSL 350
              ++D+ +      Y G    LY  +L   ++G  + L
Sbjct: 179 GFHLVDLTMRTFPAVYSGLFYSLYHKELPETYEGSATLL 217

May contribute to the regulation of cell proliferation.

Xenopus laevis (taxid: 8355)

>sp|Q8CH40|NUDT6_MOUSE Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus GN=Nudt6 PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 121/250 (48%), Gaps = 22/250 (8%)

Query: 105 DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 160
           D + GV V   R  +    D  AF  +L+ ++  WR   +   WL +P+  +  +  A  
Sbjct: 48  DRFGGVSVHLSRHHTLHGLDAAAFRRLLQAAIQQWRSDGRIAAWLHIPILQSHFIAPAAS 107

Query: 161 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNEVLVVQEKYCNPAF 219
            GF +HHA+P    LT W+ +GP  LPG ATHQVGV G V +    +VLVVQ++      
Sbjct: 108 LGFCFHHAKPHSSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDR---NKL 164

Query: 220 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSDLFFIC 277
             +WK P G  +  E+I   AVREV EETGV +EF  +++ R  H    AF  SD++ +C
Sbjct: 165 KNMWKFPGGLSEPGEDIADTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLVC 224

Query: 278 MLKPLSTEIKVDDLEIKGAKWM------------PFMEFVKQPLIQGDCMFKKVIDICIA 325
            L+P S  I     E    +W+            P    V + L+ G       ID+ + 
Sbjct: 225 RLQPRSFTINFCQQECLKCEWIDLENLARTKHTTPITSRVARLLLYGLREGFDKIDLSME 284

Query: 326 RLRKRYCGLY 335
            L   Y GL+
Sbjct: 285 ELPAVYTGLF 294

May contribute to the regulation of cell proliferation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
255581321	368	mutt domain protein, putative [Ricinus c	0.983	0.975	0.674	1e-141
224138688	372	predicted protein [Populus trichocarpa]	0.989	0.970	0.658	1e-135
357476761	357	Nudix hydrolase [Medicago truncatula] gi	0.961	0.983	0.626	1e-133
359806679	367	uncharacterized protein LOC100815507 [Gl	0.983	0.978	0.653	1e-132
356540550	363	PREDICTED: nudix hydrolase 8-like [Glyci	0.972	0.977	0.630	1e-127
356513760	298	PREDICTED: nudix hydrolase 8-like [Glyci	0.802	0.983	0.714	1e-124
449458978	355	PREDICTED: nudix hydrolase 8-like [Cucum	0.904	0.929	0.635	1e-122
224074201	267	predicted protein [Populus trichocarpa]	0.731	1.0	0.752	1e-116
18422772	369	nudix hydrolase 8 [Arabidopsis thaliana]	0.953	0.943	0.590	1e-115
297794491	364	predicted protein [Arabidopsis lyrata su	0.898	0.901	0.622	1e-115

>gi|255581321|ref|XP_002531471.1| mutt domain protein, putative [Ricinus communis] gi|223528925|gb|EEF30921.1| mutt domain protein, putative [Ricinus communis]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/369 (67%), Positives = 290/369 (78%), Gaps = 10/369 (2%)

Query: 6   MELKLLGSKSVSASSIFQNGGTTSS---SFRHGVSIRFSPQ-LCSCRGVFPRVS-----E 56
           MELK L SKSVS+S I     T SS   S RH   +R SP+ + SCRGVF +VS      
Sbjct: 1   MELKFLDSKSVSSSEIALMATTRSSPCPSLRHVGGVRLSPEFIWSCRGVFLKVSCSSSSN 60

Query: 57  NSYLCKIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKR 116
            +YL K  I S+ Q+NIV ++Y+YR N  NGA S++FS N ++LD FDDEY GVVVD  R
Sbjct: 61  GTYLSKKHI-SAGQENIVAENYLYRTNGTNGANSTLFSGNAKILDAFDDEYGGVVVDSNR 119

Query: 117 LPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLT 176
           LP + D FAS L  SL HW+   KKGIWLKLPLE +ELVPIAVKEGF+YHHAEP Y+MLT
Sbjct: 120 LPKNSDDFASSLHLSLSHWKITGKKGIWLKLPLERSELVPIAVKEGFQYHHAEPGYVMLT 179

Query: 177 YWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEI 236
           YW+P+GPC+LP NATHQVGVGGFVIND NEVLVVQE +C P+F GLWK+PTGFI ESEEI
Sbjct: 180 YWLPEGPCMLPANATHQVGVGGFVINDKNEVLVVQETFCAPSFLGLWKIPTGFIHESEEI 239

Query: 237 FKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGA 296
           + GA+REVKEETG+DTEF+EV+AFRHAHN+AF KSDLFF+CMLKPLST+I VDDLEI+ A
Sbjct: 240 YTGAMREVKEETGIDTEFLEVVAFRHAHNLAFDKSDLFFVCMLKPLSTQIIVDDLEIQAA 299

Query: 297 KWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSD 356
           KWMP +EFVKQPLIQGD MFKK+IDICIARL KRYCGL  H+LVS FDG+ S LYYN  D
Sbjct: 300 KWMPLVEFVKQPLIQGDSMFKKIIDICIARLGKRYCGLSAHKLVSKFDGRLSCLYYNVVD 359

Query: 357 TQDTNCIGN 365
            ++ NC  N
Sbjct: 360 NENINCTVN 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138688|ref|XP_002326665.1| predicted protein [Populus trichocarpa] gi|222833987|gb|EEE72464.1| predicted protein [Populus trichocarpa]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/372 (65%), Positives = 286/372 (76%), Gaps = 11/372 (2%)

Query: 5   LMELKLLGSKSVS----ASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRG--VFPRVSENS 58
           + +LK    KS S    A+ + + G +  SS  H V +RFS +  SCRG  VF + S +S
Sbjct: 1   MTQLKFFDFKSASLSEKAALMGRAGSSPFSSLGHSVGVRFSQEFSSCRGSGVFTKASYSS 60

Query: 59  -----YLCKIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVD 113
                Y+ K  + S D++    ++Y Y+IN  + + SS+FSRN++ LD  DDEY GVVVD
Sbjct: 61  SSNGTYMSKRALSSVDKEKFAAENYFYQINGTSVSSSSLFSRNVKALDACDDEYGGVVVD 120

Query: 114 PKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYL 173
           P RLP +PDAFASILRFSL HW+   KKGIWLKLPLE +ELVP AVKEGF+YHHAE  Y+
Sbjct: 121 PDRLPVNPDAFASILRFSLSHWKMKGKKGIWLKLPLERSELVPFAVKEGFQYHHAERGYV 180

Query: 174 MLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDES 233
           MLTYWIP+GPC+LP NATHQVGVGGFVIND NEVLVVQEK+  P+FA LWK+PTGFI ES
Sbjct: 181 MLTYWIPEGPCMLPTNATHQVGVGGFVINDKNEVLVVQEKFYAPSFADLWKIPTGFILES 240

Query: 234 EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEI 293
           EEI+ GAVREVKEETGVDTEFVEVIAFRHAHN+AF KSDLFF+CMLKPLS +IKVDDLEI
Sbjct: 241 EEIYSGAVREVKEETGVDTEFVEVIAFRHAHNLAFDKSDLFFVCMLKPLSAQIKVDDLEI 300

Query: 294 KGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYN 353
           + AKWMP +EFV QPLIQ D MFKK+IDICIARL K YCGL PHQ+VS FDG+ S LYYN
Sbjct: 301 QAAKWMPLVEFVAQPLIQEDGMFKKIIDICIARLGKHYCGLLPHQVVSKFDGRPSCLYYN 360

Query: 354 DSDTQDTNCIGN 365
             D QD NC GN
Sbjct: 361 VIDDQDVNCKGN 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476761|ref|XP_003608666.1| Nudix hydrolase [Medicago truncatula] gi|355509721|gb|AES90863.1| Nudix hydrolase [Medicago truncatula] gi|388508944|gb|AFK42538.1| unknown [Medicago truncatula]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/364 (62%), Positives = 284/364 (78%), Gaps = 13/364 (3%)

Query: 6   MELKLLGSKSVSASSIFQNGGTTSSSFRHGVSIRFSPQLCSCRGVFPRV---SENSYLCK 62
           ME+K L S S+S   + +   T  +SFRH   +R+SP+    RG+F +    S+++YL  
Sbjct: 1   MEVKSLSSNSLSTFEVGKFSSTLFTSFRHKFGVRYSPKFKCRRGLFLKTCSASDDTYL-- 58

Query: 63  IGIGSSDQKNIVKDDYVYRINE--VNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSD 120
                +D+  I  DD+    +   +NG+ SS++ RNL +LD FDDEY G+++DP RLP +
Sbjct: 59  -----ADKAVIFSDDFASETSSHCINGSTSSLYYRNL-ILDAFDDEYGGILIDPNRLPHN 112

Query: 121 PDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIP 180
           P AFAS+L  SL HW+RM KKGIWLKLP+E ++LVP+AVKEGF+YHHAEP Y+MLTYWIP
Sbjct: 113 PYAFASMLCLSLSHWKRMGKKGIWLKLPIEQSDLVPVAVKEGFQYHHAEPGYVMLTYWIP 172

Query: 181 DGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGA 240
           +GPC+LP NA+HQVG+GGFVIN NNEVLVVQEK+C+PA  GLWK+PTGFI E+EEI+ GA
Sbjct: 173 EGPCMLPANASHQVGIGGFVINQNNEVLVVQEKHCSPATLGLWKIPTGFIHEAEEIYTGA 232

Query: 241 VREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 300
           VREVKEETG+DTEF+EVIAFRH HNVAF+KSDLFFICMLKPLS+ I VDDLEI  AKWMP
Sbjct: 233 VREVKEETGIDTEFIEVIAFRHVHNVAFEKSDLFFICMLKPLSSTITVDDLEIDAAKWMP 292

Query: 301 FMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDT 360
            +EFV+QPLIQ D MFKK++DI IARL KRYCGL  HQ+VS FDG+ +SLYYN  D  D+
Sbjct: 293 LVEFVEQPLIQEDSMFKKIVDIFIARLGKRYCGLSTHQVVSKFDGKITSLYYNVFDNDDS 352

Query: 361 NCIG 364
           NC+G
Sbjct: 353 NCVG 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806679|ref|NP_001241031.1| uncharacterized protein LOC100815507 [Glycine max] gi|255639984|gb|ACU20284.1| unknown [Glycine max]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/366 (65%), Positives = 281/366 (76%), Gaps = 7/366 (1%)

Query: 6   MELKLLGSKSVSASSIFQNGGTTS---SSFRHGVSIRFSPQLCSCRGVFPRV---SENSY 59
           MELK   S SVS S +   G + S   SSFRH V +RFS      RG+F      S+N+Y
Sbjct: 1   MELKSFSSCSVSTSEVAHVGRSYSTLISSFRHKVGVRFSTHFQCRRGLFLTTYCASDNTY 60

Query: 60  LC-KIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLP 118
           L  K  I S  Q N   +   +RIN  NG+ S  +S NL++LD FDDEY GVVV P RLP
Sbjct: 61  LTDKAVISSVGQDNFAAETSSHRINGTNGSISRFYSTNLKLLDAFDDEYGGVVVHPDRLP 120

Query: 119 SDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYW 178
           S+P  FAS+LR SL  W++M KKGIWLKLPL+ ++LVPIAVKEGF+YHHAEP Y+MLTYW
Sbjct: 121 SNPYTFASVLRLSLSQWKKMGKKGIWLKLPLDQSDLVPIAVKEGFQYHHAEPGYVMLTYW 180

Query: 179 IPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK 238
           IP+GP +LP NA+HQVGVGGFVINDNNEVLVVQE++C+P   GLWK+PTGFI E+EEI+ 
Sbjct: 181 IPEGPSMLPANASHQVGVGGFVINDNNEVLVVQERHCSPTTLGLWKIPTGFILEAEEIYT 240

Query: 239 GAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKW 298
           GAVREVKEETG+DTEFVEVIAFRHAHNVAF+KSDLFFICML+PLS++I VDDLEI  AKW
Sbjct: 241 GAVREVKEETGIDTEFVEVIAFRHAHNVAFEKSDLFFICMLRPLSSKIIVDDLEIAAAKW 300

Query: 299 MPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQ 358
           MP ++FV+QPLIQ D MFKK++DI IARL KRYCGL  HQ+VS FDG  SSLYYN  D  
Sbjct: 301 MPLVDFVEQPLIQEDSMFKKIVDIFIARLGKRYCGLSTHQVVSKFDGMVSSLYYNVIDNA 360

Query: 359 DTNCIG 364
           D NC+G
Sbjct: 361 DNNCVG 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540550|ref|XP_003538751.1| PREDICTED: nudix hydrolase 8-like [Glycine max]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/368 (63%), Positives = 275/368 (74%), Gaps = 13/368 (3%)

Query: 6   MELKLLGSKSVSASSIFQNG----GTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENS--- 58
           MELK L S SV  S     G    GT SS   +  S+R S QL    G+F R +E S   
Sbjct: 1   MELKSLTSNSVCTSEFVHVGRTRTGTYSSLLSNFRSVRVSRQLNCFGGLFRRNNEASNKI 60

Query: 59  YLC-KIGIGSSDQKNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRL 117
           YL  K  I S    N+  +   + IN  NG+ SS+ SRNLRVLD FDD Y+GVV+D  RL
Sbjct: 61  YLADKAVISSVGPHNLAAETSFHHINGTNGSTSSLCSRNLRVLDAFDDVYEGVVIDSDRL 120

Query: 118 PSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTY 177
           P +P  FA+ LRFSL HW++M KKGIWL+LP E ++ VPIA+KEGF+YHHAEP Y+MLTY
Sbjct: 121 PDNPSTFAANLRFSLSHWKKMGKKGIWLRLPSEQSDFVPIAIKEGFRYHHAEPGYVMLTY 180

Query: 178 WIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF 237
           WIP+GPC+LP NA+HQVGVGGFVIND++EVLVVQEK C PA  G WK+PTGF+ +SEE++
Sbjct: 181 WIPEGPCMLPANASHQVGVGGFVINDSSEVLVVQEKQCAPANRGQWKIPTGFVLQSEELY 240

Query: 238 KGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAK 297
            GA+REVKEETG+DTEFVEVIAFRHA NVAF+KSDLFFICML+PLS EI VDD EI+ AK
Sbjct: 241 AGAIREVKEETGIDTEFVEVIAFRHARNVAFEKSDLFFICMLRPLSAEIIVDDPEIEAAK 300

Query: 298 WMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDT 357
           WMP +EFV+QPLIQ D MFKK+IDICIA L KRYCGL  HQ+VS FDG++SSLYYN    
Sbjct: 301 WMPLVEFVEQPLIQEDSMFKKIIDICIACLEKRYCGLNAHQMVSKFDGKSSSLYYN---- 356

Query: 358 QDTNCIGN 365
              NCIG+
Sbjct: 357 -VINCIGS 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513760|ref|XP_003525578.1| PREDICTED: nudix hydrolase 8-like [Glycine max]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/294 (71%), Positives = 250/294 (85%), Gaps = 1/294 (0%)

Query: 71  KNIVKDDYVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRF 130
           +N+V  +++YRIN  NG+ S  +S NL++LD FDDEY GVVV P RLPS+P  FAS+LR 
Sbjct: 5   ENVVPCNFLYRINGTNGSISRFYSTNLKLLDAFDDEYGGVVVHPDRLPSNPYTFASVLRL 64

Query: 131 SLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNA 190
           SL  W++M KKGIWLKLPLE ++LVPIAVKEGF+YHHAEP Y+MLTYWIP GP +LP NA
Sbjct: 65  SLSQWKKMGKKGIWLKLPLEQSDLVPIAVKEGFQYHHAEPGYVMLTYWIPAGPSMLPANA 124

Query: 191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
           +HQVGVGGFVINDNNEVLVVQE++C+PA  GLWK+PTGFI E+EEI+ GAVREVKEETG+
Sbjct: 125 SHQVGVGGFVINDNNEVLVVQERHCSPATLGLWKIPTGFILEAEEIYTGAVREVKEETGI 184

Query: 251 DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310
           DT+F+EVIAFRHAHNVAF+KSDLFFICML+PLS+++ VDDLEI  AKWMP +EFV+QPLI
Sbjct: 185 DTDFIEVIAFRHAHNVAFEKSDLFFICMLRPLSSKVIVDDLEIAAAKWMPLVEFVEQPLI 244

Query: 311 QGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIG 364
           Q D MFKK++DI IARL KRYCGL  HQ+VS FDG  SSLYYN  D +D NC+G
Sbjct: 245 QEDSMFKKIVDIFIARLGKRYCGLSTHQVVSKFDGMVSSLYYNVIDNED-NCVG 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458978|ref|XP_004147223.1| PREDICTED: nudix hydrolase 8-like [Cucumis sativus] gi|449514676|ref|XP_004164447.1| PREDICTED: nudix hydrolase 8-like [Cucumis sativus]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/337 (63%), Positives = 258/337 (76%), Gaps = 7/337 (2%)

Query: 33  RHGVSIRFSPQLCSCRGVFPRVS-----ENSYLCKIGIGSSDQKNIVKDDYVYRINEVNG 87
           RH V  RFS +  SC G F R S      N   C   + S  Q  +  + + ++IN  NG
Sbjct: 20  RHQVQ-RFS-RCSSCIGKFSRASYSNGVPNKAYCSGAVSSIGQDKLPAEGFTHQINGTNG 77

Query: 88  AGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKL 147
             S +FSR+ R+LD  DD+YDG+V+DP  LPS+P  F+S LRFSL HW++  KKG+WLKL
Sbjct: 78  LSSKLFSRDRRLLDAVDDQYDGIVIDPNGLPSNPVVFSSNLRFSLSHWKKKGKKGVWLKL 137

Query: 148 PLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEV 207
            +E +EL+PIA+K GF+YHHAEPEYLMLTYWIPDGPC+LP NA+H VGVGGFVIND NEV
Sbjct: 138 LVEQSELIPIALKAGFQYHHAEPEYLMLTYWIPDGPCMLPSNASHHVGVGGFVINDRNEV 197

Query: 208 LVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA 267
           LVVQEKYC+PAFA  WK+PTGFI + EEI+ G  REVKEETG++TEF+EVIAFRHAHN+A
Sbjct: 198 LVVQEKYCSPAFANFWKIPTGFIVQKEEIYTGVTREVKEETGIETEFIEVIAFRHAHNIA 257

Query: 268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL 327
           F+KSDLFF+CML+PLSTEI VDDLEI+ AKWMP  EFV+Q L++ D MFKK+IDICIARL
Sbjct: 258 FEKSDLFFVCMLRPLSTEIIVDDLEIQAAKWMPLAEFVEQSLVKEDVMFKKIIDICIARL 317

Query: 328 RKRYCGLYPHQLVSAFDGQTSSLYYNDSDTQDTNCIG 364
            K YCGL  HQLVS FDG+ SSLYYN  + +D  C G
Sbjct: 318 DKYYCGLNVHQLVSKFDGKLSSLYYNTIEGEDLTCTG 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074201|ref|XP_002304298.1| predicted protein [Populus trichocarpa] gi|222841730|gb|EEE79277.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/267 (75%), Positives = 227/267 (85%)

Query: 99  VLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIA 158
           V D  DDEY GVVVDP RLP +PDAFA +L+FSL HW+   KKGIWLKLPLE +ELVP+A
Sbjct: 1   VFDACDDEYGGVVVDPDRLPVNPDAFAPMLQFSLSHWKMKGKKGIWLKLPLERSELVPVA 60

Query: 159 VKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPA 218
           VKEGF+YHHAE  Y+MLTYWIP+GPC+LP NATHQVGVGGFVIND NEVLVVQEK+  P+
Sbjct: 61  VKEGFEYHHAERGYVMLTYWIPEGPCMLPSNATHQVGVGGFVINDKNEVLVVQEKFYAPS 120

Query: 219 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 278
           FA LWK+PTGFI ESEEI+ GAVREVKEETGVDTEFVEVIAFRHAHN+ F KSDLFF+CM
Sbjct: 121 FADLWKIPTGFILESEEIYTGAVREVKEETGVDTEFVEVIAFRHAHNLDFDKSDLFFVCM 180

Query: 279 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQ 338
           LKPLS +IKVD+LEI+ AKWMPF+EFV QPLIQ D +FKK+IDIC+ARL K YCGL P Q
Sbjct: 181 LKPLSAQIKVDNLEIQAAKWMPFVEFVAQPLIQEDGLFKKIIDICLARLGKHYCGLLPRQ 240

Query: 339 LVSAFDGQTSSLYYNDSDTQDTNCIGN 365
           +VS FDG+ S LYYN  DT + NC GN
Sbjct: 241 VVSKFDGRPSCLYYNVLDTGNVNCNGN 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422772|ref|NP_568680.1| nudix hydrolase 8 [Arabidopsis thaliana] gi|68565908|sp|Q8L7W2.2|NUDT8_ARATH RecName: Full=Nudix hydrolase 8; Short=AtNUDT8 gi|332008107|gb|AED95490.1| nudix hydrolase 8 [Arabidopsis thaliana]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/361 (59%), Positives = 257/361 (71%), Gaps = 13/361 (3%)

Query: 15  SVSASSIFQNGGTTSSSFRHGV-----SIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSD 69
           SVS S +    GTT   F H        ++ SP+    +   P+   +S   K       
Sbjct: 3   SVSLSEVTVIKGTTHLGFMHSFRQPFCGVKISPKFYLSKVDGPKAISSSSNTKSQFVYGG 62

Query: 70  QKNIVKDDYVYRINEVNGAGSSIFSRNLR---VLDFFDDEYDGVVVDPKRLPSDPDAFAS 126
                  D  Y++N VN    ++ S  ++   +LD +DDEY GV+VD  +LPS+P AFAS
Sbjct: 63  GSIAATSDSGYKMNGVNLKSRTLMSSAVKERSLLDAYDDEYGGVIVDHGKLPSNPYAFAS 122

Query: 127 ILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCV 185
           +LR SL  WRR  KKG+WLKLP+E +ELVPIA+KEGF+YHHAE  Y+MLTYWIP+  P +
Sbjct: 123 MLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSM 182

Query: 186 LPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVK 245
           LP NA+HQVGVGGFV+N + EVLVVQEKYC P+  GLWKLPTGFI+ESEEIF GAVREVK
Sbjct: 183 LPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVK 242

Query: 246 EETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV 305
           EETGVDTEF EVIAFRHAHNVAF+KSDLFFICML+PLS +I +D LEIK AKWMP  EFV
Sbjct: 243 EETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFV 302

Query: 306 KQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYN----DSDTQDTN 361
           +QP+I+GD MFK+VI+IC ARL  RYCGL PH+LVS FDG+ SSLYYN    D D   +N
Sbjct: 303 EQPMIRGDKMFKRVIEICEARLSHRYCGLSPHRLVSTFDGKPSSLYYNVVDDDHDPSHSN 362

Query: 362 C 362
           C
Sbjct: 363 C 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794491|ref|XP_002865130.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310965|gb|EFH41389.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/342 (62%), Positives = 254/342 (74%), Gaps = 14/342 (4%)

Query: 31  SFRHGVS-IRFSPQLCSCRGVFPR--VSENSYLCKIGIGSSDQKNIVKDDYVYRINEVNG 87
           SFR   S +   P+ CS +   P+  +S N+    +  GS         D  Y+IN VN 
Sbjct: 22  SFRQPFSGVPIPPKFCSSKVGGPKATLSSNTKSQSVYGGSI----AATSDSGYKINGVNL 77

Query: 88  AGSSIFS--RNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWL 145
              ++ S  +   +LD +DDEY GV+VD  +LPS+P AFAS+LR SL  WRR  KKG+WL
Sbjct: 78  KSRTLISSVKERLLLDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWL 137

Query: 146 KLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCVLPGNATHQVGVGGFVINDN 204
           KLPLE +ELVPIA+KEGF+YHHAE  Y+MLTYWIP+  P +LP NA+HQVGVGGFV+N +
Sbjct: 138 KLPLEQSELVPIAIKEGFEYHHAEKRYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQH 197

Query: 205 NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH 264
            EVLVVQEKYC P+  GLWKLPTGFI+ESEEIF GAVREVKEETGVDTEF EVIAFRHAH
Sbjct: 198 KEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAH 257

Query: 265 NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 324
           NVAF+KSDLFFICML+PLS +I +D LEIK AKWMP  EFV+QP+I+ D MFK+VI+IC 
Sbjct: 258 NVAFEKSDLFFICMLRPLSDKIIIDGLEIKAAKWMPLAEFVEQPMIREDKMFKRVIEICK 317

Query: 325 ARLRKRYCGLYPHQLVSAFDGQTSSLYYN----DSDTQDTNC 362
           ARLR RYCGL PH+LVS FDG+ SSLYYN    D D   +NC
Sbjct: 318 ARLRHRYCGLSPHRLVSTFDGKPSSLYYNVVDDDHDPSHSNC 359

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2171544	369	NUDT8 "nudix hydrolase homolog	0.950	0.940	0.588	2.5e-106
TAIR|locus:2168993	278	NUDT2 "nudix hydrolase homolog	0.712	0.935	0.505	4.5e-66
TAIR|locus:2058364	302	NUDT5 "nudix hydrolase homolog	0.649	0.784	0.481	2e-56
TAIR|locus:2058334	283	NUDT6 "nudix hydrolase homolog	0.671	0.865	0.476	2.4e-53
DICTYBASE|DDB_G0281219	376	DDB_G0281219 "Nucleoside dipho	0.887	0.861	0.335	5.6e-45
FB|FBgn0030668	330	CG8128 [Drosophila melanogaste	0.558	0.618	0.367	4e-35
UNIPROTKB|F1NLN3	297	F1NLN3 "Uncharacterized protei	0.553	0.680	0.382	4.7e-32
UNIPROTKB|F1RQN4	314	NUDT6 "Uncharacterized protein	0.545	0.633	0.388	4.7e-32
UNIPROTKB|E2RC30	316	NUDT6 "Uncharacterized protein	0.545	0.629	0.377	9.8e-32
UNIPROTKB|A7YY29	257	NUDT6 "NUDT6 protein" [Bos tau	0.463	0.657	0.411	2.6e-31

TAIR|locus:2171544 NUDT8 "nudix hydrolase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 212/360 (58%), Positives = 256/360 (71%)

Query:    16 VSASSIFQNGGTTSSSFRHGV-----SIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSDQ 70
             VS S +    GTT   F H        ++ SP+    +   P+   +S   K        
Sbjct:     4 VSLSEVTVIKGTTHLGFMHSFRQPFCGVKISPKFYLSKVDGPKAISSSSNTKSQFVYGGG 63

Query:    71 KNIVKDDYVYRINEVNGAGSSIFSRNLR---VLDFFDDEYDGVVVDPKRLPSDPDAFASI 127
                   D  Y++N VN    ++ S  ++   +LD +DDEY GV+VD  +LPS+P AFAS+
Sbjct:    64 SIAATSDSGYKMNGVNLKSRTLMSSAVKERSLLDAYDDEYGGVIVDHGKLPSNPYAFASM 123

Query:   128 LRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCVL 186
             LR SL  WRR  KKG+WLKLP+E +ELVPIA+KEGF+YHHAE  Y+MLTYWIP+  P +L
Sbjct:   124 LRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSML 183

Query:   187 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKE 246
             P NA+HQVGVGGFV+N + EVLVVQEKYC P+  GLWKLPTGFI+ESEEIF GAVREVKE
Sbjct:   184 PANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKE 243

Query:   247 ETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
             ETGVDTEF EVIAFRHAHNVAF+KSDLFFICML+PLS +I +D LEIK AKWMP  EFV+
Sbjct:   244 ETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFVE 303

Query:   307 QPLIQGDCMFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYYN----DSDTQDTNC 362
             QP+I+GD MFK+VI+IC ARL  RYCGL PH+LVS FDG+ SSLYYN    D D   +NC
Sbjct:   304 QPMIRGDKMFKRVIEICEARLSHRYCGLSPHRLVSTFDGKPSSLYYNVVDDDHDPSHSNC 363

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2168993 NUDT2 "nudix hydrolase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 133/263 (50%), Positives = 170/263 (64%)

Query:    99 VLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIA 158
             +L    D+Y GV+ +    P DP  F+++LR SL  W    KKG+W+KLP +   L   A
Sbjct:    19 LLPSVQDKYGGVMTEMTH-PMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETA 77

Query:   159 VKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPA 218
             VKEGF +HHAE +YLML YWIP     LP NA+H+VG+G FVIN N EVLVVQEK     
Sbjct:    78 VKEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQ 137

Query:   219 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 278
               G+WK PTG ++E E+I  G+VREVKEETGVDTEF +++AFR  H   F KSDLFF+CM
Sbjct:   138 GQGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCM 197

Query:   279 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLYPHQ 338
             LKPLS EI   + EI+ A+WMP+ E++ QP +Q   + + + DIC A+    Y G  P +
Sbjct:   198 LKPLSLEINAQESEIEAAQWMPWEEYINQPFVQNYELLRYMTDICSAKTNGDYEGFTPLR 257

Query:   339 LVSAFDGQTSSLYYNDSDTQDTN 361
              VSA D Q  +LYYN  D    N
Sbjct:   258 -VSAPD-QQGNLYYNTRDLHSRN 278

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2058364 NUDT5 "nudix hydrolase homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 116/241 (48%), Positives = 159/241 (65%)

Query:    97 LRVLDFFDDEYDGVVVDPKRLPSDPDA-FASILRFSLIHWRRMNKKGIWLKLPLENAELV 155
             + +LD  +D + G VV+   + S     F S L  SL  W+   KKGIW+KLP E + LV
Sbjct:    27 ISLLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLV 86

Query:   156 PIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYC 215
               A+K+GF YHHAE EY+MLT+W+P+ P  LP NA+H++G+G FV+N N E+LVVQE   
Sbjct:    87 DTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSG 146

Query:   216 NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ-KSDLF 274
                   +WK+PTG I E E I+ GAVREVKEET +D EFVEV++F  +H   +Q K+D+F
Sbjct:   147 YFKDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESHQAVWQRKTDIF 206

Query:   275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI--QGDCMFKKVIDICIARLRKRYC 332
             F+C L+  + EI+  D EI  AKWMP  E+V QP    +G+ MFK + +IC+ R R++Y 
Sbjct:   207 FVCELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIANICLKRSREKYT 266

Query:   333 G 333
             G
Sbjct:   267 G 267

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2058334 NUDT6 "nudix hydrolase homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 121/254 (47%), Positives = 159/254 (62%)

Query:   105 DEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLP--LENAELVPIAVKEG 162
             D Y GV V+    P   + F   LR SL++W     KGIWLKL   L+N  L+  A  EG
Sbjct:    16 DNYGGVKVNLTE-PMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDN--LIAPAKAEG 72

Query:   163 FKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQEKYCNPAFAG 221
             F  HHAE EY MLT WI D P  LP NA+H++GVG FV+N    EVLVVQE   +    G
Sbjct:    73 FVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTG 132

Query:   222 LWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ-KSDLFFICMLK 280
             +WKLPTG + E E I++GA+REV+EETG+ T+FVEV+AFR +H    + K+D+FF+C L+
Sbjct:   133 VWKLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLCELE 192

Query:   281 PLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK-RYCGLYPHQL 339
             P + EIK  D EI  AKWMP  E+V QP  Q   +F+ + +IC+ RL++  Y G +   L
Sbjct:   193 PTTFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMG-FSKVL 251

Query:   340 VSAFDGQTSSLYYN 353
              +   G+ S LY N
Sbjct:   252 TTTSSGKESYLYCN 265

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0051707 "response to other organism" evidence=IEP

GO:0035529 "NADH pyrophosphatase activity" evidence=IDA

GO:0080151 "positive regulation of salicylic acid mediated signaling pathway" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

DICTYBASE|DDB_G0281219 DDB_G0281219 "Nucleoside diphosphate-linked moiety X motif 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 116/346 (33%), Positives = 176/346 (50%)

Query:    24 NGGTTSSSFRHGVSIRFSPQLCSCRGVFPRVSENSYLCKIGIGSSDQKNIVKDDYVYRIN 83
             N    +S F+   +       CS        +  + L KI    S+   ++ D+    +N
Sbjct:    40 NNKNNNSKFKLNCNNNNIRYFCSKPITTTTTTTKTNLLKITKNMSESSKLL-DNKKIELN 98

Query:    84 EVNGAGSSIFSRNLRVLDFFDDEYDGVVV-DPKRLP--SDPDA---FASILRFSLIHWRR 137
             E       +  +   +L    D +DG++V D  + P  S  D+   F  I++ SL  W  
Sbjct:    99 EKYN-DPKLIEKG--ILAGIPDIFDGIIVKDTTQYPKGSGEDSVSKFKEIIKNSLQFWTE 155

Query:   138 MNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDG-PCVLPGNATHQVGV 196
               ++GIW+++P  N+ L+P  V+ GF +HH +  Y+MLT W+P G P  LP   +H +G 
Sbjct:   156 NKRRGIWIEIPETNSILIPTLVENGFSFHHCQSNYIMLTKWLPIGEPNKLPHYTSHFIGC 215

Query:   197 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE 256
             GG VIND NE+L++ EK   P     WK+P G  D  E+I + AVREV EETG+ TEFV 
Sbjct:   216 GGVVINDRNEILLITEKQ-RP---DKWKIPGGANDPGEDICETAVREVWEETGIRTEFVS 271

Query:   257 VIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF--VKQPLIQGDC 314
             ++  R  HN AF + D++FIC LKPLS+EI  D  EI   KW P  EF  ++ P      
Sbjct:   272 ILGLRQLHNYAFNRGDIYFICALKPLSSEINSDPSEIAQCKWAPVKEFTEIETPFPLQKS 331

Query:   315 MFKKVIDICIARLRKRYCGLYPHQLVSAFDGQTSSLYY-NDSDTQD 359
             + +   D C       Y G+    + ++     S +Y+ +D+D +D
Sbjct:   332 VSRLAYDYCF----NGYKGMKASAVANSLRAGNSFVYHGSDTDFED 373

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0030668 CG8128 [Drosophila melanogaster (taxid:7227)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 76/207 (36%), Positives = 116/207 (56%)

Query:   105 DEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFK 164
             D + GV VD +    D  +F   L  SL  W     + IW ++  E ++ VPI  + GF 
Sbjct:    72 DRFAGVTVDGREENVDKSSFRDKLTKSLDFWTTNKNRAIWFRVYKEQSDWVPILAENGFD 131

Query:   165 YHHAEPEYLMLTYWIPDGPCV-LPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLW 223
             +HHA+   +++  W+P+     LP  A   +GVGG VIN+ +EVLVV +++        W
Sbjct:   132 FHHAKTGVVVMYRWLPEHESSNLPTYAHTLMGVGGLVINEQDEVLVVSDRFA--MIPNSW 189

Query:   224 KLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLS 283
             KLP G+++  E +   A+REV EETG+ TEF  V++ RHAH   F  SD++ +  LKPL+
Sbjct:   190 KLPGGYVEPRENLIDAAIREVAEETGIRTEFRSVVSLRHAHGGTFGCSDMYVVIALKPLN 249

Query:   284 TEIKVDDLEIKGAKWMPFMEFVKQPLI 310
              +    + EI   +WMP  E++K P +
Sbjct:   250 LDFTRCEREIARIQWMPIAEYLKHPQV 276

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1NLN3 F1NLN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 81/212 (38%), Positives = 118/212 (55%)

Query:   102 FFDDEYDG--VVVDPKRLPSDPD--AFASILRFSLIHWRRMNKKGIWLKLPLENAELVPI 157
             F  D+Y G  V +   R P   +  AF   LR S+  W++  +  +WL +P+  + L  +
Sbjct:    32 FKPDKYGGGNVELAELRRPRRRERAAFGRWLRASVAQWQQEGRVAVWLHVPIFQSGLAAV 91

Query:   158 AVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQEKYCN 216
             A  +GF +HHAE     LT W+ +GP  LP  A+HQ+GV G V+++N+ +VLVVQ++  N
Sbjct:    92 AASQGFAFHHAESGSATLTRWLGEGPSRLPAFASHQLGVAGAVLDENSGKVLVVQDR--N 149

Query:   217 PAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR--HAHNVAFQKSDLF 274
                 G WK P G  +  E+I   AVREV EETG+ +EF  +++ R  H H  AF KSD++
Sbjct:   150 KTVNG-WKFPGGLSNPGEDIGDTAVREVFEETGIKSEFKSILSIRQQHKHPGAFGKSDMY 208

Query:   275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
              IC L+P S  I     E    +WM   E  +
Sbjct:   209 IICRLQPSSFTINFCQQECLRCEWMDLDELAR 240

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RQN4 NUDT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 80/206 (38%), Positives = 112/206 (54%)

Query:   105 DEYDGVVVDPKRLPS-DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGF 163
             D + GV V    L   D  AF   L+ ++  WR   +  +WL +P+  +  +  A   GF
Sbjct:    52 DRFGGVSVKLDALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGF 111

Query:   164 KYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNE-VLVVQEKYCNPAFAGL 222
              +HHAE +   LT W+  GP  LPG ATHQVGV G V ++N + +LVVQ++  N     +
Sbjct:   112 CFHHAESDSSTLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDR--NK-LKNM 168

Query:   223 WKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSDLFFICMLK 280
             WK P G  +  E+I   AVREV EETG+ +EF+ +++ R  H    AF KSD++ IC LK
Sbjct:   169 WKFPGGLSEPGEDIGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLK 228

Query:   281 PLSTEIKVDDLEIKGAKWMPFMEFVK 306
             P S  I     E    +WM   + VK
Sbjct:   229 PRSFIINFCQHECLRCEWMDLSDLVK 254

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2RC30 NUDT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 79/209 (37%), Positives = 115/209 (55%)

Query:   105 DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 160
             D + GV V   RL +    D  +F   L+ ++  WR   +  +WL +P+  +  +  A  
Sbjct:    51 DRFGGVSVQLARLGALDRLDAASFRRGLQAAIQQWRSEGRIAVWLHIPILQSRFIAPAAS 110

Query:   161 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN-EVLVVQEKYCNPAF 219
              GF +HHAE +   LT W+ +GP  LPG ATHQ+GV G V ++N  ++LVVQ++  N   
Sbjct:   111 LGFCFHHAESDSSTLTLWLGEGPSRLPGYATHQLGVAGAVFDENTRKILVVQDR--NK-L 167

Query:   220 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR--HAHNVAFQKSDLFFIC 277
               +WK P G  +  E+I   AVREV EETG+ +EF  +++ R  HA   AF KSD++ IC
Sbjct:   168 KNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFKSLLSIRQQHASPGAFGKSDMYIIC 227

Query:   278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
              LKP S  I     E    +WM   + +K
Sbjct:   228 RLKPYSFTINFCQHECLRCEWMDLNDLIK 256

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|A7YY29 NUDT6 "NUDT6 protein" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/175 (41%), Positives = 100/175 (57%)

Query:   135 WRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQV 194
             WR   +  +WL +P+  +  +  A   GF +HH E +  ML+ W+ DGP  LPG ATHQV
Sbjct:    26 WRSEGRVAVWLHIPILQSRFIAPAASLGFCFHHTESDSSMLSLWLGDGPSRLPGYATHQV 85

Query:   195 GVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
             GV G V ++N  ++LVVQ++  N     +WK P G  +  E+I   AVREV EETG+ +E
Sbjct:    86 GVAGAVFDENTRKILVVQDR--NK-LKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSE 142

Query:   254 FVEVIAFR--HAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
             F  +++ R  H H  AF KSD++ IC LKP S  I     E    +WM   + VK
Sbjct:   143 FRSLLSIRQQHTHPGAFGKSDMYIICRLKPYSFTINFCQRECLKCEWMNLSDLVK 197

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W2	NUDT8_ARATH	3, ., 6, ., 1, ., -	0.5900	0.9534	0.9430	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.766
3rd Layer	3.6.1.13	0.824
3rd Layer	3.6.1.22	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	4e-67
pfam00293	133	pfam00293, NUDIX, NUDIX domain	3e-22
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	7e-17
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	3e-14
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	2e-12
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	4e-12
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	5e-12
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	7e-12
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	5e-11
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	6e-11
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	2e-10
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	3e-10
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	9e-10
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	2e-09
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	3e-08
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	4e-08
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	8e-08
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	1e-07
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	2e-07
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	7e-07
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	5e-06
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	7e-06
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	1e-05
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	2e-05
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	2e-05
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	3e-05
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	4e-05
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	4e-05
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	4e-05
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	5e-05
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	5e-05
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	5e-05
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	1e-04
COG2816	279	COG2816, NPY1, NTP pyrophosphohydrolases containin	1e-04
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	1e-04
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	2e-04
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	3e-04
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	5e-04
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	8e-04
TIGR00586	128	TIGR00586, mutt, mutator mutT protein	0.001
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	0.001
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	0.001

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  207 bits (529), Expect = 4e-67
 Identities = 76/132 (57%), Positives = 92/132 (69%), Gaps = 5/132 (3%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
           H VGVGG V+N+ NEVLVVQE+   P     WKLP G +D  E+IF GAVREV EETG+D
Sbjct: 1   HTVGVGGLVLNEKNEVLVVQERNKTP---NGWKLPGGLVDPGEDIFDGAVREVLEETGID 57

Query: 252 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311
           TEFV V+ FRHAH  AF KSDL+FIC LKPLS +I  D  EI  AKWMP  E++ QP+  
Sbjct: 58  TEFVSVVGFRHAHPGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITS 117

Query: 312 GDCMFKKVIDIC 323
              + + ++DIC
Sbjct: 118 E--VNRLILDIC 127

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 90.6 bits (225), Expect = 3e-22
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
            +  VG  ++N++ EVL+V+     P F GLW+LP G ++  E   + AVRE++EETG+ 
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSR-PPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLR 59

Query: 252 ---TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308
                 + V+ +        +     F+  L     E + ++ E+   +W+P  E ++  
Sbjct: 60  VLLLLLLGVLEYPAPGRDGGEHVH-VFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELL 118

Query: 309 L 309
           L
Sbjct: 119 L 119

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 75.6 bits (186), Expect = 7e-17
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V VG  +++++  VL+V+      +  GLW+LP G ++  E + + A+REV+EETG+D +
Sbjct: 1   VAVGAVILDEDGRVLLVRRAD---SPGGLWELPGGGVEPGETLEEAAIREVREETGLDVD 57

Query: 254 -------FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 300
                  +         H V F      F+  L      +   D EI   +W+ 
Sbjct: 58  VLRLLGVYEVESPDEGEHAVVF-----VFLARLVGGEPTLLPPD-EISEVRWVT 105

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 16/123 (13%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V VG  +I  N  +L+V+    N   AG W LP GF++  E + + A RE+KEETG+   
Sbjct: 11  VAVGA-LIVRNGRILLVRRA--NEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVR 67

Query: 254 FVEVIAFRH-------AHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
            +E++A           H+V+F    LFF    +P    +  D  +     W P  E  +
Sbjct: 68  VLELLAVFDDPGRDPRGHHVSF----LFFAA--EPEGELLAGDGDDAAEVGWFPLDELPE 121

Query: 307 QPL 309
            PL
Sbjct: 122 LPL 124

Length = 145

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 17/117 (14%)

Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD- 251
             GV   V +D   VL+++      +  GLW LP G ++  E     AVREV+EETG+D 
Sbjct: 2   LPGVTAVVRDDEGRVLLIRR-----SDNGLWALPGGAVEPGESPADTAVREVREETGLDV 56

Query: 252 --TEFVEVIAFRHAHNVAF------QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 300
             T  V +      H V +      Q  D+ F C  + +  E++V D E     W  
Sbjct: 57  EVTGLVGIYTGPV-HVVTYPNGDVRQYLDITFRC--RVVGGELRVGDDESLDVAWFD 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           +G    V + +  VL+V+  Y        W LP G ++  E   + A RE+ EE G+   
Sbjct: 1   LGARAVVTDADGRVLLVRHTY-----GPGWYLPGGGLERGETFAEAARRELLEELGIRLA 55

Query: 254 FVEVIAFRHAHNVAFQKSD--LFFICMLKPLSTEIKVDDLEIKGAKWMP 300
            V        ++ A    D  + F    +  +  +     EI  A++ P
Sbjct: 56  -VVAELLGVYYHSASGSWDHVIVFRA--RADTQPVIRPSHEISEARFFP 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
           +V V   +  D  ++L+V+EK       GLW LP G+ D      +  V+EVKEETG+D 
Sbjct: 2   KVDVRAAIFKDG-KILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV 55

Query: 253 EFVEVIAF-----RHAHNVAFQKSDLFFIC 277
           +  ++ A       H     +Q   LFF+C
Sbjct: 56  KVRKLAAVDDRNKHHPPPQPYQVYKLFFLC 85

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 61.5 bits (150), Expect = 7e-12
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V VG  V      VL+V+    NP  AGLW  P G ++  E + + A+RE+ EETG++ E
Sbjct: 1   VAVGAVVF-RGGRVLLVRRA--NPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAE 57

Query: 254 F------VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307
                  V+VI    A  V F    + F+C  + L  E    D +   A+W+P  E    
Sbjct: 58  VGRLLTVVDVIERDAAGRVEFHYVLIDFLC--RYLGGEPVAGD-DALDARWVPLDELAAL 114

Query: 308 PL 309
            L
Sbjct: 115 SL 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD-TEF 254
           VG  ++N++ E+LVV+     P   G   LP GF+D  E   +  +RE++EETG+  TE 
Sbjct: 4   VGVLILNEDGELLVVRRAR-EPG-KGTLDLPGGFVDPGESAEEALIREIREETGLKVTEL 61

Query: 255 VEVIAFRHAH---NVAFQKSDLFFICMLKPLSTEIKVDDLE 292
             + +  + +    + +   DLFF+C +         DD+ 
Sbjct: 62  SYLFSLPNTYPYGGMEYDTLDLFFVCQVDDKPIVKAPDDVA 102

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
            V V   ++ D   +L+++         G W+LP G ++E E   +   REV EETG+  
Sbjct: 1   VVAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60

Query: 253 EFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF 304
                      H  +   + ++ + + + LS  +K+ D E +   W+   E 
Sbjct: 61  TPFLRYPSTVTHEDSGVYNVIYLVFVCEALSGAVKLSD-EHEEYAWVTLEEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 196 VGGFVINDNNEVLVVQE--KYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V   ++N+  EVL++QE  + C     G W LP G ++  E I +   REVKEETG+D E
Sbjct: 3   VAAVILNNQGEVLLIQEAKRSCR----GKWYLPAGRMEPGETIEEAVKREVKEETGLDCE 58

Query: 254 FVEVIA 259
              +++
Sbjct: 59  PTTLLS 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)

Query: 193 QVGVGGFVIN---DNNEVLVV-QEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 248
            +  GG V        EVL++ + +         W LP G ++  E   + AVREV+EET
Sbjct: 1   VLAAGGVVFRGSDGGIEVLLIHRPRG------DDWSLPKGKLEPGETPPEAAVREVEEET 54

Query: 249 GVDTEFVEVIAFRHAHNVAFQKSDL----FFICMLKPLSTEIKVD-DLEIKGAKWMPFME 303
           G+  E  + +        +  K       ++  +++ L  E     D E+   +W+P  E
Sbjct: 55  GIRAEVGDPLGTIRYWFSSSGKRVHKTVHWW--LMRALGGEFTPQPDEEVDEVRWLPPDE 112

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
           +VGVG FV+N   +VL+   K      AG W LP G ++  E   + A REV EETG+  
Sbjct: 2   RVGVGVFVLNPKGKVLL--GKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHI 59

Query: 253 EFVEVIAF 260
           E V+ +  
Sbjct: 60  ENVQFLTV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 195 GVGGFVINDNNEVLVVQEKYCNPA-FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
            VG  + N++ +V V            G W+ P G IDE E+  + A+RE++EETG+D +
Sbjct: 5   NVGVVLFNEDGKVFV-----GRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPD 59

Query: 254 FVEVIA 259
            VE+IA
Sbjct: 60  SVEIIA 65

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 15/119 (12%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           VG G  ++N+  EVL+ Q++    +  G W LP G ++  E + + A RE+KEETG++ E
Sbjct: 8   VGAGVILLNEQGEVLL-QKR----SDTGDWGLPGGAMELGESLEETARRELKEETGLEVE 62

Query: 254 FVEVIA-------FRHAHN-VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEF 304
            +E++        +   +         L+++  +     ++  D  E    K+    E 
Sbjct: 63  ELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVF--GGKLVPDGDETLELKFFSLDEL 119

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 16/118 (13%)

Query: 198 GFVI----NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           G +I    N+  E L++Q  Y      G W  P G ++  E+  + A+RE +EETG+  E
Sbjct: 6   GAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAE 59

Query: 254 FVEVIA-FRHAHN---VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307
            + ++  F+   N       K+  +F+  L+P   E+K+ + E +  +W+P+ E +K 
Sbjct: 60  QLFIVLGFKETLNYQVRGKLKTVTYFLAELRP-DVEVKLSE-EHQDYRWLPYEEALKL 115

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 197 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
           G  ++N+ N+VL+VQEK       GLW +P+G +++ E     AVRE  EETG+    V
Sbjct: 17  GAVILNERNDVLLVQEK--GGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV 73

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 30/127 (23%)

Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
           VI  + ++L++Q+      + G W LP G I+  E   +   REV EETG+    VE+  
Sbjct: 6   VIPRDGKLLLIQKN--GGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLT---VEIGR 60

Query: 260 F--------------RHAHNVAFQKSDLFFICML---KPLSTEIKVDDLEIKGAKWMPFM 302
                            AH++       F+   +        E   D     GA W+P  
Sbjct: 61  RLGSASRYFYSPDGDYDAHHLCV-----FYDARVVGGALPVQEPGEDSH---GAAWLPLD 112

Query: 303 EFVKQPL 309
           E +++ L
Sbjct: 113 EAIERLL 119

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
           V   +I+D+  +L+ Q         GLW+ P G ++  E   +  VRE++EE G++ E  
Sbjct: 4   VAAIIIDDDGRILIAQRPA-GKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG 62

Query: 256 EVIA-FRHA 263
           E++A   H 
Sbjct: 63  ELLATVEHD 71

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           VG G  ++ D+ ++L+V+     P  AG W +P G +D  E +    VRE++EETG+   
Sbjct: 3   VGCGAAILRDDGKLLLVKRLR-APE-AGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIH 60

Query: 254 FVEVIA 259
              ++ 
Sbjct: 61  STRLLC 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 203 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH 262
               VL+++    +  +AG W+  TG I++ E   + A REV EETG+D E + ++  R 
Sbjct: 13  GEGRVLLLRR---SDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLD-RG 68

Query: 263 AHNVAFQKSDLFFICMLKPLSTEIKVD-----DLEIKGAKWMPFMEFVKQ 307
           A     + +D   +    P +  +  D     D E    +W+P  E    
Sbjct: 69  ASIAFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAAL 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 16/145 (11%)

Query: 199 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGA-VREVKEETGVD------ 251
              +   EVL+ Q         GLW+LP G ++  EE+ + A  RE++EETG+       
Sbjct: 18  VGRDGPGEVLLAQR----RDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERL 73

Query: 252 ---TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDL--EIKGAKWMPFMEFVK 306
               EF        +      +                 +     E++  +W+P  E   
Sbjct: 74  ELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAA 133

Query: 307 QPLIQGDCMFKKVIDICIARLRKRY 331
             L +          + +       
Sbjct: 134 LVLAEDQVKRDAKKALLLLLFLALK 158

Length = 161

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
           VG  ++N   +V   + +         W+ P G ID  E   +   RE+ EE G+  E V
Sbjct: 11  VGIILLNRQGQVFWGR-RIGQG---HSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDV 66

Query: 256 EVIA 259
           E++A
Sbjct: 67  EILA 70

Length = 156

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 221 GLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE---VIAFRHAHNVAFQKSDLFFIC 277
           G W LP GF++  E   +GA+RE  EE G   E      V +  H   V      +F+  
Sbjct: 38  GFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVPHISQV-----YMFYRA 92

Query: 278 MLKPLSTEIKVDDLEIK 294
            L  L      + LE++
Sbjct: 93  RLLDLDFAPGPESLEVR 109

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 11/61 (18%)

Query: 198 GFVIND-----NNEVLVVQEKYCNPAFAG--LWKLPTGFIDESEEIFKGAVREVKEETGV 250
            FV  D     +  VL+V+ +    A  G  LW LP GF+++ E +    +RE++EETG+
Sbjct: 202 TFVTVDAVVVQSGHVLLVRRR----AEPGKGLWALPGGFLEQDETLLDACLRELREETGL 257

Query: 251 D 251
            
Sbjct: 258 K 258

Length = 340

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 18/113 (15%)

Query: 200 VINDNNEVLVVQEKYCNPAFA-GLWKLPTGFID--ES-EEIFKGAV-REVKEETGVDTEF 254
           VI+  + +L+ +     P F  G++ L  GF++  ES EE    AV REVKEE G+    
Sbjct: 7   VIDGGDRILLAR----QPRFPPGMYSLLAGFVEPGESLEE----AVRREVKEEVGIR--- 55

Query: 255 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307
           V+ I +  +    F  S L      +  S EI VDD E++ A+W    + V+ 
Sbjct: 56  VKNIRYVGSQPWPF-PSSLMLGFTAEADSGEIVVDDDELEDARWFS-RDEVRA 106

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 200 VINDNNEVLVVQEKYCNPAFAGL-WKLPTGFIDESEEIFKGAVREVKEETGVD---TEFV 255
           V+  +   L+V+E+       GL +  P G ++  E + + AVRE  EETG     T  +
Sbjct: 6   VVERDGRFLLVEEE----TDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALL 61

Query: 256 EVIAFRH-AHNVAFQKSDLF-FICMLKPLSTEIKVDDLEIKGAKWMPFMEF 304
            +  +     +  + +   F F   L     +  +D   I  A W+   E 
Sbjct: 62  GIYQWTAPDSDTTYLR---FAFAAELLEHLPDQPLDS-GIVRAHWLTLEEI 108

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 223 WKLPTGFIDESEEIFKGAVREVKEETG-----VDTEFVEVIAFRHAH---NVAFQKSDLF 274
           +K P G +++ E+  +G +RE++EETG     V  +F      R         F     +
Sbjct: 24  YKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYY 83

Query: 275 FICMLKPLSTEIKVDDLEIK---GAKWMPFME 303
           ++C +       +++D E +      W+   E
Sbjct: 84  YLCEVDAELGAQQLEDYEAELGMKPIWINIHE 115

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 195 GVGGFVINDNNEVLVVQEKYCNPAFAG-LWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
            V     +D+ +V++V++ Y  P   G L +LP G ID  E+  + A RE++EETG +  
Sbjct: 4   AVAVLPYDDDGKVVLVRQ-YR-PPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAG 61

Query: 254 FVEVI 258
            +E +
Sbjct: 62  DLEKL 66

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
            I D ++VL++  K       G W  P G ++  E   + A+RE+KEETG+
Sbjct: 7   FIKDPDKVLLLNRK--KGPGWGGWNGPGGKVEPGETPEECAIRELKEETGL 55

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR 261
           + L+V  +   P   G   LP GFI+  E       RE+ EETGV  +  ++  F 
Sbjct: 15  DGLLVIRRGIEPG-RGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFD 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 219 FAGLWKLPTGFIDESEEIFKGAVREVKEETGV--DTEFVEVIAFRHAHNVAF-QKSDLFF 275
             G W LP G +++ E+    AVRE +EE GV  D E + +    H        +  LFF
Sbjct: 24  MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGLFF 83

Query: 276 IC 277
             
Sbjct: 84  TV 85

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V VG  +   +  +L+V+       + GLW +P G ++  E + +   RE +EETG+   
Sbjct: 3   VTVGALIYAPDGRILLVRTT----KWRGLWGVPGGKVEWGETLEEALKREFREETGLKLR 58

Query: 254 FVEVIAFRHA-HNVAFQKSDLF----FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308
            ++    + A  +  F K   F    F        TE+  ++ EI   +W+   E +  P
Sbjct: 59  DIKFAMVQEAIFSEEFHKPAHFVLFDFFARTDG--TEVTPNE-EIVEWEWVTPEEALDYP 115

Query: 309 L 309
           L
Sbjct: 116 L 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 219 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 278
           F G++ L  GF++  E + +   REV EE G+    V+ + +  +    F  S L    M
Sbjct: 166 FPGMYSLLAGFVEPGETLEQAVAREVFEEVGIK---VKNVRYVGSQPWPFPHS-LMLGFM 221

Query: 279 LKPLSTEIKVDDLEIKGAKW 298
            +  S EI  D+ E++ A+W
Sbjct: 222 AEYDSGEITPDEGELEDARW 241

Length = 279

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 19/124 (15%)

Query: 199 FVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV 257
           FV+N D  +VL+   +       G W  P G ID  E + + A+RE++EETG++   +  
Sbjct: 8   FVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP 62

Query: 258 IAFR------------HAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV 305
           ++                        DL F+ +           D E    +W P  E  
Sbjct: 63  LSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSD-ESDAVRWFPLDELA 121

Query: 306 KQPL 309
              L
Sbjct: 122 SLEL 125

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 220 AGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
              W+  TG ++E E   + A+REVKEETG+D 
Sbjct: 30  PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62

Length = 148

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 219 FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICM 278
           + G W LP G  +  E   +  +RE+ EE G+      +  FR   + +   ++  F+  
Sbjct: 27  YPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVFVVP 86

Query: 279 LKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
           L      I   D E +  + M   EF+ 
Sbjct: 87  LTAREDAILFGD-EGQALRLMTVEEFLA 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 13/65 (20%)

Query: 200 VINDNNEVLVVQ-----EKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
           +IND  E+L+++     + Y        +  P G I+E E   + A RE  EE G+D   
Sbjct: 7   IINDQGEILLIRRIKPGKTY--------YVFPGGGIEEGETPEEAAKREALEELGLDVRV 58

Query: 255 VEVIA 259
            E+  
Sbjct: 59  EEIFL 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 197 GGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
           G  ++N++ ++VL+V+        +  W  P G I++ E+    A+REV EETG D
Sbjct: 5   GAIILNEDLDKVLLVKGW-----KSKSWSFPKGKINKDEDDHDCAIREVYEETGFD 55

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|200031 TIGR00586, mutt, mutator mutT protein

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
            Q    G + N+N E+++ + +     FA L + P G  +  E   +  VRE++EE G+ 
Sbjct: 3   LQQIAVGIIRNENGEIIITR-RADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIP 61

Query: 252 TEFVE 256
             F E
Sbjct: 62  QHFSE 66

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Lowering the threshold picks up members of MutT superfamily well [DNA metabolism, DNA replication, recombination, and repair]. Length = 128

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
           VGV   + + + ++L+ +       F  +W  P G ++  E + +  +RE+ EETG+
Sbjct: 2   VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 200 VINDNNEVLVVQEKYCNPAFAGLW-KLPTGFIDESEEIFKGAVREVKEETGVDTE----- 253
           VI  N+++L+++         G+W  LP G  +  E +   A RE KEE G+D E     
Sbjct: 7   VIIKNDKILLIKHHDDG----GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLL 62

Query: 254 FV-EVIAFRHA--HNVAFQKSDLFFICMLK---PLSTEIKVDDLEIKGAKWMPFMEFVKQ 307
           FV E I           F + +L F C +K   P  T  K D  +I G +W+   E    
Sbjct: 63  FVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQI-GVEWLKLKELGDI 121

Query: 308 PL 309
           PL
Sbjct: 122 PL 123

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	100.0
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.87
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.81
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.8
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.8
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.8
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.8
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.8
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.79
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.79
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.79
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.78
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.78
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.78
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.78
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.78
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.78
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.78
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.77
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.77
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.77
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.77
PLN02325	144	nudix hydrolase	99.77
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.77
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.77
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.77
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.77
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.76
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.76
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.75
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.75
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.75
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.75
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.74
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.74
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.74
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.74
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.73
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.73
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.73
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.73
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.73
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.72
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.72
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.72
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.72
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.71
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.71
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.71
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.7
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.7
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.7
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.7
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.7
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.69
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.69
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.68
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.68
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.67
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.67
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.67
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.66
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.66
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.65
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.64
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.63
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.63
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.63
PRK10707	190	putative NUDIX hydrolase; Provisional	99.6
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.57
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.55
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.55
PRK08999	312	hypothetical protein; Provisional	99.53
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.52
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.52
PLN03143	291	nudix hydrolase; Provisional	99.52
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.5
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.49
PLN02709	222	nudix hydrolase	99.44
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.41
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.41
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.38
PLN02791	770	Nudix hydrolase homolog	99.28
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.28
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.2
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.17
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.03
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.82
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.81
PLN02839	372	nudix hydrolase	98.62
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.61
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.5
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	97.63
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.34
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.12
KOG4195	275	consensus Transient receptor potential-related cha	97.02
PRK10880	350	adenine DNA glycosylase; Provisional	96.61
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	95.15
COG4111	322	Uncharacterized conserved protein [General functio	94.39
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	94.08
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	93.78
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	93.49
PRK13910	289	DNA glycosylase MutY; Provisional	92.61
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	91.93
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	88.93
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	87.87

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-45  Score=346.38  Aligned_cols=263  Identities=51%  Similarity=0.850  Sum_probs=250.8

Q ss_pred             ccccccccccCCCcEEEcCCCCCCChHHHHHHHHhhhhcceecCeEEEEEEeeccccccchHHHhcceeeecCCcceeec
Q 017817           96 NLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLML  175 (365)
Q Consensus        96 ~~~~~~~~~D~~~gv~v~~~~~~~~~~~f~~~l~~sl~~W~~~~~r~vWl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l  175 (365)
                      +..++.|..|+||||+|++-..+.|+..|.+.|++|+..|+.+|++++|+++|...+++++.+++.||.|||++.+|+|+
T Consensus        18 ~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l   97 (295)
T KOG0648|consen   18 GSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVML   97 (295)
T ss_pred             chhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceee
Confidence            36799999999999999997666799999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee
Q 017817          176 TYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV  255 (365)
Q Consensus       176 ~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~  255 (365)
                      ++|+++.+.++|+++.|+++|+++|+|.+++||+++++++.....|.|++|+|.|++||++.++|+||++||||++.++.
T Consensus        98 ~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~  177 (295)
T KOG0648|consen   98 TSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFV  177 (295)
T ss_pred             eeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhh
Confidence            99999999999999999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             EEEEEEeeccccCc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCC
Q 017817          256 EVIAFRHAHNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG  333 (365)
Q Consensus       256 ~ll~~~~~~~~~~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g  333 (365)
                      +++.+++.|...+.  +.++|++|.++|.+.+++.+..|+.+++|||++++..++..+...+++.+...|++++...|.|
T Consensus       178 eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~~~~~~~~  257 (295)
T KOG0648|consen  178 EVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNRLEEFYLG  257 (295)
T ss_pred             hHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHHHhhhcCC
Confidence            99999999988877  8999999999999899999999999999999999999999888888889999999999999999


Q ss_pred             CCCCCCccCcchhhHHHHHHhcCCC
Q 017817          334 LYPHQLVSAFDGQTSSLYYNDSDTQ  358 (365)
Q Consensus       334 ~~~~~l~~~f~~~~~~ly~~~~~~~  358 (365)
                      +....++..++.+..+||+|..+.+
T Consensus       258 ~~~~~l~~~~~~k~~~ly~~~~~~~  282 (295)
T KOG0648|consen  258 LTAIVLTTTYTGKESYLYYNEDHAN  282 (295)
T ss_pred             ccceeccccccCcccccccccchhh
Confidence            9999999999999999999998743

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=1.1e-21  Score=165.76  Aligned_cols=125  Identities=58%  Similarity=0.993  Sum_probs=99.5

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      |.++|+++|+|++++|||++++..   .++.|.+|||++++||++.+||+||++||||+++.....++....+...+...
T Consensus         1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   77 (127)
T cd04670           1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKS   77 (127)
T ss_pred             CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCce
Confidence            568899999999999999988532   57899999999999999999999999999999998888777655554445556


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID  321 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~  321 (365)
                      +++|++.+......+..+++|+.+++|++++++.+.++.+.  +.+.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~--~~~~~~~  125 (127)
T cd04670          78 DLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE--VNRLILD  125 (127)
T ss_pred             eEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH--HHHHHHh
Confidence            67788777544444555678889999999999988877664  3444444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=4.6e-19  Score=149.38  Aligned_cols=111  Identities=19%  Similarity=0.306  Sum_probs=84.2

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc--Ccc
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA--FQK  270 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~--~~~  270 (365)
                      +++|+++|++.+++|||++|...  ...+.|.+|||++|+||++.+||+||++||||+++....+++........  ...
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHW   79 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeE
Confidence            57899999999899999998532  25789999999999999999999999999999999888887765433221  122


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK  306 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~  306 (365)
                      ..++|++..... .....+++|+.+++|++++++++
T Consensus        80 ~~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~~l~~  114 (125)
T cd04679          80 VAPVYLAENFSG-EPRLMEPDKLLELGWFALDALPQ  114 (125)
T ss_pred             EEEEEEEeecCC-ccccCCCccccEEEEeCHHHCCc
Confidence            344555554321 12223457899999999999976

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.80  E-value=5.9e-19  Score=153.42  Aligned_cols=116  Identities=20%  Similarity=0.291  Sum_probs=87.0

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeecc-c--
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHN-V--  266 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~~~-~--  266 (365)
                      +.++|+++|+|.+++|||+||...  +.+|.|.+|||+++.||++.+||+||++||||+++...  ++++...... .  
T Consensus        11 p~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~   88 (144)
T cd03430          11 PLVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNF   88 (144)
T ss_pred             CeEEEEEEEEeCCCeEEEEEccCC--CCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccc
Confidence            457899999999999999999643  36899999999999999999999999999999998766  6666543211 1  


Q ss_pred             ---cC--ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          267 ---AF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       267 ---~~--~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                         ..  ....++|.|...  .+.+...++|+.+++|++++++.++...+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~  136 (144)
T cd03430          89 FGDDFSTHYVVLGYVLKLS--SNELLLPDEQHSEYQWLTSDELLADDDVH  136 (144)
T ss_pred             ccCCCccEEEEEEEEEEEc--CCcccCCchhccEeEEecHHHHhcCCCcC
Confidence               11  122344555443  33444567899999999999999865444

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.80  E-value=3.3e-19  Score=154.97  Aligned_cols=126  Identities=25%  Similarity=0.294  Sum_probs=90.6

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcc--eeeEEEEEEee------
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT--EFVEVIAFRHA------  263 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~--~~~~ll~~~~~------  263 (365)
                      +.++|++++++.+++|||++|..    .++.|++|||++|+||++.+||+||++||||+++  ....++.....      
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   81 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF   81 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecC----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence            45789999999999999998853    3579999999999999999999999999999998  44333321100      


Q ss_pred             -------ccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817          264 -------HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  327 (365)
Q Consensus       264 -------~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l  327 (365)
                             .+........+|.+....   ...+..+|+.+++|++++++.++...+.   .+.+++.++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~E~~~~~W~~~~e~~~~~~~~~---~~~~l~~~~~~~  146 (148)
T PRK09438         82 PHWRHRYAPGVTRNTEHWFCLALPH---ERPVVLTEHLAYQWLDAREAAALTKSWS---NAEAIEQLVIRL  146 (148)
T ss_pred             hhhhhccccccCCceeEEEEEecCC---CCccccCcccceeeCCHHHHHHHhcChh---HHHHHHHHHHHh
Confidence                   111122344566665421   2223345999999999999999876664   467777776654

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.80  E-value=8.9e-19  Score=155.04  Aligned_cols=115  Identities=15%  Similarity=0.196  Sum_probs=84.2

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeecccc---
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVA---  267 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~~---  267 (365)
                      .++|+++|.+++++|||+||..+  +..|.|++|||+|++||++++||+||++||||+++..  ..+++........   
T Consensus        17 ~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~   94 (159)
T PRK15434         17 LISLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS   94 (159)
T ss_pred             eEEEEEEEECCCCEEEEEEccCC--CCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccC
Confidence            46888999988899999999743  3679999999999999999999999999999998743  3555543222111   


Q ss_pred             ---Cc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          268 ---FQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       268 ---~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                         +.  ...++|.+..  ..+++.++++|+.+++|++++++.+....+
T Consensus        95 ~~~~~~~~i~~~f~~~~--~~g~~~~~~~E~~~~~W~~~~el~~~~~~~  141 (159)
T PRK15434         95 GTDFTTHYVVLGFRLRV--AEEDLLLPDEQHDDYRWLTPDALLASDNVH  141 (159)
T ss_pred             CCccceEEEEEEEEEEe--cCCcccCChHHeeEEEEEeHHHhhhccccC
Confidence               11  2223444443  345566667799999999999998864443

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.80  E-value=2.6e-18  Score=155.46  Aligned_cols=153  Identities=16%  Similarity=0.137  Sum_probs=112.8

Q ss_pred             hcceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeCCCeEE
Q 017817          133 IHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVL  208 (365)
Q Consensus       133 ~~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VL  208 (365)
                      ..|+...++.|    |+++...+..+++..   ...|.+.     .       .    +    +..+|.++.+++++++|
T Consensus         6 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~G~---~~~~~~v-----~-------~----~----~~~~v~v~~~~~~~~vl   62 (185)
T PRK11762          6 QKPEILNRETVAKSRLFRVESVDLEFSNGV---ERVYERM-----R-------P----S----GRGAVMIVPILDDDTLL   62 (185)
T ss_pred             CCCEEeeEEEEEeCCEEEEEEEEEEcCCCC---EEEEEEE-----e-------c----C----CCCEEEEEEEeCCCEEE
Confidence            37999888888    999998888887732   1222221     0       0    0    11346677777888999


Q ss_pred             EEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccccC
Q 017817          209 VVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKV  288 (365)
Q Consensus       209 Lvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~  288 (365)
                      |+++ ++++...+.|+||||.+|+||++++||+||++||||+++..+..++.+...++......++|++..... .....
T Consensus        63 Lvrq-~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~-~~~~~  140 (185)
T PRK11762         63 LIRE-YAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYP-ERLEG  140 (185)
T ss_pred             EEEe-ecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEcccc-ccCCC
Confidence            9998 566678889999999999999999999999999999999999999877766665555555555543221 12234


Q ss_pred             CccceeeEEEEcccccccCCCC
Q 017817          289 DDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       289 ~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      ++.|..++.|+|++++.++...
T Consensus       141 ~e~E~i~~~~~~~~e~~~~~~~  162 (185)
T PRK11762        141 DEPEPLEVVRWPLADLDELLAR  162 (185)
T ss_pred             CCCceeEEEEEcHHHHHHHHHc
Confidence            5677789999999999876443

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.80  E-value=8e-19  Score=150.04  Aligned_cols=118  Identities=22%  Similarity=0.181  Sum_probs=88.3

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      ..+|+++++++++++||+++. +++..++.|.+|||++|.||++.+||+||++||||+.+.....++.............
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~-~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQY-RPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI   80 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEee-ecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence            457899999999999999874 3334678999999999999999999999999999999976666665443333222334


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      .+|++...........++.|+.+++|++++|+.++....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  119 (137)
T cd03424          81 HLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG  119 (137)
T ss_pred             EEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence            455555433222145567899999999999998865543

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.79  E-value=1.5e-18  Score=153.03  Aligned_cols=123  Identities=22%  Similarity=0.314  Sum_probs=91.7

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee--------
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA--------  263 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~--------  263 (365)
                      ++++|+++++|.+++|||+++..    .++.|.+|||++++||++.+||.||++||||+++....+++....        
T Consensus         7 ~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~   82 (156)
T PRK00714          7 YRPNVGIILLNRQGQVFWGRRIG----QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPK   82 (156)
T ss_pred             CCCeEEEEEEecCCEEEEEEEcC----CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcH
Confidence            45689999999999999999852    258999999999999999999999999999999887777664310        


Q ss_pred             ------ccccCccEEEEEEEEEecCCccccC---CccceeeEEEEcccccccCCCCcCCchHHH
Q 017817          264 ------HNVAFQKSDLFFICMLKPLSTEIKV---DDLEIKGAKWMPFMEFVKQPLIQGDCMFKK  318 (365)
Q Consensus       264 ------~~~~~~~~~~~f~~~l~~~~~~i~~---~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~  318 (365)
                            .+...+...++|++........+.+   +++|+.+++|++++|++++..+....++++
T Consensus        83 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~  146 (156)
T PRK00714         83 RLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRR  146 (156)
T ss_pred             HHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHH
Confidence                  1111233456788776543333333   346999999999999998766555333433

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.79  E-value=9.3e-19  Score=152.28  Aligned_cols=116  Identities=28%  Similarity=0.425  Sum_probs=87.1

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----ecc--
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----AHN--  265 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~-----~~~--  265 (365)
                      +++|+++++|++++|||++|...    ++.|.+|||++++||++.+||+||++||||+++....+++...     ..+  
T Consensus         3 ~~~v~~ii~~~~~~vLL~~r~~~----~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~   78 (147)
T cd03671           3 RPNVGVVLFNEDGKVFVGRRIDT----PGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPE   78 (147)
T ss_pred             CceEEEEEEeCCCEEEEEEEcCC----CCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhh
Confidence            46799999999999999999632    2899999999999999999999999999999987777766421     111  


Q ss_pred             ---c-----cCccEEEEEEEEEecCCccccCC---ccceeeEEEEcccccccCCCCcC
Q 017817          266 ---V-----AFQKSDLFFICMLKPLSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       266 ---~-----~~~~~~~~f~~~l~~~~~~i~~~---~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                         .     ..+...++|++........+.++   ++|+.+++|++++++.++..++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~  136 (147)
T cd03671          79 LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFK  136 (147)
T ss_pred             hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhh
Confidence               0     11233456666665423333333   57999999999999999876654

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.79  E-value=1.4e-18  Score=149.78  Aligned_cols=117  Identities=18%  Similarity=0.284  Sum_probs=80.8

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-E------eeccc-c
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-R------HAHNV-A  267 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-~------~~~~~-~  267 (365)
                      +.+.+++.+++|||+||...+...+|.|++|||++|+||++.+||+||++||||+++....+... +      ...+. .
T Consensus         6 ~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T PRK15472          6 IVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGR   85 (141)
T ss_pred             EEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCC
Confidence            44555666899999998765556789999999999999999999999999999998754433211 0      01111 1


Q ss_pred             CccE-EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817          268 FQKS-DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD  313 (365)
Q Consensus       268 ~~~~-~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~  313 (365)
                      .... .+++++........+.+ .+|+.+++|++++|+.++++.+.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l~~~~~~  131 (141)
T PRK15472         86 KEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHYDLNVAT  131 (141)
T ss_pred             ceeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccccccHHH
Confidence            1111 22233333333344443 578999999999999999887653

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.2e-18  Score=145.13  Aligned_cols=107  Identities=21%  Similarity=0.316  Sum_probs=82.4

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce-eeEEEEEEeeccccCccEEE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE-FVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~-~~~ll~~~~~~~~~~~~~~~  273 (365)
                      +|.++++++++++||+++..     .+.|.+|||++++||++++||+||++||||+.+. ....++..............
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~-----~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~   76 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTY-----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVI   76 (120)
T ss_pred             ceEEEEECCCCeEEEEEECC-----CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEE
Confidence            57889999999999999852     3389999999999999999999999999999998 77777765544333233334


Q ss_pred             EEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817          274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      +|.|..  .......+++|+.+++|++++++++..
T Consensus        77 ~f~~~~--~~~~~~~~~~E~~~~~w~~~~~l~~~~  109 (120)
T cd04680          77 VFRARA--DTQPVIRPSHEISEARFFPPDALPEPT  109 (120)
T ss_pred             EEEecc--cCCCccCCcccEEEEEEECHHHCcccC
Confidence            444443  333334567899999999999998843

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=4.1e-18  Score=145.49  Aligned_cols=123  Identities=20%  Similarity=0.289  Sum_probs=87.9

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      +.+++.++ +++||++|...+  ..+.|.+|||+++.||++.+||+||++||||+++....+++...............+
T Consensus         4 ~~~~i~~~-~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03427           4 TLCFIKDP-DKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF   80 (137)
T ss_pred             EEEEEEEC-CEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence            44555554 899999996443  689999999999999999999999999999999988888876654333212223333


Q ss_pred             EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      ++.......... ..+|..+++|++++++.++++.+.+   +.+++.+++
T Consensus        81 ~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~  126 (137)
T cd03427          81 VFLATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGD---REWLPLMLE  126 (137)
T ss_pred             EEEECCcccccC-CCCccccceEEcHhhcccccCCCCc---HHHHHHHhC
Confidence            333333333333 3556678999999999988777654   566666653

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.78  E-value=3.4e-18  Score=148.19  Aligned_cols=115  Identities=24%  Similarity=0.293  Sum_probs=85.1

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc-cCcc
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV-AFQK  270 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~-~~~~  270 (365)
                      ...+|+++|++.++++||++++..  +.++.|++|||++++||++++||+||++||||+++.....++.+..... ....
T Consensus        12 ~~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   89 (142)
T cd04700          12 EARAAGAVILNERNDVLLVQEKGG--PKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVLV   89 (142)
T ss_pred             eeeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcEE
Confidence            346799999998899999987533  3689999999999999999999999999999999988877765432211 1112


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      ..++|++........+. ..+|+.+++|++++++.++..
T Consensus        90 ~~~~f~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~~~~  127 (142)
T cd04700          90 LRHVWLAEPEGQTLAPK-FTDEIAEASFFSREDVAQLYA  127 (142)
T ss_pred             EEEEEEEEecCCccccC-CCCCEEEEEEECHHHhhhccc
Confidence            23455555532211222 347999999999999988754

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.78  E-value=2.8e-18  Score=144.04  Aligned_cols=114  Identities=23%  Similarity=0.330  Sum_probs=83.9

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---cc---C
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN---VA---F  268 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~---~~---~  268 (365)
                      +|.++++++ ++|||+++...+  .++.|.+|||++|+||++.+||+||++||||+++....+++......   ..   .
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   78 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA   78 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence            577888876 899999996432  67999999999999999999999999999999988877776543221   11   1


Q ss_pred             ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          269 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       269 ~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      ....++|.+.............+|..+++|++++++.+....+
T Consensus        79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~  121 (128)
T cd04684          79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSP  121 (128)
T ss_pred             cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCH
Confidence            2344556665542211113456788999999999998776555

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=4.3e-18  Score=144.09  Aligned_cols=113  Identities=28%  Similarity=0.409  Sum_probs=86.7

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--ccCcc
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAFQK  270 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~--~~~~~  270 (365)
                      +++|+++++|+++++||++|...  ...+.|.+|||++++||++.+||+||++||||+++.....++......  .....
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHY   79 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCC--CCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEE
Confidence            47899999999899999999643  368999999999999999999999999999999988877776544322  12224


Q ss_pred             EEEEEEEEEecCCcccc-CCccceeeEEEEcccccccC
Q 017817          271 SDLFFICMLKPLSTEIK-VDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~-~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ..++|.|.......... .+.+|+.+++|++++++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          80 VTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence            55666666643222222 14577889999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=2e-18  Score=145.50  Aligned_cols=120  Identities=23%  Similarity=0.364  Sum_probs=86.8

Q ss_pred             eEEEEEEEeCC---CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc----
Q 017817          194 VGVGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV----  266 (365)
Q Consensus       194 v~V~~vVin~~---g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~----  266 (365)
                      .++++++++.+   ++|||+++..     .+.|.+|||++++||++.+||.||++||||+++.....++.......    
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~-----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   76 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPR-----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGK   76 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCC-----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCC
Confidence            45778888865   8999999852     37999999999999999999999999999999988777765433222    


Q ss_pred             cCccEEEEEEEEEecCCccccC-CccceeeEEEEcccccccCCCCcCCchHHHHHHHH
Q 017817          267 AFQKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  323 (365)
Q Consensus       267 ~~~~~~~~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~  323 (365)
                      .......+|.+...  ...... +++|+.+++|++++++.++...+.   .+.+++.+
T Consensus        77 ~~~~~~~~~~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~  129 (131)
T cd03673          77 RVHKTVHWWLMRAL--GGEFTPQPDEEVDEVRWLPPDEARDRLSYPN---DRELLRAA  129 (131)
T ss_pred             CcceEEEEEEEEEc--CCCcccCCCCcEEEEEEcCHHHHHHHcCCHh---HHHHHHHh
Confidence            22233444554443  333333 578899999999999988655442   35555554

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=3.6e-18  Score=147.06  Aligned_cols=121  Identities=23%  Similarity=0.472  Sum_probs=85.2

Q ss_pred             eEEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-----Eeecccc
Q 017817          194 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-----RHAHNVA  267 (365)
Q Consensus       194 v~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-----~~~~~~~  267 (365)
                      .+|+++++|++ ++|||++|+     ..+.|.+|||++|+||++++||+||++||||+++......+.     ....+..
T Consensus         3 ~~~~~~v~~~~~~~vLLv~r~-----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   77 (138)
T cd03674           3 FTASAFVVNPDRGKVLLTHHR-----KLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH   77 (138)
T ss_pred             EEEEEEEEeCCCCeEEEEEEc-----CCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence            35788889887 999999985     257899999999999999999999999999998765554321     1111111


Q ss_pred             -----Ccc--EEEEEEEEEecCCcccc-CCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817          268 -----FQK--SDLFFICMLKPLSTEIK-VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  324 (365)
Q Consensus       268 -----~~~--~~~~f~~~l~~~~~~i~-~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l  324 (365)
                           ...  ..+.|+|...  .+... .+++|+.+++|++++++.++++...   .++++..++
T Consensus        78 ~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~i~~~~  137 (138)
T cd03674          78 PKRGVPGHLHLDLRFLAVAP--ADDVAPPKSDESDAVRWFPLDELASLELPED---VRRLVEKAL  137 (138)
T ss_pred             CCCCCCCcEEEEEEEEEEcc--CccccCCCCCcccccEEEcHHHhhhccCCHH---HHHHHHHHh
Confidence                 111  2334555543  23333 2567999999999999987766553   366666654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=4e-18  Score=142.12  Aligned_cols=115  Identities=26%  Similarity=0.419  Sum_probs=83.0

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc----Cc
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ  269 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~----~~  269 (365)
                      ++|+++++++ +++||++|...  .+++.|.+|||++++||++++||+||++||||+++.....++........    ..
T Consensus         1 ~~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   77 (122)
T cd04673           1 VAVGAVVFRG-GRVLLVRRANP--PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVE   77 (122)
T ss_pred             CcEEEEEEEC-CEEEEEEEcCC--CCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccc
Confidence            3577788875 79999998632  36789999999999999999999999999999998777777654433211    11


Q ss_pred             cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                      ....++.+.......+. ...+|+.+++|++++++.++++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~  119 (122)
T cd04673          78 FHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALSLTES  119 (122)
T ss_pred             eEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence            12222222223333333 3457889999999999999887664

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.77  E-value=3.7e-18  Score=143.63  Aligned_cols=120  Identities=31%  Similarity=0.475  Sum_probs=92.2

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC---c
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF---Q  269 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~---~  269 (365)
                      +++|++++++.++++||+++...+...++.|.+|||++++||++.+||+||+.||||+++.....+..........   +
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T PF00293_consen    2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG   81 (134)
T ss_dssp             EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred             CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence            4679999999999999999975443467999999999999999999999999999999986666665443322222   2


Q ss_pred             cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                      ....+|.+...........+..|+.+++|++++++.++.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  124 (134)
T PF00293_consen   82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGR  124 (134)
T ss_dssp             EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTH
T ss_pred             EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcc
Confidence            4556666666544434555556999999999999999876653

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3.7e-18  Score=143.98  Aligned_cols=114  Identities=24%  Similarity=0.361  Sum_probs=82.2

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--ccCc-c
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAFQ-K  270 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~--~~~~-~  270 (365)
                      ++|+++|+|.++++||+|+..    +.+.|.+|||++++||++.+||+||++||||+++....++.......  .... .
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   78 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA   78 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence            568899999889999998742    46899999999999999999999999999999988777665432211  1111 1


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                      ..+++.+........+. ..+|+.+++|++++++.++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~  119 (125)
T cd04696          79 HFVLFDFFARTDGTEVT-PNEEIVEWEWVTPEEALDYPLNSF  119 (125)
T ss_pred             EEEEEEEEEEecCCccc-CCcccceeEEECHHHHhcCCCCHH
Confidence            22222222222223343 346899999999999999887663

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.77  E-value=1.9e-18  Score=150.57  Aligned_cols=129  Identities=21%  Similarity=0.253  Sum_probs=84.8

Q ss_pred             EEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          195 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       195 ~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      .+++++++++ ++|||+|+.     ..+.|+||||++|+||++.+||+||++||||+++........+. .....+....
T Consensus         3 ~~gaii~~~~~~~vLLvr~~-----~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~-~~~~~~~~~~   76 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGW-----KSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYI-ELIIRGQNVK   76 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEec-----CCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceee-ecccCCcEEE
Confidence            4788888865 799999984     23489999999999999999999999999999986532111111 1111222334


Q ss_pred             EEEEEEecCCccccC-CccceeeEEEEcccccccCCCCc-------CCchHHHHHHHHHHHHhc
Q 017817          274 FFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQ-------GDCMFKKVIDICIARLRK  329 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~-------~~~~~~~il~~~l~~lr~  329 (365)
                      +|++..........+ +.+|+.+++|++++++.++....       .-.+++.++....+++++
T Consensus        77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (145)
T cd03672          77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWINR  140 (145)
T ss_pred             EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHHHH
Confidence            444433222222222 35789999999999999875443       223455566666655543

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>PLN02325 nudix hydrolase

Probab=99.77  E-value=3.6e-18  Score=148.62  Aligned_cols=117  Identities=23%  Similarity=0.338  Sum_probs=85.5

Q ss_pred             CCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--
Q 017817          188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--  265 (365)
Q Consensus       188 ~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~--  265 (365)
                      .+++.+++|+++++++ ++|||+||...  .+.+.|.+|||+++.||++.+||+||++||||+++....+++......  
T Consensus         4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~--~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~   80 (144)
T PLN02325          4 GEPIPRVAVVVFLLKG-NSVLLGRRRSS--IGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE   80 (144)
T ss_pred             CCCCCeEEEEEEEEcC-CEEEEEEecCC--CCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence            4566778898888875 79999998643  256899999999999999999999999999999999888887643321  


Q ss_pred             --ccCccEEEEEEEEEecCCc-cccCCccceeeEEEEcccccccC
Q 017817          266 --VAFQKSDLFFICMLKPLST-EIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       266 --~~~~~~~~~f~~~l~~~~~-~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                        .......++|.+....... ....+.+|..+++|+++++++..
T Consensus        81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~  125 (144)
T PLN02325         81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP  125 (144)
T ss_pred             CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence              1122344555555432211 12234456788999999999874

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=2.8e-18  Score=144.21  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=79.1

Q ss_pred             EEEEEEeCCCeEEEEeeecC-CCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYC-NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF  274 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~-~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~  274 (365)
                      |+++++.++++|||++|... ...++|.|.+|||+++.||++++||+||++||||++++...+................+
T Consensus         3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   82 (122)
T cd04682           3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHV   82 (122)
T ss_pred             eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEE
Confidence            33444444599999998654 34578999999999999999999999999999999986433322221111122334455


Q ss_pred             EEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817          275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      |.+...... ....+.+|+.+++|++++|+.+....
T Consensus        83 f~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~  117 (122)
T cd04682          83 FVVPLTARE-DAILFGDEGQALRLMTVEEFLAHEDA  117 (122)
T ss_pred             EEEEEecCC-CccccCchhheeecccHHHHhhcccc
Confidence            555543222 24456789999999999999776543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=9e-18  Score=140.56  Aligned_cols=113  Identities=30%  Similarity=0.461  Sum_probs=83.2

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee--c--cccC
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA--H--NVAF  268 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~--~--~~~~  268 (365)
                      +++|.++++|+++++||++|.     ..+.|.+|||++++||++++||+||++||||+++....+++....  +  ....
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~-----~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   76 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRS-----DNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPN   76 (129)
T ss_pred             cceEEEEEECCCCeEEEEEec-----CCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCC
Confidence            356888888988999999985     238999999999999999999999999999999877776543211  1  1111


Q ss_pred             ----ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          269 ----QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       269 ----~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                          ....++|.+...  +.....+.+|..+++|++++++.++.++..
T Consensus        77 ~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~el~~~~~~~~  122 (129)
T cd04676          77 GDVRQYLDITFRCRVV--GGELRVGDDESLDVAWFDPDGLPPLLMHPS  122 (129)
T ss_pred             CCcEEEEEEEEEEEee--CCeecCCCCceeEEEEEChhhCccccCCHh
Confidence                123344444443  233334567889999999999999877664

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=6.9e-18  Score=142.84  Aligned_cols=108  Identities=26%  Similarity=0.437  Sum_probs=81.3

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc--cC--cc
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AF--QK  270 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~--~~--~~  270 (365)
                      +|++++++.++++||++|...+  .++.|.+|||+++.||++.+||.||++||||+++.....++.......  ..  ..
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   80 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREP--GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDT   80 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCC--CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEE
Confidence            5778889988999999986432  578999999999999999999999999999999987777764422111  11  12


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK  306 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~  306 (365)
                      ..++|+|...  ......+.+|+.+++|++++++..
T Consensus        81 ~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~  114 (130)
T cd04681          81 LDLFFVCQVD--DKPIVKAPDDVAELKWVVPQDIEL  114 (130)
T ss_pred             EEEEEEEEeC--CCCCcCChHHhheeEEecHHHCCc
Confidence            3346666653  233344567999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=5.9e-18  Score=143.30  Aligned_cols=113  Identities=25%  Similarity=0.369  Sum_probs=82.4

Q ss_pred             cceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-c---
Q 017817          191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-V---  266 (365)
Q Consensus       191 ~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~-~---  266 (365)
                      .+.++|++++++.++++||++|.     ..+.|.+|||++++||++.+||+||++||||+++.....++.+.... .   
T Consensus         5 ~~~~~~~~~v~~~~~~vLL~~r~-----~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04677           5 LILVGAGVILLNEQGEVLLQKRS-----DTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKP   79 (132)
T ss_pred             ccccceEEEEEeCCCCEEEEEec-----CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecC
Confidence            34577889999988999999885     23789999999999999999999999999999998877775432110 0   


Q ss_pred             cCc----cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817          267 AFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       267 ~~~----~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      ..+    ...+++++..  ....+..+.+|+.+++|++++++.++...
T Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~~  125 (132)
T cd04677          80 NGDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELINP  125 (132)
T ss_pred             CCCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchhH
Confidence            011    1223333332  23334456788999999999999876443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1e-17  Score=139.87  Aligned_cols=112  Identities=23%  Similarity=0.376  Sum_probs=80.0

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeecccc-CccE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNVA-FQKS  271 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~--~~~ll~~~~~~~~~-~~~~  271 (365)
                      +|.+++++ +++|||++|... ...++.|.+|||++++||++.+||+||++||||+++.  ...+++..+..... ....
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~-~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~   79 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANT-GYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRI   79 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCC-CCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEE
Confidence            46666665 589999998533 3358999999999999999999999999999999986  44555554433322 2334


Q ss_pred             EEEEEEEEecCCccc-cCCccceeeEEEEcccccccCCCC
Q 017817          272 DLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i-~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      .++|.+...  .+.. ..+++|+.+++|+++++++....+
T Consensus        80 ~~~f~~~~~--~~~~~~~~~~e~~~~~W~~~~~l~~~~~~  117 (120)
T cd04683          80 GLFFTVRRW--SGEPRNCEPDKCAELRWFPLDALPDDTVD  117 (120)
T ss_pred             EEEEEEEee--cCccccCCCCcEeeEEEEchHHCcchhcc
Confidence            455655542  2222 234578899999999999875443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.2e-17  Score=140.54  Aligned_cols=107  Identities=21%  Similarity=0.331  Sum_probs=81.6

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      |++++++++++|||++|...   ..+.|.+|||+++.||++.+||+||++||||+++....+++....    .+...++|
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f   75 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYF   75 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEE
Confidence            66788888799999998532   358999999999999999999999999999999977777665443    12345677


Q ss_pred             EEEEecCCccccC---------CccceeeEEEEcccccccCCCCc
Q 017817          276 ICMLKPLSTEIKV---------DDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       276 ~~~l~~~~~~i~~---------~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      .|....  +.+..         ++++..+++|+++++++.+++.+
T Consensus        76 ~~~~~~--g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p  118 (121)
T cd04669          76 LARVIS--GKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP  118 (121)
T ss_pred             EEEEEC--CeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence            776532  11111         13456789999999999988766

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.1e-17  Score=139.10  Aligned_cols=110  Identities=29%  Similarity=0.509  Sum_probs=83.8

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-----
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-----  267 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~-----  267 (365)
                      .++|.++|+++ +++||++++     ..+.|.+|||++++||++.+||+||++||||+.+....+++........     
T Consensus         2 ~~~v~~~i~~~-~~vLL~~~~-----~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~   75 (123)
T cd04672           2 KVDVRAAIFKD-GKILLVREK-----SDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQP   75 (123)
T ss_pred             cceEEEEEEEC-CEEEEEEEc-----CCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCc
Confidence            46788888876 899999985     2689999999999999999999999999999999777777765432211     


Q ss_pred             CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      .....++|.|...  ...+... +|+.+++|++++++.++.+..
T Consensus        76 ~~~~~~~f~~~~~--~~~~~~~-~E~~~~~W~~~~el~~l~~~~  116 (123)
T cd04672          76 YQVYKLFFLCEIL--GGEFKPN-IETSEVGFFALDDLPPLSEKR  116 (123)
T ss_pred             eEEEEEEEEEEec--CCcccCC-CceeeeEEECHHHCcccccCC
Confidence            1123445566553  2334433 789999999999999887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.75  E-value=7.6e-18  Score=148.45  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=86.7

Q ss_pred             EEEEEEEeCC--CeEEEEeeecCCCCCCCceEeceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          195 GVGGFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       195 ~V~~vVin~~--g~VLLvrr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      +|.+++.+.+  ++|||+||......++|.|++|||++|+| |++.+||+||++||||+++....+++.........+..
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~   83 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV   83 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence            4556666654  68999999755445789999999999999 99999999999999999998888877654433333444


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      ...|++..... ..+.++++|+.+++|++++++.+...
T Consensus        84 v~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~  120 (157)
T cd03426          84 VTPVVGLVPPP-LPLVLNPDEVAEVFEVPLSFLLDPAN  120 (157)
T ss_pred             EEEEEEEECCC-CCCCCCHHHhheeEEEcHHHHhCcCC
Confidence            45555655332 34556677999999999999988643

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=7.7e-18  Score=142.69  Aligned_cols=112  Identities=19%  Similarity=0.333  Sum_probs=84.6

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      ++.++++|.+++|||++|...+...+|.|++ |||++++||++.+||+||++||||+.+.....++.+............
T Consensus         2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~   81 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK   81 (126)
T ss_pred             eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence            4778899999999999886555457899999 699999999999999999999999999866666654433322222233


Q ss_pred             EEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817          274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      +|.+..   ...+.++++|+.+++|++++++.++..
T Consensus        82 ~f~~~~---~~~~~~~~~E~~~~~w~~~~el~~~~~  114 (126)
T cd04697          82 VFSCVY---DGPLKLQEEEVEEITWLSINEILQFKE  114 (126)
T ss_pred             EEEEEE---CCCCCCCHhHhhheEEcCHHHHHHHhh
Confidence            444443   234556678999999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.75  E-value=2.9e-17  Score=139.86  Aligned_cols=126  Identities=21%  Similarity=0.227  Sum_probs=85.7

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc--cEE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--KSD  272 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~--~~~  272 (365)
                      +|++++. .++++||++|...   ..+.|.+|||++++||++.+||.||++||||+++....+++.........+  ...
T Consensus         2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   77 (134)
T cd03675           2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLR   77 (134)
T ss_pred             eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEE
Confidence            4555554 5689999998533   568999999999999999999999999999999987777765433222112  223


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      ++|.+..... ......++|+.++.|++++++.++..........+.+..++.
T Consensus        78 ~~f~~~~~~~-~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~  129 (134)
T cd03675          78 FAFAAELLEH-LPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLA  129 (134)
T ss_pred             EEEEEEECCC-CCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHh
Confidence            3455554322 111133568999999999999988632222244555665553

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.1e-17  Score=138.34  Aligned_cols=107  Identities=23%  Similarity=0.307  Sum_probs=77.0

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      |+++++++ ++|||++|...+...++.|.+|||++++||++++||+||++||||+++.....+........ ......+|
T Consensus         3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~   80 (117)
T cd04691           3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY   80 (117)
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence            44556654 89999998543334789999999999999999999999999999999765565554433222 22333445


Q ss_pred             EEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      .+...  .+.+  ..+|+.+++|+++++++.++
T Consensus        81 ~~~~~--~~~~--~~~E~~~~~W~~~~~l~~~~  109 (117)
T cd04691          81 VVTFW--QGEI--PAQEAAEVHWMTANDIVLAS  109 (117)
T ss_pred             EEEEe--cCCC--CcccccccEEcCHHHcchhh
Confidence            55432  2333  34789999999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.2e-17  Score=140.37  Aligned_cols=114  Identities=24%  Similarity=0.314  Sum_probs=81.0

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC--ccE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF--QKS  271 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~--~~~  271 (365)
                      ++|+++|.++++++||++|...+...+|.|++|||++++||++.+||+||++||||+++....++.....+....  ...
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI   81 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence            467788888879999999865443468999999999999999999999999999999987766643322332221  222


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      .++|.+..  ... ...+++|..+++|++++++..+.++
T Consensus        82 ~~~~~~~~--~~~-~~~~~~e~~~~~w~~~~el~~~~~~  117 (129)
T cd04699          82 YLVFVCEA--LSG-AVKLSDEHEEYAWVTLEELAILKAD  117 (129)
T ss_pred             EEEEEeee--cCC-cccCChhheEEEEecHHHhhhhhcc
Confidence            23333322  222 2234568889999999998665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.74  E-value=6.4e-17  Score=137.76  Aligned_cols=123  Identities=20%  Similarity=0.287  Sum_probs=86.5

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      +.+++++.+++|||+||... ..+.|.|.+|||++++||++.+||+||++||||+++....+++..............+|
T Consensus         6 ~~~~ii~~~~~vLL~~R~~~-~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
T PRK10546          6 VVAAIIERDGKILLAQRPAH-SDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW   84 (135)
T ss_pred             EEEEEEecCCEEEEEEccCC-CCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence            44455567789999998533 34789999999999999999999999999999999877666654433333322222333


Q ss_pred             EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  326 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~  326 (365)
                      .+...  .+++  ...|..+++|++++++.+++++...   +.+++.+++.
T Consensus        85 ~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~  128 (135)
T PRK10546         85 HVPDF--HGEL--QAHEHQALVWCTPEEALRYPLAPAD---IPLLEAFMAL  128 (135)
T ss_pred             EEEEe--cCcc--cccccceeEEcCHHHcccCCCCcCc---HHHHHHHHHh
Confidence            33322  1222  2346778999999999999887765   5666666554

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=4e-17  Score=138.21  Aligned_cols=108  Identities=30%  Similarity=0.453  Sum_probs=80.2

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      |++++++.+++|||+++...+  .++.|.+|||++|.||++.+||+||++||||+++....+++.....   .....++|
T Consensus         3 ~~~vv~~~~~~vLl~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~f   77 (123)
T cd04671           3 VAAVILNNQGEVLLIQEAKRS--CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFVF   77 (123)
T ss_pred             EEEEEEcCCCEEEEEEecCCC--CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEEE
Confidence            678888889999999985332  5789999999999999999999999999999999888777654321   22334455


Q ss_pred             EEEEecCCccccC---CccceeeEEEEcccccccCCCCc
Q 017817          276 ICMLKPLSTEIKV---DDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       276 ~~~l~~~~~~i~~---~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      .|....  +.+..   ++.|+.+++|++++++ .+++.+
T Consensus        78 ~a~~~~--g~~~~~~~~~~e~~~~~W~~~~el-~~~~~~  113 (123)
T cd04671          78 TGNITG--GDLKTEKEADSESLQARWYSNKDL-PLPLRA  113 (123)
T ss_pred             EEEEeC--CeEccCCCCCcceEEEEEECHHHC-CCccch
Confidence            555432  22221   3467889999999999 344433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.73  E-value=4.2e-17  Score=142.24  Aligned_cols=116  Identities=28%  Similarity=0.489  Sum_probs=83.5

Q ss_pred             CcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-C
Q 017817          190 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-F  268 (365)
Q Consensus       190 ~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~-~  268 (365)
                      ..+.++|++++...+ +|||++|+..+  ..|.|.+|||++|.||++++||+||++||||+++...++++.+...... .
T Consensus         7 ~~p~~~v~~~i~~~~-~iLLvrR~~~p--~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r   83 (145)
T COG1051           7 RTPLVAVGALIVRNG-RILLVRRANEP--GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPR   83 (145)
T ss_pred             CCcceeeeEEEEeCC-EEEEEEecCCC--CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCc
Confidence            344577877777554 99999996443  6899999999999999999999999999999999999999887665432 2


Q ss_pred             ccEEEEEEEEEecCCccccC-CccceeeEEEEcccccccCCC
Q 017817          269 QKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       269 ~~~~~~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      +....+++..... .++... +.++...+.|+++++++.+..
T Consensus        84 ~~~v~~~~~~~~~-~g~~~~~~~~d~~~~~~~~~~~l~~~~~  124 (145)
T COG1051          84 GHHVSFLFFAAEP-EGELLAGDGDDAAEVGWFPLDELPELPL  124 (145)
T ss_pred             eeEEEEEEEEEec-CCCcccCChhhHhhcceecHhHcccccc
Confidence            2222222222221 232322 334778899999999998544

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=5.4e-17  Score=137.39  Aligned_cols=114  Identities=25%  Similarity=0.404  Sum_probs=79.4

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--------
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--------  265 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~--------  265 (365)
                      ++|+++|++ +++|||+++.. +  ..+.|.+|||++++||++++||+||++||||+++....++.......        
T Consensus         2 ~~a~~iv~~-~~~vLl~~r~~-~--~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~   77 (128)
T cd04687           2 NSAKAVIIK-NDKILLIKHHD-D--GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELP   77 (128)
T ss_pred             cEEEEEEEE-CCEEEEEEEEc-C--CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCC
Confidence            457777776 57999999852 2  35789999999999999999999999999999987666554432221        


Q ss_pred             ccCccEEEEEEEEEecCCc-ccc-CCccceeeEEEEcccccccCCCCc
Q 017817          266 VAFQKSDLFFICMLKPLST-EIK-VDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       266 ~~~~~~~~~f~~~l~~~~~-~i~-~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      .......++|.|....... ... ..+.|..+++|++++++.++++.+
T Consensus        78 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p  125 (128)
T cd04687          78 GHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP  125 (128)
T ss_pred             CceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence            1122334556565532211 111 123456789999999999987765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=6.7e-17  Score=136.34  Aligned_cols=110  Identities=18%  Similarity=0.311  Sum_probs=80.7

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc----ccCcc
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN----VAFQK  270 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~----~~~~~  270 (365)
                      .|.++++++ ++|||+++.     ..+.|.+|||++++||++.+||+||++||||+++.....++......    .....
T Consensus         3 ~v~~vi~~~-~~vLl~~~~-----~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T cd04688           3 RAAAIIIHN-GKLLVQKNP-----DETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHE   76 (126)
T ss_pred             EEEEEEEEC-CEEEEEEeC-----CCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEE
Confidence            356666654 499999875     26799999999999999999999999999999998888776543211    11223


Q ss_pred             EEEEEEEEEecCCcccc-------CCccceeeEEEEcccccccCCCCcC
Q 017817          271 SDLFFICMLKPLSTEIK-------VDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~-------~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                      ..++|.|...  .....       .+++|+.+++|++++++..+++.+.
T Consensus        77 ~~~~f~~~~~--~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p~  123 (126)
T cd04688          77 IEFYYLVTLL--DESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPE  123 (126)
T ss_pred             EEEEEEEEeC--CCcccccccceeccCCCEEEEEEeeHHHcccCccCCc
Confidence            3456666553  22222       2457899999999999998877653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.73  E-value=5.4e-17  Score=154.10  Aligned_cols=131  Identities=22%  Similarity=0.297  Sum_probs=96.5

Q ss_pred             CCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 017817          184 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA  263 (365)
Q Consensus       184 ~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~  263 (365)
                      |....|+.+.++|.++|. +++++||+++.. .  ..+.|.+|||++|+||++++||+||++||||+++..+.+++....
T Consensus       123 c~~~~yp~~~paViv~V~-~~~~iLL~rr~~-~--~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~  198 (256)
T PRK00241        123 CRERYYPRIAPCIIVAVR-RGDEILLARHPR-H--RNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPW  198 (256)
T ss_pred             CCCEECCCCCCEEEEEEE-eCCEEEEEEccC-C--CCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEee
Confidence            445566667777655554 558999999853 2  278999999999999999999999999999999988887765322


Q ss_pred             ccccCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          264 HNVAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       264 ~~~~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                         .+. ...+.|.+..  .++++.++++|+.+++|++++|++.++.  ...+.+++|+.+++
T Consensus       199 ---~~p~~lm~~f~a~~--~~~~~~~~~~Ei~~a~W~~~del~~lp~--~~sia~~li~~~~~  254 (256)
T PRK00241        199 ---PFPHSLMLGFHADY--DSGEIVFDPKEIADAQWFRYDELPLLPP--SGTIARRLIEDTVA  254 (256)
T ss_pred             ---cCCCeEEEEEEEEe--cCCcccCCcccEEEEEEECHHHCcccCC--chHHHHHHHHHHHH
Confidence               222 2334555554  3455677778999999999999987654  33477777777654

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.73  E-value=5.3e-17  Score=146.46  Aligned_cols=130  Identities=16%  Similarity=0.212  Sum_probs=89.3

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      .++.++|+|++++|||++|...+...+|.|. +|||++++||++.+||+||++||||+.+.....++.+...........
T Consensus        38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~  117 (180)
T PRK15393         38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWG  117 (180)
T ss_pred             EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEE
Confidence            4567888999999999888644444567775 799999999999999999999999998765555554333222222223


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCC--CCcCCchHHHHHHHHHHHHhc
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP--LIQGDCMFKKVIDICIARLRK  329 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~--~~~~~~~~~~il~~~l~~lr~  329 (365)
                      .+|.+..   .....++++|+.+++|++++++.++.  +.+.  . ...+..++.+.++
T Consensus       118 ~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~--~-~~~l~~~l~~~~~  170 (180)
T PRK15393        118 ALFSCVS---HGPFALQEEEVSEVCWMTPEEITARCDEFTPD--S-LKALALWLTRNAK  170 (180)
T ss_pred             EEEEEEe---CCCCCCChHHeeEEEECCHHHHhhhhhhcCcc--H-HHHHHHHHHhhcc
Confidence            3444433   24455677899999999999999873  4332  2 3445555555443

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.72  E-value=1.2e-16  Score=146.67  Aligned_cols=115  Identities=15%  Similarity=0.079  Sum_probs=89.9

Q ss_pred             EEEEEEEeC-CCeEEEEeeecCCCCC-----CCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC
Q 017817          195 GVGGFVIND-NNEVLVVQEKYCNPAF-----AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF  268 (365)
Q Consensus       195 ~V~~vVin~-~g~VLLvrr~~~~~~~-----~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~  268 (365)
                      +|+++++++ +++|+|+++ ++++..     +..|++|+|.+|+||++++||+||+.||||+.+..+..+..+...++..
T Consensus        51 ~V~il~~~~~~~~vlLvrQ-yR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~  129 (202)
T PRK10729         51 AAVLLPFDPVRDEVVLIEQ-IRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGT  129 (202)
T ss_pred             eEEEEEEECCCCEEEEEEe-eecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcC
Confidence            477777876 479999998 677653     3689999999999999999999999999999998888887777777766


Q ss_pred             ccEEEEEEEEEec---CCccccCCccceeeEEEEcccccccCCCC
Q 017817          269 QKSDLFFICMLKP---LSTEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       269 ~~~~~~f~~~l~~---~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      ....++|++....   .......+++|..++.|+|++++.++...
T Consensus       130 ~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~  174 (202)
T PRK10729        130 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE  174 (202)
T ss_pred             ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHc
Confidence            6666777766421   11112346678889999999999887543

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.72  E-value=4.3e-17  Score=139.29  Aligned_cols=106  Identities=26%  Similarity=0.361  Sum_probs=80.4

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF  274 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~  274 (365)
                      +|.+++.++++++||++|.. .  ..+.|.+|||+++.||++++||+||++||||+++.....++..... . .....++
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~-~--~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~-~-~~~~~~~   76 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPR-F--PPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWP-F-PSSLMLG   76 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecC-C--CCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCC-C-CceEEEE
Confidence            36667777779999999853 2  2689999999999999999999999999999999877776643221 1 1233455


Q ss_pred             EEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      |++...  ...+..+++|+.+++|++++++.++
T Consensus        77 f~~~~~--~~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          77 FTAEAD--SGEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEEEc--CCcccCCchhhhccEeecHHHHhhc
Confidence            555543  3455566789999999999998874

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=2e-17  Score=139.85  Aligned_cols=111  Identities=21%  Similarity=0.286  Sum_probs=78.8

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeEE--EEEEeeccccCccE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEV--IAFRHAHNVAFQKS  271 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~l--l~~~~~~~~~~~~~  271 (365)
                      .|.+++++++++|||++|...+...+|.|++| ||++++||++ +||+||++||||+++....+  +..+.....  +..
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~--~~~   78 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE--GFD   78 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC--CeE
Confidence            36788899999999999875554578999998 8999999999 99999999999999764332  332222111  222


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      ..++ +........+.++.+|+.+++|++++++.++..
T Consensus        79 ~~~~-~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  115 (127)
T cd04693          79 DYYL-FYADVEIGKLILQKEEVDEVKFVSKDEIDGLIG  115 (127)
T ss_pred             EEEE-EEecCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence            2222 222222344555678999999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.72  E-value=1.9e-16  Score=132.85  Aligned_cols=120  Identities=18%  Similarity=0.287  Sum_probs=84.2

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      +.++++++++++||+||... +.++|.|+||||++++||++.+||+||++||||+++.....++..............+|
T Consensus         7 ~~~ii~~~~~~vll~rR~~~-~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
T PRK10776          7 AVGIIRNPNNEIFITRRAAD-AHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFW   85 (129)
T ss_pred             EEEEEECCCCEEEEEEecCC-CCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEE
Confidence            44566777889999998644 34789999999999999999999999999999998766555554433332222223334


Q ss_pred             EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHH
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  323 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~  323 (365)
                      .+...  ...  +...|..+++|++++++...+++...   +++++.+
T Consensus        86 ~~~~~--~~~--~~~~e~~~~~W~~~~~l~~~~~p~~~---~~~~~~~  126 (129)
T PRK10776         86 LVESW--EGE--PWGKEGQPGRWVSQVALNADEFPPAN---EPIIAKL  126 (129)
T ss_pred             EEEEE--CCc--cCCccCCccEEecHHHCccCCCCccc---HHHHHHH
Confidence            44322  122  22456778899999999998877654   5555544

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.1e-16  Score=133.08  Aligned_cols=107  Identities=21%  Similarity=0.363  Sum_probs=78.6

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeecccc-C--cc
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVA-F--QK  270 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~~-~--~~  270 (365)
                      +++++++.++++||++++     ..+.|.+|||++++||++++||+||++||||+++..  ...++.+...... .  ..
T Consensus         3 ~~~~v~~~~~~vLl~~r~-----~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   77 (118)
T cd04690           3 AAALILVRDGRVLLVRKR-----GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV   77 (118)
T ss_pred             EEEEEEecCCeEEEEEEC-----CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEE
Confidence            556777788899999885     357899999999999999999999999999999877  7777655432211 1  12


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      ...+|.+...  . .+. ..+|+.+++|++++++....+.+
T Consensus        78 ~~~~f~~~~~--~-~~~-~~~e~~~~~W~~~~e~~~~~~~~  114 (118)
T cd04690          78 RATVYVAELT--G-EPV-PAAEIEEIRWVDYDDPADDRLAP  114 (118)
T ss_pred             EEEEEEEccc--C-CcC-CCchhhccEEecHHHccccccCc
Confidence            3344444432  2 333 35688999999999997766654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=7e-17  Score=136.77  Aligned_cols=112  Identities=25%  Similarity=0.284  Sum_probs=82.4

Q ss_pred             EEEEEEEeC--CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----cccc-
Q 017817          195 GVGGFVIND--NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA----HNVA-  267 (365)
Q Consensus       195 ~V~~vVin~--~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~----~~~~-  267 (365)
                      .|.+++++.  +++|||++|...   .++.|.+|||+++.||++.+||+||++||||+.+.....+.....    .... 
T Consensus         3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T cd04664           3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN   79 (129)
T ss_pred             EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC
Confidence            467888887  899999999643   589999999999999999999999999999999876666654331    1111 


Q ss_pred             -CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          268 -FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       268 -~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                       ......+|++.+..  ......++|+.+++|++++++.++...+
T Consensus        80 ~~~~~~~~f~~~~~~--~~~~~~~~E~~~~~W~~~~e~~~~~~~~  122 (129)
T cd04664          80 GRVWTEHPFAFHLPS--DAVVTLDWEHDAFEWVPPEEAAALLLWE  122 (129)
T ss_pred             ceEEEEeEEEEEcCC--CCcccCCccccccEecCHHHHHHHHcCh
Confidence             11234555555432  2222345788999999999998876554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.5e-16  Score=134.02  Aligned_cols=107  Identities=18%  Similarity=0.200  Sum_probs=75.9

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc----Cc
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ  269 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~----~~  269 (365)
                      +.|.++++ .++++||+++.     ..+.|.+|||++|+||++.+||+||++||||+++....+++........    ..
T Consensus         2 ~~~~~vi~-~~~~vLlv~~~-----~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~   75 (125)
T cd04689           2 LRARAIVR-AGNKVLLARVI-----GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTH   75 (125)
T ss_pred             eEEEEEEE-eCCEEEEEEec-----CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEE
Confidence            35667777 46799999985     3578999999999999999999999999999999888877654432211    11


Q ss_pred             cEEEEEEEEEecCCcc-ccCCccceeeEEEEccccccc
Q 017817          270 KSDLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEFVK  306 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~-i~~~~~Ei~~~~Wv~leEl~~  306 (365)
                      ...++|.+........ ....++|+.+++|++++++..
T Consensus        76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  113 (125)
T cd04689          76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSL  113 (125)
T ss_pred             EEEEEEEEEcccccccCCccCccceEEEEEccHHHccc
Confidence            2234555544321111 122356789999999999754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=2.3e-16  Score=134.21  Aligned_cols=110  Identities=22%  Similarity=0.296  Sum_probs=82.3

Q ss_pred             CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC
Q 017817          189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF  268 (365)
Q Consensus       189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~  268 (365)
                      ++.+.++|+++++++ ++|||++|...+  ..+.|.+|||++|+||++++||+||++||||+++....+++.+... . .
T Consensus         9 ~~~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~-~-~   83 (130)
T cd04511           9 YQNPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP-H-I   83 (130)
T ss_pred             CCCCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC-C-c
Confidence            344567777777755 899999986432  6789999999999999999999999999999998776666655432 1 2


Q ss_pred             ccEEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817          269 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK  306 (365)
Q Consensus       269 ~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~  306 (365)
                      ....++|.+...  ...+. ...|..+++|+++++++.
T Consensus        84 ~~~~~~f~~~~~--~~~~~-~~~e~~~~~~~~~~~l~~  118 (130)
T cd04511          84 SQVYMFYRARLL--DLDFA-PGPESLEVRLFTEEEIPW  118 (130)
T ss_pred             eEEEEEEEEEEc--CCccc-CCcchhceEEECHHHCCc
Confidence            334566666653  23333 346788999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=6.5e-17  Score=140.08  Aligned_cols=114  Identities=20%  Similarity=0.337  Sum_probs=82.1

Q ss_pred             EEEEEEEeCC---CeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccc--
Q 017817          195 GVGGFVINDN---NEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNV--  266 (365)
Q Consensus       195 ~V~~vVin~~---g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~--  266 (365)
                      +|.++|+|.+   +++|+++|.......+|.|++ |||++++||++++||+||++||||+.++.  +..++.......  
T Consensus         4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~   83 (144)
T cd04692           4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI   83 (144)
T ss_pred             EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence            3778899877   899999987554567899999 59999999999999999999999998643  444444332221  


Q ss_pred             -c--CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817          267 -A--FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       267 -~--~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                       .  ......+|++........+.++++|+.+++|++++++.++.
T Consensus        84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  128 (144)
T cd04692          84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL  128 (144)
T ss_pred             CCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence             1  11233455565532223445667899999999999997753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.70  E-value=3.2e-16  Score=129.85  Aligned_cols=113  Identities=27%  Similarity=0.422  Sum_probs=83.6

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      +.+++.++++++||++|+.++ ..+|.|.+|||+++.+|++.+||.||+.||||+++.....++..............+|
T Consensus         4 ~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (124)
T cd03425           4 VAAIIIDDDGRILIAQRPAGK-HLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF   82 (124)
T ss_pred             EEEEEECCCCEEEEEEeCCCC-CCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence            445566777999999986444 5799999999999999999999999999999999877666665444333333333444


Q ss_pred             EEEEecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD  313 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~  313 (365)
                      .+...  ....  ...|..++.|++++++.+++++..+
T Consensus        83 ~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~~  116 (124)
T cd03425          83 LVELW--SGEP--QLLEHQELRWVPPEELDDLDFPPAD  116 (124)
T ss_pred             EEeee--CCCc--ccccCceEEEeeHHHcccCCCCccc
Confidence            44332  2222  2457789999999999999888765

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>TIGR00586 mutt mutator mutT protein

Probab=99.70  E-value=6.2e-16  Score=130.05  Aligned_cols=119  Identities=17%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF  274 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~  274 (365)
                      .++++++++++++||++|... ..+.|.|++|||.+++||++.+|++||+.||||+++.....++...+..........+
T Consensus         6 ~~~~ii~~~~~~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~   84 (128)
T TIGR00586         6 IAVGIIRNENGEIIITRRADG-HMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFW   84 (128)
T ss_pred             EEEEEEECCCCEEEEEEEeCC-CCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEE
Confidence            355566678889999999644 3578999999999999999999999999999999987666665544433333333334


Q ss_pred             EEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817          275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID  321 (365)
Q Consensus       275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~  321 (365)
                      |.+...  +...  ...+..+++|++++++.+++++...   +++++
T Consensus        85 ~~~~~~--~~~~--~~~~~~~~~W~~~~~l~~~~~p~~~---~~~~~  124 (128)
T TIGR00586        85 LLERWE--GGPP--GKEGQPEEWWVLVGLLADDFFPAAN---PVIIK  124 (128)
T ss_pred             EEEEEc--CCCc--CcccccccEEeCHHHCCccCCCCCC---HHHHH
Confidence            444432  2221  2345667899999999999888754   45554

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.70  E-value=1.1e-16  Score=135.26  Aligned_cols=118  Identities=27%  Similarity=0.529  Sum_probs=82.8

Q ss_pred             EEEEEEEeCCC---eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe--ec-c-cc
Q 017817          195 GVGGFVINDNN---EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH--AH-N-VA  267 (365)
Q Consensus       195 ~V~~vVin~~g---~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~--~~-~-~~  267 (365)
                      ++++++++.++   ++||++++     . +.|.+|||++++||++.+||+||++||||+++....+++.+.  .. . ..
T Consensus         4 ~~g~vi~~~~~~~~~vLl~~~~-----~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   77 (130)
T cd03428           4 SAGAIIYRRLNNEIEYLLLQAS-----Y-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG   77 (130)
T ss_pred             EEEEEEEEecCCCceEEEEEcc-----C-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC
Confidence            46677776443   79999985     2 899999999999999999999999999999988766642111  11 1 11


Q ss_pred             CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHH
Q 017817          268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  323 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~  323 (365)
                      ......+|++.... ...+..+ +|+.+++|++++++.++.....   ++.+++.+
T Consensus        78 ~~~~~~~f~~~~~~-~~~~~~~-~E~~~~~W~~~~e~~~~~~~~~---~~~~~~~~  128 (130)
T cd03428          78 KLKTVTYFLAELRP-DVEVKLS-EEHQDYRWLPYEEALKLLTYED---LKAVLDKA  128 (130)
T ss_pred             cceEEEEEEEEeCC-CCccccc-cceeeEEeecHHHHHHHcCchh---HHHHHHHh
Confidence            23445666666542 2334444 7899999999999998755442   35555544

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=2.3e-16  Score=137.32  Aligned_cols=114  Identities=18%  Similarity=0.348  Sum_probs=81.7

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee----EEEEEEeecc----
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV----EVIAFRHAHN----  265 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~----~ll~~~~~~~----  265 (365)
                      ++|.++++|.++++||++|...+..++|.|.+|||++++||++.+||+||++||||+.+...    .+++......    
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~   81 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL   81 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence            46778889999999999997554457899999999999999999999999999999998653    4555432211    


Q ss_pred             --cc--CccEEEEEEEEEecC----CccccCCccceeeEEEEcccccccC
Q 017817          266 --VA--FQKSDLFFICMLKPL----STEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       266 --~~--~~~~~~~f~~~l~~~----~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                        ..  ......|+++.....    ...+.++++|+.+++|++++++.++
T Consensus        82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~  131 (143)
T cd04694          82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV  131 (143)
T ss_pred             CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence              11  122333333332211    1133455689999999999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.9e-16  Score=135.18  Aligned_cols=107  Identities=21%  Similarity=0.455  Sum_probs=75.0

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcc-eeeEEEEEEee---ccc----
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT-EFVEVIAFRHA---HNV----  266 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~-~~~~ll~~~~~---~~~----  266 (365)
                      +|+++|+++ ++|||+++.     ..+.|.+|||++|+||++.+||+||++||||+.+ .....++....   ...    
T Consensus         2 ~~~~ii~~~-~~vLLv~~~-----~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~   75 (131)
T cd04686           2 AVRAIILQG-DKILLLYTK-----RYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD   75 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEc-----CCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence            467777764 799999985     2368999999999999999999999999999987 44555554421   111    


Q ss_pred             cCccEEEEEEEEEecCCccccCCccce---eeEEEEcccccccC
Q 017817          267 AFQKSDLFFICMLKPLSTEIKVDDLEI---KGAKWMPFMEFVKQ  307 (365)
Q Consensus       267 ~~~~~~~~f~~~l~~~~~~i~~~~~Ei---~~~~Wv~leEl~~~  307 (365)
                      .+....++|+|...........++.|.   ..++|+|++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence            122345677777654333344443333   36899999998763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=3.7e-16  Score=132.22  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=77.7

Q ss_pred             EEEEEEeCC---CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeecccc----
Q 017817          196 VGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV-EVIAFRHAHNVA----  267 (365)
Q Consensus       196 V~~vVin~~---g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~-~ll~~~~~~~~~----  267 (365)
                      +++++++.+   +++||+++.     ..+.|.+|||++|+||++.+||+||++||||+++... ..++.+......    
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~-----~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~   77 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSR-----RTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRP   77 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEec-----CCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCC
Confidence            556666643   689999885     2389999999999999999999999999999998777 777765443322    


Q ss_pred             CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817          268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      ......+|.+.....  ....++.|+.+++|++++++.++...
T Consensus        78 ~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~ea~~~~~~  118 (122)
T cd04666          78 PRCEVAVFPLEVTEE--LDEWPEMHQRKRKWFSPEEAALLVEE  118 (122)
T ss_pred             ceEEEEEEEEEEecc--ccCCcccCceEEEEecHHHHHHhcCC
Confidence            123445555554322  22223456789999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=2.5e-16  Score=134.20  Aligned_cols=107  Identities=21%  Similarity=0.335  Sum_probs=74.2

Q ss_pred             eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEE---EEeeccccCccEEEEEEEE
Q 017817          202 NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA---FRHAHNVAFQKSDLFFICM  278 (365)
Q Consensus       202 n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~---~~~~~~~~~~~~~~~f~~~  278 (365)
                      +.++++||++|...   .+|.|.+|||++++||++.+||+||++||||+++.......   ..............+|++.
T Consensus        11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   87 (131)
T cd04695          11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF   87 (131)
T ss_pred             CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence            46689999999633   47899999999999999999999999999999986543221   1112111111223344444


Q ss_pred             EecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817          279 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD  313 (365)
Q Consensus       279 l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~  313 (365)
                      ... ...+. .++|+.+++|++++++.++...+.+
T Consensus        88 ~~~-~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~~  120 (131)
T cd04695          88 VPP-HQEVV-LNHEHTEYRWCSFAEALELAPFPGQ  120 (131)
T ss_pred             ecC-CCccc-cCchhcccEecCHHHHHHhcCChhH
Confidence            432 22233 3478999999999999988776654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=4.9e-16  Score=128.64  Aligned_cols=100  Identities=20%  Similarity=0.310  Sum_probs=75.0

Q ss_pred             EeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEe
Q 017817          201 INDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLK  280 (365)
Q Consensus       201 in~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~  280 (365)
                      ...++++||+++.      .+.|.+|||++++||++.+||.||++||||+++.....+..+..    ......+|.+...
T Consensus         7 ~~~~~~vLlv~r~------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~   76 (112)
T cd04667           7 CRRGGRVLLVRKS------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASVP   76 (112)
T ss_pred             EecCCEEEEEEcC------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEcC
Confidence            3456899999984      37999999999999999999999999999999876666654322    1223445555443


Q ss_pred             cCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          281 PLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       281 ~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                        ........+|+.+++|++++++.++..+..
T Consensus        77 --~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  106 (112)
T cd04667          77 --PSAQPKPSNEIADCRWLSLDALGDLNASAA  106 (112)
T ss_pred             --CcCCCCCchheeEEEEecHHHhhhcccchh
Confidence              222233467899999999999998877654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.67  E-value=3.7e-16  Score=141.32  Aligned_cols=116  Identities=14%  Similarity=0.279  Sum_probs=83.2

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeE-EEEEEee-ccccCc-
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE-VIAFRHA-HNVAFQ-  269 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~-ll~~~~~-~~~~~~-  269 (365)
                      .+|++++++++++|||+||......++|.|.+| ||++++||++++||+||++||||+++.... +++.+.. .....+ 
T Consensus        35 ~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  114 (184)
T PRK03759         35 LAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGI  114 (184)
T ss_pred             eEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCc
Confidence            457788899999999999865555578899987 899999999999999999999999986433 2322211 111111 


Q ss_pred             ---cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          270 ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       270 ---~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                         ....+|++...   +.+.++++|+.+++|++++++.++....+
T Consensus       115 ~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~~~~  157 (184)
T PRK03759        115 VENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVDATP  157 (184)
T ss_pred             eeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHHhCC
Confidence               12344555442   34566778999999999999988654443

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.67  E-value=3.8e-16  Score=138.64  Aligned_cols=115  Identities=16%  Similarity=0.298  Sum_probs=83.8

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeEEE-EEEe-ec--cccC
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEVI-AFRH-AH--NVAF  268 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~ll-~~~~-~~--~~~~  268 (365)
                      .+|++++++++++|||++|.......+|.|.+| ||++++||++++||+||++||||+.+....++ .... ..  ....
T Consensus        31 ~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  110 (165)
T cd02885          31 RAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGGL  110 (165)
T ss_pred             eEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCCc
Confidence            457788899999999999976655679999997 89999999999999999999999998766654 2221 11  1111


Q ss_pred             c--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          269 Q--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       269 ~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      .  ....+|.+...   ....++.+|+.+++|++++++.++....
T Consensus       111 ~~~~i~~~f~~~~~---~~~~~~~~Ev~~~~w~~~~el~~~~~~~  152 (165)
T cd02885         111 VEHEIDHVFFARAD---VTLIPNPDEVSEYRWVSLEDLKELVAAA  152 (165)
T ss_pred             eeeEEEEEEEEEeC---CCCCCCccceeEEEEECHHHHHHHHHhC
Confidence            1  12234444432   2344567899999999999998865443

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.66  E-value=6.4e-16  Score=140.10  Aligned_cols=117  Identities=15%  Similarity=0.081  Sum_probs=88.1

Q ss_pred             eEEEEEEEeC-CCeEEEEeeecCCCC-----CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc
Q 017817          194 VGVGGFVIND-NNEVLVVQEKYCNPA-----FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA  267 (365)
Q Consensus       194 v~V~~vVin~-~g~VLLvrr~~~~~~-----~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~  267 (365)
                      .+|++++++. +++|||+++ ++++.     .+..|++|||++|+||++++||+||++||||+.+..+..++.+...++.
T Consensus        45 ~~v~vl~~~~~~~~vlLvrq-~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~  123 (185)
T TIGR00052        45 NAAAVLLYDPKKDTVVLIEQ-FRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGG  123 (185)
T ss_pred             CeEEEEEEECCCCEEEEEEC-ceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCC
Confidence            3577787875 479999988 56554     5789999999999999999999999999999999888888776666665


Q ss_pred             CccEEEEEEEEEecCC--ccccCCccceeeEEEEcccccccCCCCc
Q 017817          268 FQKSDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~--~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      ......+|++......  .....+++|..+..|++++++.++....
T Consensus       124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G  169 (185)
T TIGR00052       124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG  169 (185)
T ss_pred             CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence            5556667777653211  1112245666789999999998875433

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.66  E-value=1.6e-15  Score=138.07  Aligned_cols=114  Identities=17%  Similarity=0.102  Sum_probs=90.4

Q ss_pred             EEEEEEEeC-CCeEEEEeeecCCCC------CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc
Q 017817          195 GVGGFVIND-NNEVLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA  267 (365)
Q Consensus       195 ~V~~vVin~-~g~VLLvrr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~  267 (365)
                      +|++++++. +++++|+++ +|++.      ....|++|+|.+|+| ++++||+||++||||+.+..+..++.+...++.
T Consensus        47 ~v~Vl~~~~~~~~vvLvrQ-yR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~  124 (191)
T PRK15009         47 GATILLYNAKKKTVVLIRQ-FRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  124 (191)
T ss_pred             EEEEEEEECCCCEEEEEEc-ccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCcc
Confidence            466777775 679999999 78876      778899999999976 699999999999999999988888887777777


Q ss_pred             CccEEEEEEEEEecC--CccccCCccceeeEEEEcccccccCCCC
Q 017817          268 FQKSDLFFICMLKPL--STEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~--~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      .....++|++.....  ......+++|..++.|+|++|+.++...
T Consensus       125 s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~  169 (191)
T PRK15009        125 VTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKT  169 (191)
T ss_pred             cCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHc
Confidence            776667777765311  1122345778889999999999887543

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.65  E-value=7.6e-16  Score=135.97  Aligned_cols=114  Identities=16%  Similarity=0.269  Sum_probs=81.4

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeec-cccCc
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE--VIAFRHAH-NVAFQ  269 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~--ll~~~~~~-~~~~~  269 (365)
                      .+|+++|+|.+++|||+||...+...+|.|++| ||+++.||  .+||+||++||||+++....  .+...... ....+
T Consensus        28 ~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g  105 (158)
T TIGR02150        28 RAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG  105 (158)
T ss_pred             EEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCC
Confidence            347788999999999999976655689999997 79999999  49999999999999986554  23221111 11112


Q ss_pred             --cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          270 --KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       270 --~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                        ....+|.+..  . ..+.++.+|+.+++|++++|+.++...++
T Consensus       106 ~~~~~~~f~~~~--~-~~~~~~~~Ev~~~~W~~~~el~~~~~~~~  147 (158)
T TIGR02150       106 EHELCPVFFARA--P-VPLNPNPEEVAEYRWVSLEELKEILKAPW  147 (158)
T ss_pred             cEEEEEEEEEec--C-CcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence              2233444433  2 24556677999999999999988765544

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.64  E-value=4.9e-16  Score=146.94  Aligned_cols=132  Identities=26%  Similarity=0.369  Sum_probs=104.2

Q ss_pred             CcceeeccccccCCC-CCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHH
Q 017817          169 EPEYLMLTYWIPDGP-CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE  247 (365)
Q Consensus       169 ~~~y~~l~~wl~~~~-~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EE  247 (365)
                      .+.+.....|...|+ +....||..-++|.+++++.+. +||.++...   .+|.+.+-+|+||+|||+++|++|||+||
T Consensus       119 ~~~~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~~-ilLa~~~~h---~~g~yS~LAGFVE~GETlE~AV~REv~EE  194 (279)
T COG2816         119 TKTYPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGDE-ILLARHPRH---FPGMYSLLAGFVEPGETLEQAVAREVFEE  194 (279)
T ss_pred             CcCccccCceeeeCCCCCCccCCCCCCeEEEEEecCCc-eeecCCCCC---CCcceeeeeecccCCccHHHHHHHHHHHh
Confidence            555666666777664 4567788888888777776544 888877532   38999999999999999999999999999


Q ss_pred             hCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccc-cccCC
Q 017817          248 TGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME-FVKQP  308 (365)
Q Consensus       248 TGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leE-l~~~~  308 (365)
                      +||+++.+++++   +++++|..+ ++..|.....+++|+++..|+.+++||+.+| ++.++
T Consensus       195 ~Gi~V~~vrY~~---SQPWPfP~S-LMigf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~  252 (279)
T COG2816         195 VGIKVKNVRYVG---SQPWPFPHS-LMLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALP  252 (279)
T ss_pred             hCeEEeeeeEEe---ccCCCCchh-hhhhheeeeccccccCCcchhhhccccCHhHHhhhcC
Confidence            999999888766   677888743 4555555566788999999999999999999 55554

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.63  E-value=2.1e-15  Score=148.88  Aligned_cols=114  Identities=24%  Similarity=0.416  Sum_probs=79.2

Q ss_pred             CcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----ec
Q 017817          190 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----AH  264 (365)
Q Consensus       190 ~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~-----~~  264 (365)
                      +...++|++++++ +++|||++|...  ++.|.|.+|||++|+||++++||+||++||||+++....+.+...     ..
T Consensus       200 ~~~~vtv~avv~~-~g~VLLvrR~~~--p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~  276 (340)
T PRK05379        200 PPTFVTVDAVVVQ-SGHVLLVRRRAE--PGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH  276 (340)
T ss_pred             CCcceEEEEEEEE-CCEEEEEEecCC--CCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence            3345778777765 679999998643  358999999999999999999999999999999876544332211     11


Q ss_pred             cc--cC-ccEEEEEEEEEecCC-ccccCCccceeeEEEEcccccccC
Q 017817          265 NV--AF-QKSDLFFICMLKPLS-TEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       265 ~~--~~-~~~~~~f~~~l~~~~-~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      +.  .. ....++|.+...... ..+. ..+|..+++|++++++..+
T Consensus       277 p~r~~~~~~i~~~f~~~~~~~~~~~~~-~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        277 PGRSLRGRTITHAFLFEFPAGELPRVK-GGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCCCCCCcEEEEEEEEEecCCccCccC-CCCceeeEEEEEHHHhhhh
Confidence            11  11 234456666553221 1122 3568899999999999875

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=2.1e-15  Score=129.55  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=79.1

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcc-eeeEEEEEE----eeccccCc
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT-EFVEVIAFR----HAHNVAFQ  269 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~-~~~~ll~~~----~~~~~~~~  269 (365)
                      ++.+++++.+++|||+++........+.|.+|||++++||++.+||.||++||||+.+ .....+...    ........
T Consensus         2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~   81 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR   81 (133)
T ss_pred             eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence            4788999999999999886432236789999999999999999999999999999998 544444222    11222222


Q ss_pred             cEEEEEEEEEecCCcc-cc--CC-ccceeeEEEEcccccccC
Q 017817          270 KSDLFFICMLKPLSTE-IK--VD-DLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~-i~--~~-~~Ei~~~~Wv~leEl~~~  307 (365)
                      ...++|++........ ..  .. ..++.+++|++++++.+.
T Consensus        82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            4456777765421111 11  11 234668999999999886

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=6.3e-15  Score=120.87  Aligned_cols=113  Identities=25%  Similarity=0.460  Sum_probs=80.7

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc--cCccEE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSD  272 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~--~~~~~~  272 (365)
                      ++++++++.++++||++|...   ..+.|.+|||+++.||++.++|+||+.||+|+.+.....+..+.....  ......
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   78 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVV   78 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEE
Confidence            467888888799999998633   579999999999999999999999999999998865454444332222  222334


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      .+|.+........ ..++.|..+++|++++++.++....
T Consensus        79 ~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~~l~~~~~~~  116 (123)
T cd02883          79 FVFLARLVGGEPT-LLPPDEISEVRWVTLDELPALALSP  116 (123)
T ss_pred             EEEEEEeCCCCcC-CCCCCccceEEEEcHHHCccccccc
Confidence            4454544322111 2356778899999999998865544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.60  E-value=8.8e-15  Score=133.18  Aligned_cols=114  Identities=19%  Similarity=0.218  Sum_probs=83.4

Q ss_pred             eEEEEEEEe--CCCeEEEEeeecCCCCCCCceEeceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCcc
Q 017817          194 VGVGGFVIN--DNNEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK  270 (365)
Q Consensus       194 v~V~~vVin--~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~  270 (365)
                      .++.++++.  +++.+|++||........|.|+||||.+|+| |++++||+||++||||+++..+..++.........+.
T Consensus        31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  110 (190)
T PRK10707         31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY  110 (190)
T ss_pred             CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence            345555453  4468888887644434678999999999985 6899999999999999999999988876644344444


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      ....+++.+.. .....++++|+.++.|+|++++.++.
T Consensus       111 ~~~~~v~~~~~-~~~~~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707        111 QVTPVVGIIPP-DLPYRANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             EEEEEEEEECC-CCCCCCChhhhheEEEEeHHHHhCcc
Confidence            44444444432 23445577899999999999998864

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.57  E-value=7.8e-15  Score=125.56  Aligned_cols=98  Identities=24%  Similarity=0.283  Sum_probs=68.9

Q ss_pred             CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-----Eee-cc------ccCcc
Q 017817          203 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-----RHA-HN------VAFQK  270 (365)
Q Consensus       203 ~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-----~~~-~~------~~~~~  270 (365)
                      +++++||++++++   ..+.|.||||++|+||++.+||+||++||||+++.. .+++.     +.. .+      ...+.
T Consensus        11 ~~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~   86 (132)
T cd04661          11 DDTLVLLVQQKVG---SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGA   86 (132)
T ss_pred             cCcEEEEEEeecC---CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCccc
Confidence            4578999998632   368999999999999999999999999999998764 23221     111 11      11123


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ...+|.|...  ++++.+ .+|+.+++|++++|+.++
T Consensus        87 ~~~~f~~~~~--~g~~~~-~~e~~~~~W~~~~el~~~  120 (132)
T cd04661          87 KVFFFKARYM--SGQFEL-SQNQVDFKWLAKEELQKY  120 (132)
T ss_pred             EEEEEEEEEe--cCcccc-CCCcceeEecCHHHHHhh
Confidence            3455555543  444443 478899999999999875

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=2.8e-14  Score=128.31  Aligned_cols=110  Identities=15%  Similarity=0.265  Sum_probs=78.2

Q ss_pred             EEEEeCC--CeEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCcceeeE---EEEEEe---e-cccc
Q 017817          198 GFVINDN--NEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVE---VIAFRH---A-HNVA  267 (365)
Q Consensus       198 ~vVin~~--g~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~---ll~~~~---~-~~~~  267 (365)
                      +++.|.+  +++++.||...+..++|.|+ +|||++++||++.+||+||++||||+++....   .++...   . ....
T Consensus        39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~  118 (180)
T cd03676          39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG  118 (180)
T ss_pred             EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence            4566765  89999999888778999995 89999999999999999999999999986533   233211   1 1111


Q ss_pred             C-ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817          268 F-QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       268 ~-~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      . .....+|.+.. +....+.++++|+.++.|++++|+.++.
T Consensus       119 ~~~e~~~~f~~~~-~~~~~~~~~~~Ev~~~~~~~~~el~~~l  159 (180)
T cd03676         119 LQPEVEYVYDLEL-PPDFIPAPQDGEVESFRLLTIDEVLRAL  159 (180)
T ss_pred             EeeeEEEEEEEEc-CCCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence            1 12233344433 2223355677899999999999998753

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.55  E-value=1e-13  Score=122.13  Aligned_cols=123  Identities=19%  Similarity=0.156  Sum_probs=87.5

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      ..|.++++.+ +++||+++.      ...|++|||++|+||++++||+||++||||+.+..+..++.+...+........
T Consensus        25 ~~V~ii~~~~-~~~LL~~~~------~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~   97 (156)
T TIGR02705        25 NHVLVIPRYK-DQWLLTEHK------RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKD   97 (156)
T ss_pred             CEEEEEEEEC-CEEEEEEEc------CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEE
Confidence            3465665654 489999874      245999999999999999999999999999999999999987776655445556


Q ss_pred             EEEEEEecCCccccCCccceeeEE-EEcccccccCCCCcCC---chHHHHHHHHHHHHh
Q 017817          274 FFICMLKPLSTEIKVDDLEIKGAK-WMPFMEFVKQPLIQGD---CMFKKVIDICIARLR  328 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~~~~Ei~~~~-Wv~leEl~~~~~~~~~---~~~~~il~~~l~~lr  328 (365)
                      +|++.....  +   +.+|..+.. ++++++++++....+.   -+-...+..++++++
T Consensus        98 vf~A~~~~~--~---~~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~  151 (156)
T TIGR02705        98 VYFAEVSAL--E---SKDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERAK  151 (156)
T ss_pred             EEEEEEecc--c---cCCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHHH
Confidence            666666422  2   125545555 7999999876544321   133456667776664

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PRK08999 hypothetical protein; Provisional

Probab=99.53  E-value=1.4e-13  Score=133.83  Aligned_cols=113  Identities=16%  Similarity=0.232  Sum_probs=81.5

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      +.+++++.++++||++|... ..+.|.|++|||++++||++.+||.||++||||+++.....+....+..........+|
T Consensus         8 ~~~vi~~~~~~vLL~kR~~~-~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y   86 (312)
T PRK08999          8 AAGVIRDADGRILLARRPEG-KHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR   86 (312)
T ss_pred             EEEEEECCCCeEEEEEecCC-CCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence            44566677789999998643 35789999999999999999999999999999999876665554443333333233344


Q ss_pred             EEEEecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD  313 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~  313 (365)
                      .+...  ...  +...|..+++|++++++.+++++...
T Consensus        87 ~~~~~--~~~--~~~~e~~~~~Wv~~~el~~~~~~~~~  120 (312)
T PRK08999         87 RVTAW--QGE--PHGREGQPLAWVAPDELAVYPFPPAN  120 (312)
T ss_pred             EEEEe--cCc--ccCccCCccEEecHHHcccCCCCcch
Confidence            33332  122  23456788999999999998887754

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.52  E-value=2.1e-15  Score=143.25  Aligned_cols=116  Identities=23%  Similarity=0.304  Sum_probs=86.0

Q ss_pred             CCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc
Q 017817          186 LPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN  265 (365)
Q Consensus       186 lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~  265 (365)
                      -..||+.-+.|.+++++.+++.+|..|+.++  .+|+|..++|++|+||+++|||+||++||||++++.+.+..   ..+
T Consensus       180 n~~yPr~dPvVIm~li~~d~~~~LL~R~~r~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~a---sQP  254 (345)
T KOG3084|consen  180 NVIYPRTDPVVIMLLIDHDGKHALLGRQKRY--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVA---SQP  254 (345)
T ss_pred             CeeccCCCCeEEEEEEcCCCCEeeeecccCC--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeee---cCC
Confidence            3456666677888889877765555554455  47899999999999999999999999999999998877544   556


Q ss_pred             cc-CccEEEEEEEEEecCCccccCCcc-ceeeEEEEccccccc
Q 017817          266 VA-FQKSDLFFICMLKPLSTEIKVDDL-EIKGAKWMPFMEFVK  306 (365)
Q Consensus       266 ~~-~~~~~~~f~~~l~~~~~~i~~~~~-Ei~~~~Wv~leEl~~  306 (365)
                      ++ ++.+.+...+.+....++++.+.+ |..+++|++.+|+.+
T Consensus       255 WP~~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~  297 (345)
T KOG3084|consen  255 WPLMPQSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS  297 (345)
T ss_pred             CCCCchHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence            66 444333222222223367888877 999999999998754

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=1.7e-13  Score=115.55  Aligned_cols=100  Identities=24%  Similarity=0.309  Sum_probs=75.6

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      |.+++++ ++++||++++      .+.|++|||++++||++++||+||++||||+.+.....++.+............+|
T Consensus         3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y   75 (118)
T cd04665           3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVY   75 (118)
T ss_pred             EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEE
Confidence            4455554 4799999884      35799999999999999999999999999999988888887765554334445566


Q ss_pred             EEEEecCCccccCCccceeeEEEEccccc
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEF  304 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl  304 (365)
                      .+.....  .......|+....|++.+..
T Consensus        76 ~a~~~~~--~~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          76 PAVSAQL--EEKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEEEec--ccccccccccCcEEeccCCc
Confidence            6655432  22234689999999997655

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PLN03143 nudix hydrolase; Provisional

Probab=99.52  E-value=1.3e-13  Score=132.62  Aligned_cols=143  Identities=17%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             eEEEEEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEE-eCCCe--EEEEeeecCC
Q 017817          140 KKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVI-NDNNE--VLVVQEKYCN  216 (365)
Q Consensus       140 ~r~vWl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVi-n~~g~--VLLvrr~~~~  216 (365)
                      .|.-|+++..+..++++.....+..+++.                         .+|+++++ +.+++  ++|++| ++.
T Consensus       100 ~~~gflkv~~d~~~l~~G~~~~~~v~~rg-------------------------~aVaVL~~l~~~ge~~VlLVrQ-~R~  153 (291)
T PLN03143        100 KRIGFLKFKADIIDKETGQKVPGIVFARG-------------------------PAVAVLILLESEGETYAVLTEQ-VRV  153 (291)
T ss_pred             CceeEEEEEEEEEECCCCCEeeEEEEEcC-------------------------CeEEEEEEEeCCCCEEEEEEEe-Eec
Confidence            34348888888877776322122222221                         23555544 44444  888888 677


Q ss_pred             CCCCCceEeceeeecC-CCCHHHHHHHHHHHHhCCccee--eEEEE---------EEeeccccCccEEEEEEEEEecCC-
Q 017817          217 PAFAGLWKLPTGFIDE-SEEIFKGAVREVKEETGVDTEF--VEVIA---------FRHAHNVAFQKSDLFFICMLKPLS-  283 (365)
Q Consensus       217 ~~~~g~W~lPGG~ve~-GEs~~eAAiREv~EETGl~~~~--~~ll~---------~~~~~~~~~~~~~~~f~~~l~~~~-  283 (365)
                      +.+...|++|||.+|+ +|++.+||+||++||||+.+..  +..+.         .+...++.......+|++...... 
T Consensus       154 pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~~v~~~  233 (291)
T PLN03143        154 PVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRGHVDKE  233 (291)
T ss_pred             CCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEccccchh
Confidence            7788899999999998 5899999999999999998643  22231         233444444444455555443211 


Q ss_pred             ------c--cccCCccceeeEEEEcccccccCC
Q 017817          284 ------T--EIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       284 ------~--~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                            .  ....+++|..++.|++++|+.++.
T Consensus       234 ~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~  266 (291)
T PLN03143        234 TIRQLQGKETGLRDHGELIKVHVVPYRELWRMT  266 (291)
T ss_pred             hhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence                  1  112256788899999999988775

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=5.6e-13  Score=112.41  Aligned_cols=56  Identities=32%  Similarity=0.406  Sum_probs=44.0

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF  254 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~  254 (365)
                      +++++...+ .+||++|...  ...+.|.||||++|+||++.+||+||++||||+++..
T Consensus         7 av~vl~~~~-~~lL~~r~~~--~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~   62 (118)
T cd04674           7 VVALLPVDD-GLLVIRRGIE--PGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP   62 (118)
T ss_pred             EEEEEEECC-CEEEEEeecC--CCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence            334444444 5777776543  2579999999999999999999999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.49  E-value=5.9e-13  Score=113.26  Aligned_cols=58  Identities=31%  Similarity=0.403  Sum_probs=45.7

Q ss_pred             EEEEEEe---CCCeEEEEeeecC--CCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce
Q 017817          196 VGGFVIN---DNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE  253 (365)
Q Consensus       196 V~~vVin---~~g~VLLvrr~~~--~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~  253 (365)
                      +++++++   +..+|||+++...  .....+.|++|||+++.||++.+||+||++||||+++.
T Consensus         3 ~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           3 AGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            5666665   2247999986321  01357899999999999999999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PLN02709 nudix hydrolase

Probab=99.44  E-value=1.1e-12  Score=121.55  Aligned_cols=104  Identities=22%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             CeEEEEeeecCCCCCCCceEeceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEec-C
Q 017817          205 NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKP-L  282 (365)
Q Consensus       205 g~VLLvrr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~-~  282 (365)
                      ..|||++|.......+|.|.||||++|+| +++.+||+||+.||+||.....++++.........+....-|++.+.. .
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~  130 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK  130 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence            47999999754445799999999999997 579999999999999999988888887665555555555666665542 1


Q ss_pred             CccccCCccceeeEEEEcccccccCC
Q 017817          283 STEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       283 ~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      .....++++|+.++.|+|++++.+..
T Consensus       131 ~~~~~~np~EV~~vf~vPL~~ll~~~  156 (222)
T PLN02709        131 AFKPLPNPAEVEEIFDVPLEMFLKDK  156 (222)
T ss_pred             CccccCChhhhheeEEecHHHHhCCc
Confidence            23444677899999999999997644

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.41  E-value=1.6e-12  Score=122.65  Aligned_cols=118  Identities=15%  Similarity=0.223  Sum_probs=80.2

Q ss_pred             CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCC-----------------HHHHHHHHHHHHhCC
Q 017817          189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEE-----------------IFKGAVREVKEETGV  250 (365)
Q Consensus       189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs-----------------~~eAAiREv~EETGl  250 (365)
                      .-.|+. +.++|+|.+|++||+||...+..++|.|+.. +|++..||+                 ..+||+||++|||||
T Consensus        53 gl~Hra-~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI  131 (247)
T PLN02552         53 GLLHRA-FSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI  131 (247)
T ss_pred             CceEEE-EEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence            344444 7899999999999999988788899999776 455555422                 678999999999999


Q ss_pred             ccee-----eEEEEEEeecccc---------C-c-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817          251 DTEF-----VEVIAFRHAHNVA---------F-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       251 ~~~~-----~~ll~~~~~~~~~---------~-~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      .+..     +.+++.+......         . . ..+.++ +.......++.++++|+.+++|++++|+.++.
T Consensus       132 ~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~-~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~  204 (247)
T PLN02552        132 PAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLL-FIRPVRDVKVNPNPDEVADVKYVNREELKEMM  204 (247)
T ss_pred             CccccccccceeeeEEEEecccccccccCCCccceEEEEEE-EEEecCCCcccCCHHHhheEEEEeHHHHHHHH
Confidence            9643     3334422211111         1 1 222222 22222234677888999999999999999863

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.41  E-value=2.8e-12  Score=109.29  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             EEEEEEeCCC--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEeeccccCccEE
Q 017817          196 VGGFVINDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV-IAFRHAHNVAFQKSD  272 (365)
Q Consensus       196 V~~vVin~~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~l-l~~~~~~~~~~~~~~  272 (365)
                      |.+++.+.++  ++|+.+..      .+.|++|||.+++||++.+||+||++||||+++..... +..............
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~------~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHP------LAGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFW   76 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcC------CCcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEE
Confidence            4455555544  66666553      24599999999999999999999999999999732221 122111111112222


Q ss_pred             EEEEEEEe---cCCc--cccCCccceeeEEEEcccccccC
Q 017817          273 LFFICMLK---PLST--EIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       273 ~~f~~~l~---~~~~--~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      .++++...   +...  ....++.+...+.|++++++...
T Consensus        77 ~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~~  116 (126)
T cd04663          77 HLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLDE  116 (126)
T ss_pred             EEEEEEecCCCcccccCcccCCCCceEEEEEEcccccccc
Confidence            33333331   1111  11222344445669999999554

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.38  E-value=4.9e-12  Score=114.58  Aligned_cols=119  Identities=11%  Similarity=0.120  Sum_probs=72.1

Q ss_pred             EEEEEeCC---CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeE----------------E
Q 017817          197 GGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE----------------V  257 (365)
Q Consensus       197 ~~vVin~~---g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~----------------l  257 (365)
                      ++++.+..   -++|+++|.     ..+.|.||||++++||++.+||+||++||||+.++...                .
T Consensus        38 ~~i~~~~~~~~l~vLl~~r~-----~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~  112 (186)
T cd03670          38 GSIHPKSGKPILQFVAIKRP-----DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDG  112 (186)
T ss_pred             EEEEecCCCCeeEEEEEEeC-----CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccc
Confidence            34444432   368888885     46899999999999999999999999999976532110                1


Q ss_pred             EEEEe-eccccC----cc-EEEEEEEEEecCC--ccccC-CccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          258 IAFRH-AHNVAF----QK-SDLFFICMLKPLS--TEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       258 l~~~~-~~~~~~----~~-~~~~f~~~l~~~~--~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      +..+. ....+.    .. ..+.|.+......  ....+ ..+|..+++|+++++++.+.+.+     .++|+.+.+
T Consensus       113 ~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH-----~~Il~~a~~  184 (186)
T cd03670         113 VEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH-----SQFLKKVAE  184 (186)
T ss_pred             cEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccccCH-----HHHHHHHHH
Confidence            11111 111111    11 2233333321100  11112 24578899999999998776655     566666654

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN02791 Nudix hydrolase homolog

Probab=99.28  E-value=1.7e-11  Score=131.13  Aligned_cols=113  Identities=19%  Similarity=0.407  Sum_probs=82.0

Q ss_pred             EEEEEEEeC-CCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEee----ccc
Q 017817          195 GVGGFVIND-NNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHA----HNV  266 (365)
Q Consensus       195 ~V~~vVin~-~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~----~~~  266 (365)
                      +|.++++|. ++++||+||...+..++|.|++ |||+++.||++.+||+||++||+||.+..  ...++.+..    ...
T Consensus        34 AvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g  113 (770)
T PLN02791         34 AVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDG  113 (770)
T ss_pred             EEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCC
Confidence            478899996 6999999998888889999999 79999999999999999999999998643  344443211    111


Q ss_pred             cCc--cEEEEEEEEE-ecC-CccccCCccceeeEEEEcccccccC
Q 017817          267 AFQ--KSDLFFICML-KPL-STEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       267 ~~~--~~~~~f~~~l-~~~-~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      .+.  ....+|++.. .+. ..++.++++|+.+++|++++|+.++
T Consensus       114 ~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~  158 (770)
T PLN02791        114 KFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA  158 (770)
T ss_pred             CcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence            111  2233344332 111 1246678899999999999999754

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.28  E-value=6.2e-11  Score=99.12  Aligned_cols=112  Identities=29%  Similarity=0.454  Sum_probs=70.6

Q ss_pred             EEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHH-HHHHHHHHHhCCcce--eeEEEEEEeeccccCc--
Q 017817          196 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK-GAVREVKEETGVDTE--FVEVIAFRHAHNVAFQ--  269 (365)
Q Consensus       196 V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~e-AAiREv~EETGl~~~--~~~ll~~~~~~~~~~~--  269 (365)
                      +.+++.... +++|+++++...    +.|.+|||++++||++.+ ||+||++||||+.+.  ....++.+........  
T Consensus        14 ~~~~~~~~~~~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   89 (161)
T COG0494          14 VAVLVGRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV   89 (161)
T ss_pred             EEEEEecCCCCEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc
Confidence            334444333 789999886321    699999999999999888 999999999999988  4555554443332221  


Q ss_pred             --cEEE-EEEEEEec-CCccccCC---ccceeeEEEEcccccccCCCCc
Q 017817          270 --KSDL-FFICMLKP-LSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       270 --~~~~-~f~~~l~~-~~~~i~~~---~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                        .... ++.+.... ....+...   ..|...+.|++++++.......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  138 (161)
T COG0494          90 GGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE  138 (161)
T ss_pred             cceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence              1122 22222111 11111111   2578899999999998765544

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.20  E-value=4.1e-11  Score=102.70  Aligned_cols=126  Identities=17%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             eeEEEEEEEeCC-C--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-eccc-c
Q 017817          193 QVGVGGFVINDN-N--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-AHNV-A  267 (365)
Q Consensus       193 ~v~V~~vVin~~-g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~-~~~~-~  267 (365)
                      +..++++++..+ .  +|||++-.+    .+..|-+|+|++|+||+..+||+||+.||.|+......+++.+. ..+. .
T Consensus         9 r~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~   84 (145)
T KOG2839|consen    9 RLVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKH   84 (145)
T ss_pred             EEEEEeeeeeecCcceEEEEEecCC----CCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhh
Confidence            344666666533 3  899998763    25689999999999999999999999999999998888554332 2111 1


Q ss_pred             CccE-EEEEEEEEecCCccccC-CccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817          268 FQKS-DLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  326 (365)
Q Consensus       268 ~~~~-~~~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~  326 (365)
                      .... ...|..... ...+.-+ ...|..+.+|+.++|..+...   +.-++..+..+++.
T Consensus        85 ~~~~k~~~~~l~v~-e~le~wp~~~~~~r~r~W~~ledA~~~~~---~~~m~~al~e~~~~  141 (145)
T KOG2839|consen   85 RTKPKGVMYVLAVT-EELEDWPESEHEFREREWLKLEDAIELCQ---HKWMKAALEEFLQF  141 (145)
T ss_pred             cccccceeehhhhh-hhcccChhhhcccceeEEeeHHHHHHHHh---hHHHHHHHHHHHHH
Confidence            1111 122222211 1112111 234588999999999877643   22334444444443

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.17  E-value=2.5e-10  Score=102.30  Aligned_cols=112  Identities=21%  Similarity=0.296  Sum_probs=73.8

Q ss_pred             EEEEEEE-eCCC--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          195 GVGGFVI-NDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       195 ~V~~vVi-n~~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      +|+++.+ ..+|  .++|+++ +|++.+.-..++|+|.||.||++++||+||++||||+.-+....-......++..+..
T Consensus        75 gVaIl~il~~dG~~~ivL~kQ-fRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~  153 (225)
T KOG3041|consen   75 GVAILAILESDGKPYIVLVKQ-FRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCN  153 (225)
T ss_pred             eEEEEEEEecCCcEEEEEEEe-ecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCc
Confidence            4444433 2344  5777777 8999889999999999999999999999999999999854433222222333443433


Q ss_pred             EEEEEEEEe---cCCc--cccCCccceeeEEEEcccccccC
Q 017817          272 DLFFICMLK---PLST--EIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       272 ~~~f~~~l~---~~~~--~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ....++...   +.+.  ...+++.|..++.-+++.++.+.
T Consensus       154 ~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~  194 (225)
T KOG3041|consen  154 LCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE  194 (225)
T ss_pred             eEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence            333333332   2111  12346788999999998887653

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.03  E-value=3.4e-09  Score=87.22  Aligned_cols=110  Identities=18%  Similarity=0.332  Sum_probs=74.1

Q ss_pred             EEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEE
Q 017817          198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC  277 (365)
Q Consensus       198 ~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~  277 (365)
                      ++++..++++||.||.. ...+.|+|+||+|.++.+|+.+++..||+.||.++   ....++...+....+.....+|.+
T Consensus         7 ~~ii~~~~~~ll~kR~~-~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~   82 (118)
T cd03431           7 VVVIRNDGRVLLEKRPE-KGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLA   82 (118)
T ss_pred             EEEEecCCeEEEEECCC-CCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEE
Confidence            34445578999999964 45689999999999999999999999999999875   122233333434444434445555


Q ss_pred             EEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817          278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID  321 (365)
Q Consensus       278 ~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~  321 (365)
                      ....  ..     .+..+++|++++++.+++++.   ..+++++
T Consensus        83 ~~~~--~~-----~~~~~~~W~~~eel~~~~~p~---~~~kil~  116 (118)
T cd03431          83 RLEG--DL-----LAPDEGRWVPLEELDEYALPT---VMRKILE  116 (118)
T ss_pred             EEeC--CC-----cCccccEEccHHHHhhCCCCH---HHHHHHH
Confidence            4421  11     234578999999999987765   3345443

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.82  E-value=1.1e-08  Score=94.42  Aligned_cols=114  Identities=20%  Similarity=0.272  Sum_probs=79.5

Q ss_pred             eEEEEEEEeC-C--CeEEEEeeecCCCCCCCceEeceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc
Q 017817          194 VGVGGFVIND-N--NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ  269 (365)
Q Consensus       194 v~V~~vVin~-~--g~VLLvrr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~  269 (365)
                      .+|.+.+++. +  -+|||.+|...-..++|.-.||||..|+. ++-.++|.||.+||.|++.+...+++.........+
T Consensus        44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~  123 (246)
T KOG3069|consen   44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSG  123 (246)
T ss_pred             ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccC
Confidence            3455555554 2  46888888654456789999999999985 577789999999999999988887775544433333


Q ss_pred             cEEEEEEEEEecCC--ccccCCccceeeEEEEcccccccC
Q 017817          270 KSDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       270 ~~~~~f~~~l~~~~--~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ....-+++.+....  ....+..+|..++.|+|++++..-
T Consensus       124 ~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~  163 (246)
T KOG3069|consen  124 WSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP  163 (246)
T ss_pred             cccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence            33333333332111  345567899999999999999763

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.81  E-value=1.2e-08  Score=90.16  Aligned_cols=117  Identities=13%  Similarity=0.263  Sum_probs=88.1

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeE---EEE---EEeecccc
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE---VIA---FRHAHNVA  267 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~---ll~---~~~~~~~~  267 (365)
                      +..++++|++|++|+.||...+..+++.|.=- .||--+||+..+||+|-+.+|+||+.....   ++.   ++......
T Consensus        35 AFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~  114 (185)
T COG1443          35 AFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDG  114 (185)
T ss_pred             hhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCC
Confidence            46789999999999999988888899999975 688889999999999999999999987322   222   11222233


Q ss_pred             CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                      ....-+.++...+..+ .+.+.++|+.+++|++++++.++.....
T Consensus       115 ~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~~~  158 (185)
T COG1443         115 IVENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDATP  158 (185)
T ss_pred             cceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcCCc
Confidence            3333455555554333 5667789999999999999988765554

>PLN02839 nudix hydrolase

Probab=98.62  E-value=3.6e-07  Score=90.11  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=74.9

Q ss_pred             CCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCccee---eEEEEEEeecc-ccCc-cEEEEEE
Q 017817          203 DNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEF---VEVIAFRHAHN-VAFQ-KSDLFFI  276 (365)
Q Consensus       203 ~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~---~~ll~~~~~~~-~~~~-~~~~~f~  276 (365)
                      .+.++++.||...+..++|+|+- .||.+..||++.++++||..||.||....   ....+.+.... ...+ .....|+
T Consensus       216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~  295 (372)
T PLN02839        216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFC  295 (372)
T ss_pred             CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEE
Confidence            33579999998888889999995 68999999999999999999999997542   22233322211 1111 2345555


Q ss_pred             EEEe-cCCccccCCccceeeEEEEcccccccC
Q 017817          277 CMLK-PLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       277 ~~l~-~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      +.+. +.+..++++++|++++.+++++|+.+.
T Consensus       296 YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~  327 (372)
T PLN02839        296 YDLELPQDFVPKNQDGEVESFKLIPVAQVANV  327 (372)
T ss_pred             eeeecCCccccCCCccceeEEEEecHHHHHHH
Confidence            5554 222344667899999999999999754

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.61  E-value=1.9e-07  Score=77.55  Aligned_cols=106  Identities=18%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             EEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEE
Q 017817          198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC  277 (365)
Q Consensus       198 ~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~  277 (365)
                      +++++.++++||.||. ....+.|+|+||.-.++... ..+++.+.+.+..|+.+.....++.+.+..+++.....+|.+
T Consensus         2 ~~i~~~~~~~Ll~kRp-~~gll~GLwefP~~e~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~   79 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRP-EKGLLAGLWEFPLIESDEED-DEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV   79 (114)
T ss_dssp             EEEEETTSEEEEEE---SSSTTTT-EE--EEE-SSS--CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred             EEEEEeCCEEEEEECC-CCChhhcCcccCEeCccCCC-CHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence            5778899999999996 44569999999998887433 356666677788888876666666666666665555566666


Q ss_pred             EEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       278 ~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      .+.....      .+..+.+|++++++.+++++.
T Consensus        80 ~~~~~~~------~~~~~~~W~~~~~l~~~~~p~  107 (114)
T PF14815_consen   80 EVSADPP------AEPEEGQWVSLEELDQYPLPT  107 (114)
T ss_dssp             EEE-SS----------TTEEEEEGGGGGGS---H
T ss_pred             EecCCCC------CCCCCcEEEEHHHHhhCCCCH
Confidence            6543211      145688999999999988866

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.50  E-value=6.6e-07  Score=75.21  Aligned_cols=125  Identities=20%  Similarity=0.263  Sum_probs=76.0

Q ss_pred             eEEEEEEEeC-CC--eEEEEeee--cCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee-eEEEEEEeecccc
Q 017817          194 VGVGGFVIND-NN--EVLVVQEK--YCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF-VEVIAFRHAHNVA  267 (365)
Q Consensus       194 v~V~~vVin~-~g--~VLLvrr~--~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~-~~ll~~~~~~~~~  267 (365)
                      ..++++++.. .|  .|||+.--  +....+.|.|.+|.|....||++..||+||..||+||.++- ...++..   ...
T Consensus         4 ~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~---kQ~   80 (161)
T COG4119           4 LSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSL---KQS   80 (161)
T ss_pred             ccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhh---ccC
Confidence            3466677652 23  46666541  11223578899999999999999999999999999998732 1122211   111


Q ss_pred             CccEEE----------------EEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHH
Q 017817          268 FQKSDL----------------FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI  322 (365)
Q Consensus       268 ~~~~~~----------------~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~  322 (365)
                      -++..+                .|-....+.++..+. -.|...+.||+++|.....+..+..++.++...
T Consensus        81 GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~-FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~  150 (161)
T COG4119          81 GGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRK-FPEVDRAGWFPLAEARTKILKGQRPFLDRLMAH  150 (161)
T ss_pred             CCcEEEEEeeeeeeehhhhhcceeeeecCCCCCcccc-CcccccccceecHHHHhHHhhccchHHHHHHHH
Confidence            122222                233333344444432 357889999999998876666654444444333

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.63  E-value=7.2e-05  Score=67.75  Aligned_cols=115  Identities=20%  Similarity=0.326  Sum_probs=81.7

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEe---------ceeeecC-CCCHHHHHHHHHHHHhCCcceee-----EEEE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL---------PTGFIDE-SEEIFKGAVREVKEETGVDTEFV-----EVIA  259 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l---------PGG~ve~-GEs~~eAAiREv~EETGl~~~~~-----~ll~  259 (365)
                      +..++++|.++++||+||...+..+++.|.=         |+...+. +.....||+|-+.-|+||..+.+     .+++
T Consensus        54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~lt  133 (225)
T KOG0142|consen   54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLT  133 (225)
T ss_pred             eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccce
Confidence            4678999999999999998888888888872         2322221 34678999999999999987543     3444


Q ss_pred             EEe---eccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817          260 FRH---AHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       260 ~~~---~~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      .++   ...+.+|...+-|+..+.. +..++++++|+.+++|++.+|+.++...
T Consensus       134 rihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~  186 (225)
T KOG0142|consen  134 RIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAK  186 (225)
T ss_pred             eeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhc
Confidence            333   2335556555555555443 4567777899999999999999876433

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.34  E-value=0.0016  Score=57.30  Aligned_cols=108  Identities=18%  Similarity=0.294  Sum_probs=73.8

Q ss_pred             EEEEeCCCeEEEEeeecCCC--CCCCceEe-ceeeecCCC--CHHH-----HHHHHHHHHhCCc---ceeeEEEEEEeec
Q 017817          198 GFVINDNNEVLVVQEKYCNP--AFAGLWKL-PTGFIDESE--EIFK-----GAVREVKEETGVD---TEFVEVIAFRHAH  264 (365)
Q Consensus       198 ~vVin~~g~VLLvrr~~~~~--~~~g~W~l-PGG~ve~GE--s~~e-----AAiREv~EETGl~---~~~~~ll~~~~~~  264 (365)
                      +++.++ ++||+-.|-.+..  ...+.+.+ .|||+..++  ++.+     .+.||+.||.++.   ......+++....
T Consensus        66 vvi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd  144 (203)
T COG4112          66 VVIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDD  144 (203)
T ss_pred             EEEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCC
Confidence            445554 4999998854332  22456777 489998754  3332     3679999999998   5557788887766


Q ss_pred             cccCccEEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817          265 NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK  306 (365)
Q Consensus       265 ~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~  306 (365)
                      ....++.++-.++..+....+....+.+..+++|+.++++.+
T Consensus       145 ~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         145 TNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             CcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence            666666776666655433344444566788999999999977

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.12  E-value=7.4e-05  Score=72.32  Aligned_cols=103  Identities=24%  Similarity=0.303  Sum_probs=65.8

Q ss_pred             eEEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccccCcc
Q 017817          194 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQK  270 (365)
Q Consensus       194 v~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~~~~~~~~  270 (365)
                      ++.+++++|.. .++||++..     ....|.+|-|++..+|+-.++|+|||.||||.+....  ...+ +  .....+.
T Consensus        83 Pv~ga~ild~~~sr~llv~g~-----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~-I--e~nI~dq  154 (348)
T KOG2937|consen   83 PVRGAIILDEKRSRCLLVKGW-----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-I--ETNIRDQ  154 (348)
T ss_pred             CCchHhhhhhhhhhhheeece-----ecccccccCccccccchhhhcchhcccchhhcCHHHHhccccC-c--ccchhhc
Confidence            45677888865 678888774     3445999999999999999999999999999987421  1111 0  0111121


Q ss_pred             E-EEEEEEEEecC-CccccCCccceeeEEEEcccccc
Q 017817          271 S-DLFFICMLKPL-STEIKVDDLEIKGAKWMPFMEFV  305 (365)
Q Consensus       271 ~-~~~f~~~l~~~-~~~i~~~~~Ei~~~~Wv~leEl~  305 (365)
                      . .+|....+... ...+. -..|+..+.|..++++.
T Consensus       155 ~~~~fIi~gvs~d~~f~~~-v~~eis~ihW~~l~~l~  190 (348)
T KOG2937|consen  155 LVRLFIINGVSEDTNFNPR-VRKEISKIHWHYLDHLV  190 (348)
T ss_pred             eeeeeeeccceeeeecchh-hhccccceeeeehhhhc
Confidence            1 22333222211 11111 24688899999999983

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.02  E-value=0.00054  Score=62.98  Aligned_cols=39  Identities=31%  Similarity=0.519  Sum_probs=35.2

Q ss_pred             eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhC
Q 017817          206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG  249 (365)
Q Consensus       206 ~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG  249 (365)
                      +++.+||+     ..+.|.+|||.+|+||.+-.+.+||..||.=
T Consensus       140 e~vavkr~-----d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRP-----DNGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecC-----CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            67778885     6889999999999999999999999999974

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.61  E-value=0.012  Score=58.57  Aligned_cols=111  Identities=11%  Similarity=0.104  Sum_probs=59.4

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF  274 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~  274 (365)
                      ...++++..++++|+.||. ....+.|+|+||..  +..     ...++..|+.|+.......++.+.+..+++......
T Consensus       232 ~~~~~~~~~~~~~~l~~r~-~~gl~~gl~~fP~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~  303 (350)
T PRK10880        232 TGYFLLLQHGDEVWLEQRP-PSGLWGGLFCFPQF--ADE-----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVP  303 (350)
T ss_pred             EEEEEEEEECCEEEEEECC-ccChhhccccCCCC--cch-----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEE
Confidence            3444555567899999986 34568999999963  211     124566688887532222233233323333322223


Q ss_pred             EEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817          275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID  321 (365)
Q Consensus       275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~  321 (365)
                      +.+....  .... ...  .+..|++++++.+++++..   .+++++
T Consensus       304 ~~~~~~~--~~~~-~~~--~~~~w~~~~~~~~~~~p~~---~~k~l~  342 (350)
T PRK10880        304 MWLPVSS--FTGC-MDE--GNGLWYNLAQPPSVGLAAP---VERLLQ  342 (350)
T ss_pred             EEEEccc--cccc-cCC--cCCeEechHHhcccCCcHH---HHHHHH
Confidence            3332211  1000 111  2346999999999888773   355554

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=95.15  E-value=0.078  Score=51.11  Aligned_cols=85  Identities=15%  Similarity=0.048  Sum_probs=60.6

Q ss_pred             eEeceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccccCccEEEEEEEEEecCC----ccccCCccceeeE
Q 017817          223 WKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVAFQKSDLFFICMLKPLS----TEIKVDDLEIKGA  296 (365)
Q Consensus       223 W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~~~~~~~~~f~~~l~~~~----~~i~~~~~Ei~~~  296 (365)
                      .++.+|.|+..-+..+-|.||..||.|+++..  .+.+..+.+.-+..+....+|+|..+...    +--..+++|+.+.
T Consensus       286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEv  365 (405)
T KOG4432|consen  286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEV  365 (405)
T ss_pred             eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeE
Confidence            56778888888889999999999999999754  34455555555566656666777664221    1122356788888


Q ss_pred             EEEcccccccC
Q 017817          297 KWMPFMEFVKQ  307 (365)
Q Consensus       297 ~Wv~leEl~~~  307 (365)
                      .-+++++++.+
T Consensus       366 v~lsle~a~~~  376 (405)
T KOG4432|consen  366 VRLSLEDAPSL  376 (405)
T ss_pred             EEechhhhhHH
Confidence            99999998775

>COG4111 Uncharacterized conserved protein [General function prediction only]

Probab=94.39  E-value=0.22  Score=47.09  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhcc--cCCCCCCCCccCcc-hhhHHHHHHhcC--CCCCC
Q 017817          317 KKVIDICIARLRKR--YCGLYPHQLVSAFD-GQTSSLYYNDSD--TQDTN  361 (365)
Q Consensus       317 ~~il~~~l~~lr~~--y~g~~~~~l~~~f~-~~~~~ly~~~~~--~~~~~  361 (365)
                      ++++..+++++|.+  |.|+.+..+|+.|| -++|.--+.+.+  +.+.|
T Consensus       222 RRIlATa~aRLR~KIKYRPVVFELmp~~FTLlqLQrtVEAisGr~lhKqN  271 (322)
T COG4111         222 RRILATALARLRAKIKYRPVVFELMPPEFTLLQLQRTVEAISGRLLHKQN  271 (322)
T ss_pred             HHHHHHHHHHHHhcccccceEEEecCchhhHHHHHHHHHHHcCcccchhh
Confidence            78899999999887  99999999999999 999998888887  44444

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=94.08  E-value=0.18  Score=47.50  Aligned_cols=98  Identities=13%  Similarity=0.207  Sum_probs=65.0

Q ss_pred             CeEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE---E---EE--eeccccCccEEEEE
Q 017817          205 NEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI---A---FR--HAHNVAFQKSDLFF  275 (365)
Q Consensus       205 g~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll---~---~~--~~~~~~~~~~~~~f  275 (365)
                      -++.+.||+..+..|++.|+ +.||++--|-.+.++|+.|..||..++.....-+   |   ++  .+..+.+.  ..-|
T Consensus       148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~p--e~qY  225 (306)
T KOG4313|consen  148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFP--ETQY  225 (306)
T ss_pred             eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCc--cceE
Confidence            36888899888888999998 5699999999999999999999999987332211   1   11  11112222  3445


Q ss_pred             EEEEecC-CccccCCccceeeEEEEccccc
Q 017817          276 ICMLKPL-STEIKVDDLEIKGAKWMPFMEF  304 (365)
Q Consensus       276 ~~~l~~~-~~~i~~~~~Ei~~~~Wv~leEl  304 (365)
                      ++.+... ..-++..+.|...+..+++.|.
T Consensus       226 VfDL~l~~d~iP~~nDGEV~~F~Lltl~~~  255 (306)
T KOG4313|consen  226 VFDLELPLDFIPQNNDGEVQAFELLTLKDC  255 (306)
T ss_pred             EEeccCchhhcCCCCCCceeeEeeecHHHH
Confidence            5555322 2223445677877777766554

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=93.78  E-value=0.18  Score=48.73  Aligned_cols=66  Identities=23%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             eEEEEEEEeCC-CeEEEEeeecCCCCC-------------------------CCceEeceeeecCCCCHHHHHHHHHHHH
Q 017817          194 VGVGGFVINDN-NEVLVVQEKYCNPAF-------------------------AGLWKLPTGFIDESEEIFKGAVREVKEE  247 (365)
Q Consensus       194 v~V~~vVin~~-g~VLLvrr~~~~~~~-------------------------~g~W~lPGG~ve~GEs~~eAAiREv~EE  247 (365)
                      -+|.+++++.+ .++|++++ +++...                         .-..++.||.||..-++.+-|..||.||
T Consensus        27 ~~v~ill~~r~~eq~l~vrq-fr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~ee  105 (405)
T KOG4432|consen   27 SSVSILLFHRDLEQFLLVRQ-FRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEE  105 (405)
T ss_pred             cceEEEEEccchhhhehhhh-hchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHH
Confidence            35777888866 45677766 333221                         1235688999999999999999999999


Q ss_pred             hCCcceeeEEEEE
Q 017817          248 TGVDTEFVEVIAF  260 (365)
Q Consensus       248 TGl~~~~~~ll~~  260 (365)
                      .|+++...+++..
T Consensus       106 cgy~v~~d~l~hv  118 (405)
T KOG4432|consen  106 CGYRVDPDDLIHV  118 (405)
T ss_pred             hCCcCChhHceEE
Confidence            9999987665543

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=93.49  E-value=0.31  Score=44.36  Aligned_cols=48  Identities=23%  Similarity=0.445  Sum_probs=33.6

Q ss_pred             EEEEeCC--CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCc
Q 017817          198 GFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD  251 (365)
Q Consensus       198 ~vVin~~--g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~  251 (365)
                      ++++...  -.|||.|..      ...|.+|||.+.+||+..++..|.+.+-.|..
T Consensus        49 Vllvh~h~~PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   49 VLLVHEHGHPHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             EEEEEETTEEEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             EEEEecCCCcEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            3444444  368988863      44899999999999999999999999999976

...

>PRK13910 DNA glycosylase MutY; Provisional

Probab=92.61  E-value=0.57  Score=45.58  Aligned_cols=91  Identities=13%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             EEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEE
Q 017817          198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC  277 (365)
Q Consensus       198 ~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~  277 (365)
                      ++++ .++++||.||.  ...+.|+|+||..  +.              +.+....   .++.+.+..+++......+.+
T Consensus       191 ~~~~-~~~~~ll~kr~--~~l~~gl~~fP~~--~~--------------~~~~~~~---~~~~~~H~fTH~~~~~~~~~~  248 (289)
T PRK13910        191 GVVI-QNNQIALEKIE--QKLYLGMHHFPNL--KE--------------NLEYKLP---FLGAIKHSHTKFKLNLNLYLA  248 (289)
T ss_pred             EEEE-ECCEEEEEECC--CchhcccccCCCC--hh--------------hhccccc---ccCceEEEEEeEEEEEEEEEE
Confidence            3444 46789998874  3478999999963  21              1111111   122222323333322233333


Q ss_pred             EEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHH
Q 017817          278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC  323 (365)
Q Consensus       278 ~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~  323 (365)
                      ...   .    .   ..+.+|++++++.+++++..   .+++++.+
T Consensus       249 ~~~---~----~---~~~~~w~~~~~~~~~~~p~~---~~k~~~~l  281 (289)
T PRK13910        249 AIK---D----L---KNPIRFYSLKDLETLPISSM---TLKILNFL  281 (289)
T ss_pred             Eec---c----C---CccceEecHHHhhhcCCcHH---HHHHHHHH
Confidence            221   0    0   12448999999999888763   45555443

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=91.93  E-value=0.33  Score=43.24  Aligned_cols=46  Identities=26%  Similarity=0.417  Sum_probs=38.1

Q ss_pred             EEEEeCC--CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhC
Q 017817          198 GFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG  249 (365)
Q Consensus       198 ~vVin~~--g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG  249 (365)
                      ++++.+.  -.|||.|-      +...+++|||.+++||+-.+...|-+-|-+|
T Consensus        75 vlivheH~lPHvLLLQi------g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   75 VLIVHEHNLPHVLLLQI------GNTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             eEEEeecCCCeEEEEee------CCEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            3444433  57888885      4568999999999999999999999999999

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=88.93  E-value=1.1  Score=44.48  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=61.2

Q ss_pred             CCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc
Q 017817          187 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV  266 (365)
Q Consensus       187 P~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~  266 (365)
                      |.....+..++.++.+.+++++|.++.. ...+.|.|.+|....+.       ...+...+.|+..   +.++.+.+..+
T Consensus       229 ~k~~~~~~~~~~~~~~~~~~~~l~kr~~-~gl~~gl~~fP~~e~~~-------~~~~~~~~~~~~~---~~~~~~~H~ft  297 (342)
T COG1194         229 PKKKLPRRFAAFLILNRDGEVLLEKRPE-KGLLGGLWCFPQFEDEA-------DLLDWLAADGLAA---EPLGAFRHTFT  297 (342)
T ss_pred             cccccchheeeEEEEccCcchhhhhCcc-cCceecccccccccccc-------hhhhHhhhccccc---ccccceeeeee
Confidence            3333335567777788899999999864 44589999999876544       1222233334433   22333333333


Q ss_pred             cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHH
Q 017817          267 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID  321 (365)
Q Consensus       267 ~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~  321 (365)
                      .+..... +.+..  ..       .+. +..|++++++....++.   .+++++.
T Consensus       298 h~~l~i~-~~a~~--~~-------~~~-~~~w~~~~~~~~~~l~~---p~~k~l~  338 (342)
T COG1194         298 HFRLTIE-LRASA--SL-------VLS-DGRWYNLSDLESIGLPA---PVKKLLQ  338 (342)
T ss_pred             EEEEEEE-EEeec--cc-------CCC-CceeccccccccccccH---HHHHHHH
Confidence            3221111 11111  10       222 78999999999877766   3344444

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=87.87  E-value=1.4  Score=41.80  Aligned_cols=95  Identities=16%  Similarity=0.225  Sum_probs=58.9

Q ss_pred             EEEEeeecCCCCCCCceEeceeee-cCCCCHHHHHHHHHHHHhCCcceeeE----EEEEE--eec---cccC--ccEEEE
Q 017817          207 VLVVQEKYCNPAFAGLWKLPTGFI-DESEEIFKGAVREVKEETGVDTEFVE----VIAFR--HAH---NVAF--QKSDLF  274 (365)
Q Consensus       207 VLLvrr~~~~~~~~g~W~lPGG~v-e~GEs~~eAAiREv~EETGl~~~~~~----ll~~~--~~~---~~~~--~~~~~~  274 (365)
                      +||++++.+   ..+.|.||-+.. ++++++...|.|++++-.|=....+-    .++..  +..   ....  +....+
T Consensus       141 yLLV~~k~g---~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff  217 (263)
T KOG4548|consen  141 YLLVKRKFG---KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFF  217 (263)
T ss_pred             EEEEeeccC---ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEE
Confidence            788886654   367999999999 99999999999999999996543321    12211  110   0111  112334


Q ss_pred             EEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          275 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       275 f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      |-|.+.+.+ ..  +..-..++.|++-+|+.+.
T Consensus       218 ~k~~lv~~~-~~--kn~n~edfvWvTkdel~e~  247 (263)
T KOG4548|consen  218 FKASLVANS-NQ--KNQNKEDFVWVTKDELGEK  247 (263)
T ss_pred             eeeeecccc-ch--hcccccceEEechHHHhhh
Confidence            444443322 11  2333456999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
3h95_A	199	Crystal Structure Of The Nudix Domain Of Nudt6 Leng		3e-16
3fxt_A	113	Crystal Structure Of The N-Terminal Domain Of Human		6e-08
3o8s_A	206	Crystal Structure Of An Adp-Ribose Pyrophosphatase		2e-05
1sjy_A	159	Crystal Structure Of Nudix Hydrolase Dr1025 From De		3e-05
1vc8_A	126	Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydr		8e-05
3gz8_A	162	Cocrystal Structure Of Nudix Domain Of Shewanella O		1e-04
3gz5_A	240	Crystal Structure Of Shewanella Oneidensis Nrtr Len		1e-04
1vc9_A	126	Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydr		2e-04

>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6 Length = 199

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 189 NATHQVGVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 247
           + +HQVGV G V +++  ++LVVQ++        +WK P G  +  E+I   AVREV EE
Sbjct: 22  SMSHQVGVAGAVFDESTRKILVVQDR---NKLKNMWKFPGGLSEPEEDIGDTAVREVFEE 78
Query: 248 TGVDTEFVEVIAFRHAHNV--AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWM------ 299
           TG+ +EF  V++ R  H    AF KSD++ IC LKP S  I     E    +WM      
Sbjct: 79  TGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLA 138
Query: 300 ------PFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLY 335
                 P    V + L+ G       ID+ +  L   Y GL+
Sbjct: 139 KTENTTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLF 180

>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6 Length = 113

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 105 DEYDGVVVDPKRLPS----DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 160
           D + G+ V   RL +    D  AF   L+ ++  WR   +  +WL +P+  +  +  A  
Sbjct: 30  DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 89
Query: 161 EGFKYHHAEPEYLMLTYWIPDGP 183
            GF +HHAE +   LT W+ +GP
Sbjct: 90  LGFCFHHAESDSSTLTLWLREGP 112

>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase (Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A Resolution Length = 206

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
            I   +++L+VQE        GLW LP G+ D  + +    V+EVKEE G+D E   V+A
Sbjct: 76  AIFQEDKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVA 129
Query: 260 F--RHAHN---VAFQKSDLFFICML 279
              +H +N    A + + +F +C L
Sbjct: 130 ILDKHKNNPAKSAHRVTKVFILCRL 154

>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From Deinococcus Radiodurans Length = 159

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 195 GVGGFVINDNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
             G  ++N+  ++L+VQEK    +P  AGLW +P+G +++ E     AVRE  EETG+  
Sbjct: 15  AAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRV 74
Query: 253 EFVEVI 258
             V+ +
Sbjct: 75  RPVKFL 80

>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase Ndx1-Ap6a Complex Length = 126

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
           ++G GG V N   EVL+++++       G W  P G  +  E + + AVREV EETGV  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRA 55
Query: 253 EFV 255
           E +
Sbjct: 56  EVL 58

>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella Oneidensis Nrtr Complexed With Adp Ribose Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 199 FVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDES--EEIFKGAVREVKEETGVDTEFV 255
           F  +D   +VL+VQ    N  F GLW LP GFIDE+  E + +  +R++ E+T V   ++
Sbjct: 30  FTYHDQQLKVLLVQRS--NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYI 87
Query: 256 EVIAF--RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309
           E +     ++ +       + +  ++   + +I++    +   KW P  + ++ PL
Sbjct: 88  EQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIAS--VSDVKWWPLADVLQMPL 141

>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Length = 240

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 199 FVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDES--EEIFKGAVREVKEETGVDTEFV 255
           F  +D   +VL+VQ    N  F GLW LP GFIDE+  E + +  +R++ E+T V   ++
Sbjct: 30  FTYHDQQLKVLLVQRS--NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYI 87
Query: 256 EVIAF--RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309
           E +     ++ +       + +  ++   + +I++    +   KW P  + ++ PL
Sbjct: 88  EQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIAS--VSDVKWWPLADVLQMPL 141

>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase E50q Mutant- Mg2+-atp Complex Length = 126

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
           ++G GG V N   EVL+++++       G W  P G  +  E + + AVREV E+TGV  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEQTGVRA 55
Query: 253 EFV 255
           E +
Sbjct: 56  EVL 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	8e-52
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	1e-38
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-26
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	1e-24
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	4e-24
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	8e-23
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	1e-22
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	1e-19
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	3e-19
3grn_A	153	MUTT related protein; structural genomics, hydrola	5e-19
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	7e-18
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	1e-17
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-17
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	2e-17
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	3e-17
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	2e-16
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	1e-15
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	1e-15
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	1e-14
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	1e-13
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	6e-13
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	8e-13
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	1e-12
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	1e-12
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-12
3f13_A	163	Putative nudix hydrolase family member; structural	2e-12
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	3e-12
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	3e-12
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	1e-11
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	1e-11
3exq_A	161	Nudix family hydrolase; protein structure initiati	4e-11
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	1e-10
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-10
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	3e-10
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	4e-10
2b06_A	155	MUTT/nudix family protein; structural genomics, P	5e-10
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	9e-10
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	3e-09
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	1e-08
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	3e-08
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	9e-08
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	9e-08
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	1e-07
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	3e-07
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	5e-07
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	6e-07
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	8e-07
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	9e-07
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	9e-07
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	1e-06
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	1e-06
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	3e-06
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	5e-06
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	6e-06
2fb1_A	226	Conserved hypothetical protein; structural genomic	8e-06
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	1e-05
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	1e-05
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	2e-05
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	3e-05
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	5e-05
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	8e-05
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	4e-04
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	5e-04
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	5e-04

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score =  170 bits (431), Expect = 8e-52
 Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 15/195 (7%)

Query: 162 GFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAG 221
              +HH+    L           +   + +HQVGV G V +++   ++V +         
Sbjct: 2   HHHHHHSSGVDL-------GTENLYFQSMSHQVGVAGAVFDESTRKILVVQDRNKLK--N 52

Query: 222 LWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSDLFFICML 279
           +WK P G  +  E+I   AVREV EETG+ +EF  V++ R  H    AF KSD++ IC L
Sbjct: 53  MWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRL 112

Query: 280 KPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY--CGLYPH 337
           KP S  I     E    +WM   +  K        +  +V  + +   R+ +    L   
Sbjct: 113 KPYSFTINFCQEECLRCEWMDLNDLAKTENTTP--ITSRVARLLLYGYREGFDKIDLTVE 170

Query: 338 QLVSAFDGQTSSLYY 352
           +L + + G    LY+
Sbjct: 171 ELPAVYTGLFYKLYH 185

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens} Length = 113

 Score =  133 bits (335), Expect = 1e-38
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 78  YVYRINEVNGAGSSIFSRNLRVLDFFDDEYDGVVVDPKRLPS----DPDAFASILRFSLI 133
           + +  + V+    +++ ++   L    D + G+ V   RL +    D  AF   L+ ++ 
Sbjct: 4   HHHHSSGVDLGTENLYFQS-MDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQ 62

Query: 134 HWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGP 183
            WR   +  +WL +P+  +  +  A   GF +HHAE +   LT W+ +GP
Sbjct: 63  QWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDSSTLTLWLREGP 112

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score =  102 bits (256), Expect = 1e-26
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 180 PDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKG 239
           P  P  L  N  +   V    +++ +EVL++QE        G W LP G ++  E I + 
Sbjct: 9   PPAPVRLRKNVCY--VVLAVFLSEQDEVLLIQEA--KRECRGSWYLPAGRMEPGETIVEA 64

Query: 240 AVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVD---DLEIKGA 296
             REVKEE G+  E   +++           S + F+ + +P    +K     D E   A
Sbjct: 65  LQREVKEEAGLHCEPETLLSVEERG-----PSWVRFVFLARPTGGILKTSKEADAESLQA 119

Query: 297 KWMPFME 303
            W P   
Sbjct: 120 AWYPRTS 126

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 97.2 bits (242), Expect = 1e-24
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 10/153 (6%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V V   VI  +++ L+V+E       A     P G ++  E I +   REV EETG    
Sbjct: 9   VTVAA-VIEQDDKYLLVEEI--PRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFL 65

Query: 254 FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLIQG 312
              +    H    +   + L F    + +S +  +  D  I  A W    E   +  +  
Sbjct: 66  PEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHR 125

Query: 313 DCMFKKVIDICIARLRKRYCGLYPHQLVSAFDG 345
             +  + I+   A  R      YP  ++  +DG
Sbjct: 126 TPLVMQCIEDYHAGKR------YPLDILQYYDG 152

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 96.0 bits (239), Expect = 4e-24
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V V   V++   + LVV+E   N     LW  P G ++  E + + A RE+ EETG+  +
Sbjct: 6   VTVAC-VVHAEGKFLVVEETI-NGK--ALWNQPAGHLEADETLVEAAARELWEETGISAQ 61

Query: 254 FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 313
               I               F   +        +  D +I   +W+   E     ++Q  
Sbjct: 62  PQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEE-----ILQAS 116

Query: 314 CMFKKVIDICIARLRKRYCGLYPHQLVSAF 343
            +   ++   I   +      YP +++  F
Sbjct: 117 NLRSPLVAESIRCYQSGQR--YPLEMIGDF 144

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 91.2 bits (227), Expect = 8e-23
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 14/136 (10%)

Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
           ++G GG V N   EVL+++++       G W  P G  +  E + + AVREV EETGV  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRA 55

Query: 253 EFVEVIA-FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311
           E +  +   R+ +    ++   +F+   +        +   + GA W    E        
Sbjct: 56  EVLLPLYPTRYVNPKGVEREVHWFLM--RGEGAPRLEE--GMTGAGWFSPEEARALLAFP 111

Query: 312 GDCMFKKVIDICIARL 327
            D     ++++ + RL
Sbjct: 112 ED---LGLLEVALERL 124

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 91.8 bits (228), Expect = 1e-22
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 191 THQVGVGGFVINDNNEVLVVQEKY--CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 248
                 G  ++N+  ++L+VQEK    +P  AGLW +P+G +++ E     AVRE  EET
Sbjct: 11  VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEET 70

Query: 249 GVDTEFVEVIA-FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307
           G+    V+ +  +              ++   +P  T       EI  A ++   +F + 
Sbjct: 71  GLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQL 130

Query: 308 PLIQGDCMFKKVIDICIARLRKR 330
                  M++    +  A   + 
Sbjct: 131 YAAGQIRMYQ--TKLFYADALRE 151

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 165 YHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWK 224
           +HH        T     GP  +      +VG G   I  +  +L+++ K      AG W 
Sbjct: 5   HHHHMGTLEAQT----QGPGSMQHTEQPRVGCGA-AIVRDGRILLIKRK--RAPEAGCWG 57

Query: 225 LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA--FQKSDLFFICMLKPL 282
           LP G +D  E + +   RE++EE G+  E   ++      + A         ++      
Sbjct: 58  LPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANGEHWVAPVYLA--HAF 115

Query: 283 STEIKV-DDLEIKGAKW-------MPFMEFVKQPLIQ 311
           S E +V +    +   W        P     +  L Q
Sbjct: 116 SGEPRVVEPDRHEALGWFALDDLPQPLTHATRIALEQ 152

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 82.0 bits (203), Expect = 5e-19
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
            + + V   + N+  E L+++    +   AG W LP G ++  E + +G  REV EETG+
Sbjct: 6   PYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65

Query: 251 DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309
                ++    +      +   + F      +  ++K+   E     W+   + +    
Sbjct: 66  TMVPGDIAGQVNFELTEKKVIAIVFDG--GYVVADVKLSY-EHIEYSWVSLEKILGMET 121

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 79.2 bits (195), Expect = 7e-18
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 14/131 (10%)

Query: 190 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 249
           +T  V +   V N   E L+ +    N    G W +P G + + E +     R    E G
Sbjct: 15  STPLVSLDFIVENSRGEFLLGKRT--NRPAQGYWFVPGGRVQKDETLEAAFERLTMAELG 72

Query: 250 VDTEFVE---VIAFRHAHNVAFQKSD-------LFFICMLKPLSTEIKVDDLEIKGAKWM 299
           +            ++H ++  F  +D       L F    +    E+ + D +    +W+
Sbjct: 73  LRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRF--RVSEEELLLPDEQHDDYRWL 130

Query: 300 PFMEFVKQPLI 310
                +    +
Sbjct: 131 TSDALLASDNV 141

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 247
            N    V     +I  N+++LV ++K       G +    G I  +E      VREVKEE
Sbjct: 14  DNTVFGVRATA-LIVQNHKLLVTKDK-------GKYYTIGGAIQVNESTEDAVVREVKEE 65

Query: 248 TGVDTEFVEVIA----FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 303
            GV  +  ++            V++   +  ++  L   +     +D + +  +W+   +
Sbjct: 66  LGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDK 125

Query: 304 FVKQPL 309
                L
Sbjct: 126 LQNIQL 131

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 80.1 bits (197), Expect = 2e-17
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 196 VGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
            G  +++    + ++V+    +      W  P G ID+ E     A+REV EETG D   
Sbjct: 104 RGAIMLDMSMQQCVLVKGWKAS----SGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 159

Query: 255 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
                      +  Q   L+ I  +   +        EI   +W   M+   
Sbjct: 160 RINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPT 211

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 77.5 bits (191), Expect = 3e-17
 Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
            QV V G ++ ++ +VL+V++K  N      W LP G ++  E + +  +RE++EETG++
Sbjct: 22  MQVRVTG-ILIEDEKVLLVKQKVAN----RDWSLPGGRVENGETLEEAMIREMREETGLE 76

Query: 252 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKG-----AKWMPFMEFVK 306
            +  +++      + +     + F+   + +  EI +   E         + +P  E   
Sbjct: 77  VKIKKLLYVCDKPDASPSLLHITFLL--ERIEGEITLPSNEFDHNPIHDVQMVPINELSY 134

Query: 307 QPLIQGD 313
               +  
Sbjct: 135 YGFSETF 141

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 184 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVRE 243
               G  T +V +   V+  N ++L V+EK       G W LP G+ D      + A +E
Sbjct: 59  ASETGYQTPKVDIRA-VVFQNEKLLFVKEKSD-----GKWALPGGWADVGYTPTEVAAKE 112

Query: 244 VKEETGVDTEFVEVIA-----FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKW 298
           V EETG + +  +++A            A     +F  C  + +  E K    E +  ++
Sbjct: 113 VFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGC--EIIGGEKKTSI-ETEEVEF 169

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
            +   V N+  E L++Q           W  P G ++  E+  + A+R  +EE G++   
Sbjct: 19  CLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQ 74

Query: 255 VEVIA-FRHAHNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310
           + +I  F+   N   +   K+ ++++  +K    EI++   E +  +W+   E  +    
Sbjct: 75  LTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYRWLGLEEACQLAQF 133

Query: 311 QGDCMFKKVIDICIARLRKR 330
           +     K  +      L   
Sbjct: 134 KEM---KAALQEGHQFLCSI 150

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 196 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
            G  + N+N +++L+VQ        +  W  P G I + E      +REVKEE G D   
Sbjct: 7   RGAAIFNENLSKILLVQGTE-----SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD 61

Query: 255 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
                     N+  +   +F I  +  +         EI   +W  F +  K
Sbjct: 62  YIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISK 113

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 15/120 (12%)

Query: 184 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVRE 243
           C   G  T ++     +  ++  +LV +         GLW LP G+ D  + +    V+E
Sbjct: 61  CNETGYQTPKLDTRAAIFQEDKILLVQEND-------GLWSLPGGWCDVDQSVKDNVVKE 113

Query: 244 VKEETGVDTEFVEVIA----FRHAHN-VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKW 298
           VKEE G+D E   V+A     ++     A + + +F +C  + L  E + +  E   + +
Sbjct: 114 VKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILC--RLLGGEFQPNS-ETVASGF 170

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 18/144 (12%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
           V   V+ +N +VL+V+ K       G++  P G ++ +E   +   RE +EETG+  E +
Sbjct: 3   VTSGVLVENGKVLLVKHKR-----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57

Query: 256 EVIAFRHAHNVAFQKSDLFFICMLKPLSTE----------IKVDDLEIKGAKWMPFMEFV 305
                    N   +   L  +  +     E          +K    ++K  +W+   E  
Sbjct: 58  GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREID 117

Query: 306 KQPLIQGDCMFKKVIDICIARLRK 329
           +          +KV+ + ++ L +
Sbjct: 118 RIETFPNV---RKVVSLALSTLYR 138

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 65.8 bits (160), Expect = 6e-13
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 24/181 (13%)

Query: 165 YHHAEPEYLMLTYWIPDGP-CVLPGNATHQVGVGGFVIN-DNNEVLVVQEKYCNPAFAGL 222
               E +  +    + D    +   N    +    F +N + N+ L++            
Sbjct: 16  NEQEERDKELFLRCLNDFHDILTRDNTIAHLTSSAFAVNKERNKFLMIHHNI-----YNS 70

Query: 223 WKLPTGFIDESEEIFKGAVREVKEETG-------------VDTEFVEVIAFRHAHNVAFQ 269
           W    G  D  ++  K A++E+KEETG             +D   V     R  +  +  
Sbjct: 71  WAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHL 130

Query: 270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 329
             +L ++         + + + E  G  W+PF E  K      +     + +  I +L+ 
Sbjct: 131 HLNLTYLIEC-SEDETLMLKEDENSGVMWIPFNEISKYCS---EPHMIPIYEKLINKLKT 186

Query: 330 R 330
           +
Sbjct: 187 Q 187

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 67.7 bits (165), Expect = 8e-13
 Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 24/211 (11%)

Query: 136 RRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPD-GPCVLPGNATHQV 194
           +  N       +   + +L        F       + +    ++ +     L        
Sbjct: 149 KFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKRLWLKAPFKPNF 208

Query: 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
                ++  N+ +L+VQ K        LW LP GF++  E I +  +RE+ EET ++   
Sbjct: 209 VTVDALVIVNDHILMVQRK--AHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTH 266

Query: 255 VEVIAFRHAHNVAFQKSD------------LFFICMLKPLSTEIKVDDLEIKGAKWMPFM 302
            ++   +    V F   D            LF       L      DD   K  KW+   
Sbjct: 267 EQLAIAKRCEKV-FDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADD--AKDVKWISLG 323

Query: 303 EFVKQPLIQGDCMF---KKVIDICIARLRKR 330
             +K      D M     ++I I +    K+
Sbjct: 324 SNIKNIC---DRMLEDHYQIITILLEECGKK 351

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
             +      V    N  +V+ +        G + LP G I+ +E   +   REV EE G+
Sbjct: 16  QTRYAAYIIVSKPENNTMVLVQAP-----NGAYFLPGGEIEGTETKEEAIHREVLEELGI 70

Query: 251 DTEFVEVIAFRHAHNVA------FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 300
             E    +     +  +      +     F++          +  +       W+ 
Sbjct: 71  SVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVA--NTWRQLSEPLE-RTNTLHWVA 123

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 195 GVGGFVINDNNEVLVVQ-----EKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 249
            V          +L+++      +       G W +P GF+DE+E   + A RE++EET 
Sbjct: 36  TVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETS 95

Query: 250 VDTEFVEVIAF-------RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFM 302
           +    +                 ++       F  ++ P + E +    +       P  
Sbjct: 96  LTDIPLIPFGVFDKPGRDPRGWIIS-----RAFYAIVPPEALEKRAAGDDAAEIGLFPMT 150

Query: 303 EFVKQPLIQGDCMF--KKVIDICIARLRKRY 331
           E ++ PL      F    ++    + + + +
Sbjct: 151 EALELPLA-----FDHLDMLKKAFSAITEEF 176

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 192 HQVGVGGFVI-NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
            QV V  F+    N +  V+         A +W+   G  ++ E I + A RE  EE  +
Sbjct: 6   FQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEEAISETAKRESIEELNL 60

Query: 251 DTEFVEVIA--------FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFM 302
           D +              F  + N  +   +  F   L   S ++ +   E    +W+ + 
Sbjct: 61  DVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSL-EHSELRWVSYE 119

Query: 303 EFVKQPLIQGDCMFKKVIDICIARLRKR 330
             ++      +   K  +     RL+  
Sbjct: 120 SAIQLLEWDSN---KTALYELNERLKNN 144

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
                 +I   + VLV   +       G + LP G  +  E   +  +RE++EETG+   
Sbjct: 16  ARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGELRSQALIREIREETGLRIN 69

Query: 254 FVE-VIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 300
            +  +       N         ++C+      + K  + EI+    + 
Sbjct: 70  SMLYLFDHITPFNAHK-----VYLCI---AQGQPKPQN-EIERIALVS 108

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV 257
           G +    N+VL+ +     P   G W LP GF++ +E + +GA RE  EE     E  E+
Sbjct: 44  GCIPEWENKVLLCKRAI-APY-RGKWTLPAGFMENNETLVQGAARETLEEANARVEIREL 101

Query: 258 IA---FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 303
            A     H   V      + F   L  L  +      E    +     E
Sbjct: 102 YAVYSLPHISQV-----YMLFRAKL--LDLDFFPGI-ESLEVRLFGEQE 142

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
           V   ++ D+++VL++Q+        G W  P G ++  E I +   RE  EETG+  +  
Sbjct: 6   VTNCIVVDHDQVLLLQKP-----RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNP 60

Query: 256 EVIA-----FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 310
           E+             +  +     F         E+     E K  +W    E ++ P+ 
Sbjct: 61  ELKGIFSMVIFDEGKIVSEWMLFTFKA--TEHEGEMLKQSPEGK-LEWKKKDEVLELPMA 117

Query: 311 QGD 313
            GD
Sbjct: 118 AGD 120

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 248
           NA  Q  +   +I ++   L+ +       F G W L  G ++  E I +   RE++EE 
Sbjct: 23  NAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREEL 82

Query: 249 GVDTE-----------FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAK 297
           G                + +  +            L F C     + +I ++D E +   
Sbjct: 83  GEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDC--VSANRDICIND-EFQDYA 139

Query: 298 WMPFMEFVKQPLIQGD 313
           W+   E     L    
Sbjct: 140 WVKPEELALYDLNVAT 155

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 16/180 (8%)

Query: 143 IWLKLPLENAELVPIAVKEGFKYHHAEPEY----LMLTYWIPDGPCVLPGNATHQVGVGG 198
            +     +  + VP A+ +  +       Y        +                     
Sbjct: 148 YFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTD 207

Query: 199 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 258
            V+     VL+V+ +       GL  LP GFI ++E + +G +RE+KEET +      + 
Sbjct: 208 AVVVQAGHVLMVRRQ--AKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLR 265

Query: 259 AFRHAHNVAFQKSD---------LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 309
                 +V F               +   L            + + A WM   +   Q  
Sbjct: 266 GSIVDSHV-FDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEE 324

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
            ++     V +   + ++V++K  N  +      P G ++  E     A+REV EETG+ 
Sbjct: 9   VELVTMVMVTDPETQRVLVEDKV-NVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLR 67

Query: 252 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311
              V         +   Q   L  +      +  +K    E +   W+P     ++    
Sbjct: 68  LSGVTFCGTCEWFDDDRQHRKLGLLYRASNFTGTLKASA-EGQ-LSWLPITALTRENSAA 125

Query: 312 GD 313
             
Sbjct: 126 SL 127

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 59.3 bits (143), Expect = 1e-10
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
            +     F      EVL+V     +      W +P G ++  EE    AVREV EE GV 
Sbjct: 41  KRAACLCFRSESEEEVLLVS----SSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVK 96

Query: 252 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 303
                ++          +     ++ ++  +  + +      +  +W    +
Sbjct: 97  GTLGRLVGIFENQERKHRT--YVYVLIVTEVLEDWEDSVNIGRKREWFKIED 146

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 15/116 (12%)

Query: 196 VGGFVINDNN---EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
            G  +        E L++Q  Y        W  P G +D  E+ ++ A+RE KEE  +  
Sbjct: 6   AGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITK 61

Query: 253 EFVEVIA-----FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 303
           E + +         +      +    +     K  + +      E +  KW    +
Sbjct: 62  EQLTIHEDCHETLFYEAKGKPKSVKYWL---AKLNNPDDVQLSHEHQNWKWCELED 114

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 29/134 (21%)

Query: 189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 248
           +      V  F++  + +VL+   K      A       G I+ +E   +  +RE KEE 
Sbjct: 2   SLNRHFTVSVFIVCKD-KVLLHLHKK-----AKKMLPLGGHIEVNELPEEACIREAKEEA 55

Query: 249 GVDTEFVE---------------------VIAFRHAHNVAFQKSDLFFICMLKPLSTEIK 287
           G++                          +       +      D  +       S E  
Sbjct: 56  GLNVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYA--TTTSFETS 113

Query: 288 VDDLEIKGAKWMPF 301
            +  E K  KW   
Sbjct: 114 PEIGESKILKWYSK 127

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 6/135 (4%)

Query: 180 PDGPCVLPGN-ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK 238
             G      +    ++     V+     VL+  +K      AG W    G + E E I  
Sbjct: 11  SSGLVPRGSHMGASRLYTLVLVLQPQ-RVLLGMKK--RGFGAGRWNGFGGKVQEGETIED 67

Query: 239 GAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKW 298
           GA RE++EE+G+  + +  +       V   +     +     +       + +     W
Sbjct: 68  GARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPV--ESDEMRPCW 125

Query: 299 MPFMEFVKQPLIQGD 313
               +   + +   D
Sbjct: 126 FQLDQIPFKDMWPDD 140

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 15/116 (12%), Positives = 41/116 (35%), Gaps = 5/116 (4%)

Query: 199 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 258
            + +   + +V+Q +         +  P G ++  E   +  +RE+ EETG+  +  +++
Sbjct: 14  LIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLV 73

Query: 259 AFRHAHNVAFQKSDLF-FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 313
             ++       +  +  +       S  ++    E     W+   +     L    
Sbjct: 74  GIKNWPLDTGGRYIVICYKA--TEFSGTLQ--SSEEGEVSWVQKDQIPNLNLAYDM 125

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 58.7 bits (141), Expect = 9e-10
 Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 28/152 (18%)

Query: 178 WIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF 237
           W       +  +             D+ EV +V            W  P G ++++E   
Sbjct: 11  WRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPK-----YDDWSWPKGKLEQNETHR 65

Query: 238 KGAVREVKEETGVDTEFVEVIA-------------FRHAHNVAFQKSDLFFI-------- 276
             AVRE+ EETG   +    +                     A  K  L+++        
Sbjct: 66  HAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADD 125

Query: 277 --CMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
              +L       + D  EI    W+   E  K
Sbjct: 126 AEHLLDAFGPVHRADVGEINDIVWVSVREARK 157

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 160 KEGFKYHHAEPEYLMLTY--WIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNP 217
           K  ++   +  E+L   +   +P+     P      V +      D  +VL++Q K    
Sbjct: 11  KNYYERQASLAEFLTWYHQQELPEYEK--PSLTVDMVLLCYNKEADQLKVLLIQRK--GH 66

Query: 218 AFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR 261
            F   W LP GF++ +E      +RE KEETGV      +    
Sbjct: 67  PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH 110

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V +   +   + + +++ ++  +P     W+  TG ++E E   + A+REVKEE  +D  
Sbjct: 10  VSILVVIYAQDTKRVLMLQRRDDP---DFWQSVTGSVEEGETAPQAAMREVKEEVTIDVV 66

Query: 254 FVEVIAFRHAHNVAF 268
             ++        V F
Sbjct: 67  AEQLTLIDCQRTVEF 81

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 180 PDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKG 239
             GP  +P  ++  + V   +++ +N VL+ Q      + AGLW+ P G +++ E     
Sbjct: 16  TQGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPE-GKSLAGLWEFPGGKVEQGETPEAS 74

Query: 240 AVREVKEETGVDT---EFVEVIAFRHA 263
            +RE++EE GV         +    H 
Sbjct: 75  LIRELEEELGVHVQADNLFPLTFASHG 101

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 194 VGVG----GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 249
           +        +   +   +++++ KY  P       LP GF++  E + + A RE++EETG
Sbjct: 10  LATDVIIRLWDGENFKGIVLIERKY-PP---VGLALPGGFVEVGERVEEAAAREMREETG 65

Query: 250 VDTEFVEVIA 259
           ++    +++ 
Sbjct: 66  LEVRLHKLMG 75

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 51.6 bits (123), Expect = 9e-08
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDES--EEIFKGAVREVKEETGVDTEFVEVIAFRHA 263
           +VL+VQ    N  F GLW LP GFIDE+  E + +  +R++ E+T V   ++E +     
Sbjct: 38  KVLLVQRS--NHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGN 95

Query: 264 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 323
           ++   +   +             ++    +   KW P  + ++ PL        ++I+  
Sbjct: 96  NSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHL---QLIEQA 152

Query: 324 IARLRKRYC 332
             RL ++  
Sbjct: 153 RERLTQKAL 161

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
            VG  + N   +V+  +      +    W+ P G I+  E   +   RE+ EE G+  + 
Sbjct: 10  NVGIVICNRQGQVMWARRFG-QHS----WQFPQGGINPGESAEQAMYRELFEEVGLSRKD 64

Query: 255 VEVIA 259
           V ++A
Sbjct: 65  VRILA 69

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
            VG  ++N++ ++     +   P     W++P G IDE E+    A+RE++EETGV +  
Sbjct: 16  NVGICLMNNDKKIFAAS-RLDIPDA---WQMPQGGIDEGEDPRNAAIRELREETGVTS-- 69

Query: 255 VEVIA 259
            EVIA
Sbjct: 70  AEVIA 74

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 179 IPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK 238
           +            H + V    +  + ++LV Q    N + AG W+ P G I+  E   +
Sbjct: 7   VESKQKKSKIRKGHWIPVVAGFLRKDGKILVGQRPE-NNSLAGQWEFPGGKIENGETPEE 65

Query: 239 GAVREVKEETGVDTEFVEVIAF-RHA 263
              RE+ EE G++ E  E+     H+
Sbjct: 66  ALARELNEELGIEAEVGELKLACTHS 91

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
             G + N+NNE+ + +    +   A   + P G I+  E   +  VRE++EE G+  +  
Sbjct: 7   AVGIIRNENNEIFITRRAA-DAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65

Query: 256 EVIAFRHAHNVAFQKSDL-FFIC 277
            +      +    +   L F++ 
Sbjct: 66  SLFEKLE-YEFPDRHITLWFWLV 87

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
               +I+ +  VL+ Q      + AGLW+ P G ++  E      VRE+ EE GVDT 
Sbjct: 11  TAAALIDPDGRVLLAQRPP-GKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTR 67

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 187 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKE 246
           P  +   + V   +I  + ++L+ Q        AGLW+   G ++  E   +  VRE++E
Sbjct: 2   PLGSMKMIEVVAAIIERDGKILLAQRPA-QSDQAGLWEFAGGKVEPDESQRQALVRELRE 60

Query: 247 ETGVDTEFVEVIAF 260
           E G++    E +A 
Sbjct: 61  ELGIEATVGEYVAS 74

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 48.9 bits (116), Expect = 9e-07
 Identities = 28/225 (12%), Positives = 55/225 (24%), Gaps = 28/225 (12%)

Query: 101 DFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVK 160
             FD   D V++        P +    +   +                    EL  +   
Sbjct: 46  RVFDVTRDAVLLSAS--LRTPQSRTRAVADVVDRLADEGVVPAPRG------ELYRVNQS 97

Query: 161 EGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEK-YCNPAF 219
            G                +        G   + V + G+V    +  L +  +       
Sbjct: 98  WGEP----------TLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVA 147

Query: 220 AGLW-KLPTGFIDESEEIFKGAVREVKEETGVDTEFVE------VIAFRHAHNVAFQKSD 272
            G    +  G       + +  ++E  EE  +             I +        +   
Sbjct: 148 PGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDT 207

Query: 273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFK 317
           LF   +  P        D E+      P  + V + +   +  FK
Sbjct: 208 LFLYDLALPEDFRPHNTDGEMADFMLWPAAK-VVEAVRTTE-AFK 250

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
           ++  V    I D++ +L+ +  Y     +       G ID  E +++ A RE+KEE G  
Sbjct: 48  NREAVMIVPIVDDHLILIRE--YAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFG 105

Query: 252 TEFVEVIAFRHAHNVAF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
              +  +        ++   K ++     L P    ++ D+ E       P    + 
Sbjct: 106 ANDLTFLKKLSM-APSYFSSKMNIVVAQDLYP--ESLEGDEPEPLPQVRWPLAHMMD 159

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
           H+  V    + +   + V Q            ++P G I+  E+  + A RE+ E+TG+ 
Sbjct: 33  HKPAVAVIALREGRMLFVRQ--MRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 90

Query: 252 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
            +   + ++  +     +K+ +F    LK    E   D+ E     WM   E ++
Sbjct: 91  GDLTYLFSYFVSPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALE 143

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
               V    +    E +++++ +  P  A + ++  G +++ E++   A RE+ EE G  
Sbjct: 4   GPRAVFILPVTAQGEAVLIRQ-FRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGA 62

Query: 252 TEFVEVIAFRHAHNVAF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
                 +   +    +             +       +++D E      +P  E  +
Sbjct: 63  ASEWVPLPGFYP-QPSISGVVFYPLLALGVTL--GAAQLEDTETIERVVLPLAEVYR 116

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 8/112 (7%)

Query: 199 FVINDNNEVLVVQ---EKYCNPAFAGLWKLPT-GFIDESEEIFKGAVREVKEETGVDTEF 254
           F+ N   ++ + +    K   P       +   G +   E   +   RE +EE  V+ + 
Sbjct: 40  FLRNSQGQLWIPRRSPSKSLFP---NALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 96

Query: 255 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
           +               S    +  L+  +     +  +I G +W+     + 
Sbjct: 97  LSWRPLASFSPFQTTLSSFMCVYELRSDA-TPIFNPNDISGGEWLTPEHLLA 147

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 192 HQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 248
               V    +    +    L+V++ Y +P    L ++P G +DE E     A RE++EE 
Sbjct: 37  RPGPVAASFVLPVTERGTALLVRQ-YRHPTGKFLLEVPAGKVDEGETPEAAARRELREEV 95

Query: 249 GVDTEFVEVIAFRHAHNVAF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
           G + E +  +   H    +F       F     + ++    +++ E+  +  +P  E   
Sbjct: 96  GAEAETLIPLPSFHP-QPSFTAVVFHPFLALKARVVT-PPTLEEGELLESLELPLTEVYA 153

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 45.4 bits (107), Expect = 8e-06
 Identities = 17/135 (12%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
                  +L+++         G W L  GF+ + E +   A R + E TG++  ++E + 
Sbjct: 23  FNEGEISLLLLKRN--FEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVG 80

Query: 260 FRHAHNVAFQKSDL--FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFK 317
              A +    +  +   +  ++     + ++            ++   + P +  D    
Sbjct: 81  AFGAIDRDPGERVVSIAYYALININEYDRELVQ-----KHNAYWVNINELPALIFD--HP 133

Query: 318 KVIDICIARLRKRYC 332
           +++D     ++++  
Sbjct: 134 EMVDKAREMMKQKAS 148

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 191 THQVGVGGFVINDNNEVLVVQEKYCNPA-FAGLWKLPTGFIDESEEIFKGAVREVKEETG 249
           + +V     VI    + L VQ      +  +  ++ P G ++E E + +   RE+ EE  
Sbjct: 5   SIEVVAA--VIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMD 62

Query: 250 VDTEFVEVIAFRH 262
              E  E +   H
Sbjct: 63  YVIEVGEKLLTVH 75

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGV 250
           H   V    ++DN  + +V + Y +     LW+LP G +D + E     A RE++EE G+
Sbjct: 42  HFGAVAIVAMDDNGNIPMVYQ-YRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGL 100

Query: 251 DTEFVEVIAFRHAHNVAF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
                +V+         F  +   ++    L+ +       +       W P  E  +
Sbjct: 101 QASTWQVLVDLDT-APGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAAR 157

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 23/116 (19%)

Query: 201 INDNNEVLVVQEKYCNPAF-AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
           I  ++ +L+ Q    +     G+  +  GF++  E + +   REV EE+G+         
Sbjct: 147 IRRDDSILLAQ----HTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKV------- 195

Query: 260 FRHAHNVAFQKS-------DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308
                N+ +  S        L    M +  S +I +D  E+  A W  + +    P
Sbjct: 196 ----KNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLP 247

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 202 NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 258
                +++V++ +  P      + P G ID+ E     A+RE++EETG   +  E  
Sbjct: 74  LHYECIVLVKQ-FRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECS 129

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 16/109 (14%)

Query: 199 FVINDNNEVLVVQ---EKYCNPAFAGLWKLPT-GFIDESEEIFKGAVREVKEETGVDT-- 252
            V +   ++LV +    K   P   G+      G +   E++ + A RE +EE G+    
Sbjct: 43  VVHDGMGKILVQRRTETKDFLP---GMLDATAGGVVQADEQLLESARREAEEELGIAGVP 99

Query: 253 -EFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMP 300
                   F   +   +    LF      P      + + E+    W+ 
Sbjct: 100 FAEHGQFYFEDKNCRVW--GALFSCVSHGPF----ALQEDEVSEVCWLT 142

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A Length = 217

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 12/102 (11%)

Query: 215 CNPAFAGLWKLPTGFIDESEEIFK-GAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 273
               F G    P GF+D  +   + G  RE++EE G       V    +  +       +
Sbjct: 69  MQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRV 128

Query: 274 ---FFICMLKP--------LSTEIKVDDLEIKGAKWMPFMEF 304
              F+   L           +T  K   LE+ G   +P    
Sbjct: 129 VAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTL 170

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           + + ++ K C       W +P G +D  E+I     RE  EE     +
Sbjct: 140 QFVAIKRKDCGE-----WAIPGGMVDPGEKISATLKREFGEEALNSLQ 182

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 13/129 (10%)

Query: 184 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPT-GFIDESEEIFKGAVR 242
                   H      ++ N   ++LV +      A+ G+W     G     E      +R
Sbjct: 24  AHTADTRLHLA-FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIR 82

Query: 243 EVKEETGVDTEFVEVIAFRHAHNVAFQK-------SDLFFICMLKPLSTEIKVDDLEIKG 295
             + E GV+    E I     +               +F       L    +++D E+  
Sbjct: 83  RCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSAL----QINDDEVMD 138

Query: 296 AKWMPFMEF 304
            +W    + 
Sbjct: 139 YQWCDLADV 147

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 219 FAGLWKLPTGFIDESEEIFK-GAVREVKEETGVDTEFVEV 257
           F G    P GF+D  +   + G  RE++EE G     VEV
Sbjct: 64  FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEV 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.92
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.91
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	99.91
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.88
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.86
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.84
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.84
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.83
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.82
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.82
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.82
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.82
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.81
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.81
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.81
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.81
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.81
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.81
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.8
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.8
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.8
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.8
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.8
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.8
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.8
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.8
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.8
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.8
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.79
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.79
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.79
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.79
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.79
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.79
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.79
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.78
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.78
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.78
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.78
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.77
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.77
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.77
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.77
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.77
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.76
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.76
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.76
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.76
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.76
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.75
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.75
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.75
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.75
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.74
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.74
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.74
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.74
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.73
3f13_A	163	Putative nudix hydrolase family member; structural	99.73
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.73
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.72
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.71
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.68
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.68
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.68
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.65
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.64
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.58
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.56
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.55
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.53
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.49
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.42
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.34
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.32
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.24
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.83
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.78

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.92  E-value=9.6e-25  Score=201.90  Aligned_cols=167  Identities=17%  Similarity=0.278  Sum_probs=130.7

Q ss_pred             CCCCCcceeEEEEEEE---eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 017817          186 LPGNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH  262 (365)
Q Consensus       186 lP~~~~h~v~V~~vVi---n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~  262 (365)
                      .+.++.+.++|+++|+   +++++|||++|...  +..|.|.+|||++|+||++++||+||++||||+++...+.++.+.
T Consensus         6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~   83 (226)
T 2fb1_A            6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG   83 (226)
T ss_dssp             TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEEC
T ss_pred             cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeC
Confidence            4566777888988888   45689999998643  357899999999999999999999999999999999888888765


Q ss_pred             eccc-cCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc--cCCCCCCC
Q 017817          263 AHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQ  338 (365)
Q Consensus       263 ~~~~-~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~--y~g~~~~~  338 (365)
                      .... ..+ ...+.|++....  .....+.+|+.+++|++++++.++.+.+     ..+++.++++++.+  |.++....
T Consensus        84 ~~~r~~~~~~v~~~y~a~~~~--~~~~~~~~e~~~~~W~~~~el~~l~~dh-----~~il~~a~~rlr~~~~y~~i~~~l  156 (226)
T 2fb1_A           84 AIDRDPGERVVSIAYYALINI--NEYDRELVQKHNAYWVNINELPALIFDH-----PEMVDKAREMMKQKASVEPIGFNL  156 (226)
T ss_dssp             CTTSSSSSCEEEEEEEEECCT--TSSCHHHHHHTTEEEEETTSCCCBSTTH-----HHHHHHHHHHHHHHHHHSGGGGGG
T ss_pred             CCCcCCCceEEEEEEEEEecC--cccccCCccccceEEEEHHHhhhccCCH-----HHHHHHHHHHHHhhcccCchHHHh
Confidence            3322 112 234456665432  2222345788999999999999877654     57888888888776  89999999


Q ss_pred             CccCcc-hhhHHHHHHhcC--CCCCC
Q 017817          339 LVSAFD-GQTSSLYYNDSD--TQDTN  361 (365)
Q Consensus       339 l~~~f~-~~~~~ly~~~~~--~~~~~  361 (365)
                      +|..|+ .+++.+|+.+.+  .+++|
T Consensus       157 lp~~ftl~~l~~~ye~~~~~~~~~~n  182 (226)
T 2fb1_A          157 LPKLFTLSQLQSLYEAIYGEPMDKRN  182 (226)
T ss_dssp             SCSEEEHHHHHHHHHHHHTSCCCHHH
T ss_pred             CCccccHHHHHHHHHHHhCCCCCchh
Confidence            999999 999999999997  44444

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.91  E-value=2.7e-24  Score=200.71  Aligned_cols=167  Identities=21%  Similarity=0.362  Sum_probs=127.8

Q ss_pred             CCCcceeEEEEEEE---eCCCeEEEEeeecCCCCCCCceEeceeeecC--CCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 017817          188 GNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDE--SEEIFKGAVREVKEETGVDTEFVEVIAFRH  262 (365)
Q Consensus       188 ~~~~h~v~V~~vVi---n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~--GEs~~eAAiREv~EETGl~~~~~~ll~~~~  262 (365)
                      .++.+.++|+++|+   +++++|||++|...  +..|.|.+|||++++  ||++++||+||++||||+++...+.++.+.
T Consensus        17 ~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~--~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~   94 (240)
T 3gz5_A           17 AFKAQLLTVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVG   94 (240)
T ss_dssp             ----CEEEEEEEEEEEETTEEEEEEEECCSS--SSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEE
T ss_pred             ccCCCccEEEEEEEEEeCCCcEEEEEECcCC--CCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeC
Confidence            34455677877777   34579999998632  367899999999999  999999999999999999998888887665


Q ss_pred             eccc-cCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc--cCCCCCCC
Q 017817          263 AHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQ  338 (365)
Q Consensus       263 ~~~~-~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~--y~g~~~~~  338 (365)
                      .... ..+ ...++|++....  .......+|+.+++|++++++...++...+   +.+++.++++++.+  |.++....
T Consensus        95 ~~~r~~~~~~~~~~y~a~~~~--~~~~~~~~e~~~~~W~~~~el~~~~l~~dh---~~il~~a~~rlr~kl~y~~i~~~l  169 (240)
T 3gz5_A           95 NNSRDARGWSVTVCYTALMSY--QACQIQIASVSDVKWWPLADVLQMPLAFDH---LQLIEQARERLTQKALYSLVPGFA  169 (240)
T ss_dssp             ESSSSTTSCEEEEEEEEECCH--HHHHHHHTTCTTEEEEEHHHHTTSCCSTTH---HHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred             CCccCCCceEEEEEEEEEecc--cccCCCCCcccceEEecHHHcccCCcchhH---HHHHHHHHHHHHHhcccCcHHHHh
Confidence            5332 222 334555555432  223334678889999999999876666654   78899999998886  99999999


Q ss_pred             CccCcc-hhhHHHHHHhcC--CCCCC
Q 017817          339 LVSAFD-GQTSSLYYNDSD--TQDTN  361 (365)
Q Consensus       339 l~~~f~-~~~~~ly~~~~~--~~~~~  361 (365)
                      +|.+|+ .+++.+|+.+.+  .+++|
T Consensus       170 lp~~Ftl~~l~~~ye~i~g~~~~~~n  195 (240)
T 3gz5_A          170 LSEPFTLPELQHVHEVLLGKPIQGKS  195 (240)
T ss_dssp             SCSSBCHHHHHHHHHHHHTSCCCHHH
T ss_pred             CCCCccHHHHHHHHHHHcCCcCCHHH
Confidence            999999 999999999998  45444

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}

Probab=99.91  E-value=2.1e-25  Score=183.43  Aligned_cols=88  Identities=30%  Similarity=0.556  Sum_probs=81.1

Q ss_pred             cccccccccCCCcEEEcCCC----CCCChHHHHHHHHhhhhcceecCeEEEEEEeeccccccchHHHhcceeeecCCcce
Q 017817           97 LRVLDFFDDEYDGVVVDPKR----LPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEY  172 (365)
Q Consensus        97 ~~~~~~~~D~~~gv~v~~~~----~~~~~~~f~~~l~~sl~~W~~~~~r~vWl~l~~~~~~l~~~a~~~gF~~hh~~~~y  172 (365)
                      ..+|+|..|+||||+|+++.    .+.|+++|...|++||++||.+++++|||+||+.++++++.+++.||.||||+++|
T Consensus        22 ~~~l~g~~DrygGV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlklpi~~s~lIp~a~~~GF~fHHAe~dy  101 (113)
T 3fxt_A           22 SMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDS  101 (113)
T ss_dssp             CCCCCCEECTTSCEEEEHHHHTTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGGGHHHHHHTTCEEEEEEBTE
T ss_pred             cccccCCccCcCCEEEeCCccCCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEcCHHHhhhHHHHHHcCceeecCCCCe
Confidence            67999999999999999854    24699999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccccCCCC
Q 017817          173 LMLTYWIPDGPC  184 (365)
Q Consensus       173 ~~l~~wl~~~~~  184 (365)
                      +||++|||+.++
T Consensus       102 lmL~~WLpe~ps  113 (113)
T 3fxt_A          102 STLTLWLREGPS  113 (113)
T ss_dssp             EEEEEECCC---
T ss_pred             EEEEEecCcCCC
Confidence            999999998863

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.88  E-value=1.8e-21  Score=184.86  Aligned_cols=164  Identities=18%  Similarity=0.258  Sum_probs=122.3

Q ss_pred             CCCCCCcceeEEEEEEEe--C---CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce--eeEE
Q 017817          185 VLPGNATHQVGVGGFVIN--D---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEV  257 (365)
Q Consensus       185 ~lP~~~~h~v~V~~vVin--~---~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~--~~~l  257 (365)
                      .++.++.+.++|+++|+.  +   +++|||++|...  +..|.|.+|||++|+||++++||+||++||||+++.  .+..
T Consensus        31 ~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~  108 (273)
T 2fml_A           31 ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ  108 (273)
T ss_dssp             CCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred             hcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEE
Confidence            345667777888888875  2   358999998643  357899999999999999999999999999997654  3455


Q ss_pred             EEEEeeccc-cCc-cEEEEEEEEEecCCccccCCccceeeEEEEccccccc-----------------------CCCCcC
Q 017817          258 IAFRHAHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK-----------------------QPLIQG  312 (365)
Q Consensus       258 l~~~~~~~~-~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~-----------------------~~~~~~  312 (365)
                      ++.+..... ..+ ...++|++....  .. ....+|..+++|++++++.+                       .++...
T Consensus       109 l~~~~~~~r~~~~~~~~~~y~a~~~~--~~-~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~Lafd  185 (273)
T 2fml_A          109 LHSFSRPDRDPRGWVVTVSYLAFIGE--EP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFD  185 (273)
T ss_dssp             EEEECCTTSSTTSSEEEEEEEEECCC--CC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTT
T ss_pred             EEEEcCCCCCCCceEEEEEEEEEeCC--CC-CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCccccc
Confidence            554432221 112 344566665532  22 34567899999999997422                       234444


Q ss_pred             CchHHHHHHHHHHHHhcc--cCCCCCCCCccCcc-hhhHHHHHHhcC
Q 017817          313 DCMFKKVIDICIARLRKR--YCGLYPHQLVSAFD-GQTSSLYYNDSD  356 (365)
Q Consensus       313 ~~~~~~il~~~l~~lr~~--y~g~~~~~l~~~f~-~~~~~ly~~~~~  356 (365)
                      +   .+++..++++++.+  |.|+....||+.|| .++|.+|+.+.+
T Consensus       186 H---~~Il~~al~rlr~kl~y~~i~~~llp~~FTl~~l~~~ye~i~g  229 (273)
T 2fml_A          186 H---SEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLG  229 (273)
T ss_dssp             H---HHHHHHHHHHHHHHTTTCCGGGGGGCSCBCHHHHHHHHHHHHT
T ss_pred             H---HHHHHHHHHHHHHHhcCCcHHHHhCCccccHHHHHHHHHHHhC
Confidence            3   67899999998876  99999999999999 999999999987

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.86  E-value=3.5e-21  Score=173.74  Aligned_cols=144  Identities=34%  Similarity=0.581  Sum_probs=101.0

Q ss_pred             CCCCCCCCcceeEEEEEEEeC-CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE
Q 017817          183 PCVLPGNATHQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR  261 (365)
Q Consensus       183 ~~~lP~~~~h~v~V~~vVin~-~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~  261 (365)
                      .+.++.++.+.++|++++++. +++|||++++.   ...+.|.+|||++|+||++.+||+||++||||+++....+++..
T Consensus        16 ~~~~~~~~~~~v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~   92 (199)
T 3h95_A           16 ENLYFQSMSHQVGVAGAVFDESTRKILVVQDRN---KLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIR   92 (199)
T ss_dssp             ----------CCEEEEEEEETTTTEEEEEEESS---SSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_pred             cccccccCcccceEEEEEEeCCCCEEEEEEEcC---CCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEE
Confidence            345567778889998888885 58999999853   24789999999999999999999999999999999888887754


Q ss_pred             eec--cccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817          262 HAH--NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY  331 (365)
Q Consensus       262 ~~~--~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y  331 (365)
                      ..+  +.......++|++........+.++++|+.+++|++++++.++....  .+.+.++..++...+..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~--~~~~~~~~~~~~~~~~~~  162 (199)
T 3h95_A           93 QQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTT--PITSRVARLLLYGYREGF  162 (199)
T ss_dssp             ECC---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBC--HHHHHHHHHHHHHHHHCG
T ss_pred             eeecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcC--hHHHHHHHHHHhhhhcCC
Confidence            322  22334456778888766556666778999999999999999886433  356666666665554443

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.84  E-value=1e-20  Score=160.70  Aligned_cols=122  Identities=28%  Similarity=0.409  Sum_probs=89.4

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc---
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ---  269 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~---  269 (365)
                      .++++++|++ +++|||++++      .|.|.+|||++|+||++.+||+||++||||+++....+++.........+   
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~------~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~   76 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTP------SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERI   76 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECT------TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEE
T ss_pred             EEEEEEEEEE-CCEEEEEEeC------CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceE
Confidence            3567778776 5799999874      47899999999999999999999999999999988888775443222222   


Q ss_pred             -cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817          270 -KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  327 (365)
Q Consensus       270 -~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l  327 (365)
                       ....+|.|...  ++++.+ ++|+.+++|++++|+.++...+   ..+.+++.+++.+
T Consensus        77 ~~~~~~f~~~~~--~~~~~~-~~E~~~~~W~~~~e~~~~l~~~---~~r~il~~a~~l~  129 (134)
T 3i7u_A           77 FKTVKYYLMKYK--EGEPRP-SWEVKDAKFFPIKEAKKLLKYK---GDKEIFEKALKLK  129 (134)
T ss_dssp             EEEEEEEEEEEE--EECCCC-CTTSSEEEEEEHHHHHHHBCSH---HHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEEc--CCcCcC-ChhheEEEEEEHHHHhhhcCCh---HHHHHHHHHHHHH
Confidence             22345555543  234443 4789999999999998875443   2367777776544

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=7.1e-20  Score=157.36  Aligned_cols=130  Identities=19%  Similarity=0.274  Sum_probs=99.6

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      ..++|++++++.+++|||++|...+..++|.|.+|||++++||++.+||+||++||||+.+....+++............
T Consensus         7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~   86 (153)
T 3grn_A            7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVI   86 (153)
T ss_dssp             EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEE
T ss_pred             eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEE
Confidence            45678888998899999999975435578999999999999999999999999999999998888887765444443334


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCC-CCcCCchHHHHHHHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP-LIQGDCMFKKVIDICIARL  327 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~-~~~~~~~~~~il~~~l~~l  327 (365)
                      ..+|.+...  .+++.. .+|+.+++|++++++.+++ ++.   ..+.+++.+.+..
T Consensus        87 ~~~~~~~~~--~~~~~~-~~e~~~~~W~~~~el~~~~~~~~---~~~~~l~~l~~~~  137 (153)
T 3grn_A           87 AIVFDGGYV--VADVKL-SYEHIEYSWVSLEKILGMETLPA---YFRDFFERFDREN  137 (153)
T ss_dssp             EEEEEEEEC--CCCCCC-CTTEEEEEEECHHHHTTCSSSCH---HHHHHHHHHHHHH
T ss_pred             EEEEEEEec--CCcEec-CCCcceEEEEEHHHhhhcccchH---HHHHHHHHHhccc
Confidence            444544432  334433 4789999999999999987 655   4567777766543

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.83  E-value=1.4e-19  Score=155.83  Aligned_cols=135  Identities=21%  Similarity=0.260  Sum_probs=101.3

Q ss_pred             cceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCcc
Q 017817          191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK  270 (365)
Q Consensus       191 ~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~  270 (365)
                      .....|++++++.+++|||+++... + +.+.|.+|||++|+||++.+||+||++||||+++....+++.....   ...
T Consensus        18 ~~~~~v~~~i~~~~~~vLl~~r~~~-~-~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~~   92 (156)
T 3gg6_A           18 NVCYVVLAVFLSEQDEVLLIQEAKR-E-CRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG---PSW   92 (156)
T ss_dssp             TCEEEEEEECBCTTSEEEEEECCCT-T-STTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TTE
T ss_pred             ceEEEEEEEEEeCCCEEEEEEecCC-C-CCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CCE
Confidence            3445677788888999999999632 2 6899999999999999999999999999999999988888876532   233


Q ss_pred             EEEEEEEEEecCCccc-cCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCC
Q 017817          271 SDLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG  333 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i-~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g  333 (365)
                      ..++|.+......... ..+++|+.+++|++++++.++....   .+..++..+...++.+..|
T Consensus        93 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~~~~~~~p  153 (156)
T 3gg6_A           93 VRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAH---DILHLVELAAQYRQQARHP  153 (156)
T ss_dssp             EEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCT---HHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccch---hHHHHHHHHHHHhhcCCCc
Confidence            4566666654322221 2355789999999999998865433   4567788777777666444

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.82  E-value=1.9e-19  Score=152.37  Aligned_cols=124  Identities=19%  Similarity=0.199  Sum_probs=91.2

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCC--CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPA--FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~--~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      ..|++++.+ +++|||++|... ..  ++|.|.+|||++++||++.+||+||++||||+++....+++............
T Consensus         7 ~~v~~vi~~-~~~vLL~~r~~~-~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~   84 (140)
T 3gwy_A            7 EVVAAVIRL-GEKYLCVQRGQT-KFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEIT   84 (140)
T ss_dssp             EEEEEEEEE-TTEEEEEEC----------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEE
T ss_pred             EEEEEEEEe-CCEEEEEEecCC-CCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEE
Confidence            445566666 789999999643 33  67999999999999999999999999999999999888888765544444444


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  326 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~  326 (365)
                      ..+|.+...  ...  ++.+|+.+++|++++++.++++.+.+   +.+++.+.+.
T Consensus        85 ~~~f~~~~~--~~~--~~~~E~~~~~W~~~~el~~~~~~~~~---~~il~~~~~~  132 (140)
T 3gwy_A           85 MHAFLCHPV--GQR--YVLKEHIAAQWLSTREMAILDWAEAD---KPIVRKISEQ  132 (140)
T ss_dssp             EEEEEEEEC--CSC--CCCCSSCEEEEECHHHHTTSCBCGGG---HHHHHHHHC-
T ss_pred             EEEEEEEec--CCc--ccccccceeEeccHHHHhhCCCCccc---HHHHHHHHhC
Confidence            556666543  233  34578899999999999999988754   6667666543

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.82  E-value=1.3e-19  Score=156.45  Aligned_cols=137  Identities=23%  Similarity=0.417  Sum_probs=93.3

Q ss_pred             CCCCCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEE--E
Q 017817          181 DGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV--I  258 (365)
Q Consensus       181 ~~~~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~l--l  258 (365)
                      ..|..++..+.....+++++++.+++|||++|... ..+.|.|.+|||++|+||++.+||+||++||||+.+....+  +
T Consensus        17 ~gP~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~~-~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~   95 (158)
T 3hhj_A           17 QGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEG-KSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPL   95 (158)
T ss_dssp             ----------CEEEEEEEEEBCTTSEEEEEECCCT-TSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE
T ss_pred             CCCccCCCCCceEEEEEEEEEeCCCEEEEEEeCCC-CCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEE
Confidence            34455565556666677888888899999998644 34789999999999999999999999999999999877543  4


Q ss_pred             EEEeeccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          259 AFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       259 ~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      +..............+|.+..  ...  .++..|..+++|++++++.++++....   +.+++.+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~---~~il~~~~~  155 (158)
T 3hhj_A           96 TFASHGYETFHLLMPLYFCSH--YKG--VAQGREGQNLKWIFINDLDKYPMPEAD---KPLVQVLKN  155 (158)
T ss_dssp             EEEEEECSSCEEEEEEEEESC--CBS--CCCCTTSCEEEEEEGGGGGGSCCCTTT---HHHHHHHHH
T ss_pred             EEEeeccCCcEEEEEEEEEEE--CCC--ccCCccccceEEEcHHHHhhCCCCcch---HHHHHHHHH
Confidence            433333333333333444432  222  344678899999999999999887765   666666554

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.82  E-value=1.6e-19  Score=157.03  Aligned_cols=131  Identities=18%  Similarity=0.254  Sum_probs=86.0

Q ss_pred             CCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----
Q 017817          188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----  262 (365)
Q Consensus       188 ~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~-----  262 (365)
                      ..+.....+.+++++.+++|||++|......++|.|.+|||++++||++.+||+||++||||+++....++....     
T Consensus        22 ~~~~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~  101 (165)
T 3oga_A           22 SNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIR  101 (165)
T ss_dssp             --CCEEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEE
T ss_pred             CCCcceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeeccee
Confidence            333444556666777789999999875554578999999999999999999999999999999998777664321     


Q ss_pred             -eccccCc---cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHH
Q 017817          263 -AHNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI  322 (365)
Q Consensus       263 -~~~~~~~---~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~  322 (365)
                       .......   ...+++++........+.. ++|+.+++|++++++.++++.+.+   +.+++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~~---~~~l~~  161 (165)
T 3oga_A          102 IKTYADGRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALYDLNVAT---RHTLAL  161 (165)
T ss_dssp             EEEC--CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGSCBCHHH---HHHHHH
T ss_pred             eEecCCCCceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhCCCCHHH---HHHHHH
Confidence             1111111   1122333333333344433 478999999999999999887643   455543

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.82  E-value=1.1e-19  Score=157.39  Aligned_cols=122  Identities=20%  Similarity=0.365  Sum_probs=87.3

Q ss_pred             CCCCCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE
Q 017817          181 DGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF  260 (365)
Q Consensus       181 ~~~~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~  260 (365)
                      ..+..++..+.++++|++++++ +++|||++|... + +.+.|.+|||++|+||++.+||+||++||||+++....+++.
T Consensus        17 ~~p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~-~-~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   93 (157)
T 4dyw_A           17 QGPGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRA-P-EAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCV   93 (157)
T ss_dssp             ---------CCCEEEEEEEEEE-TTEEEEEEECSS-S-STTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEE
T ss_pred             CCCCCCCCCCCceeEEEEEEEE-CCEEEEEEecCC-C-CCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEE
Confidence            3455666667778889899988 689999999643 2 789999999999999999999999999999999998888877


Q ss_pred             EeeccccCc--cEEEEEEEEEecCCccccCCccceeeEEEEccccccc
Q 017817          261 RHAHNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK  306 (365)
Q Consensus       261 ~~~~~~~~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~  306 (365)
                      .........  ....+|.+..... .....+++|+.+++|++++++.+
T Consensus        94 ~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~  140 (157)
T 4dyw_A           94 VDHIDAANGEHWVAPVYLAHAFSG-EPRVVEPDRHEALGWFALDDLPQ  140 (157)
T ss_dssp             EEEEETTTTEEEEEEEEEESEEES-CCCCSCTTTEEEEEEEETTSCCS
T ss_pred             EEeeccCCCcEEEEEEEEEEEcCC-CcccCCCCcEeEEEEECHHHccc
Confidence            655443222  2334555544322 11223457899999999999988

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.81  E-value=1.8e-19  Score=152.47  Aligned_cols=128  Identities=24%  Similarity=0.331  Sum_probs=92.3

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeeccccCcc
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE--VIAFRHAHNVAFQK  270 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~--ll~~~~~~~~~~~~  270 (365)
                      ...+++++++.+++|||++|... ..++|.|.||||++++||++.+||+||++||||+.+....  .+............
T Consensus         8 ~~~~~~vi~~~~~~vLl~~r~~~-~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   86 (144)
T 3r03_A            8 LLVTAAALIDPDGRVLLAQRPPG-KSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHL   86 (144)
T ss_dssp             EEEEEEEEBCTTSCEEEEECCTT-SSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEE
T ss_pred             eEEEEEEEEcCCCEEEEEEeCCC-CCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEE
Confidence            34566777888899999998644 3478999999999999999999999999999999987753  33333333333333


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHh
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  328 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr  328 (365)
                      ...+|.+...  ..  .+...|..+++|++++++.++++....   +.+++.+.+...
T Consensus        87 ~~~~~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~~~  137 (144)
T 3r03_A           87 LMPLYACRSW--RG--RATAREGQTLAWVRAERLREYPMPPAD---LPLIPILQDWLE  137 (144)
T ss_dssp             EEEEEEECCC--BS--CCCCCSSCEEEEECGGGGGGSCCCTTT---TTHHHHHHHHC-
T ss_pred             EEEEEEEEec--CC--ccCCCCcceEEEEeHHHhccCCCCcch---HHHHHHHhCccc
Confidence            3344444332  22  234678889999999999999988765   566776665543

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.81  E-value=2.7e-19  Score=147.99  Aligned_cols=121  Identities=26%  Similarity=0.381  Sum_probs=92.5

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      ++|++++++.++++||++|..      |.|.+|||++++||++.+||+||++||||+++....+++..............
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREV   76 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT------SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC------CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEE
Confidence            578899999889999999852      78999999999999999999999999999999888888766444333333445


Q ss_pred             EEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817          274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  326 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~  326 (365)
                      +|.+.....  . ..++.|+.+++|++++++.++....   ..+.+++.+++.
T Consensus        77 ~~~~~~~~~--~-~~~~~e~~~~~w~~~~el~~~~~~~---~~~~~l~~~~~~  123 (126)
T 1vcd_A           77 HWFLMRGEG--A-PRLEEGMTGAGWFSPEEARALLAFP---EDLGLLEVALER  123 (126)
T ss_dssp             EEEEEEEES--C-CCCCTTCCEEEEECHHHHHHHBCSH---HHHHHHHHHHHH
T ss_pred             EEEEEEcCC--C-CCCCcceeeeEEcCHHHHHHhhcCh---hHHHHHHHHHHh
Confidence            566654332  2 2346788999999999999875544   345667666653

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.81  E-value=6.2e-19  Score=160.08  Aligned_cols=131  Identities=24%  Similarity=0.348  Sum_probs=101.8

Q ss_pred             CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---
Q 017817          189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN---  265 (365)
Q Consensus       189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~---  265 (365)
                      ++++.++|+++|++ +++|||+++.     ..|.|.+|||++|+||++.+||+||++||||+++....+++......   
T Consensus        64 ~~~~~~~v~~vv~~-~~~vLLv~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~  137 (205)
T 3q1p_A           64 YQTPKVDIRAVVFQ-NEKLLFVKEK-----SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQP  137 (205)
T ss_dssp             SCCCEEEEEEEEEE-TTEEEEEEC--------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSC
T ss_pred             CCCCcceEEEEEEE-CCEEEEEEEc-----CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCC
Confidence            55667888888887 6899999985     36899999999999999999999999999999999888888765431   


Q ss_pred             --ccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817          266 --VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY  331 (365)
Q Consensus       266 --~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y  331 (365)
                        .......++|.|....  +.+.. +.|+.+++|+++++++++.+....   +..+..+++..+...
T Consensus       138 ~~~~~~~~~~~~~~~~~~--~~~~~-~~E~~~~~w~~~~el~~l~~~~~~---~~~i~~~~~~~~~~~  199 (205)
T 3q1p_A          138 SPSATHVYKIFIGCEIIG--GEKKT-SIETEEVEFFGENELPNLSIARNT---EDQIKEMFAYMKDPQ  199 (205)
T ss_dssp             CCCSSCEEEEEEEEEEEE--ECCCC-CTTSCCEEEECTTSCCCBCTTTCC---HHHHHHHHHHHHCTT
T ss_pred             CCCCceEEEEEEEEEecC--CccCC-CCcceEEEEEeHHHhhhcCCCccH---HHHHHHHHHHHhCCC
Confidence              2233455677776643  33443 378999999999999988776654   677888888777654

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.81  E-value=6.2e-20  Score=157.02  Aligned_cols=115  Identities=15%  Similarity=0.090  Sum_probs=80.5

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      ..+|++++++.++++||+++. +.+.+.+.|++|||++|+||++++||+||++||||+++.....++.....+.......
T Consensus         5 ~~~v~vi~~~~~~~vLLv~~~-r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~   83 (145)
T 2w4e_A            5 PRAVFILPVTAQGEAVLIRQF-RYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVF   83 (145)
T ss_dssp             CEEEEEEEEETTSEEEEEEEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEE
T ss_pred             CCEEEEEEEcCCCEEEEEEEE-ecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceE
Confidence            357888889999999998764 3333566999999999999999999999999999999987777665433333333344


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      .+|++..... .....+++|+.+++|++++++.++..
T Consensus        84 ~~f~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~~  119 (145)
T 2w4e_A           84 YPLLALGVTL-GAAQLEDTETIERVVLPLAEVYRMLE  119 (145)
T ss_dssp             EEEEEEEEEE-C--------CEEEEEEEHHHHHHHHH
T ss_pred             EEEEEEeccc-CCCCCCCCCeEEEEEEeHHHHHHHHH
Confidence            5555553221 23445678999999999999987644

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.81  E-value=6.2e-19  Score=159.41  Aligned_cols=153  Identities=15%  Similarity=0.110  Sum_probs=110.0

Q ss_pred             hcceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeCCCeEE
Q 017817          133 IHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVL  208 (365)
Q Consensus       133 ~~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VL  208 (365)
                      ..|+....+.|    |+++......+++..   ...|...     .               ..+..+|++++++++ +||
T Consensus         8 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~---~~~~~~~-----~---------------~~~~~av~vl~~~~~-~vL   63 (198)
T 1vhz_A            8 QKPTILNVETVARSRLFTVESVDLEFSNGV---RRVYERM-----R---------------PTNREAVMIVPIVDD-HLI   63 (198)
T ss_dssp             CCCEEEEEEEEEECSSCEEEEEEEECTTSC---EEEEEEE-----C---------------CCCCCEEEEEEEETT-EEE
T ss_pred             CCcEEeeEEEEEECCEEEEEEEEEEcCCCC---EEEEEEE-----E---------------eCCCCEEEEEEEECC-EEE
Confidence            36888877777    889988888876632   1111111     0               001235777778777 999


Q ss_pred             EEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccccC
Q 017817          209 VVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKV  288 (365)
Q Consensus       209 Lvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~  288 (365)
                      |+++. +.+..++.|++|||++|+||++++||+||++||||+++..+..++.+...+........+|++..... .....
T Consensus        64 Lvrq~-r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~a~~~~~-~~~~~  141 (198)
T 1vhz_A           64 LIREY-AVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYP-ESLEG  141 (198)
T ss_dssp             EEEEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEEE-CCCCC
T ss_pred             EEEcc-cCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEEEEEEEeCCc-ccCCC
Confidence            99874 44456789999999999999999999999999999999988888877655554444455566654322 23345


Q ss_pred             CccceeeEEEEcccccccCCCCc
Q 017817          289 DDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       289 ~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      +++|..++.|++++++.++....
T Consensus       142 ~~~E~~~~~w~~~~el~~~~~~~  164 (198)
T 1vhz_A          142 DEPEPLPQVRWPLAHMMDLLEDP  164 (198)
T ss_dssp             CCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             CCCceEEEEEEEHHHHHHHHHcC
Confidence            67889999999999999875543

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.81  E-value=2.8e-19  Score=154.42  Aligned_cols=127  Identities=20%  Similarity=0.314  Sum_probs=89.9

Q ss_pred             EEEEEEE---------eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec-
Q 017817          195 GVGGFVI---------NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH-  264 (365)
Q Consensus       195 ~V~~vVi---------n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~-  264 (365)
                      ++|++++         |++.++||+|+++    .++.|.+|||++|+||++.+||+||++||||+++....++..+... 
T Consensus         5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~----~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   80 (155)
T 3u53_A            5 ACGLIIFRRCLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKREL   80 (155)
T ss_dssp             EEEEEEEEECCCSSSSSCSEEEEEEEESS----SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEE
T ss_pred             EeEEEEEccccccceeCCCcEEEEEEecC----CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeee
Confidence            4667776         4567899999864    3578999999999999999999999999999999877776543221 


Q ss_pred             ---cccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817          265 ---NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  329 (365)
Q Consensus       265 ---~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~  329 (365)
                         .........+|++........+. .++|+.+++|++++|+.++...+   -.+.++..+.+.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~ea~~~~~~~---~~~~~L~~a~~~L~~  144 (155)
T 3u53_A           81 NYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLCS  144 (155)
T ss_dssp             EEEETTEEEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHHCSH---HHHHHHHHHHHHHHH
T ss_pred             ecCCCcceeEEEEEEEEEeccCCccC-CCcceeEEEEeEHHHHHHHcCCH---HHHHHHHHHHHHHhC
Confidence               11122334555555544333433 35789999999999998764433   346677776665543

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.80  E-value=2.2e-20  Score=165.47  Aligned_cols=117  Identities=19%  Similarity=0.182  Sum_probs=88.4

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      .+|++++++.++++||+++.. .+.+++.|.+|||++|+||++.+||+||++||||+++.....++.....+........
T Consensus        42 ~~v~v~i~~~~~~vLL~~r~~-~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  120 (182)
T 2yvp_A           42 AASFVLPVTERGTALLVRQYR-HPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFH  120 (182)
T ss_dssp             EEEEEEEBCTTSEEEEEEEEE-GGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEEE
T ss_pred             CEEEEEEEcCCCEEEEEEecc-CCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEEE
Confidence            568888888899999998853 3346789999999999999999999999999999999888877655444333334445


Q ss_pred             EEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      +|++........+..+++|+.+++|++++++.++....
T Consensus       121 ~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  158 (182)
T 2yvp_A          121 PFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG  158 (182)
T ss_dssp             EEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred             EEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            55554222123344577899999999999998865443

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.80  E-value=5.9e-19  Score=148.38  Aligned_cols=123  Identities=20%  Similarity=0.235  Sum_probs=90.2

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      +++++++.+++|||++|... ..++|.|.+|||++++||++.+||+||++||||+.+.....++..............+|
T Consensus        11 ~~~~ii~~~~~vLl~~r~~~-~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   89 (140)
T 2rrk_A           11 VVAAIIERDGKILLAQRPAQ-SDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAW   89 (140)
T ss_dssp             EEEEEEEETTEEEEEECCSS-CSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEcCCEEEEEEcCCC-CCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEE
Confidence            44445577889999998533 34689999999999999999999999999999999988888776544333333333444


Q ss_pred             EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  326 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~  326 (365)
                      .+....  ..  ++..|+.+++|++++++.++++.+.   .+.+++.+++.
T Consensus        90 ~~~~~~--~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~  133 (140)
T 2rrk_A           90 HVPDFH--GT--LQAHEHQALVWCSPEEALQYPLAPA---DIPLLEAFMAL  133 (140)
T ss_dssp             EESEEE--EC--CCCSSCSCEEEECHHHHTTSCCCTT---HHHHHHHHHHH
T ss_pred             EEEeeC--CC--cCCCccceeEEeCHHHHhhCCCChh---HHHHHHHHHHH
Confidence            444321  22  3456788999999999999988764   36677776654

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.80  E-value=4.9e-19  Score=150.88  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=95.6

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      .+.+.+++++.+++|||++|... ..++|.|.+|||++|+||++.+||+||++||||+.+....+++.............
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~-~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   99 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPEN-NSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILI   99 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTT-STTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEEEeCCC-CCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEE
Confidence            34556667777799999999644 34789999999999999999999999999999999988887776544443333333


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  329 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~  329 (365)
                      .+|.+....  ..  ++.+|+.+++|++++++.++++...   .+.+++.+.+.++.
T Consensus       100 ~~~~~~~~~--~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~~  149 (153)
T 3ees_A          100 LFYEILYWK--GE--PRAKHHMMLEWIHPEELKHRNIPEA---NRKILHKIYKALGL  149 (153)
T ss_dssp             EEEEECEEE--SC--CCCSSSSEEEEECGGGGGGSCCCHH---HHTTHHHHHHHTTC
T ss_pred             EEEEEEECC--CC--cCCCccceEEEecHHHhhhCCCCcc---hHHHHHHHHHhhcc
Confidence            444444322  22  4567889999999999999887763   46677777665543

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.80  E-value=1.3e-18  Score=146.88  Aligned_cols=124  Identities=21%  Similarity=0.253  Sum_probs=90.7

Q ss_pred             CCcceeEEEEEEEe--CCCe--EEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec
Q 017817          189 NATHQVGVGGFVIN--DNNE--VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH  264 (365)
Q Consensus       189 ~~~h~v~V~~vVin--~~g~--VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~  264 (365)
                      |..+.++|++++++  ++++  +||++|...    ++.|.+|||++++||++.+||+||++||||+++....+++.+...
T Consensus         5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   80 (139)
T 2yyh_A            5 VKTPLLATDVIIRLWDGENFKGIVLIERKYP----PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDP   80 (139)
T ss_dssp             CCCCEEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCT
T ss_pred             ccCCeEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCC
Confidence            44556778888876  6787  999998532    234999999999999999999999999999999888888765542


Q ss_pred             ccc--CccEEEEEEEEEecCCccccCCccceeeEEEEcccccc--cCCCCcCCchHHHHHHHHHH
Q 017817          265 NVA--FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV--KQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       265 ~~~--~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~--~~~~~~~~~~~~~il~~~l~  325 (365)
                      ...  ......+|.|...   +++. ..+|+.+++|++++++.  .+.+.+     ++++..+++
T Consensus        81 ~~~~~~~~~~~~f~~~~~---~~~~-~~~e~~~~~W~~~~el~~~~l~~~~-----~~~l~~~l~  136 (139)
T 2yyh_A           81 ERDPRAHVVSVVWIGDAQ---GEPK-AGSDAKKVKVYRLEEIPLDKLVFDH-----KKIILDFLK  136 (139)
T ss_dssp             TSCTTSCEEEEEEEEEEE---SCCC-CCTTEEEEEEECTTSCCGGGBCTTH-----HHHHHHHHH
T ss_pred             CcCCCceEEEEEEEEecC---CccC-CCCCcceEEEEEHHHCCHhhcCCCH-----HHHHHHHHh
Confidence            221  2234456666652   2333 46789999999999999  665543     566666553

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.80  E-value=2e-19  Score=163.40  Aligned_cols=153  Identities=17%  Similarity=0.196  Sum_probs=100.7

Q ss_pred             hcceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeCCCeEE
Q 017817          133 IHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVL  208 (365)
Q Consensus       133 ~~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VL  208 (365)
                      ..|+..+++.|    |+++..+...+++..   ...+     +++                 .+..+|++++++.+++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~---~~~~-----~~~-----------------~~~~av~v~i~~~~~~vL   58 (207)
T 1mk1_A            4 HDFETISSETLHTGAIFALRRDQVRMPGGG---IVTR-----EVV-----------------EHFGAVAIVAMDDNGNIP   58 (207)
T ss_dssp             --CCEEEEEEEEECSSEEEEEEEEC--------CEEE-----EEE-----------------EECCEEEEEECCTTSEEE
T ss_pred             CCcEEEeEEEEEeCCEEEEEEEEEECCCCC---EEEE-----EEE-----------------eCCCEEEEEEEcCCCEEE
Confidence            56999888887    999999888887742   1111     111                 112467788888899999


Q ss_pred             EEeeecCCCCCCCceEeceeeec-CCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccc-
Q 017817          209 VVQEKYCNPAFAGLWKLPTGFID-ESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEI-  286 (365)
Q Consensus       209 Lvrr~~~~~~~~g~W~lPGG~ve-~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i-  286 (365)
                      |+++. +.+.+.+.|++|||++| +||++++||+||++||||+++.....++.+...+........+|++......... 
T Consensus        59 Lvrr~-r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  137 (207)
T 1mk1_A           59 MVYQY-RHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPE  137 (207)
T ss_dssp             EEEEE-ETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC--
T ss_pred             EEEee-cCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEEEEEEEEccccCCCCC
Confidence            99885 44456789999999999 9999999999999999999998888887654444333333455555543221111 


Q ss_pred             cCCccceeeEEEEcccccccCCCCc
Q 017817          287 KVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       287 ~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      ..+++|+.++.|++++++.++....
T Consensus       138 ~~~~~E~~~~~Wv~~~el~~~~~~~  162 (207)
T 1mk1_A          138 AHHEEADMTMGWYPIAEAARRVLRG  162 (207)
T ss_dssp             --------CEEEEEHHHHHHHHHTT
T ss_pred             CCCCCceEEEEEEEHHHHHHHHHcC
Confidence            2457789999999999999875544

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.80  E-value=3.3e-19  Score=155.10  Aligned_cols=128  Identities=16%  Similarity=0.199  Sum_probs=95.2

Q ss_pred             cceeEEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc
Q 017817          191 THQVGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ  269 (365)
Q Consensus       191 ~h~v~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~  269 (365)
                      ...+++.+++++++ ++|||++|. . ..+.|.|.+|||++++||++.+||+||++||||+++....+++.........+
T Consensus         8 ~~~~~v~~vi~~~~~~~vLL~~r~-~-~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   85 (161)
T 3exq_A            8 PVELVTMVMVTDPETQRVLVEDKV-N-VPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ   85 (161)
T ss_dssp             CEEEEEEEEEBCTTTCCEEEECCC-C-CTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS
T ss_pred             CceEEEEEEEEeCCCCEEEEEEcc-C-CCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCC
Confidence            34566777788776 799999986 3 34778899999999999999999999999999999998888887665543333


Q ss_pred             cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      .....+++........  +...|..+++|++++++.++++.+.   .+++++.+++
T Consensus        86 ~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~  136 (161)
T 3exq_A           86 HRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAAS---LPEFLQVFTG  136 (161)
T ss_dssp             SEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTT---HHHHHHHHTT
T ss_pred             eEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChH---HHHHHHHHhh
Confidence            3333444443322233  3456778999999999999888764   4667777665

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.80  E-value=1.2e-18  Score=149.71  Aligned_cols=119  Identities=24%  Similarity=0.328  Sum_probs=89.5

Q ss_pred             cceeEEEEEEEeCCCeEEEEeeecC--CCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-
Q 017817          191 THQVGVGGFVINDNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-  267 (365)
Q Consensus       191 ~h~v~V~~vVin~~g~VLLvrr~~~--~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~-  267 (365)
                      ....++++++++.++++||++|...  ...+++.|.+|||++|+||++.+||+||++||||+++....+++........ 
T Consensus        11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~   90 (159)
T 1sjy_A           11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG   90 (159)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred             eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence            3456788888888899999998531  3346799999999999999999999999999999999888888766543222 


Q ss_pred             CccEEEEEEEEEecCCcc-ccC-CccceeeEEEEcccccccCCCCc
Q 017817          268 FQKSDLFFICMLKPLSTE-IKV-DDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~~~-i~~-~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      ......+|.+...  .+. +.+ +++|+.++.|++++++.++....
T Consensus        91 ~~~~~~~f~~~~~--~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  134 (159)
T 1sjy_A           91 VLILRHVWLAEPE--PGQTLAPAFTDEIAEASFVSREDFAQLYAAG  134 (159)
T ss_dssp             CEEEEEEEEEEEC--SSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             ceEEEEEEEEEcc--CCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence            2334455555543  233 555 67899999999999998875543

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.80  E-value=7e-19  Score=147.79  Aligned_cols=126  Identities=21%  Similarity=0.269  Sum_probs=90.1

Q ss_pred             eEEEEEEEeC---CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE----EEEeeccc
Q 017817          194 VGVGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI----AFRHAHNV  266 (365)
Q Consensus       194 v~V~~vVin~---~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll----~~~~~~~~  266 (365)
                      .+|++++++.   +++|||++++.    .++.|.+|||++++||++.+||+||++||||+.++...++    +.......
T Consensus         4 ~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   79 (138)
T 1ktg_A            4 KAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK   79 (138)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET
T ss_pred             EEEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC
Confidence            5677888875   46899999852    4679999999999999999999999999999966555444    22222222


Q ss_pred             cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHh
Q 017817          267 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  328 (365)
Q Consensus       267 ~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr  328 (365)
                      .......+|.+.....  ....+++|+.+++|++++++.++....   ..+.+++.+.++++
T Consensus        80 ~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~l~  136 (138)
T 1ktg_A           80 GKPKSVKYWLAKLNNP--DDVQLSHEHQNWKWCELEDAIKIADYA---EMGSLLRKFSAFLA  136 (138)
T ss_dssp             TEEEEEEEEEEEECSC--CCCCCCTTEEEEEEECHHHHHHHHCCH---HHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEEecCC--cccCCCchhcEeEeccHHHHHHhhccc---hHHHHHHHHHHHhh
Confidence            2233455666665432  233457899999999999999976554   34667777776664

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.79  E-value=3.9e-19  Score=151.83  Aligned_cols=128  Identities=18%  Similarity=0.227  Sum_probs=89.3

Q ss_pred             eEEEEEEE---eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEee--cc-
Q 017817          194 VGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHA--HN-  265 (365)
Q Consensus       194 v~V~~vVi---n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~--~~-  265 (365)
                      .+|.++++   +++++|||++|..     .|.|.+|||++|+||++.+||+||++||||+++...  .+......  .. 
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   80 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHF   80 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESS-----SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGT
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcC-----CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceee
Confidence            34555554   4668999999862     489999999999999999999999999999998764  22222111  11 


Q ss_pred             ---ccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc
Q 017817          266 ---VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  330 (365)
Q Consensus       266 ---~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~  330 (365)
                         .......++|.+......+++.+ ++|+.+++|++++++.++...+   ..+.++..+.++++.+
T Consensus        81 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~l~~~  144 (149)
T 3son_A           81 SFNKPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWD---SNKTALYELNERLKNN  144 (149)
T ss_dssp             CSSSCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCH---HHHHHHHHHHHHHHTT
T ss_pred             ccCCceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCH---HHHHHHHHHHHHHhhc
Confidence               11122334555554322345554 5899999999999999987665   3477888888777654

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.79  E-value=1.2e-18  Score=153.68  Aligned_cols=127  Identities=15%  Similarity=0.203  Sum_probs=94.0

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      .++++++++.+++|||++|.......+|.|.+ |||++++||++.+||+||++||||+++.....++.+...........
T Consensus        38 ~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  117 (180)
T 2fkb_A           38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG  117 (180)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEE
Confidence            46778888888999999886544445889999 99999999999999999999999999877777776554433323333


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccC--CCCcCCchHHHHHHHHHHH
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ--PLIQGDCMFKKVIDICIAR  326 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~--~~~~~~~~~~~il~~~l~~  326 (365)
                      .+|.+.   ....+.++++|+.+++|++++++.++  ++.+   ....++..+++.
T Consensus       118 ~~f~~~---~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~---~~~~~l~~~~~~  167 (180)
T 2fkb_A          118 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARCDEFTP---DSLKALALWMKR  167 (180)
T ss_dssp             EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTGGGBCH---HHHHHHHHHHHH
T ss_pred             EEEEEe---cCCCcCCChhHhheEEEecHHHHHHHHHHhCC---cHHHHHHHHHHh
Confidence            445554   23455566789999999999999987  4443   234556555543

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.79  E-value=2.3e-19  Score=159.94  Aligned_cols=134  Identities=16%  Similarity=0.238  Sum_probs=96.7

Q ss_pred             eEEEEEEEe--C-----CCeEEEEeeec-----CCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE
Q 017817          194 VGVGGFVIN--D-----NNEVLVVQEKY-----CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR  261 (365)
Q Consensus       194 v~V~~vVin--~-----~g~VLLvrr~~-----~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~  261 (365)
                      ++|+++|+.  +     +++|||++|..     ......|.|.+|||++|+||++.+||+||++||||+++....+++.+
T Consensus        28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~  107 (187)
T 3i9x_A           28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF  107 (187)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred             ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence            556665554  2     36899999842     12347899999999999999999999999999999999988988876


Q ss_pred             eeccccC-c-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc
Q 017817          262 HAHNVAF-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  330 (365)
Q Consensus       262 ~~~~~~~-~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~  330 (365)
                      ....... + ....+|++.............+|+.+++|++++++.++++...+   +.+|..++++++..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~---~~il~~a~~~l~~~  175 (187)
T 3i9x_A          108 DKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDH---LDMLKKAFSAITEE  175 (187)
T ss_dssp             CCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTH---HHHHHHHHHHHHHH
T ss_pred             cCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccH---HHHHHHHHHHHHhh
Confidence            5433221 1 23344444433211111234678889999999999988777754   77888888888765

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.79  E-value=1.5e-18  Score=151.75  Aligned_cols=133  Identities=24%  Similarity=0.358  Sum_probs=95.1

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      ..++|++++++ +++|||++|..    ..+.|.+|||++|+||++.+||+||++||||+++....+++............
T Consensus        22 ~~~~v~~ii~~-~~~vLL~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   96 (171)
T 3id9_A           22 MQVRVTGILIE-DEKVLLVKQKV----ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLL   96 (171)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECSS----TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEE
T ss_pred             eEEEEEEEEEE-CCEEEEEEEEC----CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCcEE
Confidence            34667777776 58999999853    37899999999999999999999999999999998888888776655444445


Q ss_pred             EEEEEEEEecCCcccc-----CCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCCCC
Q 017817          272 DLFFICMLKPLSTEIK-----VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGLY  335 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~-----~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g~~  335 (365)
                      .++|.+....  +++.     .+.+|+.+++|++++++.++++....   +.+++.++.. ...+.++.
T Consensus        97 ~~~~~~~~~~--~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~---~~~l~~~~~~-~~~~~~l~  159 (171)
T 3id9_A           97 HITFLLERIE--GEITLPSNEFDHNPIHDVQMVPINELSYYGFSETF---INLISGGLAN-AGSYQGLK  159 (171)
T ss_dssp             EEEEEEEEC---------------CCCCCEEEEETGGGGGGTCCTTC---SHHHHHGGGG-TTCBCCC-
T ss_pred             EEEEEEEEcC--CcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHH---HHHHHHhhcc-ccceeccc
Confidence            5566665432  2222     35688999999999999999887754   4556665432 22344444

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.79  E-value=1.4e-18  Score=152.32  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=82.3

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      .+|++++++ ++++||+++. +.+.+++.|.+|||++|+||++++||+||++||||+ +.....++.....+........
T Consensus        35 ~~v~vii~~-~~~vLL~~~~-r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~~  111 (170)
T 1v8y_A           35 PAVAVIALR-EGRMLFVRQM-RPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKTH  111 (170)
T ss_dssp             CEEEEEEEE-TTEEEEEECC-BTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEEE
T ss_pred             CeEEEEEEE-CCEEEEEEEE-eCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEEE
Confidence            468888888 8999999874 333578899999999999999999999999999999 8888888766544444344555


Q ss_pred             EEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      +|++..... .....+++|+.+++|++++++.++....
T Consensus       112 ~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~  148 (170)
T 1v8y_A          112 VFLAENLKE-VEAHPDEDEAIEVVWMRPEEALERHQRG  148 (170)
T ss_dssp             EEEEEEEEE-CC--------CEEEEECHHHHHHHHHTT
T ss_pred             EEEEEeccc-cCCCCCCCceEEEEEEEHHHHHHHHHCC
Confidence            666654321 3334467889999999999998865433

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.79  E-value=1.3e-18  Score=150.58  Aligned_cols=122  Identities=21%  Similarity=0.208  Sum_probs=86.4

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe----------
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH----------  262 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~----------  262 (365)
                      ..+|++++++ +++|||++|+     ..|.|.+|||++|+||++.+||+||++||||+++....+++...          
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (159)
T 3f6a_A            6 HFTVSVFIVC-KDKVLLHLHK-----KAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEK   79 (159)
T ss_dssp             CEEEEEEEEE-TTEEEEEECS-----SSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCE
T ss_pred             eEEEEEEEEE-CCEEEEEEcC-----CCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccc
Confidence            3557778887 6899999985     36899999999999999999999999999999988766653210          


Q ss_pred             --e-------ccccCc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817          263 --A-------HNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  324 (365)
Q Consensus       263 --~-------~~~~~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l  324 (365)
                        .       +.....  ...++|.|..  ..+.+.++++|+.+++|++++++.++++.+.  .++.+.+.+.
T Consensus        80 ~~~~p~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~--~~~~l~~~~~  148 (159)
T 3f6a_A           80 LLINPIHTILGDVSPNHSHIDFVYYATT--TSFETSPEIGESKILKWYSKEDLKNAHNIQE--NILVMATEAL  148 (159)
T ss_dssp             EECCCSEEEEECSSSSSCEEEEEEEEEC--SCSCCCCCTTSCCCEEEECSSSSTTCSSSCH--HHHHHHHHHH
T ss_pred             cccCccccccccCCCCceEEEEEEEEEe--CCCCcCCCCCcccceEEeeHHHHhhCcCCCh--hHHHHHHHHH
Confidence              0       000011  2234455543  3455555678999999999999999885553  2344444443

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.79  E-value=2.3e-18  Score=148.17  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=86.1

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccccC-
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNVAF-  268 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~--~~~ll~~~~~~~~~~-  268 (365)
                      +.++|++++++.+++|||++|...+  ..|.|.+|||++++||++.+||+||++||||+.+.  ...+++......... 
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~~--~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   94 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF   94 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSS--STTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBT
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCCC--CCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccc
Confidence            3477888999888999999996432  58999999999999999999999999999999953  566666543322111 


Q ss_pred             -------ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          269 -------QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       269 -------~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                             .....+|.+..  ...++..+.+|+.+++|++++++.++++.+
T Consensus        95 ~~~~~~~~~~~~~f~~~~--~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  142 (160)
T 1rya_A           95 SGTDFTTHYVVLGFRFRV--SEEELLLPDEQHDDYRWLTSDALLASDNVH  142 (160)
T ss_dssp             TBSSSCEEEEEEEEEEEC--CGGGCCCCSSSEEEEEEECHHHHHHCTTBC
T ss_pred             cCCCcCcEEEEEEEEEEc--CccccccCCCccceEEEecHHHHhhccccC
Confidence                   12233444443  234455567899999999999999987654

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.78  E-value=2.5e-18  Score=150.50  Aligned_cols=129  Identities=20%  Similarity=0.314  Sum_probs=92.2

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee-----ccc
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA-----HNV  266 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~-----~~~  266 (365)
                      .+.+|++++++.+++|||++|.     ..+.|.+|||++++||++.+||+||++||||+++....+++....     .+.
T Consensus         7 ~~~~v~~~i~~~~~~vLl~~r~-----~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~   81 (164)
T 2kdv_A            7 YRPNVGIVICNRQGQVMWARRF-----GQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPK   81 (164)
T ss_dssp             EEEEEEEEEECTTSEEEEEEET-----TCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCT
T ss_pred             CCcEEEEEEEccCCEEEEEEEc-----CCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCc
Confidence            4567888999988999999885     368999999999999999999999999999999988888776421     111


Q ss_pred             ----------cCccEEEEEEEEEecCCccccCC---ccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          267 ----------AFQKSDLFFICMLKPLSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       267 ----------~~~~~~~~f~~~l~~~~~~i~~~---~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                                ..+....+|++........+.++   ..|+.+++|++++++.+........+++.++..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~  153 (164)
T 2kdv_A           82 RLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFAS  153 (164)
T ss_dssp             TTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             ceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence                      11224567777764433334433   358999999999998765443333345555544443

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.78  E-value=2.8e-18  Score=155.88  Aligned_cols=131  Identities=26%  Similarity=0.489  Sum_probs=100.1

Q ss_pred             CCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc-
Q 017817          188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV-  266 (365)
Q Consensus       188 ~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~-  266 (365)
                      .|+++.++|.++|+++ ++|||++|.      .+.|.+|||++|+||++.+||+||++||||+++....+++....... 
T Consensus        65 ~y~~~~~~v~~vv~~~-~~vLLvrr~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~  137 (206)
T 3o8s_A           65 GYQTPKLDTRAAIFQE-DKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNN  137 (206)
T ss_dssp             ---CCEEEEEEEEEET-TEEEEEECT------TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHC
T ss_pred             CCCCCCccEEEEEEEC-CEEEEEEec------CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccC
Confidence            3566678888888875 899999984      68999999999999999999999999999999998888887652211 


Q ss_pred             ----cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817          267 ----AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY  331 (365)
Q Consensus       267 ----~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y  331 (365)
                          ......++|.|....  +.+.. +.|+.+++|+++++++++++....   ++++..+++..+...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~E~~~~~w~~~~el~~l~~~~~~---~~~l~~~~~~~~~~~  200 (206)
T 3o8s_A          138 PAKSAHRVTKVFILCRLLG--GEFQP-NSETVASGFFSLDDLPPLYLGKNT---AEQLALCLEASRSEH  200 (206)
T ss_dssp             C-----CEEEEEEEEEEEE--ECCCC-CSSCSEEEEECTTSCCCBCTTTCC---HHHHHHHHHHHHCSS
T ss_pred             CCCCCceEEEEEEEEEecC--CeecC-CCCceEEEEEeHHHhhhccCCCch---HHHHHHHHHHHHCCC
Confidence                223445666676543  33333 378999999999999998876643   777888888777653

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.78  E-value=8.5e-19  Score=159.82  Aligned_cols=155  Identities=14%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             hcceecCeEEE---EEEeeccccc--cchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEe-CCCe
Q 017817          133 IHWRRMNKKGI---WLKLPLENAE--LVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIN-DNNE  206 (365)
Q Consensus       133 ~~W~~~~~r~v---Wl~l~~~~~~--l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin-~~g~  206 (365)
                      ..|+..+++.|   |+++......  +++........+     +++                 .+..+|++++++ ++++
T Consensus        14 ~~~~~~~~~~v~~g~~~v~~~~~~~~~~~g~~~~~~~r-----~~~-----------------~~~~av~vl~~~~~~~~   71 (209)
T 1g0s_A           14 NDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSHEVRR-----EIF-----------------ERGHAAVLLPFDPVRDE   71 (209)
T ss_dssp             GGEEEEEEEEEEESSSEEEEEEEEEBCTTSCBCCCEEE-----EEE-----------------ECCCEEEEEEEETTTTE
T ss_pred             CCcEEEEEEEEEeeeEEEEEEEEEEEcCCCCcceEEEE-----EEE-----------------eCCCEEEEEEEECCCCE
Confidence            46888887776   8777776654  444210011111     111                 112468888888 5789


Q ss_pred             EEEEeeecCCCCC-----CCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEec
Q 017817          207 VLVVQEKYCNPAF-----AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKP  281 (365)
Q Consensus       207 VLLvrr~~~~~~~-----~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~  281 (365)
                      |||+++. +++..     ++.|++|||++|+||++++||+||++||||+.+..+..++.+...++.......+|++....
T Consensus        72 vLLvrq~-R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~~~~~~~~f~a~~~~  150 (209)
T 1g0s_A           72 VVLIEQI-RIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDA  150 (209)
T ss_dssp             EEEEEEE-CGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTBCCEEEEEEEECCG
T ss_pred             EEEEEee-cccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCccCcEEEEEEEEEcc
Confidence            9999873 33322     57899999999999999999999999999999988888877655555444455566666422


Q ss_pred             C--Cc-cccCCccceeeEEEEcccccccCCCC
Q 017817          282 L--ST-EIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       282 ~--~~-~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      .  .+ ....+++|..++.|++++++.++...
T Consensus       151 ~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~  182 (209)
T 1g0s_A          151 TTASGIHGLADENEDIRVHVVSREQAYQWVEE  182 (209)
T ss_dssp             GGCC--------CCSCEEEEEEHHHHHHHHHT
T ss_pred             ccccCCCCCCCCCcEEEEEEEEHHHHHHHHHc
Confidence            1  11 12346778889999999999886443

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.78  E-value=2.6e-18  Score=146.80  Aligned_cols=128  Identities=20%  Similarity=0.199  Sum_probs=86.4

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc--c
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--K  270 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~--~  270 (365)
                      .++|.+++ +.+++|||++|... .. ++.|.+|||++++||++.+||+||++||||+++....+++.........+  .
T Consensus         8 ~~~v~~ii-~~~~~vLl~~r~~~-~~-~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (153)
T 2b0v_A            8 NVTVAAVI-EQDDKYLLVEEIPR-GT-AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY   84 (153)
T ss_dssp             EEEEEEEC-EETTEEEEEEECSS-SS-CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred             CEEEEEEE-eeCCEEEEEEEcCC-CC-CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEE
Confidence            34555544 46789999998533 23 78999999999999999999999999999999988888876543222112  2


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  324 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l  324 (365)
                      ...+|.+..... ......++|+.+++|++++++.++........+++++..++
T Consensus        85 ~~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~~  137 (153)
T 2b0v_A           85 LRFTFSGQVVSF-DPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYH  137 (153)
T ss_dssp             EEEEEEEEEEEE-CTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHH
T ss_pred             EEEEEEEEeCCC-CCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHHH
Confidence            223455544321 11234567899999999999998622222224455554443

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.77  E-value=4.4e-18  Score=161.37  Aligned_cols=138  Identities=19%  Similarity=0.270  Sum_probs=103.2

Q ss_pred             CCCCCCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 017817          184 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA  263 (365)
Q Consensus       184 ~~lP~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~  263 (365)
                      |....||...++|.+++ +.+++|||+++...   ..|.|.+|||++|+||++++||+||++||||+++....+++....
T Consensus       131 C~~~~yp~~~~~viv~v-~~~~~vLL~rr~~~---~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~  206 (269)
T 1vk6_A          131 CRERYYPQIAPCIIVAI-RRDDSILLAQHTRH---RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW  206 (269)
T ss_dssp             SSCEECCCCEEEEEEEE-EETTEEEEEEETTT---CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred             CCCEecCCCCcEEEEEE-EeCCEEEEEEecCC---CCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEec
Confidence            34455666666665444 45689999998532   268999999999999999999999999999999998888876533


Q ss_pred             ccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817          264 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY  331 (365)
Q Consensus       264 ~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y  331 (365)
                      ...  ....++|.+...  ++++.++++|+.+++|++++|++.++...  .+.+.+++.++++++..|
T Consensus       207 ~~~--~~~~~~f~a~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~--si~~~li~~~l~~~r~~~  268 (269)
T 1vk6_A          207 PFP--QSLMTAFMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPG--TVARRLIEDTVAMCRAEY  268 (269)
T ss_dssp             ETT--EEEEEEEEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTT--SHHHHHHHHHHHHHHHCC
T ss_pred             CCC--CEEEEEEEEEEC--CCCcCCCCcceEEEEEEEHHHhhhcccCc--HHHHHHHHHHHHHHHhhc
Confidence            211  223455555543  34566677899999999999999875543  477889999998887654

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.77  E-value=7.4e-18  Score=144.31  Aligned_cols=126  Identities=21%  Similarity=0.346  Sum_probs=88.2

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-ccCccE
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-VAFQKS  271 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~-~~~~~~  271 (365)
                      .++|++++ +.+++|||++|. .  ...+.|.+|||++|+||++.+||+||++||||+++....+++...... ......
T Consensus         5 ~~~v~~ii-~~~~~vLl~~r~-~--~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T 3shd_A            5 HVTVACVV-HAEGKFLVVEET-I--NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFL   80 (153)
T ss_dssp             EEEEEEEE-EETTEEEEEEEE-E--TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEE
T ss_pred             ceEEEEEE-EeCCEEEEEEec-C--CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEE
Confidence            35555554 457899999985 2  257889999999999999999999999999999999888887764332 222334


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  324 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l  324 (365)
                      ..+|.+..... ....++++|+.+++|++++++...+... ....+.++..++
T Consensus        81 ~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~l~~~~  131 (153)
T 3shd_A           81 RFLFAIELEQI-CPTQPHDSDIDCCRWVSAEEILQASNLR-SPLVAESIRCYQ  131 (153)
T ss_dssp             EEEEEEECSSC-CCCCCCSTTCCEEEEECHHHHHTCSCBS-STHHHHHHHHHH
T ss_pred             EEEEEEEcccc-CcCCCCcccceeeEEecHHHhhcccccc-CchHHHHHHHHH
Confidence            45666655322 2245567899999999999994332222 124445555554

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.77  E-value=5.5e-18  Score=150.02  Aligned_cols=126  Identities=16%  Similarity=0.148  Sum_probs=89.3

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      +++++ +++++.+++|||++|...  .+.|.|.+|||++|+||++.+||+||++||||+++....+++............
T Consensus        24 ~~~~~-~~vi~~~~~vLL~~r~~~--~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  100 (176)
T 3q93_A           24 SRLYT-LVLVLQPQRVLLGMKKRG--FGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL  100 (176)
T ss_dssp             EEEEE-EEEEECSSEEEEEEECSS--TTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCE
T ss_pred             CcEEE-EEEEEeCCEEEEEEEcCC--CCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcE
Confidence            34434 555667899999998533  368999999999999999999999999999999998888888765443332222


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      ...+++......+.+  ...|..+++|++++++.++++.+.+   +.++..+++
T Consensus       101 ~~~~~f~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~  149 (176)
T 3q93_A          101 MDVHVFCTDSIQGTP--VESDEMRPCWFQLDQIPFKDMWPDD---SYWFPLLLQ  149 (176)
T ss_dssp             EEEEEEEESCEESCC--CCCSSEEEEEEETTCCCGGGBCTTH---HHHHHHHHT
T ss_pred             EEEEEEEEECCCCCc--CCCcceeeEEeeHHHccccccCcch---HHHHHHHHc
Confidence            222333332222222  3456678899999999998887753   556666553

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.77  E-value=1.7e-18  Score=154.86  Aligned_cols=130  Identities=15%  Similarity=0.108  Sum_probs=88.8

Q ss_pred             cccCCCCCCCCCCcceeEEEEEEEeCCC--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee
Q 017817          178 WIPDGPCVLPGNATHQVGVGGFVINDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV  255 (365)
Q Consensus       178 wl~~~~~~lP~~~~h~v~V~~vVin~~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~  255 (365)
                      |+...+...+..+..+.++++++++.++  +|||++|.......+|.|.+|||++|+||++++||+||++||||+++...
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~   98 (194)
T 1nqz_A           19 WLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAV   98 (194)
T ss_dssp             CBCC----------CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGC
T ss_pred             HHhhcChhhccCCCCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccce
Confidence            3443333334445566677777778777  99999986543346899999999999999999999999999999999988


Q ss_pred             EEEEEEeeccccCccEEEEEEEEEecCCcc-ccCCccceeeEEEEccccc-ccCC
Q 017817          256 EVIAFRHAHNVAFQKSDLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEF-VKQP  308 (365)
Q Consensus       256 ~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~-i~~~~~Ei~~~~Wv~leEl-~~~~  308 (365)
                      .+++.........+....+|++.... ..+ ...+++|+.+++|++++++ .+..
T Consensus        99 ~~l~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A           99 TLLGELDDVFTPVGFHVTPVLGRIAP-EALDTLRVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             EEEEECCCEEETTTEEEEEEEEEECG-GGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             EEEEEccCccCCCCeEEEEEEEEecC-CccccCCCccceeEEEEEEHHHhccCCC
Confidence            88876654444444445566666532 223 4456789999999999999 7643

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.77  E-value=1.3e-17  Score=149.18  Aligned_cols=130  Identities=20%  Similarity=0.302  Sum_probs=93.8

Q ss_pred             CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC
Q 017817          189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF  268 (365)
Q Consensus       189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~  268 (365)
                      +..+.++|++++++ +++|||++|...+  ..+.|.+|||++|+||++++||+||++||||+++....+++..... . .
T Consensus        36 ~~~~~~~v~~ii~~-~~~vLL~~r~~~~--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~-~-~  110 (189)
T 3cng_A           36 YQNPKVIVGCIPEW-ENKVLLCKRAIAP--YRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLP-H-I  110 (189)
T ss_dssp             CCCCEEEEEEEEEE-TTEEEEEEESSSS--STTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEG-G-G
T ss_pred             CCCCceEEEEEEEe-CCEEEEEEccCCC--CCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEecC-C-C
Confidence            33445678778877 7899999986432  4789999999999999999999999999999999877777664332 1 2


Q ss_pred             ccEEEEEEEEEecCCccccCCccceeeEEEEcccccc--cCCCCcCCchHHHHHHHHHHHHhcc
Q 017817          269 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV--KQPLIQGDCMFKKVIDICIARLRKR  330 (365)
Q Consensus       269 ~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~--~~~~~~~~~~~~~il~~~l~~lr~~  330 (365)
                      ....++|.+...  ...+. ..+|+.+++|++++++.  .+.++    ..+.++..+++..+..
T Consensus       111 ~~~~~~f~~~~~--~~~~~-~~~E~~~~~W~~~~el~~~~l~~~----~~~~~l~~~l~~~~~~  167 (189)
T 3cng_A          111 SQVYMLFRAKLL--DLDFF-PGIESLEVRLFGEQEIPWNDIAFR----VIHDPLKRYMEERHHG  167 (189)
T ss_dssp             TEEEEEEEEEEC--CSCCC-CCTTEEEEEEECTTTCCGGGBSCH----HHHHHHHHHHHHHHHS
T ss_pred             cEEEEEEEEEeC--CCccC-CCccceeEEEECHHHcCcccccCh----HHHHHHHHHHHhccCC
Confidence            334455666543  23333 36789999999999998  44332    3456677776655544

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.76  E-value=2.4e-18  Score=156.86  Aligned_cols=159  Identities=16%  Similarity=0.111  Sum_probs=104.4

Q ss_pred             cceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeC--CCeE
Q 017817          134 HWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIND--NNEV  207 (365)
Q Consensus       134 ~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~--~g~V  207 (365)
                      .|+....+.+    |+++......+++..   ...|..+...             ..+......++|.+++.+.  +++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---~~~~~~v~~~-------------~~~~~~~~av~v~~v~~~~~~~~~v   79 (212)
T 2dsc_A           16 KQYIISEELISEGKWVKLEKTTYMDPTGK---TRTWESVKRT-------------TRKEQTADGVAVIPVLQRTLHYECI   79 (212)
T ss_dssp             CCEEEEEEEEEECSSEEEEEEEEECTTSC---EEEEEEEEET-------------TCCTTSCSEEEEEEEEECTTSCCEE
T ss_pred             CceEeeEEEEeeCCEEEEEEEEEECCCCC---EEEEEEEEee-------------ccCCCCCCEEEEEEEEeCCCCCcEE
Confidence            7999888777    999999998888732   1111111000             0000011223333334443  2589


Q ss_pred             EEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCc---
Q 017817          208 LVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLST---  284 (365)
Q Consensus       208 LLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~---  284 (365)
                      ||+++. +++..++.|++|||++|+||++++||+||++||||+++....+++.....+........+|++.......   
T Consensus        80 lLv~q~-R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  158 (212)
T 2dsc_A           80 VLVKQF-RPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENA  158 (212)
T ss_dssp             EEEEEE-EGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGGGS
T ss_pred             EEEEee-cCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCcccccc
Confidence            999873 4334567899999999999999999999999999999988777655444444334444555555433211   


Q ss_pred             --cccCCccceeeEEEEcccccccCCC
Q 017817          285 --EIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       285 --~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                        ...++++|+.++.|++++++.++..
T Consensus       159 ~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          159 RPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             SCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             CCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence              3345678999999999999987543

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.76  E-value=1.9e-18  Score=149.05  Aligned_cols=128  Identities=20%  Similarity=0.318  Sum_probs=88.6

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-Eeeccc-----
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-RHAHNV-----  266 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-~~~~~~-----  266 (365)
                      +.+|++++++.+++|||++|..    .+|.|.+|||++|+||++++||+||++||||+++........ ...+..     
T Consensus        14 ~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   89 (165)
T 1f3y_A           14 RRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVR   89 (165)
T ss_dssp             CCEEEEEEECTTSCEEEEEETT----EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHH
T ss_pred             eeeEEEEEECCCCcEEEEecCC----CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCcccc
Confidence            4568888999899999999852    358999999999999999999999999999998753221110 001100     


Q ss_pred             ----------cCccEEEEEEEEEecCCccccC-----CccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHh
Q 017817          267 ----------AFQKSDLFFICMLKPLSTEIKV-----DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  328 (365)
Q Consensus       267 ----------~~~~~~~~f~~~l~~~~~~i~~-----~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr  328 (365)
                                ..+....+|++.......++.+     +++|+.+++|++++++.++.....    ..+++.+++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~----~~~~~~~~~~l~  162 (165)
T 1f3y_A           90 EKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFK----KPVYKEVLSVFA  162 (165)
T ss_dssp             HHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGG----HHHHHHHHHHHG
T ss_pred             ccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhh----HHHHHHHHHHhh
Confidence                      0122456777776543333433     367899999999999999765543    345555555544

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.76  E-value=9e-18  Score=150.96  Aligned_cols=135  Identities=19%  Similarity=0.318  Sum_probs=87.5

Q ss_pred             cceeEEEEEEEeCCC-eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCc-ceeeE----EEEEEeec
Q 017817          191 THQVGVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD-TEFVE----VIAFRHAH  264 (365)
Q Consensus       191 ~h~v~V~~vVin~~g-~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~-~~~~~----ll~~~~~~  264 (365)
                      ...+++++++++.++ +|||++++     ..|.|.+|||++|+||++.+||+||++||||++ +....    .+......
T Consensus        43 ~~h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  117 (197)
T 3fcm_A           43 IAHLTSSAFAVNKERNKFLMIHHN-----IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVN  117 (197)
T ss_dssp             SEEEEEEEEEECTTSCEEEEEEET-----TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEEC
T ss_pred             CccEEEEEEEEECCCCEEEEEEec-----CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeec
Confidence            344567788888765 99999985     467999999999999999999999999999998 44211    11111111


Q ss_pred             c-cc-----Cc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCCC
Q 017817          265 N-VA-----FQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGL  334 (365)
Q Consensus       265 ~-~~-----~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g~  334 (365)
                      . ..     ..  ...++|++... ....+.++++|+.+++|++++++.++...+.   ++.++..+++++++.+...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~~l~~~~~~~  191 (197)
T 3fcm_A          118 GHIKRGKYVSSHLHLNLTYLIECS-EDETLMLKEDENSGVMWIPFNEISKYCSEPH---MIPIYEKLINKLKTQSKEG  191 (197)
T ss_dssp             CEEETTEEECCEEEEEEEEEEECC-TTSCCCCCC----CEEEEEGGGHHHHCCCGG---GHHHHHHHHHHHHC-----
T ss_pred             CccccCcccCCceeEEEEEEEEeC-CCcccCCCcccccceEEccHHHHHhhcCCHH---HHHHHHHHHHHHHhccccc
Confidence            0 00     01  12244555433 2234556678999999999999998866553   3568888988888775543

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.76  E-value=5.2e-18  Score=148.25  Aligned_cols=112  Identities=13%  Similarity=0.186  Sum_probs=84.0

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccccCc
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQ  269 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~~~~~~~  269 (365)
                      ..++++++++.++++||++|...+..++|.|+ +|||++++||++.+||+||++||||+++...  ..++.+..+.....
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~  113 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS  113 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence            45677888888999999998655555689999 9999999999999999999999999998773  44444431222222


Q ss_pred             cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ....+|.+..   ..++.++++|+.+++|++++++.++
T Consensus       114 ~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~  148 (171)
T 1q27_A          114 SFMCVYELRS---DATPIFNPNDISGGEWLTPEHLLAR  148 (171)
T ss_dssp             SEEEEEEEEC---CCCCCSCTTTCSCCEEECHHHHHHH
T ss_pred             cEEEEEEEEE---CCccccCchhhheEEEecHHHHHHH
Confidence            3344444443   3455566788999999999999854

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.76  E-value=4.3e-18  Score=144.28  Aligned_cols=122  Identities=20%  Similarity=0.251  Sum_probs=86.3

Q ss_pred             eEEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeec------
Q 017817          194 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAH------  264 (365)
Q Consensus       194 v~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--~ll~~~~~~------  264 (365)
                      ++|++++++.+ +++||++|...    +|.|.+|||++|+||++.+||+||++||||+++...  .+++.....      
T Consensus        10 ~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   85 (150)
T 2o1c_A           10 VSILVVIYAQDTKRVLMLQRRDD----PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFS   85 (150)
T ss_dssp             EEEEEEEEETTTCEEEEEECSSS----TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCG
T ss_pred             eEEEEEEEeCCCCEEEEEEecCC----CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeec
Confidence            67888999875 99999998532    689999999999999999999999999999998653  344432211      


Q ss_pred             ------c-ccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          265 ------N-VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       265 ------~-~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                            + ........+|.+...  .... ...+|+.+++|++++++.++.+.+.   .+.+++.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~f~~~~~--~~~~-~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~  147 (150)
T 2o1c_A           86 HLRHRYAPGVTRNTESWFCLALP--HERQ-IVFTEHLAYKWLDAPAAAALTKSWS---NRQAIEQFVI  147 (150)
T ss_dssp             GGGGGBCTTCCEEEEEEEEEEES--SCCC-CCCSSSSCEEEEEHHHHHHHCSCHH---HHHHHHHHTT
T ss_pred             ccccccCCCCcceEEEEEEEEcC--CCCC-cChhHhhccEeecHHHHHhhhcCHH---HHHHHHHHHH
Confidence                  0 111233445555543  2222 2347889999999999999876653   3566666553

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.75  E-value=1.7e-18  Score=155.44  Aligned_cols=151  Identities=16%  Similarity=0.084  Sum_probs=101.7

Q ss_pred             hcceecCeEEE---EEEeecccccc--chHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeC-CCe
Q 017817          133 IHWRRMNKKGI---WLKLPLENAEL--VPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIND-NNE  206 (365)
Q Consensus       133 ~~W~~~~~r~v---Wl~l~~~~~~l--~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~-~g~  206 (365)
                      ..|+..+++.+   |+++......+  ++..   ..   ....+.+                 .+..+|++++++. +++
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~---~~---~~~r~~~-----------------~~~~av~v~~~~~~~~~   59 (191)
T 3o6z_A            3 QQITLIKDKILSDNYFTLHNITYDLTRKDGE---VI---RHKREVY-----------------DRGNGATILLYNTKKKT   59 (191)
T ss_dssp             CCEEEEEEEEEECSSSEEEEEEEEEECTTSC---EE---EEEEEEE-----------------ECCCEEEEEEEETTTTE
T ss_pred             CceEEeEeEEEecCcEEEEEEEEEEECCCCC---EE---EEEEEEE-----------------ecCCEEEEEEEECCCCE
Confidence            46777777777   88888776644  4421   00   0000110                 0124577888885 689


Q ss_pred             EEEEeeecCCCC------CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEe
Q 017817          207 VLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLK  280 (365)
Q Consensus       207 VLLvrr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~  280 (365)
                      +||+++. +.+.      .++.|++|||++| ||++++||+||++||||+++..+..++.+...++.......+|++...
T Consensus        60 vlLv~~~-r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~  137 (191)
T 3o6z_A           60 VVLIRQF-RVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYS  137 (191)
T ss_dssp             EEEEEEE-CHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTTTBCCEEEEEEEECC
T ss_pred             EEEEEcC-CccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCCccCcEEEEEEEEEc
Confidence            9999884 3222      5789999999999 999999999999999999998888888766666555555566666643


Q ss_pred             cCCc---cccCCccceeeEEEEcccccccCCC
Q 017817          281 PLST---EIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       281 ~~~~---~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      ....   .... ++|+.++.|++++|+.++..
T Consensus       138 ~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~  168 (191)
T 3o6z_A          138 DNQRANAGGGV-EDEAIEVLELPFSQALEMIK  168 (191)
T ss_dssp             TTCC---------CCSSEEEEEEHHHHHHHHH
T ss_pred             ccccccCCCCC-CCcEEEEEEEEHHHHHHHHH
Confidence            2110   1122 67899999999999988643

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.75  E-value=2.2e-18  Score=155.54  Aligned_cols=145  Identities=17%  Similarity=0.235  Sum_probs=82.2

Q ss_pred             eeEEEEEEE--eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCcc
Q 017817          193 QVGVGGFVI--NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK  270 (365)
Q Consensus       193 ~v~V~~vVi--n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~  270 (365)
                      ...++++++  +++++|||++|..    .++.|.+|||++|+||++++||+||++||||+++....+++.+....  ...
T Consensus        40 ~~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~  113 (194)
T 2fvv_A           40 KKRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKH  113 (194)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTE
T ss_pred             cccEEEEEEEECCCCEEEEEEEeC----CCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC--Cce
Confidence            345666666  3468999999852    25799999999999999999999999999999998888888766432  223


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc--cCCCCCCCCccCcchhhH
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQLVSAFDGQTS  348 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~--y~g~~~~~l~~~f~~~~~  348 (365)
                      ...+|++..............+..+++|++++++.++....     +.++..++..++.+  |. .....++..|+...|
T Consensus       114 ~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~-----~~~~~~~l~~l~~~~~~~-~~~~~~~~~f~~~~~  187 (194)
T 2fvv_A          114 RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH-----KPVQASYFETLRQGYSAN-NGTPVVATTYSVSAQ  187 (194)
T ss_dssp             EEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT-----CHHHHHHTCC------------------------
T ss_pred             EEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhcC-----cHHHHHHHHHHhhccccc-CchhccCcceEEeec
Confidence            34455554432111111112245789999999998754322     12333444333333  33 355678888985444


Q ss_pred             H
Q 017817          349 S  349 (365)
Q Consensus       349 ~  349 (365)
                      .
T Consensus       188 ~  188 (194)
T 2fvv_A          188 S  188 (194)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.75  E-value=9.8e-18  Score=142.18  Aligned_cols=122  Identities=19%  Similarity=0.183  Sum_probs=86.7

Q ss_pred             cceeEEEEEEEeC-CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec---cc
Q 017817          191 THQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH---NV  266 (365)
Q Consensus       191 ~h~v~V~~vVin~-~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~---~~  266 (365)
                      ..+.+++++++++ +++|||+++.      .|.|.+|||++++||++.+||+||++||||+++....+++.....   ..
T Consensus        16 ~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   89 (148)
T 2azw_A           16 QTRYAAYIIVSKPENNTMVLVQAP------NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNH   89 (148)
T ss_dssp             EECCEEEEECEEGGGTEEEEEECT------TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETT
T ss_pred             eeeeEEEEEEECCCCCeEEEEEcC------CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCC
Confidence            3456787888876 7899999973      379999999999999999999999999999999888877654311   11


Q ss_pred             c---CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817          267 A---FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  324 (365)
Q Consensus       267 ~---~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l  324 (365)
                      .   ......+|.+....  ... ...+|+.+++|++++++.++....   ..+.+++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~--~~~-~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~  144 (148)
T 2azw_A           90 RQTAYYNPGYFYVANTWR--QLS-EPLERTNTLHWVAPEEAVRLLKRG---SHRWAVEKWL  144 (148)
T ss_dssp             TTEEEEEEEEEEEEEEEE--ECS-SCC-CCSEEEEECHHHHHHHBSCH---HHHHHHHHHH
T ss_pred             CCcceEEEEEEEEEEcCc--CCc-CCCCceeeEEEeeHHHHHhhhcch---hHHHHHHHHH
Confidence            1   11223445554432  222 234678899999999999876554   3366666655

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.75  E-value=4.6e-18  Score=146.93  Aligned_cols=118  Identities=21%  Similarity=0.373  Sum_probs=83.4

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----------
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA----------  263 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~----------  263 (365)
                      ++|+++|++ +++|||++++     ..|.|.+|||++|+||++.+||+||++||||+++.....++....          
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~-----~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   75 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHK-----RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPL   75 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECT-----TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCS
T ss_pred             eEEEEEEEE-CCEEEEEEEc-----CCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccc
Confidence            457778887 8899999985     368999999999999999999999999999999876554321100          


Q ss_pred             ------ccccCc---cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817          264 ------HNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  329 (365)
Q Consensus       264 ------~~~~~~---~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~  329 (365)
                            ......   ....+|.+..         ...|..+++|++++|+.++++.+.   .+.+++.+++.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~f~~~~---------~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~  138 (156)
T 1k2e_A           76 VILEEVVKYPEETHIHFDLIYLVKR---------VGGDLKNGEWIDVREIDRIETFPN---VRKVVSLALSTLYR  138 (156)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEEE---------EEECCCSCEEEEGGGGGGSCBSTT---HHHHHHHHHHHHHH
T ss_pred             eeeeeeecCCCCceEEEEEEEEEEe---------cCCcEeeeEEeCHHHHhcCCCChH---HHHHHHHHHHHHHh
Confidence                  000101   1223344432         234678999999999999887664   36777777666543

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.74  E-value=1.4e-17  Score=142.93  Aligned_cols=123  Identities=11%  Similarity=0.164  Sum_probs=84.7

Q ss_pred             cceeEEEEEEEeCCCe----EEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc
Q 017817          191 THQVGVGGFVINDNNE----VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV  266 (365)
Q Consensus       191 ~h~v~V~~vVin~~g~----VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~  266 (365)
                      .+.++|++++.+ +++    +|+++|...+  ++| |.+|||++++||++.+||+||++||||+++....+++.......
T Consensus         6 ~~~~~~~~ii~~-~~~~~~~vLl~~r~~~~--~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   81 (155)
T 2b06_A            6 LTILTNICLIED-LETQRVVMQYRAPENNR--WSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLD   81 (155)
T ss_dssp             CEEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECT
T ss_pred             CcEEEEEEEEEE-CCCCeEEEEEEECCCCC--CCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccC
Confidence            345667777777 445    8888775332  556 99999999999999999999999999999988888876554432


Q ss_pred             c-CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817          267 A-FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  324 (365)
Q Consensus       267 ~-~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l  324 (365)
                      . ......+|.+...  ...  +...|..+++|++++++.++++...   .+.+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~  133 (155)
T 2b06_A           82 TGGRYIVICYKATEF--SGT--LQSSEEGEVSWVQKDQIPNLNLAYD---MLPLMEMME  133 (155)
T ss_dssp             TSCEEEEEEEEECEE--EEC--CCCBTTBEEEEEEGGGGGGSCBCTT---HHHHHHHHH
T ss_pred             CCceEEEEEEEEEec--CCC--CCCCcceeeEEeeHHHhhhCCCChh---HHHHHHHHh
Confidence            1 1222334444322  222  2346788999999999999988764   356666554

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.74  E-value=1.6e-18  Score=143.49  Aligned_cols=117  Identities=20%  Similarity=0.272  Sum_probs=85.0

Q ss_pred             EEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEE
Q 017817          198 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC  277 (365)
Q Consensus       198 ~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~  277 (365)
                      +++++.+++|||++|... ..++|.|.+|||++++||++.+||+||++||||+.+.....++..............+|.+
T Consensus         9 ~ii~~~~~~vLl~~r~~~-~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (129)
T 1mut_A            9 GIIRNENNEIFITRRAAD-AHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLV   87 (129)
T ss_dssp             EECEETTTEEEEEECSSC-CSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEE
T ss_pred             EEEEecCCEEEEEEeCCC-CCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEE
Confidence            456688899999998643 3578999999999999999999999999999999987766655443222222222234555


Q ss_pred             EEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHH
Q 017817          278 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI  322 (365)
Q Consensus       278 ~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~  322 (365)
                      ...  ...  +..+|+.+++|++++++.+++++...   +++++.
T Consensus        88 ~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~  125 (129)
T 1mut_A           88 ERW--EGE--PWGKEGQPGEWMSLVGLNADDFPPAN---EPVIAK  125 (129)
T ss_dssp             EEC--SSC--CCCCSSCCCEEEESSSCCTTTSCTTC---HHHHHH
T ss_pred             Ecc--CCc--cCCcccceeEEeCHHHcccccCCchh---HHHHHH
Confidence            442  222  34567889999999999999887754   454543

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.5e-18  Score=146.14  Aligned_cols=127  Identities=23%  Similarity=0.238  Sum_probs=81.6

Q ss_pred             EEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          195 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       195 ~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      .+++++++++ ++|||+++.     ..|.|.+|||++++||++.+||+||++||||+++.....+..+.... ..+....
T Consensus         6 ~~~~~i~~~~~~~vLl~~r~-----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-~~~~~~~   79 (146)
T 2jvb_A            6 VRGAAIFNENLSKILLVQGT-----ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERN-IQGKNYK   79 (146)
T ss_dssp             CEEEEEBCTTSSEEEEECCS-----SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEE-ETTEEEE
T ss_pred             EEEEEEEeCCCCEEEEEEEc-----CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccc-cCCceEE
Confidence            3667777775 899999975     36899999999999999999999999999999886432211111111 1122223


Q ss_pred             EEEEEEecCCccccC-CccceeeEEEEcccccccCCCCcCCc--hHHHHHHHHHHHH
Q 017817          274 FFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDC--MFKKVIDICIARL  327 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~~~~--~~~~il~~~l~~l  327 (365)
                      +|++..........+ +++|+.+++|++++++.++.......  ++..++..+..++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~l~~~~  136 (146)
T 2jvb_A           80 IFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWL  136 (146)
T ss_dssp             EEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccchhhhhHHHHHHHHHHHH
Confidence            333322222122222 36789999999999999876555433  3333444444443

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.74  E-value=2.2e-17  Score=141.71  Aligned_cols=111  Identities=19%  Similarity=0.257  Sum_probs=80.8

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCc----
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ----  269 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~----  269 (365)
                      +++++++++ +++|||++|       .+.|.+|||++++||++.+||+||++||||+++....+++.........+    
T Consensus        20 ~~~~~ii~~-~~~vLl~~r-------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   91 (154)
T 2pqv_A           20 VRATALIVQ-NHKLLVTKD-------KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYH   91 (154)
T ss_dssp             EEEEECCEE-TTEEEEEEE-------TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEE-CCEEEEEec-------CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcce
Confidence            556677775 689999988       47899999999999999999999999999999988777765433222222    


Q ss_pred             cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                      ...++|.+...........+++|+.+++|++++++.++++.+.
T Consensus        92 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  134 (154)
T 2pqv_A           92 NIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPV  134 (154)
T ss_dssp             EEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEEST
T ss_pred             EEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcH
Confidence            1233555554322111112356789999999999999887764

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.73  E-value=1.7e-17  Score=148.64  Aligned_cols=122  Identities=21%  Similarity=0.290  Sum_probs=85.6

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCcc---E
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK---S  271 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~---~  271 (365)
                      .+++++.+ +++|||++|+     ..|.|.+|||++|+||++.+||+||++||||+++....+++.+.........   .
T Consensus         6 v~~~vi~~-~~~vLL~~r~-----~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   79 (188)
T 3fk9_A            6 VTNCIVVD-HDQVLLLQKP-----RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSE   79 (188)
T ss_dssp             EEEEEEEE-TTEEEEEECT-----TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEE-CCEEEEEEeC-----CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEE
Confidence            34455554 6899999984     4789999999999999999999999999999999888877765443322221   1


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR  326 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~  326 (365)
                      ...+++......+.+.. ..|..+++|++++++.++++.+.+   +.++..+++.
T Consensus        80 ~~~~~f~a~~~~~~~~~-~~e~~~~~W~~~~el~~~~l~~~~---~~~l~~~l~~  130 (188)
T 3fk9_A           80 WMLFTFKATEHEGEMLK-QSPEGKLEWKKKDEVLELPMAAGD---KWIFKHVLHS  130 (188)
T ss_dssp             EEEEEEEESCEESCCCS-EETTEEEEEEEGGGGGGSCCCHHH---HHHHHHHTTC
T ss_pred             EEEEEEEEECCCCCCcC-CCCCEeEEEEEHHHhhhCCCCHHH---HHHHHHHHcC
Confidence            13333333322233322 344578999999999998887643   5666666544

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.73  E-value=3.8e-17  Score=143.36  Aligned_cols=117  Identities=17%  Similarity=0.202  Sum_probs=82.1

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      .+.+++++++.++++||++++      .|.|.+|||++|+||++.+||+||++||||+++.....++.+....    ...
T Consensus        15 ~~~~~~~ii~~~~~vLL~~r~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~   84 (163)
T 3f13_A           15 LARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF----NAH   84 (163)
T ss_dssp             CEEEEEEECEETTEEEEEECC---------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEE
T ss_pred             ceEEEEEEEEeCCEEEEEEEC------CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEE
Confidence            345556666677899999884      5799999999999999999999999999999998888776543221    344


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  327 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l  327 (365)
                      .+|+|..   ++++.+. +|+.+++|++ .+....++.+.   .+.+++.+.+..
T Consensus        85 ~~f~~~~---~~~~~~~-~E~~~~~W~~-~~~~~~~l~~~---~~~il~~~~~~~  131 (163)
T 3f13_A           85 KVYLCIA---QGQPKPQ-NEIERIALVS-SPDTDMDLFVE---GRAILRRYARLR  131 (163)
T ss_dssp             EEEEEEC----CCCCCC-TTCCEEEEES-STTCSSCBCHH---HHHHHHHHHHHT
T ss_pred             EEEEEEE---CCcCccC-CCceEEEEEC-cccccCCCCHH---HHHHHHHHHHhh
Confidence            5566643   3445443 4899999999 44455555553   366677666543

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.73  E-value=2.5e-18  Score=163.12  Aligned_cols=195  Identities=19%  Similarity=0.205  Sum_probs=113.7

Q ss_pred             cccccccccCCCcEEEcCCCCCCChHHHHHHHHhhh--hcceecCe-EEEEEEeeccccccchHHHhcce---eeecCCc
Q 017817           97 LRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSL--IHWRRMNK-KGIWLKLPLENAELVPIAVKEGF---KYHHAEP  170 (365)
Q Consensus        97 ~~~~~~~~D~~~gv~v~~~~~~~~~~~f~~~l~~sl--~~W~~~~~-r~vWl~l~~~~~~l~~~a~~~gF---~~hh~~~  170 (365)
                      ..+...-.|-+.+++|+..+..   -.....|-..|  .+|--.+. +.       ....+|. +...+|   .|||+. 
T Consensus        11 ~~~~~~l~dl~~rfi~n~p~~~---~~~~~~~~f~ie~a~wfy~d~~~~-------~~~~~p~-~~~~~f~~~~f~~~~-   78 (271)
T 2a6t_A           11 ATFSQVLDDLSARFILNLPAEE---QSSVERLCFQIEQAHWFYEDFIRA-------QNDQLPS-LGLRVFSAKLFAHCP-   78 (271)
T ss_dssp             CCTHHHHHHHHHHHTTTSCGGG---TTCHHHHHHHHHHHHHHHHHTHHH-------HCSSSCC-CCHHHHHHHHHTTCH-
T ss_pred             CCHHHHHHHHHHHHhhcCCHHH---hccHHHHHHHHHHHHHHHHHhhhh-------cccCCCc-ccHHHHHHHHhhhhh-
Confidence            3455566677888888764322   11223344444  56665543 11       1111222 335566   789984 


Q ss_pred             ceeeccccccCCCCCCCC---CCcceeEEEEEEEeC-CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHH
Q 017817          171 EYLMLTYWIPDGPCVLPG---NATHQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKE  246 (365)
Q Consensus       171 ~y~~l~~wl~~~~~~lP~---~~~h~v~V~~vVin~-~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~E  246 (365)
                         ++..|.+.....++.   +..+..+++++++++ +++|||++|..    .++.|.+|||++|+||++++||+||++|
T Consensus        79 ---~l~~~~~~~~~~~~~~~~~~~~v~~v~avv~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEs~~eAA~REl~E  151 (271)
T 2a6t_A           79 ---LLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWK----ASSGWGFPKGKIDKDESDVDCAIREVYE  151 (271)
T ss_dssp             ---HHHHC---CCHHHHHHHHHSCCCCEEEEEEBCSSSSEEEEEEESS----TTCCCBCSEEECCTTCCHHHHHHHHHHH
T ss_pred             ---hhhcccccchhHHHHHHhcCCCCCeEEEEEEECCCCEEEEEEEeC----CCCeEECCcccCCCCcCHHHHHHHHHHH
Confidence               566787754433332   222344577888886 48999999842    3588999999999999999999999999


Q ss_pred             HhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCccccC-CccceeeEEEEcccccccCCCCc
Q 017817          247 ETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       247 ETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~-~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      |||+++..+..+..+. .+...+....+|++..........+ +++|+.+++|++++++.++....
T Consensus       152 EtGl~~~~l~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  216 (271)
T 2a6t_A          152 ETGFDCSSRINPNEFI-DMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK  216 (271)
T ss_dssp             HHCCCCTTTCCTTCEE-EEEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC---
T ss_pred             HhCCCceeeeeeeeec-cCCcCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcC
Confidence            9999987632221111 1111122344555554332332333 56899999999999999875543

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.72  E-value=1.4e-17  Score=148.67  Aligned_cols=132  Identities=14%  Similarity=0.211  Sum_probs=92.1

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeec---cccC
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFV-EVIAFRHAH---NVAF  268 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~~-~ll~~~~~~---~~~~  268 (365)
                      .+|++++++.++++||++|......++|.|.+ |||++++||++++||+||++||||+++... .+++.+...   +...
T Consensus        33 ~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  112 (190)
T 1hzt_A           33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI  112 (190)
T ss_dssp             ECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred             EEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence            35778888888999999986555456899999 999999999999999999999999999877 655432211   1111


Q ss_pred             --ccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC---CchHHHHHHHHHHHHh
Q 017817          269 --QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG---DCMFKKVIDICIARLR  328 (365)
Q Consensus       269 --~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~---~~~~~~il~~~l~~lr  328 (365)
                        .....+|++..   ..++.++++|+.+++|++++++.++....+   ...++.+++.++++.+
T Consensus       113 ~~~~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~~  174 (190)
T 1hzt_A          113 VENEVCPVFAART---TSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKR  174 (190)
T ss_dssp             EEEEECCEEEEEB---CSCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHHH
T ss_pred             cceEEEEEEEEec---CCCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHHh
Confidence              11223444443   234556678999999999999987632211   1144566666655543

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.71  E-value=1.5e-17  Score=153.06  Aligned_cols=116  Identities=14%  Similarity=0.104  Sum_probs=82.0

Q ss_pred             ceeEEEEEEEe-CCCeEEEEeeecCCCCC-------------------------------CCceEeceeeecC-CCCHHH
Q 017817          192 HQVGVGGFVIN-DNNEVLVVQEKYCNPAF-------------------------------AGLWKLPTGFIDE-SEEIFK  238 (365)
Q Consensus       192 h~v~V~~vVin-~~g~VLLvrr~~~~~~~-------------------------------~g~W~lPGG~ve~-GEs~~e  238 (365)
                      +..+|++++++ .++++||+++. +++..                               ++.|++|||++|+ ||++++
T Consensus        35 ~~~aV~vl~~~~~~~~vlLvrQ~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~e  113 (218)
T 3q91_A           35 THDSVTVLLFNSSRRSLVLVKQF-RPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEE  113 (218)
T ss_dssp             CCCEEEEEEEEGGGTEEEEEEEE-CHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHH
T ss_pred             cCCeEEEEEEECCCCEEEEEEcc-ccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHH
Confidence            34578888898 46899999873 43322                               6899999999999 999999


Q ss_pred             HHHHHHHHHhCCcc--eeeEEEEEEeeccccCccEEEEEEEEEecC----CccccCCccceeeEEEEcccccccCC
Q 017817          239 GAVREVKEETGVDT--EFVEVIAFRHAHNVAFQKSDLFFICMLKPL----STEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       239 AAiREv~EETGl~~--~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~----~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      ||+||++||||+.+  ..+..++.+...++.......+|++.....    .....++++|+.++.|++++|+.++.
T Consensus       114 aA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i  189 (218)
T 3q91_A          114 VACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFA  189 (218)
T ss_dssp             HHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHH
T ss_pred             HHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHH
Confidence            99999999999998  677777766555555555556666665321    12345567899999999999998754

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.68  E-value=1.6e-16  Score=136.76  Aligned_cols=126  Identities=17%  Similarity=0.259  Sum_probs=87.6

Q ss_pred             ceeEEEEEEEeC---CCeEEEEeeecCCCCCCCceEeceeeecCCCCHH-HHHHHHHHHHhC-CcceeeEEEEEEeeccc
Q 017817          192 HQVGVGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF-KGAVREVKEETG-VDTEFVEVIAFRHAHNV  266 (365)
Q Consensus       192 h~v~V~~vVin~---~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~-eAAiREv~EETG-l~~~~~~ll~~~~~~~~  266 (365)
                      ++..+.++|.++   +++|||++|.. ...+.|.|+||||.+++||++. +||+||++|||| +.+.....++...+...
T Consensus        18 ~~~~~~~vi~~~~~~~~~vLl~~R~~-~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~   96 (155)
T 1x51_A           18 EESSATCVLEQPGALGAQILLVQRPN-SGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS   96 (155)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCC-CSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS
T ss_pred             eEEEEEEEEEecCCCCCEEEEEECCC-CCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecC
Confidence            444555666664   58999999853 3457899999999999999996 999999999999 88876666654333333


Q ss_pred             cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          267 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       267 ~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      .+.....+|.+...  .+.+  ...|..+++|++++++.+++++.   ..+++++.+..
T Consensus        97 ~~~~~~~~~~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~  148 (155)
T 1x51_A           97 HIKLTYQVYGLALE--GQTP--VTTVPPGARWLTQEEFHTAAVST---AMKKVFRVYQG  148 (155)
T ss_dssp             SCEEEEEEEEEECS--SCCC--CCCCCTTEEEEEHHHHHHSCCCH---HHHHHHHHHHH
T ss_pred             CccEEEEEEEEEEc--CCCC--CCCCCCccEEccHHHhhhcCCCH---HHHHHHHHHHh
Confidence            33323344544432  2222  34567789999999999988765   34666666553

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.68  E-value=2.3e-16  Score=152.50  Aligned_cols=131  Identities=21%  Similarity=0.270  Sum_probs=84.3

Q ss_pred             CCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE------EEEe
Q 017817          189 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI------AFRH  262 (365)
Q Consensus       189 ~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll------~~~~  262 (365)
                      ++...++|+++++ .+++|||++|...  +..|.|.+|||++|+||++++||+||++||||+++....++      ..+.
T Consensus       199 ~~~~~~~v~~vi~-~~~~vLL~~r~~~--~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  275 (341)
T 2qjo_A          199 YAPTFITTDAVVV-QAGHVLMVRRQAK--PGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFD  275 (341)
T ss_dssp             SCCCEEEEEEEEE-ETTEEEEEECCSS--SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEEC
T ss_pred             CCCCceEEEEEEE-eCCEEEEEEecCC--CCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEe
Confidence            4455677878777 4689999998643  25789999999999999999999999999999998754322      2222


Q ss_pred             eccc-cCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC--CCCcCCchHHHHHHHHHH
Q 017817          263 AHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ--PLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       263 ~~~~-~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~--~~~~~~~~~~~il~~~l~  325 (365)
                      .... ..+ ....+|++...........+++|+.+++|++++++.++  ++.+.+   +.+++.+++
T Consensus       276 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~---~~il~~~~~  339 (341)
T 2qjo_A          276 APGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDH---FQIIQHFVS  339 (341)
T ss_dssp             CTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTH---HHHHHHHC-
T ss_pred             CCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchHH---HHHHHHHHh
Confidence            1111 111 23455666553221111135688999999999999997  555543   566666554

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.68  E-value=5.8e-16  Score=150.58  Aligned_cols=135  Identities=20%  Similarity=0.283  Sum_probs=92.8

Q ss_pred             CCCcceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEE----EEEE-e
Q 017817          188 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV----IAFR-H  262 (365)
Q Consensus       188 ~~~~h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~l----l~~~-~  262 (365)
                      .++...++|+++|+ .+++|||++|...+  ..|.|.+|||++|+||++++||+||++||||+++....+    .... .
T Consensus       203 ~~~~~~~~v~~vv~-~~~~vLL~~r~~~~--~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~  279 (352)
T 2qjt_B          203 PFKPNFVTVDALVI-VNDHILMVQRKAHP--GKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVF  279 (352)
T ss_dssp             SSCCEEEEEEEEEE-ETTEEEEEEESSSS--STTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEE
T ss_pred             CCCCCceEEEEEEE-ECCEEEEEEEcCCC--CCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEe
Confidence            45566677888877 57899999986432  578999999999999999999999999999999874321    1111 1


Q ss_pred             eccccC--c-cEEEEEEEEEecCCcccc-CCccceeeEEEEcc-cccccC--CCCcCCchHHHHHHHHHHHHh
Q 017817          263 AHNVAF--Q-KSDLFFICMLKPLSTEIK-VDDLEIKGAKWMPF-MEFVKQ--PLIQGDCMFKKVIDICIARLR  328 (365)
Q Consensus       263 ~~~~~~--~-~~~~~f~~~l~~~~~~i~-~~~~Ei~~~~Wv~l-eEl~~~--~~~~~~~~~~~il~~~l~~lr  328 (365)
                      ..+...  + ...+.|++........+. .+++|+.+++|+++ +++.++  .+.+.+   +.+++.++++++
T Consensus       280 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~---~~il~~~~~~l~  349 (352)
T 2qjt_B          280 DYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDH---YQIITILLEECG  349 (352)
T ss_dssp             CCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTH---HHHHHHHHHHTC
T ss_pred             cCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhH---HHHHHHHHHHhc
Confidence            112111  1 234455665532221122 24689999999999 999987  455443   678888887763

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.65  E-value=8.6e-17  Score=147.21  Aligned_cols=108  Identities=21%  Similarity=0.292  Sum_probs=74.4

Q ss_pred             EEEEEEeCCCeEEEEeeecCCC--CCCCceEe-ceeeecCCCC--H----HHHHHHHHHHHhCCcceeeEEEEEEeeccc
Q 017817          196 VGGFVINDNNEVLVVQEKYCNP--AFAGLWKL-PTGFIDESEE--I----FKGAVREVKEETGVDTEFVEVIAFRHAHNV  266 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~--~~~g~W~l-PGG~ve~GEs--~----~eAAiREv~EETGl~~~~~~ll~~~~~~~~  266 (365)
                      +..+++..++++||++|...+.  ...+.|.+ |||+||+||+  +    ++||+||++||||+++....+++.......
T Consensus        70 i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~  149 (211)
T 3e57_A           70 IPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTT  149 (211)
T ss_dssp             EEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSS
T ss_pred             EEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCC
Confidence            4445555689999999964331  13578999 9999999998  4    999999999999999988888887654322


Q ss_pred             cCcc--EEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          267 AFQK--SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       267 ~~~~--~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ..+.  ...+|.|...  .  ..+.+.|..+++|++++++.++
T Consensus       150 ~~~~~~l~~~f~~~~~--~--g~~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          150 EVSRVHLGALFLGRGK--F--FSVKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             HHHHTEEEEEEEEEEE--E--EEESCTTTCEEEEEEHHHHHHH
T ss_pred             CCCeEEEEEEEEEEeC--C--ceeCCCCeEEEEEEEHHHHHHh
Confidence            2222  2234556543  2  3345677889999999999886

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.64  E-value=1.1e-15  Score=150.27  Aligned_cols=119  Identities=22%  Similarity=0.261  Sum_probs=85.8

Q ss_pred             CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-------------Cc
Q 017817          203 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-------------FQ  269 (365)
Q Consensus       203 ~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~-------------~~  269 (365)
                      ++.+|||+++.     ..+.|.+|||++|+||++++||+||++||||+++....+++........             ..
T Consensus        36 ~~~~vLLv~r~-----~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~  110 (364)
T 3fjy_A           36 DSIEVCIVHRP-----KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADT  110 (364)
T ss_dssp             TTEEEEEEEET-----TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC--------------------
T ss_pred             CceEEEEEEcC-----CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCc
Confidence            44589999984     3589999999999999999999999999999999888887754432221             12


Q ss_pred             cEEEEEEEEEecCC----------ccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817          270 KSDLFFICMLKPLS----------TEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  329 (365)
Q Consensus       270 ~~~~~f~~~l~~~~----------~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~  329 (365)
                      ....+|++......          .....+++|+.+++|++++++.++....   ..+.+++.++++++.
T Consensus       111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~---~~r~il~~~~~~l~~  177 (364)
T 3fjy_A          111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHS---TDKDTLAVFVDRVQE  177 (364)
T ss_dssp             -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCH---HHHHHHHHHHHHHHT
T ss_pred             eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcch---hhHHHHHHHHHHhcc
Confidence            34456665543211          1123456899999999999999876555   346788888887754

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.58  E-value=5.9e-15  Score=145.62  Aligned_cols=123  Identities=15%  Similarity=0.075  Sum_probs=92.5

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      ...+++++.|.+++|||+||.. ...++|.|+||||.+|+| ++++|++||++||||+++.....++...+....+....
T Consensus       240 ~~~~~~vi~~~~g~vLL~rR~~-~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~  317 (369)
T 3fsp_A          240 VPLAVAVLADDEGRVLIRKRDS-TGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQL  317 (369)
T ss_dssp             EEEEEEEEECSSSEEEEEECCS-SSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEE
T ss_pred             EEEEEEEEEeCCCEEEEEECCC-CCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEE
Confidence            3445566777889999999964 335789999999999999 99999999999999999987776665554444444444


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  327 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l  327 (365)
                      .+|.+....  +     ..|..+++|++++++.+++++.   ..+.+++.+.+.+
T Consensus       318 ~~~~~~~~~--~-----~~e~~~~~Wv~~~el~~~~l~~---~~~~il~~l~~~~  362 (369)
T 3fsp_A          318 TVFPGRLVH--G-----GPVEEPYRLAPEDELKAYAFPV---SHQRVWREYKEWA  362 (369)
T ss_dssp             EEEEEEECC--S-----SCCCTTEEEEEGGGGGGSCCCH---HHHHHHHHHHHHT
T ss_pred             EEEEEEEcC--C-----CCCccccEEeeHHHhhhCCCCH---HHHHHHHHHHHHh
Confidence            455555421  1     3577889999999999988876   4467777766554

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.56  E-value=6.9e-14  Score=129.92  Aligned_cols=111  Identities=18%  Similarity=0.235  Sum_probs=81.0

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCC------CC---HHHHHHHHHHHHhCCccee-----eEEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDES------EE---IFKGAVREVKEETGVDTEF-----VEVI  258 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~G------Es---~~eAAiREv~EETGl~~~~-----~~ll  258 (365)
                      .++.+++++.++++||++|...+..++|.|++| ||++++|      |+   +.+||+||++||||+.+..     ...+
T Consensus        60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l  139 (235)
T 2dho_A           60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL  139 (235)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred             EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence            457788899889999999876655678999999 5999999      88   4999999999999998652     4555


Q ss_pred             EEEeec-cccCc----cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          259 AFRHAH-NVAFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       259 ~~~~~~-~~~~~----~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      +.+... +...+    ....+|++..   ..++.++++|+.+++|++++++.++
T Consensus       140 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~~el~~~  190 (235)
T 2dho_A          140 TRIHYKAQSDGIWGEHEIDYILLVRM---NVTLNPDPNEIKSYCYVSKEELKEL  190 (235)
T ss_dssp             EEEEEEEECSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             EEEEEeccCCCccceeEEEEEEEEEE---CCCCcCChHHEEEEEEEcHHHHHHH
Confidence            543321 11111    1223344442   3456677899999999999999775

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.55  E-value=6.2e-14  Score=131.15  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=80.9

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEece-eeecCC------CCH---HHHHHHHHHHHhCCccee-----eEEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPT-GFIDES------EEI---FKGAVREVKEETGVDTEF-----VEVI  258 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPG-G~ve~G------Es~---~eAAiREv~EETGl~~~~-----~~ll  258 (365)
                      .++.++++|.++++||+||...+..++|.|++|+ |++++|      |++   .+||+||++||||+.+..     ...+
T Consensus        71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l  150 (246)
T 2pny_A           71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFM  150 (246)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEE
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEE
Confidence            3577888898899999998766656789999995 999999      887   999999999999998652     3555


Q ss_pred             EEEee-ccccCc----cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          259 AFRHA-HNVAFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       259 ~~~~~-~~~~~~----~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      +.+.. .+....    ....+|++..   ..++.++++|+.+++|++++|+.++
T Consensus       151 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~eel~~~  201 (246)
T 2pny_A          151 TIYHHKAKSDRIWGEHEICYLLLVRK---NVTLNPDPSETKSILYLSQEELWEL  201 (246)
T ss_dssp             EEEEEEEESSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             EEEEEEecCCCceeeeEEEEEEEEEE---CCCCCCChHHeeEEEEEeHHHHHHH
Confidence            54322 111111    1223333432   3456677899999999999999774

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.53  E-value=6.2e-15  Score=134.53  Aligned_cols=103  Identities=25%  Similarity=0.304  Sum_probs=74.3

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCC-CHHHHHHHHHHHHhCCcceeeE-----EEEEEeeccccCc
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGVDTEFVE-----VIAFRHAHNVAFQ  269 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGl~~~~~~-----ll~~~~~~~~~~~  269 (365)
                      +.+++++.++++||++|      ..|.|+||||++|+|| ++++||+||++||||+.+....     .++....... ..
T Consensus        47 vv~~i~~~~~~vLl~~r------~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~  119 (212)
T 1u20_A           47 KLFDRVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QK  119 (212)
T ss_dssp             EETTTEECCEEEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SC
T ss_pred             EEEEEEecCCEEEEEEe------CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-Cc
Confidence            44556677889999887      3689999999999999 9999999999999999987543     3443332222 34


Q ss_pred             cEEEEEEEEEecCCccc----------cCCccceeeEEEEcccccccC
Q 017817          270 KSDLFFICMLKPLSTEI----------KVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~i----------~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ....+|.|....  +++          ..++.|..++.|+|++++.+.
T Consensus       120 ~~~~~f~~~~~~--~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          120 CVTHFYIKELKL--EEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             EEEEEEEEECCH--HHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             EEEEEEEEEecC--CCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence            445566665432  211          123568899999999999764

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.49  E-value=5.6e-13  Score=127.60  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcc------------eeeEEE---E--EE-eecccc
Q 017817          206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT------------EFVEVI---A--FR-HAHNVA  267 (365)
Q Consensus       206 ~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~------------~~~~ll---~--~~-~~~~~~  267 (365)
                      +|||++|.     ..|.|.+|||+||+||++.+||+||++||||+.+            ....++   +  .+ ......
T Consensus       140 ~vLl~~r~-----~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dp  214 (292)
T 1q33_A          140 QFVAIKRK-----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP  214 (292)
T ss_dssp             EEEEEECT-----TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT
T ss_pred             EEEEEEec-----CCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCC
Confidence            69999985     3589999999999999999999999999999983            111111   1  11 111111


Q ss_pred             C-----ccEEEEEEEEEecC---CccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccC
Q 017817          268 F-----QKSDLFFICMLKPL---STEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYC  332 (365)
Q Consensus       268 ~-----~~~~~~f~~~l~~~---~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~  332 (365)
                      .     ....+.|.+.....   ........+|+.+++|++++++.++...+     +.+|+.++++++..|.
T Consensus       215 r~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L~~~h-----~~il~~~~~~~~a~~~  282 (292)
T 1q33_A          215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH-----SQFIKLVAEKRDAHWS  282 (292)
T ss_dssp             TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCSTTH-----HHHHHHHHHHHTCCCC
T ss_pred             CCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcccCHhH-----HHHHHHHHHHhcCccc
Confidence            1     11233444443211   11112346789999999999998764333     6788888887765543

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.42  E-value=1.2e-12  Score=125.56  Aligned_cols=114  Identities=14%  Similarity=0.107  Sum_probs=82.1

Q ss_pred             eeEEEEEEEeCCC---eEEEEeeecCCCCCCCceE-eceeeecCCCCHHHHHHHHHHHHhCCccee---eEEEEE---Ee
Q 017817          193 QVGVGGFVINDNN---EVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEF---VEVIAF---RH  262 (365)
Q Consensus       193 ~v~V~~vVin~~g---~VLLvrr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGl~~~~---~~ll~~---~~  262 (365)
                      ..+|-+.+++.++   ++|+.||...+..++|.|+ .|+|++++||++.+||+||+.||+||.++.   ...++.   ..
T Consensus       118 ~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~  197 (300)
T 3dup_A          118 AYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCM  197 (300)
T ss_dssp             EEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEE
T ss_pred             EEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEE
Confidence            3567788888776   9999999888888999995 899999999999999999999999998753   222222   21


Q ss_pred             eccccCccEEEEEEEEEe-cCCccccCCccceeeEEEEcccccccC
Q 017817          263 AHNVAFQKSDLFFICMLK-PLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       263 ~~~~~~~~~~~~f~~~l~-~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ...... ...+.|++.+. +....+.++++|+.+++|++++|+.++
T Consensus       198 ~~~~G~-~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~  242 (300)
T 3dup_A          198 ESPAGI-KPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA  242 (300)
T ss_dssp             EETTEE-EEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHH
T ss_pred             ecCCCe-EEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHH
Confidence            111111 12233444332 223344668899999999999999775

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.34  E-value=1.2e-11  Score=114.58  Aligned_cols=112  Identities=26%  Similarity=0.316  Sum_probs=74.8

Q ss_pred             eeEEEEEEEeC--CC--eEEEEeeecCCCCCCCceEeceeeecCCCC--------------------HHHHHHHHHHHHh
Q 017817          193 QVGVGGFVIND--NN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEE--------------------IFKGAVREVKEET  248 (365)
Q Consensus       193 ~v~V~~vVin~--~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs--------------------~~eAAiREv~EET  248 (365)
                      +.++.++++++  ++  +|||++|.......+|.|.||||+||+||+                    +..||+||++|||
T Consensus         8 r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~   87 (232)
T 3qsj_A            8 RKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEI   87 (232)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHh
Confidence            44555666653  23  899999976655568999999999999987                    5899999999999


Q ss_pred             CCcceee------------------------------------------EEEEEEeeccccCc-cEEEEEEEEEecCCcc
Q 017817          249 GVDTEFV------------------------------------------EVIAFRHAHNVAFQ-KSDLFFICMLKPLSTE  285 (365)
Q Consensus       249 Gl~~~~~------------------------------------------~ll~~~~~~~~~~~-~~~~~f~~~l~~~~~~  285 (365)
                      |+.+...                                          ...+..-....... ....||++.+. ....
T Consensus        88 Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lp-q~~~  166 (232)
T 3qsj_A           88 GWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQ-HLGE  166 (232)
T ss_dssp             SCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECS-SCCC
T ss_pred             CceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECC-CCCC
Confidence            9965321                                          11111111111112 23456665553 2121


Q ss_pred             ccCCccceeeEEEEcccccc
Q 017817          286 IKVDDLEIKGAKWMPFMEFV  305 (365)
Q Consensus       286 i~~~~~Ei~~~~Wv~leEl~  305 (365)
                      ...+.+|+.+++|++++|+.
T Consensus       167 v~~d~~E~~~~~W~~p~eal  186 (232)
T 3qsj_A          167 PRLHGAELDAALWTPARDML  186 (232)
T ss_dssp             CCCCSSSEEEEEEEEHHHHH
T ss_pred             CCCCCCceEEEEEEcHHHHH
Confidence            24578999999999999995

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.32  E-value=1.4e-12  Score=119.70  Aligned_cols=94  Identities=24%  Similarity=0.350  Sum_probs=64.1

Q ss_pred             eEEEEeeecCCCCCCCceEeceeeecCCC-CHHHHHHHHHHHHhCCccee--eEEEEEEeecccc-CccEEEEEEEEEec
Q 017817          206 EVLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVA-FQKSDLFFICMLKP  281 (365)
Q Consensus       206 ~VLLvrr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGl~~~~--~~ll~~~~~~~~~-~~~~~~~f~~~l~~  281 (365)
                      ++||+.+.      ++.|++|||++|+|| ++++||+||++||||+++..  +..+......+.. .....++|++.+..
T Consensus        66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~  139 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL  139 (217)
T ss_dssp             EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred             cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence            56666552      679999999999999 99999999999999999873  2222222222222 23455667776532


Q ss_pred             CCc--------cccCCccceeeEEEEcccccc
Q 017817          282 LST--------EIKVDDLEIKGAKWMPFMEFV  305 (365)
Q Consensus       282 ~~~--------~i~~~~~Ei~~~~Wv~leEl~  305 (365)
                      ...        ....+..|..++.|+|++++.
T Consensus       140 ~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          140 EELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             ccceecccccccccccCCceeeEEEEEHHHhh
Confidence            111        012235688999999999987

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.24  E-value=2.8e-11  Score=117.28  Aligned_cols=119  Identities=8%  Similarity=0.167  Sum_probs=85.0

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHh-CCcceeeEEEEEEeeccccCcc
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET-GVDTEFVEVIAFRHAHNVAFQK  270 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EET-Gl~~~~~~ll~~~~~~~~~~~~  270 (365)
                      +++.|++++. .+|+|||+  .     ..| |.||||.++.+++  ++|+||++||| |++++...+++.+....  .+.
T Consensus       182 p~~~vgaii~-~~g~vLL~--~-----~~G-W~LPG~~~~~~~~--~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~~~  248 (321)
T 3rh7_A          182 GEIRLGAVLE-QQGAVFLA--G-----NET-LSLPNCTVEGGDP--ARTLAAYLEQLTGLNVTIGFLYSVYEDKS--DGR  248 (321)
T ss_dssp             SCEEEEEEEE-SSSCEEEB--C-----SSE-EBCCEEEESSSCH--HHHHHHHHHHHHSSCEEEEEEEEEEECTT--TCC
T ss_pred             CcceEEEEEE-ECCEEEEe--e-----CCC-ccCCcccCCCChh--HHHHHHHHHHhcCCEEeeceEEEEEEcCC--Cce
Confidence            3466766655 56899999  2     357 9999886655544  59999999997 99999999988876543  234


Q ss_pred             EEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccCCC
Q 017817          271 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGL  334 (365)
Q Consensus       271 ~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~g~  334 (365)
                      ..++|.|....  ++       ..+++|++++|++.+.+..+  ..+.+|+.+++..+....|+
T Consensus       249 ~~i~f~~~~~~--g~-------~~e~~~f~~~elp~~~~~~~--~~~~~L~~y~~e~~~g~f~i  301 (321)
T 3rh7_A          249 QNIVYHALASD--GA-------PRQGRFLRPAELAAAKFSSS--ATADIINRFVLESSIGNFGI  301 (321)
T ss_dssp             EEEEEEEEECS--SC-------CSSSEEECHHHHTTCEESSH--HHHHHHHHHHHTTSCSSCC-
T ss_pred             EEEEEEEEeCC--CC-------eeeeEEECHHHCCCcccCCH--HHHHHHHHHHHHhhcCCCCc
Confidence            56788887632  22       26789999999998866542  56778888876555544443

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.83  E-value=1.9e-09  Score=96.51  Aligned_cols=90  Identities=20%  Similarity=0.296  Sum_probs=56.9

Q ss_pred             EEEEeeecCCCCCCCceEeceeeecCCC-CHHHHHHHHHHHHhCC-cceeeEEEEEEeeccccCccEEEEEEEEEecCCc
Q 017817          207 VLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGV-DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLST  284 (365)
Q Consensus       207 VLLvrr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGl-~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~  284 (365)
                      |||+.|      ..|.|+||||+||+|| ++++|+.||+.||+|+ .++...++......+. ......+|.|.+..  +
T Consensus        46 iLmQ~R------~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl~~--G  116 (214)
T 3kvh_A           46 VLMQMR------FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQLTL--E  116 (214)
T ss_dssp             EEEEEE------TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEECCH--H
T ss_pred             EEEeee------eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEeeC--C
Confidence            555555      5799999999999999 9999999999999997 4655555543322222 34455677776532  1


Q ss_pred             cc--------cC-C-ccceeeEEEEcccccc
Q 017817          285 EI--------KV-D-DLEIKGAKWMPFMEFV  305 (365)
Q Consensus       285 ~i--------~~-~-~~Ei~~~~Wv~leEl~  305 (365)
                      ++        .. + ..|.....-+|+=.+.
T Consensus       117 e~~~lE~~A~~A~d~G~EvlGlvRVPlytl~  147 (214)
T 3kvh_A          117 QLHAVEISAVHSRDHGLEVLGLVRVPLYTQK  147 (214)
T ss_dssp             HHHHHHHHHHTSTTBTTTEEEEEEECCCBCT
T ss_pred             ccchhhhcccCCcccCceecceEEeeeEEec
Confidence            11        11 1 3466667777775554

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.78  E-value=2.6e-08  Score=89.91  Aligned_cols=62  Identities=26%  Similarity=0.377  Sum_probs=47.5

Q ss_pred             eEEEEEE-EeCCC--eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhC------CcceeeEEEEEE
Q 017817          194 VGVGGFV-INDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG------VDTEFVEVIAFR  261 (365)
Q Consensus       194 v~V~~vV-in~~g--~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG------l~~~~~~ll~~~  261 (365)
                      .+|.+++ +++.+  +|||+|+.      .+.|.+|||.+|+||++++|++||+.||+|      .+.+..+.++..
T Consensus        59 ~sV~avil~~~~~~phVLLlq~~------~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~w  129 (208)
T 3bho_A           59 RTVEGVLIVHEHRLPHVLLLQLG------TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNW  129 (208)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEE------TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEE
T ss_pred             eEEEEEEEEcCCCCcEEEEEEcC------CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEE
Confidence            4455554 44444  79999974      459999999999999999999999999999      455556677754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-20
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	8e-18
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	1e-17
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	4e-15
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-14
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	1e-13
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	2e-13
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	1e-12
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	2e-12
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	3e-12
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	6e-12
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	2e-11
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	3e-11
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	4e-10
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	4e-10
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	6e-10
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	4e-09
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	2e-08
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	3e-08
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	5e-08
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	1e-07
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-07
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	4e-07
d1mqea_	202	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobac	6e-07
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-05

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 85.2 bits (210), Expect = 1e-20
 Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 3/144 (2%)

Query: 191 THQVGVGGFVINDNNEVLVVQEKY--CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET 248
                 G  ++N+  ++L+VQEK    +P  AGLW +P+G +++ E     AVRE  EET
Sbjct: 10  VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEET 69

Query: 249 GVDTEFVEVIA-FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307
           G+    V+ +  +              ++   +P  T       EI  A ++   +F + 
Sbjct: 70  GLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQL 129

Query: 308 PLIQGDCMFKKVIDICIARLRKRY 331
                  M++  +    A   K +
Sbjct: 130 YAAGQIRMYQTKLFYADALREKGF 153

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 76.6 bits (188), Expect = 8e-18
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 12/135 (8%)

Query: 193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 252
           ++G GG V N   EVL+++++       G W  P G  +  E + + AVREV EETGV  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRA 55

Query: 253 EFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 312
           E +  +      N    + ++ +  M        ++++  + GA W    E         
Sbjct: 56  EVLLPLYPTRYVNPKGVEREVHWFLM--RGEGAPRLEE-GMTGAGWFSPEEARALLAFPE 112

Query: 313 DCMFKKVIDICIARL 327
           D     ++++ + RL
Sbjct: 113 D---LGLLEVALERL 124

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 76.8 bits (188), Expect = 1e-17
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 10/152 (6%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
           V V   VI  +++ L+V+E       A     P G ++  E I +   REV EETG    
Sbjct: 4   VTVAA-VIEQDDKYLLVEEI--PRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFL 60

Query: 254 FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLIQG 312
              +    H    +   + L F    + +S +  +  D  I  A W    E   +  +  
Sbjct: 61  PEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHR 120

Query: 313 DCMFKKVIDICIARLRKRYCGLYPHQLVSAFD 344
             +  + I+   A  R      YP  ++  +D
Sbjct: 121 TPLVMQCIEDYHAGKR------YPLDILQYYD 146

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 69.8 bits (170), Expect = 4e-15
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 196 VGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
            G  +++    + ++V+    +      W  P G ID+ E     A+REV EETG D   
Sbjct: 5   RGAIMLDMSMQQCVLVKGWKAS----SGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 60

Query: 255 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDC 314
                      +  Q   L+ I  +   +        EI   +W   M+       +   
Sbjct: 61  RINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQT 120

Query: 315 MFKKVIDIC--IARLRK 329
           M  K   +   +A L+K
Sbjct: 121 MKNKFYMVIPFLAPLKK 137

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 68.0 bits (165), Expect = 2e-14
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
           V   V+ +N +VL+V+ K       G++  P G ++ +E   +   RE +EETG+  E +
Sbjct: 3   VTSGVLVENGKVLLVKHKR-----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57

Query: 256 EVIAFRHAHNVAFQKSDLFFICMLKPLSTE----------IKVDDLEIKGAKWMPFMEFV 305
                    N   +   L  +  +     E          +K    ++K  +W+   E  
Sbjct: 58  GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREID 117

Query: 306 KQPLIQGDCMFKKVIDICIARLRKR 330
           +          +KV+ + ++ L + 
Sbjct: 118 RIETFPNV---RKVVSLALSTLYRL 139

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
           T  V +   V N   E L+ +    N    G W +P G + + E +     R    E G+
Sbjct: 16  TPLVSLDFIVENSRGEFLLGKRT--NRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGL 73

Query: 251 D---TEFVEVIAFRHAHNVAFQKSD-----LFFICMLKPLSTEIKVDDLEIKGAKWMPFM 302
               T       ++H ++  F  +D     +      +    E+ + D +    +W+   
Sbjct: 74  RLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSD 133

Query: 303 EFVKQPLI 310
             +    +
Sbjct: 134 ALLASDNV 141

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 11/139 (7%)

Query: 191 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 250
             +      V    N  +V+ +        G + LP G I+ +E   +   REV EE G+
Sbjct: 15  QTRYAAYIIVSKPENNTMVLVQAP-----NGAYFLPGGEIEGTETKEEAIHREVLEELGI 69

Query: 251 DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDL---EIKGAKWMPFMEFVKQ 307
             E    +     +  +  +   ++      ++   +             W+   E V+ 
Sbjct: 70  SVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRL 129

Query: 308 PLIQGDCMFKKVIDICIAR 326
                    +  ++  +A 
Sbjct: 130 LKRGSH---RWAVEKWLAA 145

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
           ++     VL+  +K      AG W    G + E E I  GA RE++EE+G+  + +  + 
Sbjct: 11  LVLQPQRVLLGMKK--RGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVG 68

Query: 260 FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 313
                     + +L  + +    S +    + +     W    +   + +   D
Sbjct: 69  QIVFE--FVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDD 120

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
            +     F      EVL+V            W +P G ++  EE    AVREV EE GV 
Sbjct: 12  KRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVK 67

Query: 252 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
                ++          +     ++ ++  +  + +      +  +W    + +K
Sbjct: 68  GTLGRLVGIFENQE--RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIK 120

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 12/139 (8%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
           +   V N+  E L++Q           W  P G ++  E+  + A+R  +EE G++   +
Sbjct: 20  LIPKVDNNAIEFLLLQASDGI----HHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 256 EVIAFRHAHNVAF----QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311
            +I               K+ ++++  +K    EI++   E +  +W+   E  +    +
Sbjct: 76  TIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYRWLGLEEACQLAQFK 134

Query: 312 GDCMFKKVIDICIARLRKR 330
                K  +      L   
Sbjct: 135 EM---KAALQEGHQFLCSI 150

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 60.1 bits (145), Expect = 6e-12
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA 259
            I  ++ +L+ Q         G+  +  GF++  E + +   REV EE+G+  + +  + 
Sbjct: 9   AIRRDDSILLAQHTRHRN---GVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVT 65

Query: 260 FRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKV 319
            +           L    M +  S +I +D  E+  A W  + +    P      + +++
Sbjct: 66  SQPWP----FPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPP--PGTVARRL 119

Query: 320 IDICIARLRKRY 331
           I+  +A  R  Y
Sbjct: 120 IEDTVAMCRAEY 131

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 60.2 bits (145), Expect = 2e-11
 Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 22/191 (11%)

Query: 160 KEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVI-----NDNNEVLVVQEKY 214
           K  ++   +  E+L   Y        LP      + V   ++      D  +VL++Q K 
Sbjct: 9   KNYYERQASLAEFLT-WYH----QQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRK- 62

Query: 215 CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-FQKSDL 273
               F   W LP GF++ +E      +RE KEETGV      +             +  +
Sbjct: 63  -GHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWV 121

Query: 274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG 333
             +  L  +  E  +   + K   W       +   +  +       D+ I    K    
Sbjct: 122 VTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHE-------DVEITLDLKTAAS 174

Query: 334 LYPHQLVSAFD 344
           L    L  AFD
Sbjct: 175 LGKDTL--AFD 183

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 59.0 bits (142), Expect = 3e-11
 Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 8/148 (5%)

Query: 199 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 258
            + +   + +V+Q +         +  P G ++  E   +  +RE+ EETG+    ++  
Sbjct: 14  LIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT---IQNP 70

Query: 259 AFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKK 318
                 N        + +   K       +   E     W+   +     L         
Sbjct: 71  QLVGIKNWPLDTGGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDM---LP 127

Query: 319 VIDICIARLRKRYCGLYPHQLVSAFDGQ 346
           ++++  A  +  +   YP +    ++ +
Sbjct: 128 LMEMMEAPDKSEF--FYPRRTEDDWEKK 153

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
           H+  V    + +   + V Q            ++P G I+  E+  + A RE+ E+TG+ 
Sbjct: 23  HKPAVAVIALREGRMLFVRQ--MRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 80

Query: 252 TEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
            +   + ++  +     +K+ +F    LK    E   D+ E     WM   E ++
Sbjct: 81  GDLTYLFSYFVSPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALE 133

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 255
             G + N+NNE+ + +    +   A   + P G I+  E   +  VRE++EE G+  +  
Sbjct: 7   AVGIIRNENNEIFITRRAA-DAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65

Query: 256 EVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCM 315
            +             +  F++        E +    E +  +WM  +          +  
Sbjct: 66  SLFEKLEYEFPDRHITLWFWLVE----RWEGEPWGKEGQPGEWMSLVGLNADDFPPAN-- 119

Query: 316 FKKVIDICIARLRK 329
            + VI     +L++
Sbjct: 120 -EPVIA----KLKR 128

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 55.6 bits (133), Expect = 6e-10
 Identities = 20/113 (17%), Positives = 36/113 (31%)

Query: 199 FVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI 258
                +  VL+       P   G    P G +D  E   + A+RE +EE  +D   V ++
Sbjct: 39  LTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLL 98

Query: 259 AFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 311
                            +  + P + +      E+         E    PL++
Sbjct: 99  GELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLVR 151

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 4e-09
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 4/115 (3%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGL-WKLPTGFIDESEEIFKGAVREVKEETGVDTEF 254
              ++ N   ++LV +      A+ G+      G     E      +R  + E GV+   
Sbjct: 5   FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 64

Query: 255 VEVIAFRHAHNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 306
            E I     +          +          ++ ++++D E+   +W    + + 
Sbjct: 65  PESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLH 119

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 187 PGNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVRE 243
             N T  +G+   +         +L+++         G W L  GF+ + E +   A R 
Sbjct: 4   SSNPTFYLGIDCIIFGFNEGEISLLLLKRN--FEPAMGEWSLMGGFVQKDESVDDAAKRV 61

Query: 244 VKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 303
           + E TG++  ++E +    A +    +  +           E   + ++   A W+   E
Sbjct: 62  LAELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINE 121

Query: 304 FVKQPLIQGDCMFKKVIDICIARLRKR 330
               P +  D    +++D     ++++
Sbjct: 122 L---PALIFD--HPEMVDKAREMMKQK 143

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 50.2 bits (119), Expect = 3e-08
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 25/135 (18%)

Query: 194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE 253
             VG  ++N++ ++               W++P G IDE E+    A+RE++EETGV + 
Sbjct: 15  RNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA 70

Query: 254 FVEVIA----------------FRHAHNVAFQKSDLFFICMLKPLSTEIKV-----DDLE 292
            V                         +    ++  +F+        EI +     +  E
Sbjct: 71  EVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPE 130

Query: 293 IKGAKWMPFMEFVKQ 307
                W+   + +  
Sbjct: 131 FGEWSWVTPEQLIDL 145

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 19/117 (16%)

Query: 200 VINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEE-IFKGAVREVKEETGVDTEFVEVI 258
            +     +L++        F G    P GF+D  +  + +G  RE++EE G     VEV 
Sbjct: 38  RVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVT 91

Query: 259 AF------------RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME 303
                         +   +   ++  L  I  ++  +   K   LE+ G   +P   
Sbjct: 92  EDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYT 148

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 4/115 (3%)

Query: 195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTE 253
                V +   ++LV +         G+      G +   E++ + A RE +EE G+   
Sbjct: 32  ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 91

Query: 254 FVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 308
                   +  +   +     F C+         + + E+    W+   E   + 
Sbjct: 92  PFAEHGQFYFEDKNCRVWGALFSCV---SHGPFALQEDEVSEVCWLTPEEITARC 143

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 2/111 (1%)

Query: 196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEF 254
           V  F+ N   ++ + +       F     +   G +   E   +   RE +EE  V+ + 
Sbjct: 31  VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 90

Query: 255 VEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV 305
           +               S    +  L+        +  +I G +W+     +
Sbjct: 91  LSWRPLASFSPFQTTLSSFMCVYELRS-DATPIFNPNDISGGEWLTPEHLL 140

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 4e-07
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 197 GGFVINDNN-----EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 251
           G  +++  +     + + ++ K C     G W +P G +D  E+I     RE  EE    
Sbjct: 126 GNKIMHPVSGKHILQFVAIKRKDC-----GEWAIPGGMVDPGEKISATLKREFGEEALNS 180

Query: 252 TEFVEVIAFRHAHNV 266
            +            +
Sbjct: 181 LQKTSAEKREIEEKL 195

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.4 bits (112), Expect = 6e-07
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 180 PDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKG 239
           P G  V      H   V    ++DN  + +V + Y +     LW+LP G +D + E    
Sbjct: 25  PGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQ-YRHTYGRRLWELPAGLLDVAGEPPHL 83

Query: 240 AV-REVKEETGVDTEFVEVIAFRH-AHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAK 297
              RE++EE G+     +V+     A   + +   ++    L+ +       +       
Sbjct: 84  TAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMG 143

Query: 298 WMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCGL 334
           W P  E  ++ +++G+ +    I   +  +     G 
Sbjct: 144 WYPIAEAARR-VLRGEIVNSIAI-AGVLAVHAVTTGF 178

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 194 VGVGGFVI----NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 249
           V   G VI        E L++Q  Y        W  P G +D  E+ ++ A+RE KEE  
Sbjct: 2   VKAAGLVIYRKLAGKIEFLLLQASYPP----HHWTPPKGHVDPGEDEWQAAIRETKEEAN 57

Query: 250 VDTEFVEVIAFRHAHNV--AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 307
           +  E + +    H      A  K       + K  + +      E +  KW    + +K 
Sbjct: 58  ITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKI 117

Query: 308 PLIQGDCMFKKVIDICIARL 327
                      ++    A L
Sbjct: 118 ADYAEM---GSLLRKFSAFL 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.87
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.85
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.85
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.84
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.84
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.83
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.83
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.82
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.8
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.8
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.8
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.8
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.8
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.79
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.79
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.78
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.77
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.77
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.76
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.76
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.75
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.74
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.74
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.73
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.67
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.63
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.57
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.44
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.28
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.27
d2fb1a1	76	Hypothetical protein BT0354, C-terminal domain {Ba	87.14

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.87  E-value=5.2e-22  Score=169.88  Aligned_cols=135  Identities=17%  Similarity=0.322  Sum_probs=101.8

Q ss_pred             CCCCcceeEEEEEEE--eC-CCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 017817          187 PGNATHQVGVGGFVI--ND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA  263 (365)
Q Consensus       187 P~~~~h~v~V~~vVi--n~-~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~  263 (365)
                      +.+|...++|.++|+  ++ +.+|||++|+..  +..|.|.+|||++++||++++||+||++||||+++....+++.+..
T Consensus         4 ~~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~   81 (147)
T d2fb1a2           4 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGA   81 (147)
T ss_dssp             TTSCCEEEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECC
T ss_pred             CCCCCcceEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecC
Confidence            345667788888876  33 347999998643  3679999999999999999999999999999999998888887654


Q ss_pred             ccccCc--cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcc
Q 017817          264 HNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR  330 (365)
Q Consensus       264 ~~~~~~--~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~  330 (365)
                      .....+  ...++|+|.....  ......+|..+++|+++++++++.+.+     .+++..+++++|.+
T Consensus        82 ~~~~~~~~~v~~~~~~~~~~~--~~~~~~~e~~~~~W~~~~~lp~lafDH-----~~ii~~a~~~lr~k  143 (147)
T d2fb1a2          82 IDRDPGERVVSIAYYALININ--EYDRELVQKHNAYWVNINELPALIFDH-----PEMVDKAREMMKQK  143 (147)
T ss_dssp             TTSSSSSCEEEEEEEEECCTT--SSCHHHHHHTTEEEEETTSCCCBSTTH-----HHHHHHHHHHHHHH
T ss_pred             CcccCCCceEEEEEEEEecCC--cccCCCcchhheEEecHHhchhcccCH-----HHHHHHHHHHHHHH
Confidence            332222  3345666665432  233345678899999999999888755     67888888888765

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=7.5e-21  Score=159.19  Aligned_cols=128  Identities=20%  Similarity=0.283  Sum_probs=97.7

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      ++|.+++. +++++||++++..   .+|.|.+|||++|+|||+++||+||++||||+++.....++......  .....+
T Consensus         4 paViv~i~-~~~~vLL~~~~~~---~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~--~~~~~~   77 (131)
T d1vk6a2           4 PCIIVAIR-RDDSILLAQHTRH---RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF--PQSLMT   77 (131)
T ss_dssp             EEEEEEEE-ETTEEEEEEETTT---CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET--TEEEEE
T ss_pred             cEEEEEEE-eCCEEEEEEeccC---CCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccCc--CceEEE
Confidence            45644444 5679999988532   35799999999999999999999999999999998888776543322  233456


Q ss_pred             EEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhccc
Q 017817          274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY  331 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y  331 (365)
                      +|++...  .+++.+++.|+.+++|++++|++.++...  .+.+++|+.+++..+..|
T Consensus        78 ~f~~~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~--~i~r~li~~~l~~~r~~~  131 (131)
T d1vk6a2          78 AFMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPG--TVARRLIEDTVAMCRAEY  131 (131)
T ss_dssp             EEEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTT--SHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEEc--CCcccCCCccEEEEEEEcHHHHhhCCCCh--HHHHHHHHHHHHHHHhcC
Confidence            6666654  35567778899999999999999886544  477888999988877654

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.5e-21  Score=160.73  Aligned_cols=122  Identities=26%  Similarity=0.423  Sum_probs=91.9

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc-CccE
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-FQKS  271 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~-~~~~  271 (365)
                      .++|+++|+|+++++||++++      .|.|.+|||++|+||++.+||+||++||||++++....++........ ....
T Consensus         2 ~v~agavv~~~~~~vLl~~~~------~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~   75 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVERE   75 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECT------TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEE
T ss_pred             EEEEEEEEEECCCEEEEEEcC------CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeEEE
Confidence            478999999999999999874      478999999999999999999999999999999888777654433322 2233


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL  327 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~l  327 (365)
                      .++|++...   .... .++|+.+++|++++++.++...+   ..+.+++.+++++
T Consensus        76 ~~~~~~~~~---~~~~-~~~e~~~~~W~~~~e~~~~~~~~---~~~~il~~~~~~l  124 (126)
T d1vcda1          76 VHWFLMRGE---GAPR-LEEGMTGAGWFSPEEARALLAFP---EDLGLLEVALERL  124 (126)
T ss_dssp             EEEEEEEEE---SCCC-CCTTCCEEEEECHHHHHHHBCSH---HHHHHHHHHHHHS
T ss_pred             EEEEEEEEc---CCCC-CCccceEEEEEEHHHHhhccCCh---HHHHHHHHHHHhC
Confidence            345555442   2222 35688899999999998875443   2367788777654

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.84  E-value=1.4e-20  Score=161.12  Aligned_cols=121  Identities=25%  Similarity=0.316  Sum_probs=88.9

Q ss_pred             cceeEEEEEEEeCCCeEEEEeeecCC--CCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-cc
Q 017817          191 THQVGVGGFVINDNNEVLVVQEKYCN--PAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-VA  267 (365)
Q Consensus       191 ~h~v~V~~vVin~~g~VLLvrr~~~~--~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~-~~  267 (365)
                      .+..+++++++|++|+|||++|+..+  ....|.|.+|||++|+||++.+||+||++||||++++...+++.+.... ..
T Consensus        10 ~~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~~~~   89 (158)
T d1sjya_          10 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG   89 (158)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred             CceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEECCCC
Confidence            34456888889999999999986432  2357899999999999999999999999999999999888887654332 22


Q ss_pred             CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      ......+|++............++|+.+++|++++|+.++....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~  133 (158)
T d1sjya_          90 VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  133 (158)
T ss_dssp             CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             CEEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhCC
Confidence            22333445555443333233345799999999999998865443

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.84  E-value=1.5e-20  Score=158.72  Aligned_cols=127  Identities=20%  Similarity=0.215  Sum_probs=91.3

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE--
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS--  271 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~--  271 (365)
                      ++|+++| ..++++||+++...+  ..+.|.+|||++|.||++.+||+||++||||+++.....++.........+..  
T Consensus         4 v~va~ii-~~~~k~Llv~r~~~~--~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   80 (146)
T d2b0va1           4 VTVAAVI-EQDDKYLLVEEIPRG--TAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYL   80 (146)
T ss_dssp             EEEEEEC-EETTEEEEEEECSSS--SCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEE-EeCCEEEEEEEecCC--CCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEEE
Confidence            5565555 456899999985432  57899999999999999999999999999999998888887765554444433  


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  324 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l  324 (365)
                      .++|.+....... ....++|+.+++|++++|+.+++.......+.+++..++
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~~~~~~~~v~~~l~~y~  132 (146)
T d2b0va1          81 RFTFSGQVVSFDP-DRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYH  132 (146)
T ss_dssp             EEEEEEEEEEECT-TSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHH
T ss_pred             EEEEEEEeecCCC-CCCCCcceeEEEEeeHHHHhhCccccCCHHHHHHHHHHH
Confidence            2334444332222 233567899999999999988776654445555555554

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.6e-20  Score=165.38  Aligned_cols=156  Identities=16%  Similarity=0.128  Sum_probs=114.4

Q ss_pred             hhhhcceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeCCC
Q 017817          130 FSLIHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNN  205 (365)
Q Consensus       130 ~sl~~W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~~g  205 (365)
                      ++++.|+..+++.|    ||++...+.++++.   ....|+...                    ..+..+|.++.. .++
T Consensus         4 ~~~~k~~il~~~~v~~~~~f~v~~~~v~~p~G---~~~~~~~~~--------------------~~~~~~v~vi~~-~~~   59 (186)
T d1vhza_           4 KSLQKPTILNVETVARSRLFTVESVDLEFSNG---VRRVYERMR--------------------PTNREAVMIVPI-VDD   59 (186)
T ss_dssp             CCCCCCEEEEEEEEEECSSCEEEEEEEECTTS---CEEEEEEEC--------------------CCCCCEEEEEEE-ETT
T ss_pred             ccCcCCEEeeeEEEEeCCEEEEEEEEEEcCCC---CEEEEEEEE--------------------eCCCcEEEEEEc-cCC
Confidence            45778888888777    99999999999983   222232210                    011233444444 467


Q ss_pred             eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCcc
Q 017817          206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTE  285 (365)
Q Consensus       206 ~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~  285 (365)
                      ++||+++ ++++.....|+||||++|+||++++||+||++||||+.+..+..++.+...++.......+|++..... ..
T Consensus        60 ~vlLvrq-~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~~a~~~~~-~~  137 (186)
T d1vhza_          60 HLILIRE-YAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYP-ES  137 (186)
T ss_dssp             EEEEEEE-EETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEEE-CC
T ss_pred             EEEEEEe-eecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEEEEEEEeccc-cc
Confidence            8999987 677778888999999999999999999999999999999999999887776666555545554443222 33


Q ss_pred             ccCCccceeeEEEEcccccccCCCCc
Q 017817          286 IKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       286 i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                      ...+++|..++.|+|++|+.++....
T Consensus       138 ~~~de~E~~~~~~~~~~e~~~~i~~g  163 (186)
T d1vhza_         138 LEGDEPEPLPQVRWPLAHMMDLLEDP  163 (186)
T ss_dssp             CCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             CCCCCCcEEEEEEEeHHHHHHHHHcC
Confidence            45677899999999999998875543

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.83  E-value=1.6e-20  Score=162.99  Aligned_cols=117  Identities=21%  Similarity=0.321  Sum_probs=84.2

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-----Eee---
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-----RHA---  263 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~-----~~~---  263 (365)
                      .+++|+++|+|++++|||++|..    .+|.|.+|||+||.||++++||+||++||||+++........     ...   
T Consensus        13 yR~~Vg~vI~n~~~~vLL~kR~~----~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   88 (165)
T d1jkna_          13 YRRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKV   88 (165)
T ss_dssp             EEEEEEEEEECTTSCEEEEEESS----STTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHH
T ss_pred             ccccEEEEEEeCCCEEEEEEEcC----CCCcccCccceEcCCCChhHHHHHHHHHhhcccccccccccccccccccccee
Confidence            47899999999999999999863    358999999999999999999999999999999876543321     100   


Q ss_pred             --------ccccCccEEEEEEEEEecCCccccC-----CccceeeEEEEcccccccCCCCcC
Q 017817          264 --------HNVAFQKSDLFFICMLKPLSTEIKV-----DDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       264 --------~~~~~~~~~~~f~~~l~~~~~~i~~-----~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                              ..........+|++.......++++     ...|+.+++|+++++++++.....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i~~fk  150 (165)
T d1jkna_          89 REKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFK  150 (165)
T ss_dssp             HHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHSCGGG
T ss_pred             eceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhcchhh
Confidence                    0111123344555555433333332     234899999999999998755544

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=2.6e-20  Score=167.55  Aligned_cols=149  Identities=17%  Similarity=0.221  Sum_probs=105.3

Q ss_pred             ceecCeEEE----EEEeeccccccchHHHhcceeeecCCcceeeccccccCCCCCCCCCCcceeEEEEEEEeCCCeEEEE
Q 017817          135 WRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVV  210 (365)
Q Consensus       135 W~~~~~r~v----Wl~l~~~~~~l~~~a~~~gF~~hh~~~~y~~l~~wl~~~~~~lP~~~~h~v~V~~vVin~~g~VLLv  210 (365)
                      |+..+++.|    |+++..+...+++..   -..|+..     .                 +..+|+++++++++++||+
T Consensus         1 ~~~l~s~~v~~~~~~~v~~d~v~~pdG~---~~~~~~v-----~-----------------~~~~V~vl~~~~~~~ilLv   55 (202)
T d1mqea_           1 FETISSETLHTGAIFALRRDQVRMPGGG---IVTREVV-----E-----------------HFGAVAIVAMDDNGNIPMV   55 (202)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEEC--------CEEEEEE-----E-----------------ECCEEEEEECCTTSEEEEE
T ss_pred             CeEccEEEEEECCEEEEEEEEEECCCCC---EEEEEEE-----E-----------------cCCeEEEEEECCCCEEEEE
Confidence            778888877    999999999999853   2333322     1                 1235778888999999999


Q ss_pred             eeecCCCCCCCceEeceeeec-CCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEEEEEecCCcccc-C
Q 017817          211 QEKYCNPAFAGLWKLPTGFID-ESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIK-V  288 (365)
Q Consensus       211 rr~~~~~~~~g~W~lPGG~ve-~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~~~l~~~~~~i~-~  288 (365)
                      ++ ++++.+...|+||+|.+| +||++++||+||++||||+.++.+..++.+...++.......+|++.......... .
T Consensus        56 rq-~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~~~~~fla~~~~~~~~~~~~  134 (202)
T d1mqea_          56 YQ-YRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAH  134 (202)
T ss_dssp             EE-EETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC----
T ss_pred             Ee-cccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccCCcEEEEEEEEeccccCCCCCC
Confidence            88 566667778999999999 79999999999999999999999999988777766666555556555433222222 2


Q ss_pred             CccceeeEEEEcccccccCCC
Q 017817          289 DDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       289 ~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      +++|..++.|++++|+.++..
T Consensus       135 ~eee~i~v~w~~~~e~~~~i~  155 (202)
T d1mqea_         135 HEEADMTMGWYPIAEAARRVL  155 (202)
T ss_dssp             ------CEEEEEHHHHHHHHT
T ss_pred             CccceEEEEEEEHHHHHHHHH
Confidence            345566899999999988654

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=3.5e-19  Score=159.92  Aligned_cols=140  Identities=21%  Similarity=0.299  Sum_probs=97.3

Q ss_pred             CCCCCCCCcceeEEEEEEE--eCC---CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceee--
Q 017817          183 PCVLPGNATHQVGVGGFVI--NDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--  255 (365)
Q Consensus       183 ~~~lP~~~~h~v~V~~vVi--n~~---g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~--  255 (365)
                      ++.+|.|+.+.++|.++|+  +.+   .+|||++|+..  ++.|.|.+|||++++||++.+||+||++||||+++...  
T Consensus        27 ~~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~--p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l  104 (202)
T d2fmla2          27 QQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENI  104 (202)
T ss_dssp             TSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred             cccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCC--CCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeeccee
Confidence            3456788888888887775  432   37999999643  36799999999999999999999999999999987543  


Q ss_pred             EEEEEEeec-cccCc-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCC-----------------------CC
Q 017817          256 EVIAFRHAH-NVAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP-----------------------LI  310 (365)
Q Consensus       256 ~ll~~~~~~-~~~~~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~-----------------------~~  310 (365)
                      ..+..+... ....+ ...++|++...  ... ....+|+.+++|+++++++...                       +.
T Consensus       105 ~~~~~~~~~~r~~~~~~i~~~~~~~~~--~~~-~~~~~e~~~~~Wf~ld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~La  181 (202)
T d2fmla2         105 EQLHSFSRPDRDPRGWVVTVSYLAFIG--EEP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLA  181 (202)
T ss_dssp             EEEEEECCTTSSTTSSEEEEEEEEECC--CCC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCS
T ss_pred             eeeeecccCCccccceEEEEEEEEEeC--CCC-cCCCcceeeEEEEeHHHCcchhcccchhhhhhhhhhhhccccCCCcc
Confidence            333333221 12222 23445554432  222 2356789999999999986521                       12


Q ss_pred             cCCchHHHHHHHHHHHHhcc
Q 017817          311 QGDCMFKKVIDICIARLRKR  330 (365)
Q Consensus       311 ~~~~~~~~il~~~l~~lr~~  330 (365)
                      .+|   .+||+.+++++|.+
T Consensus       182 FDH---~~Ii~~Al~Rlr~k  198 (202)
T d2fmla2         182 FDH---SEIIIKAFNRVVDK  198 (202)
T ss_dssp             TTH---HHHHHHHHHHHHHH
T ss_pred             cCH---HHHHHHHHHHHHHh
Confidence            222   57899999998876

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.2e-20  Score=155.10  Aligned_cols=112  Identities=19%  Similarity=0.270  Sum_probs=84.6

Q ss_pred             EEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEEE
Q 017817          197 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFI  276 (365)
Q Consensus       197 ~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f~  276 (365)
                      ++++++++++|||+||... ...+|.|.||||++|.||++.+||+||++||||++++...++...............+|.
T Consensus         8 v~ii~~~~~~vLl~~R~~~-~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
T d1puna_           8 VGIIRNENNEIFITRRAAD-AHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWL   86 (129)
T ss_dssp             EEECBCTTSCEEEBCCCSS-CSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEecCC-CCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccccceeEEEEE
Confidence            3566778899999998643 446899999999999999999999999999999999877776665544443333333333


Q ss_pred             EEEecCCccccCCccceeeEEEEcccccccCCCCcCC
Q 017817          277 CMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD  313 (365)
Q Consensus       277 ~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~  313 (365)
                      |.  ...++  +...|+.+++|++++++.++++++.+
T Consensus        87 ~~--~~~~~--~~~~E~~~~~W~~~~el~~~~~~~~~  119 (129)
T d1puna_          87 VE--RWEGE--PWGKEGQPGEWMSLVGLNADDFPPAN  119 (129)
T ss_dssp             CC--CCSSC--CCTTSSSCCEEECGGGCCTTTSCGGG
T ss_pred             Ee--eccCc--CCCCccceEEEEEHHHcccCCCCcch
Confidence            32  22333  34567889999999999999887754

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.7e-19  Score=153.54  Aligned_cols=117  Identities=15%  Similarity=0.203  Sum_probs=84.4

Q ss_pred             eeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEee-ccc---
Q 017817          193 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHA-HNV---  266 (365)
Q Consensus       193 ~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~--~~ll~~~~~-~~~---  266 (365)
                      .++|+++|.|.+++|||++|+..  +++|.|.+|||++++||++.+||+||++||||++++.  ...++.... ...   
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~--~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   95 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS   95 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSS--SSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTT
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCC--CCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEecccccc
Confidence            46888899999999999999643  3688999999999999999999999999999998754  233333221 111   


Q ss_pred             --cCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCc
Q 017817          267 --AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ  311 (365)
Q Consensus       267 --~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~  311 (365)
                        ......+.+.+............++|+.+++|++++|+..++..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~~~  142 (160)
T d1ryaa_          96 GTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVH  142 (160)
T ss_dssp             BSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBC
T ss_pred             CCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcCcccc
Confidence              111222333334333344455567899999999999998876655

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.2e-19  Score=156.04  Aligned_cols=112  Identities=16%  Similarity=0.317  Sum_probs=83.6

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEe-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE---Eeec-cccCc
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF---RHAH-NVAFQ  269 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~---~~~~-~~~~~  269 (365)
                      +|+++|+|++|++||+||...+..++|.|.+ |||++++||++.+||+||++|||||++.....+..   +... +....
T Consensus         4 a~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~   83 (153)
T d1hzta_           4 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIV   83 (153)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCE
T ss_pred             EEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceecccccccccccccc
Confidence            4788999999999999997666668999987 99999999999999999999999999877665531   1111 11111


Q ss_pred             cEEEEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          270 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       270 ~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      ...+++++... ...++.++++|+.+++|++++|+.+.
T Consensus        84 ~~~~~~~~~~~-~~~~~~~~~~Ev~~~~W~~~~el~~~  120 (153)
T d1hzta_          84 ENEVCPVFAAR-TTSALQINDDEVMDYQWCDLADVLHG  120 (153)
T ss_dssp             EEEECCEEEEE-BCSCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             ceeEEEEEEEe-eCCCccCChhheeEEEEeeHHHHHHH
Confidence            22222222222 24567777889999999999999765

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.9e-19  Score=152.93  Aligned_cols=113  Identities=15%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      .+|.++++|.+|+|||++|...+..++|.|++| ||++++||++++||+||++|||||+......++.+...........
T Consensus        31 ~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~  110 (161)
T d2fkba1          31 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG  110 (161)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecCCcEEEE
Confidence            357888999999999999976666688999987 8999999999999999999999999877777765443332222222


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCC
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      .+|.+.   ..+++.++++|+.+++|++++|+.+++.
T Consensus       111 ~~~~~~---~~~~~~~~~~Ev~~~~w~~~~el~~~~~  144 (161)
T d2fkba1         111 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARCD  144 (161)
T ss_dssp             EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTGG
T ss_pred             EEEEEE---ECCCCcCChhHeeEEEEEeHHHHhhhhh
Confidence            333332   2356677889999999999999988643

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.79  E-value=5.9e-20  Score=156.86  Aligned_cols=109  Identities=23%  Similarity=0.249  Sum_probs=71.2

Q ss_pred             EEEEEEEeCC-CeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          195 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       195 ~V~~vVin~~-g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      .+||+++|.+ ++|||+|+..    ..+.|.||||++|.||++.+||+||++||||+++.................. ..
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~----~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~-~~   78 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWK----ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQN-VR   78 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESS----TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTEE-EE
T ss_pred             EEEEEEEECCCCEEEEEEEeC----CCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeecccCce-EE
Confidence            4688888865 7899999842    3678999999999999999999999999999987643322111111111122 23


Q ss_pred             EEEEEEecCCccc-cCCccceeeEEEEcccccccCC
Q 017817          274 FFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       274 ~f~~~l~~~~~~i-~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      +|++......... ..+.+|+.+++|++++|++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~  114 (151)
T d2a6ta2          79 LYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFK  114 (151)
T ss_dssp             EEEECCCCTTCCCC------EEEEEEEEGGGSTTCC
T ss_pred             EEEEEEeccCCcccccCCCccceEEEEEHHHhhhhh
Confidence            3333332222322 2346799999999999998754

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.8e-19  Score=151.17  Aligned_cols=126  Identities=16%  Similarity=0.150  Sum_probs=86.7

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      +++.+. +++..+++|||++|+.+  .+.|.|.+|||++|+||++.+||+||++||||+++.....++............
T Consensus         4 ~r~~~~-v~i~~~~~vLL~~r~~~--~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d1irya_           4 SRLYTL-VLVLQPQRVLLGMKKRG--FGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL   80 (156)
T ss_dssp             CEEEEE-ECEECSSEEEEEEESSS--SSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCE
T ss_pred             cEEEEE-EEEEECCEEEEEEecCC--CCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCCEE
Confidence            345454 44456789999998643  367999999999999999999999999999999998777776544433333333


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      ...+++......++  +...|..+++|+++++++.+++.+.+   +..+...++
T Consensus        81 ~~~~~~~~~~~~~~--~~~~ee~~~~W~~~~~l~~~~~~~~d---~~~l~~~l~  129 (156)
T d1irya_          81 MDVHVFCTDSIQGT--PVESDEMRPCWFQLDQIPFKDMWPDD---SYWFPLLLQ  129 (156)
T ss_dssp             EEEEEECCCCBCSC--CCCCSSEEEEEEETTCCCSTTTCSSH---HHHHHHHHH
T ss_pred             EEEEEEEEEeecCc--ccCCchhheEEeEHHHCCcCCCCccH---HHHHHHHhC
Confidence            33333333322233  33445567899999999998887654   344444443

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=5.9e-19  Score=152.57  Aligned_cols=111  Identities=18%  Similarity=0.232  Sum_probs=78.4

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL  273 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~  273 (365)
                      .+|++++++ ++++||+++ ++++.+...|++|||.+|+||++++||+||++||||+.++.. .++.....++..+....
T Consensus        25 ~aV~vl~~~-~~~vlLv~q-~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~-~l~~~~~~~g~~~~~~~  101 (158)
T d1v8ya_          25 PAVAVIALR-EGRMLFVRQ-MRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLT-YLFSYFVSPGFTDEKTH  101 (158)
T ss_dssp             CEEEEEEEE-TTEEEEEEC-CBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEESCTTTBCCEEE
T ss_pred             CEEEEEEEE-CCEEEEEEe-eecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceee-eecceecCCCcceEEEE
Confidence            457777776 679999988 577778889999999999999999999999999999988643 44444444554454555


Q ss_pred             EEEEEEecCCccccCCccceeeEEEEcccccccCC
Q 017817          274 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       274 ~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      +|++..... ....++++|..++.|++++|+.++.
T Consensus       102 ~f~a~~~~~-~~~~~d~~E~~ev~w~~~~e~~~~i  135 (158)
T d1v8ya_         102 VFLAENLKE-VEAHPDEDEAIEVVWMRPEEALERH  135 (158)
T ss_dssp             EEEEEEEEE-CC--------CEEEEECHHHHHHHH
T ss_pred             EEEEccccc-cccCCCCCeeEEEEEEEHHHHHHHH
Confidence            555544322 3445667888999999999998864

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.77  E-value=1.2e-18  Score=150.59  Aligned_cols=113  Identities=14%  Similarity=0.239  Sum_probs=82.6

Q ss_pred             eEEEEEEEeCCCeEEEEeeecCCCCCCCceEec-eeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          194 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       194 v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      .+|+++++|++|++||.+|...+...+|.|.+| ||++++||++.+||+||++||||+++.....+......+.......
T Consensus        29 ~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~  108 (162)
T d2o5fa1          29 RVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSS  108 (162)
T ss_dssp             EEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSCSS
T ss_pred             EEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEeccccccceE
Confidence            468889999999999998876666789999887 9999999999999999999999999987777655544433333222


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccC
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ  307 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~  307 (365)
                      .++++.... ...+.++++|+.+++|++++|+.++
T Consensus       109 ~~~~~~~~~-~~~~~~~~~Ev~~~~W~~~eel~~~  142 (162)
T d2o5fa1         109 FMCVYELRS-DATPIFNPNDISGGEWLTPEHLLAR  142 (162)
T ss_dssp             EEEEEEEEC-SSCCCCCTTTCSEEEEECHHHHHHH
T ss_pred             EEEEEEEec-CCCccCChhHeeEEEEeeHHHHHHH
Confidence            333333332 3456677889999999999999765

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=2.3e-18  Score=143.19  Aligned_cols=125  Identities=22%  Similarity=0.321  Sum_probs=84.7

Q ss_pred             EEEEEEEe---CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec---cccC
Q 017817          195 GVGGFVIN---DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH---NVAF  268 (365)
Q Consensus       195 ~V~~vVin---~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~---~~~~  268 (365)
                      +++++|++   ++.++||+++++    .+|.|.+|||++|+||++.+||+||++||||+++.....+......   ....
T Consensus         4 aag~vv~~~~~~~~~~Ll~~r~~----~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   79 (137)
T d1ktga_           4 AAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG   79 (137)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETT
T ss_pred             EEEEEEEEEcCCCEEEEEEEEcC----CCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCc
Confidence            46666664   234789998853    3589999999999999999999999999999998876665432221   1111


Q ss_pred             c-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHh
Q 017817          269 Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR  328 (365)
Q Consensus       269 ~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr  328 (365)
                      . ....+|++.. ....++. .++|+.+++|++++++.++....   ..+.+++.+.+.+.
T Consensus        80 ~~~~~~~~~~~~-~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~---~~~~~l~~~~~~L~  135 (137)
T d1ktga_          80 KPKSVKYWLAKL-NNPDDVQ-LSHEHQNWKWCELEDAIKIADYA---EMGSLLRKFSAFLA  135 (137)
T ss_dssp             EEEEEEEEEEEE-CSCCCCC-CCTTEEEEEEECHHHHHHHHCCH---HHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEEe-cCCCCcC-CCcceEEEEEEEHHHHHHhcCCH---HHHHHHHHHHHHhc
Confidence            1 2223333333 2223343 35789999999999998764332   34677777777664

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.76  E-value=3e-19  Score=150.81  Aligned_cols=125  Identities=22%  Similarity=0.334  Sum_probs=82.1

Q ss_pred             EEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---ccCccE
Q 017817          195 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN---VAFQKS  271 (365)
Q Consensus       195 ~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~---~~~~~~  271 (365)
                      .++++|++ +++|||++|+     ..|.|.+|||++|+||++.+||+||++||||++++....+.......   ......
T Consensus         3 ~a~~vi~~-d~kvLl~~r~-----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   76 (152)
T d1k2ea_           3 VTSGVLVE-NGKVLLVKHK-----RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLV   76 (152)
T ss_dssp             EEEEECEE-TTEEEEEECT-----TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSE
T ss_pred             EEEEEEEE-CCEEEEEEEc-----CCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEE
Confidence            35555554 6899999985     46789999999999999999999999999999987655443221111   111111


Q ss_pred             EEEEEEEEecCCc--------cccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817          272 DLFFICMLKPLST--------EIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  329 (365)
Q Consensus       272 ~~~f~~~l~~~~~--------~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~  329 (365)
                      ...+.... ....        ...++.+|+.+++|++++|+.++...+.   .+.++..+++.+.+
T Consensus        77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~  138 (152)
T d1k2ea_          77 ILEEVVKY-PEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPN---VRKVVSLALSTLYR  138 (152)
T ss_dssp             EEEEEEEC-SSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTT---HHHHHHHHHHHHHH
T ss_pred             EEEEEEec-CCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHH---HHHHHHHHHHHHhh
Confidence            11111111 1110        1123467889999999999999877654   36677776665543

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.76  E-value=3.2e-18  Score=146.54  Aligned_cols=115  Identities=13%  Similarity=0.156  Sum_probs=79.7

Q ss_pred             eEEEEEEEe-CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          194 VGVGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       194 v~V~~vVin-~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      ++..+++++ +++++||++|.... ...+.|.+|||++|+||++.+||+||++||||+++....+++.......... ..
T Consensus         9 ~~~~~~i~~~~~~~lLl~~R~~~~-~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~-~~   86 (155)
T d2b06a1           9 LTNICLIEDLETQRVVMQYRAPEN-NRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGG-RY   86 (155)
T ss_dssp             EEEEEEEEETTTTEEEEEEEC------CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSC-EE
T ss_pred             EEEEEEEEECCCCEEEEEEECCCC-CCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCC-eE
Confidence            444455556 55788888875333 2446799999999999999999999999999999998888876554433322 22


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcC
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG  312 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~  312 (365)
                      +.+++......+.  +...|..+++|+++++++++++...
T Consensus        87 ~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~l~~~~~  124 (155)
T d2b06a1          87 IVICYKATEFSGT--LQSSEEGEVSWVQKDQIPNLNLAYD  124 (155)
T ss_dssp             EEEEEEECEEEEC--CCCBTTBEEEEEEGGGGGGSCBCTT
T ss_pred             EEEEEEEEecCCc--cCCCchheEEEEEHHHhccCCCCch
Confidence            2222222222233  3456778999999999999887765

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.75  E-value=1.3e-18  Score=146.82  Aligned_cols=125  Identities=16%  Similarity=0.120  Sum_probs=83.1

Q ss_pred             ceeEEEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccC---
Q 017817          192 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF---  268 (365)
Q Consensus       192 h~v~V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~---  268 (365)
                      .+++|+++|+++++++||+.++     ..+.|.+|||++|+||++.+||+||++||||+++.....++.........   
T Consensus        16 ~r~~~~~vi~~~~~~~lll~~~-----~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   90 (147)
T d2azwa1          16 TRYAAYIIVSKPENNTMVLVQA-----PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQ   90 (147)
T ss_dssp             ECCEEEEECEEGGGTEEEEEEC-----TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTT
T ss_pred             CCCeEEEEEEECCCCEEEEEEc-----CCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeeccCC
Confidence            3467888888877665555553     35789999999999999999999999999999998877776543322111   


Q ss_pred             c-cEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          269 Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       269 ~-~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      . .....+++....... .....+|+.+++|++++++.++....   ..+.+++.+++
T Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~e~~~~l~~~---~~r~~l~~~la  144 (147)
T d2azwa1          91 TAYYNPGYFYVANTWRQ-LSEPLERTNTLHWVAPEEAVRLLKRG---SHRWAVEKWLA  144 (147)
T ss_dssp             EEEEEEEEEEEEEEEEE-CSSCC-CCSEEEEECHHHHHHHBSCH---HHHHHHHHHHH
T ss_pred             ceEEEEEEEEEEEeccc-cCCCCccceEEEEEEHHHHHHHcCCh---hHHHHHHHHHh
Confidence            1 112222222222222 22345678899999999988764433   23566766654

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-17  Score=142.41  Aligned_cols=129  Identities=19%  Similarity=0.282  Sum_probs=92.9

Q ss_pred             eeEEEEEEE---------eCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE--
Q 017817          193 QVGVGGFVI---------NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR--  261 (365)
Q Consensus       193 ~v~V~~vVi---------n~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~--  261 (365)
                      ..++|++++         +++.++||+++.+    +.+.|.+|||++++||++.+||+||++||||+++.....+..+  
T Consensus         8 ~~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~----~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~   83 (153)
T d1xsba_           8 LRACGLIIFRRCLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKR   83 (153)
T ss_dssp             EEEEEEEEEEECSSCSSSSTTEEEEEEEESS----TTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCE
T ss_pred             hheeEEEEEeccccccccCCCCEEEEEEecC----CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeecccee
Confidence            355778887         4668999999864    3567999999999999999999999999999998776665421  


Q ss_pred             --eeccccCccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhc
Q 017817          262 --HAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK  329 (365)
Q Consensus       262 --~~~~~~~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~  329 (365)
                        ............+|.+........+. ..+|+.+++|++++|+.++...+   -.+.+|..+.+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~---~~~~iL~~~~~~L~~  149 (153)
T d1xsba_          84 ELNYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLCS  149 (153)
T ss_dssp             EEEEESSSCEEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHTCSH---HHHHHHHHHHHHHTT
T ss_pred             eecccccCceeEEEEEEEEEeecccccC-CCcceeEEEEEEHHHHHHhcCCH---HHHHHHHHHHHHHhc
Confidence              11112222334455555544444444 35789999999999999876533   357788888877754

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.7e-18  Score=143.31  Aligned_cols=111  Identities=18%  Similarity=0.275  Sum_probs=77.5

Q ss_pred             eEEEEEEEe--CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccE
Q 017817          194 VGVGGFVIN--DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS  271 (365)
Q Consensus       194 v~V~~vVin--~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~  271 (365)
                      ..+++++++  .++.+||++++.    .++.|.+|||++++||++.+||+||++||||+++....+++..........  
T Consensus        12 ~~a~~vv~~~~~~~~~lL~~~~~----~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~--   85 (135)
T d2fvva1          12 KRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHR--   85 (135)
T ss_dssp             EEEEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEE--
T ss_pred             eEEEEEEEEecCCCEEEEEEEeC----CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCcc--
Confidence            346667775  345667776642    468899999999999999999999999999999988888776554433322  


Q ss_pred             EEEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817          272 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       272 ~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      ..++.+.............+|+.+++|++++|+.++...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~  124 (135)
T d2fvva1          86 TYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY  124 (135)
T ss_dssp             EEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred             EEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHhc
Confidence            222222222222333334678889999999999887443

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.73  E-value=5.1e-18  Score=150.51  Aligned_cols=117  Identities=18%  Similarity=0.154  Sum_probs=86.3

Q ss_pred             eEEEEEEEe-CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEE
Q 017817          194 VGVGGFVIN-DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD  272 (365)
Q Consensus       194 v~V~~vVin-~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~  272 (365)
                      .+|.+++++ .+.+|||++|.......+|.|.||||++|+||++.+||+||++||||++....++++........++...
T Consensus        33 aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~V  112 (187)
T d1nqza_          33 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHV  112 (187)
T ss_dssp             EEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEE
T ss_pred             cEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccccEE
Confidence            445444453 3457999999755444799999999999999999999999999999999999999987665555555555


Q ss_pred             EEEEEEEecCCccccCCccceeeEEEEcccccccCCCC
Q 017817          273 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI  310 (365)
Q Consensus       273 ~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~  310 (365)
                      ..|++.+..........++|+.++.|+|++++.+.+..
T Consensus       113 ~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~~~~~  150 (187)
T d1nqza_         113 TPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLV  150 (187)
T ss_dssp             EEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCCE
T ss_pred             EEEEEEECCccccccccCCcceEEEeccHHHHhcCccc
Confidence            55677665443344456789999999999999876543

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.2e-16  Score=143.95  Aligned_cols=115  Identities=15%  Similarity=0.073  Sum_probs=86.9

Q ss_pred             eEEEEEEEeC-CCeEEEEeeecCCCC-----CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecccc
Q 017817          194 VGVGGFVIND-NNEVLVVQEKYCNPA-----FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA  267 (365)
Q Consensus       194 v~V~~vVin~-~g~VLLvrr~~~~~~-----~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~  267 (365)
                      .+|+++++++ +++++|+++ ++++.     ....|++|+|.+|+||++++||+||++||||+.+..+..++.+...++.
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ-~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~spg~  136 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQ-IRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG  136 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEE-ECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT
T ss_pred             CEEEEEEEEecCCeEEEEEE-EeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccCCcc
Confidence            4577788875 578999988 55543     3457999999999999999999999999999999999999988887777


Q ss_pred             CccEEEEEEEEEecCC-c--cccCCccceeeEEEEcccccccCCC
Q 017817          268 FQKSDLFFICMLKPLS-T--EIKVDDLEIKGAKWMPFMEFVKQPL  309 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~-~--~i~~~~~Ei~~~~Wv~leEl~~~~~  309 (365)
                      ......+|++...... .  ....+++|..++.|++++|+.++..
T Consensus       137 ~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~  181 (209)
T d1g0sa_         137 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVE  181 (209)
T ss_dssp             BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHH
T ss_pred             cCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHH
Confidence            7766677777643221 1  1123567778899999999987643

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.63  E-value=1.2e-15  Score=126.34  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=83.8

Q ss_pred             EEEEEEeCCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccccCccEEEEE
Q 017817          196 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF  275 (365)
Q Consensus       196 V~~vVin~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~~~~~~~~~f  275 (365)
                      ++++++|++|++|+.||... ..+.|+|+||||.++.+|+ .+++.||++||+|+++.....++...+....+.....+|
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~-~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~~~~~~   84 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDST-GLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVF   84 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSS-STTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSSEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEECCCC-CCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCCeEEEEEEE
Confidence            44566789999999998643 4578999999999997777 789999999999999887776776665555555444455


Q ss_pred             EEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHH
Q 017817          276 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA  325 (365)
Q Consensus       276 ~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~  325 (365)
                      .|....  .     ..+..+++|++++++.+++++.   ..+++++.+.+
T Consensus        85 ~~~~~~--~-----~~~~~~~~Wv~~~el~~~~~p~---~~~Ki~~~~~~  124 (127)
T d1rrqa2          85 PGRLVH--G-----GPVEEPYRLAPEDELKAYAFPV---SHQRVWREYKE  124 (127)
T ss_dssp             EEEEEC--C-----SCCCTTEEEEEGGGGGGSCCCH---HHHHHHHHHHH
T ss_pred             EEEECC--C-----CccccceEEeeHHHHhHCCCCh---HHHHHHHHHHH
Confidence            555432  1     1233578999999999999876   44677776654

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3.3e-15  Score=132.34  Aligned_cols=113  Identities=17%  Similarity=0.104  Sum_probs=82.8

Q ss_pred             eEEEEEEEe-CCCeEEEEeeecCCCC------CCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccc
Q 017817          194 VGVGGFVIN-DNNEVLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV  266 (365)
Q Consensus       194 v~V~~vVin-~~g~VLLvrr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~ll~~~~~~~~  266 (365)
                      -+|++++++ ++++++|+++ +|++.      ....|++|||.+| ||++++||+||+.||||+.+..+..++.+...++
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ-~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG  121 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQ-FRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG  121 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEE-ECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTT
T ss_pred             CEEEEEEEEcCCCEEEEEEe-eccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCcc
Confidence            368888887 4689999988 55443      4567889999998 6678999999999999999999999988777777


Q ss_pred             cCccEEEEEEEEEecCCc--cccCCccceeeEEEEcccccccCC
Q 017817          267 AFQKSDLFFICMLKPLST--EIKVDDLEIKGAKWMPFMEFVKQP  308 (365)
Q Consensus       267 ~~~~~~~~f~~~l~~~~~--~i~~~~~Ei~~~~Wv~leEl~~~~  308 (365)
                      ......++|++.......  ....+++|..++.|+|++|+.++.
T Consensus       122 ~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i  165 (189)
T d1viua_         122 GVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMI  165 (189)
T ss_dssp             TBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHH
T ss_pred             ccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHH
Confidence            666666667665432211  122356788899999999998764

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.4e-13  Score=125.44  Aligned_cols=117  Identities=14%  Similarity=0.170  Sum_probs=78.0

Q ss_pred             eEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCcceeeE---------------------EEEEEeec
Q 017817          206 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE---------------------VIAFRHAH  264 (365)
Q Consensus       206 ~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~~~~~~---------------------ll~~~~~~  264 (365)
                      ++||++|+     ..+.|.||||+||+||++.+||+||+.||||+.+....                     ..+.....
T Consensus       140 qvLlIkR~-----d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddp  214 (292)
T d1q33a_         140 QFVAIKRK-----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP  214 (292)
T ss_dssp             EEEEEECT-----TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT
T ss_pred             EEEEEEec-----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeecccccccccccccccc
Confidence            68999986     57899999999999999999999999999999765321                     11211111


Q ss_pred             cccCc--cEEEEEEEEEecCC--cccc-CCccceeeEEEEcccccccCCCCcCCchHHHHHHHHHHHHhcccC
Q 017817          265 NVAFQ--KSDLFFICMLKPLS--TEIK-VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYC  332 (365)
Q Consensus       265 ~~~~~--~~~~~f~~~l~~~~--~~i~-~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l~~lr~~y~  332 (365)
                      .....  ...++|.+......  .... ...+|..+++|++++++..+...+     ..+|+.+.+++...|.
T Consensus       215 rntd~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~~~H-----~~il~~aa~~~~Ah~~  282 (292)
T d1q33a_         215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH-----SQFIKLVAEKRDAHWS  282 (292)
T ss_dssp             TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCSTTH-----HHHHHHHHHHHTCCCC
T ss_pred             CCCCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccchhhH-----HHHHHHHHHHHhcccc
Confidence            11111  22344444443221  1111 235789999999999998875444     6788888877765553

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.28  E-value=7.3e-12  Score=111.07  Aligned_cols=97  Identities=27%  Similarity=0.410  Sum_probs=64.2

Q ss_pred             CCeEEEEeeecCCCCCCCceEeceeeecCCCC-HHHHHHHHHHHHhCCcceeeEEEE--EEeec--cccCccEEEEEEEE
Q 017817          204 NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEE-IFKGAVREVKEETGVDTEFVEVIA--FRHAH--NVAFQKSDLFFICM  278 (365)
Q Consensus       204 ~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs-~~eAAiREv~EETGl~~~~~~ll~--~~~~~--~~~~~~~~~~f~~~  278 (365)
                      +..||+++|      ..|.|.||||++|+||+ +++||+||+.||||+.+....++.  ....+  ........++|++.
T Consensus        42 ~~~vl~~~r------~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~~~~~~~~~~~~~~~v~~fy~~~  115 (196)
T d1u20a1          42 RRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKE  115 (196)
T ss_dssp             CEEEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTTSCEEEEEEEEE
T ss_pred             CcEEEEEEe------cCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEeeEEEEeccCCCCCEEEEEEEEEE
Confidence            345667665      36899999999999996 688999999999999987665432  11121  12222345566655


Q ss_pred             EecCC--------ccccCCccceeeEEEEccccccc
Q 017817          279 LKPLS--------TEIKVDDLEIKGAKWMPFMEFVK  306 (365)
Q Consensus       279 l~~~~--------~~i~~~~~Ei~~~~Wv~leEl~~  306 (365)
                      +....        ........|+.++.|+|+.++.+
T Consensus       116 ~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1         116 LKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             CCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             cchHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            42210        11122346889999999999865

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-11  Score=103.20  Aligned_cols=124  Identities=16%  Similarity=0.195  Sum_probs=84.2

Q ss_pred             eeEEEEEEEe---CCCeEEEEeeecCCCCCCCceEeceeeecCCCCHHHHHHHHHHHHhCCc--ceeeEEEEEEeecccc
Q 017817          193 QVGVGGFVIN---DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD--TEFVEVIAFRHAHNVA  267 (365)
Q Consensus       193 ~v~V~~vVin---~~g~VLLvrr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGl~--~~~~~ll~~~~~~~~~  267 (365)
                      ...+.+++.+   .+++|||.||... ..+.|+|+||+|.++.||+..++|.||..+|.+..  +.....++.+.+....
T Consensus        12 ~~~~~~vv~~~~~~~~~iLl~kR~~~-g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH   90 (142)
T d1x51a1          12 ESSATCVLEQPGALGAQILLVQRPNS-GLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH   90 (142)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEECCCC-STTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS
T ss_pred             EEEEEEEEEecCCCCCEEEEEECCCC-CCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCC
Confidence            3444455555   3679999999543 46899999999999999999988887766666543  3444555554444455


Q ss_pred             CccEEEEEEEEEecCCccccCCccceeeEEEEcccccccCCCCcCCchHHHHHHHHH
Q 017817          268 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI  324 (365)
Q Consensus       268 ~~~~~~~f~~~l~~~~~~i~~~~~Ei~~~~Wv~leEl~~~~~~~~~~~~~~il~~~l  324 (365)
                      +.....+|.|.+.  ++..  ...|..+.+|++++++.+++++.   .++++++.+.
T Consensus        91 ~~~~~~v~~~~~~--~~~~--~~~~~~~~~W~~~~el~~~~lp~---~~~Kil~~~~  140 (142)
T d1x51a1          91 IKLTYQVYGLALE--GQTP--VTTVPPGARWLTQEEFHTAAVST---AMKKVFRVYQ  140 (142)
T ss_dssp             CEEEEEEEEEECS--SCCC--CCCCCTTEEEEEHHHHHHSCCCH---HHHHHHHHHH
T ss_pred             cceEEEEEEEEEe--CCCc--ccccCccCEEeeHHHccccCCCH---HHHHHHHHHh
Confidence            4444455555542  2222  34567789999999999988776   4567666654

>d2fb1a1 a.4.5.68 (A:150-225) Hypothetical protein BT0354, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Nudix-associated domain
domain: Hypothetical protein BT0354, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=87.14  E-value=0.058  Score=39.06  Aligned_cols=29  Identities=24%  Similarity=0.150  Sum_probs=23.9

Q ss_pred             CCCCCCCccCcc-hhhHHHHHHhcC--CCCCC
Q 017817          333 GLYPHQLVSAFD-GQTSSLYYNDSD--TQDTN  361 (365)
Q Consensus       333 g~~~~~l~~~f~-~~~~~ly~~~~~--~~~~~  361 (365)
                      |+..+.||+.|| +++|.+|+.+.+  .|++|
T Consensus         1 Pi~f~LLpe~FTL~eLq~vyE~ilg~~ldk~N   32 (76)
T d2fb1a1           1 PIGFNLLPKLFTLSQLQSLYEAIYGEPMDKRN   32 (76)
T ss_dssp             GGGGGGSCSEEEHHHHHHHHHHHHTSCCCHHH
T ss_pred             CchhhhCCccccHHHHHHHHHHHhCCCCCHHH
Confidence            466788999999 999999999998  44443