Citrus Sinensis ID: 017819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccEHHHHHHccccEEEEEHHHHHHHHHHccHHccccccHHHccccEEEcccccccccHHHHHHccccccccccHHHHccHcccccccccccccccccccccccccccccHccccccccccccHHHHHEEEccccEEEEEEccccccccEcccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHEEEEHHHHHHHHHcccccccEEEEcccccEcHcccccHHHcccccccccccc
Coil and Loop (DISEMBL)
mmkeesndgsgggnswARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAeihsanplarrhqrvpilpisgsvyggrtgatpeghheddqdEEEAASWLLlsnpgkncgngnngnnngflfggevdEYLDLVdytggnqyldqysngnnnqqqhgvaqkgyvgdsvvpvqcelankdhhrHQQNFqlgldydsskagysyngsishsvsvsstdlgvvpestmsdisishsrppkgtidlfsgppiqmppqltpmdREARVLRYREKKKTRKFEKTIRYASRKAYaetrprikgrfakrtdaeVEVDQMFSATlmtdpgygivpsf
Flexible Loop (DISEMBL)
mmkeesndgsgggnswARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAEIHSAnplarrhqrvpiLPISGSVYGGRTGATPEGHHEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMsdisishsrppKGTIDLFSGPpiqmppqltpmdreARVLRyrekkktrkfektiryasrkayaetrprikgrfakrtdaeveVDQMFsatlmtdpgygivpsf
Low Complexity Region (SEG)
MMKEEsndgsgggnsWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFlckadaaslcaacdaEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHeddqdeeeAASWLLLSnpgkncgngnngnnngflfggEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNGsishsvsvssTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYrekkktrkfektIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF
Disordered region (IsUnstruct)
**************SWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVY***********************WLLLS*****CGNGNNGNNNGFLFGGEVDEYLDLVDYTGGNQYLDQYS*********GVAQKGYVGDSVVPVQCELANKD******NFQLGLDY**********************************************************************************************************************F*ATL************
Disordered Region (DISOPRED)
******************VCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREAR***********KFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMF*ATLMTDPGYGIVPSF
Disordered Region (DISEMBL)
**************SWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGA***************ASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF
Disordered Region (DISPRO)
****************ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGATP***********************************GFLFGGEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNGS**********DL****************************************D*EARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q96502	347	Zinc finger protein CONST	yes	no	0.936	0.985	0.621	1e-120
Q39057	373	Zinc finger protein CONST	no	no	0.961	0.941	0.555	1e-105
O50055	355	Zinc finger protein CONST	no	no	0.934	0.960	0.585	1e-103
Q9FDX8	395	Zinc finger protein HD1 O	yes	no	0.928	0.858	0.471	3e-71
Q9SK53	294	Zinc finger protein CONST	no	no	0.742	0.921	0.429	9e-63
Q940T9	362	Zinc finger protein CONST	no	no	0.917	0.925	0.430	7e-61
Q9FHH8	355	Zinc finger protein CONST	no	no	0.865	0.890	0.421	2e-58
Q9LJ44	364	Zinc finger protein CONST	no	no	0.849	0.851	0.280	1e-20
Q9SYM2	299	Probable salt tolerance-l	no	no	0.326	0.397	0.351	7e-16
O82256	332	Zinc finger protein CONST	no	no	0.263	0.289	0.397	1e-15

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/370 (62%), Positives = 270/370 (72%), Gaps = 28/370 (7%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+KEESN+      +WAR CDTCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV
Sbjct: 1   MLKEESNES----GTWARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERV 56

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
            VC+SCE APAAFLCKADAASLC ACDAEIHSANPLARRHQRVPILP+S +     + A 
Sbjct: 57  RVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSAN--SCSSMAP 114

Query: 121 PEGHHEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLVDYTGG--NQ 178
            E   ++D+D+ E ASW LL NPGKN GN     NNGFLFG    EYLDLVDY+    NQ
Sbjct: 115 SETDADNDEDDREVASW-LLPNPGKNIGN----QNNGFLFGV---EYLDLVDYSSSMDNQ 166

Query: 179 YLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYS 238
           + D       NQ  H   Q+ + GD VVP+Q E +     + QQNFQLG++Y  S   + 
Sbjct: 167 FED-------NQYTH--YQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHY 217

Query: 239 YNGS---ISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMD 295
            N S   ++HS SVSS D+ VVPEST SDI++ H R  K TID  SGPP Q+  QLTPM+
Sbjct: 218 NNNSLKDLNHSASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPME 277

Query: 296 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMT 355
           REARVLRYREKKKTRKF+KTIRYASRKAYAE RPRIKGRFAKR + E E +++FS +LM+
Sbjct: 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMS 337

Query: 356 DPGYGIVPSF 365
           + GYGIVPSF
Sbjct: 338 ETGYGIVPSF 347

Putative transcription factor. Does not affect flowering time.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/387 (55%), Positives = 255/387 (65%), Gaps = 36/387 (9%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+K+ESND   G N+ AR CDTCR+ ACTVYC AD AYLC +CD++VH ANRVA RH+RV
Sbjct: 1   MLKQESNDIGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRV 60

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGG----- 115
            VCESCE+APAAFLC+AD ASLC ACD+E+HSANPLARRHQRVPILPISG+ +       
Sbjct: 61  RVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTH 120

Query: 116 ----RTGATPEGH--------HEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGE 163
               +T   PE           E D+D +E ASWL       N    NN  NNG LF   
Sbjct: 121 HQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLF-----PNSDKNNNNQNNGLLFS-- 173

Query: 164 VDEYLDLVDYTGGNQY--LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQ 221
            DEYL+LVDY     Y    +YS    +QQ   V Q  Y GD VVP++ E +      +Q
Sbjct: 174 -DEYLNLVDYNSSMDYKFTGEYS---QHQQNCSVPQTSYGGDRVVPLKLEESRGHQCHNQ 229

Query: 222 QNFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFS 281
           QNFQ  + Y SS   Y+ NGSI+H+  +SS + GVVPEST    + SH R PKGT++   
Sbjct: 230 QNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQP 289

Query: 282 GPPIQM--PPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 339
            P  QM    QL+PMDREARVLRYREK+KTRKFEKTIRYASRKAYAE RPR+ GRFAKR 
Sbjct: 290 DPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR- 348

Query: 340 DAEVEV-DQMFSATLMTDPGYGIVPSF 365
             E+E  +Q F+  LM + GYGIVPSF
Sbjct: 349 --EIEAEEQGFNTMLMYNTGYGIVPSF 373

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/379 (58%), Positives = 260/379 (68%), Gaps = 38/379 (10%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+K ESN        WA+ CDTCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV
Sbjct: 1   MLKVESN--------WAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERV 52

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGG----- 115
            VC+SCE+APAAF CKADAASLC  CD+EIHSANPLARRHQRVPILPIS   Y       
Sbjct: 53  RVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNH 112

Query: 116 ---RTGATPE-----GHHEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEY 167
               T   PE     G  E+D+DE EAASWLL +         N+GNNNGF  G   DE+
Sbjct: 113 SCETTVTDPENRLVLGQEEEDEDEAEAASWLLPN------SGKNSGNNNGFSIG---DEF 163

Query: 168 LDLVDYTGGN-QYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQL 226
           L+LVDY+  + Q+ DQ    N  Q    V Q+ Y  D VVP+Q E++ K  ++ QQNFQL
Sbjct: 164 LNLVDYSSSDKQFTDQ---SNQYQLDCNVPQRSYGEDGVVPLQIEVS-KGMYQEQQNFQL 219

Query: 227 GLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQ 286
            ++  S  A  S NGS+SH V+VSS DLGVVPEST SD ++S+ R PK   D    PP Q
Sbjct: 220 SINCGSWGALRSSNGSLSHMVNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQPPYPPAQ 279

Query: 287 MPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVD 346
           M   L+P DREARVLRYREKKK RKFEKTIRYASRKAYAE RPRIKGRFAK+ D + E +
Sbjct: 280 M---LSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEAN 336

Query: 347 QMFSATLMTDPGYGIVPSF 365
           Q FS  +  D GYGIVPSF
Sbjct: 337 QAFSTMITFDTGYGIVPSF 355

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1

 Score =  269 bits (687), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 180/382 (47%), Positives = 224/382 (58%), Gaps = 43/382 (11%)

Query: 13  GNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAA 72
           G  WAR CD CRAA   VYC+AD AYLC++CD+RVH ANRVA RHERV VCE+CE+APAA
Sbjct: 28  GCPWARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAA 87

Query: 73  FLCKADAASLCAACDAEIHSANPLARRHQRVPILPI-SGSVYGGRTGATPEGHHEDDQDE 131
             C+ADAA+LC ACD ++HSANPL       P + I + SV      AT     + D   
Sbjct: 88  LACRADAAALCVACDVQVHSANPL-------PAITIPATSVLAEAVVATATVLGDKD--- 137

Query: 132 EEAASWLLLSNPGKNCGNGNNGNNNGF------------LFGGEVDEYLDLVDYTGGNQY 179
           EE  SWLLLS    N  N NN N+N              ++ GEVDEY DLV Y   N Y
Sbjct: 138 EEVDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYFDLVGY---NSY 194

Query: 180 LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSY 239
            D     NN  +Q+G+ ++         +Q E A K+        Q+ +  +   +GY  
Sbjct: 195 YDNRIE-NNQDRQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVPSQITMLSEQQHSGYGV 253

Query: 240 NG-----SISHSVSVSS-----------TDLGVVPESTMSDISISHSRPPKGTIDLFSGP 283
            G     S++  VS  +            + G+VP+ST+ D+  S    P G I+LFSGP
Sbjct: 254 VGADQAASMTAGVSAYTDSISNSISFSSMEAGIVPDSTVIDMPNSRILTPAGAINLFSGP 313

Query: 284 PIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEV 343
            +QM    + MDREARVLRYREKKK RKFEKTIRY +RKAYAE RPRIKGRFAKR+D ++
Sbjct: 314 SLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQI 373

Query: 344 EVDQMFSATLMTDPGYGIVPSF 365
           EVDQMFS   ++D  YG VP F
Sbjct: 374 EVDQMFSTAALSDGSYGTVPWF 395

Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score =  241 bits (614), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 141/328 (42%), Positives = 190/328 (57%), Gaps = 57/328 (17%)

Query: 15  SWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFL 74
           S +R+CD+C++ A T++C+AD A+LC  CD ++H AN++A RHERV++CE CEQAPA   
Sbjct: 3   SSSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVT 62

Query: 75  CKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHEDDQDEEEA 134
           CKADAA+LC  CD +IHSANPL+RRH+RVPI P   +V G    A+   +  D+   +  
Sbjct: 63  CKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVT 121

Query: 135 ASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHG 194
           ASWLL                     G E+      +DY       ++ S+GN       
Sbjct: 122 ASWLLAKE------------------GIEITNLFSDLDYPKIEVTSEENSSGN------- 156

Query: 195 VAQKGYVGDSVVPVQCEL-ANKDHHRHQQNFQLGLDYDSSKAGYSYNGSISHSVSVSSTD 253
                   D VVPVQ +L  N+D+     NF L      S+ G+++   I+ +VS  + D
Sbjct: 157 --------DGVVPVQNKLFLNEDYF----NFDLSAS-KISQQGFNF---INQTVSTRTID 200

Query: 254 LGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYREKKKTRKFE 313
           + +VPES      ++++  P                QL+P +REARVLRYREK+K RKFE
Sbjct: 201 VPLVPESGGVTAEMTNTETPAV--------------QLSPAEREARVLRYREKRKNRKFE 246

Query: 314 KTIRYASRKAYAETRPRIKGRFAKRTDA 341
           KTIRYASRKAYAE RPRIKGRFAKRTD+
Sbjct: 247 KTIRYASRKAYAEMRPRIKGRFAKRTDS 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score =  234 bits (597), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 161/374 (43%), Positives = 218/374 (58%), Gaps = 39/374 (10%)

Query: 17  ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCK 76
           +++CD+C++A   +YC+ D A+LC +CDS+VH AN++A RH RV++CE CEQAPA   CK
Sbjct: 3   SKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCK 62

Query: 77  ADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYG-GRTGATP------------EG 123
           ADAA+LC  CD +IHSANPLARRH+RVP+ P   SV   G    T             +G
Sbjct: 63  ADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDG 122

Query: 124 HHEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYL-DLVDYTGGNQYL-- 180
           +   +++EEEAASWLLL NP             G +     +E   D  +   G QYL  
Sbjct: 123 NGSREEEEEEAASWLLLPNP-----KTTTTATAGIVAVTSAEEVPGDSPEMNTGQQYLFS 177

Query: 181 --DQYSN---GNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKA 235
             D Y +   GN + +   + Q     D VVPV+     +    ++  F+  +D+     
Sbjct: 178 DPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTV-RIPTVNENCFE--MDFTGGSK 234

Query: 236 GYSYNGS---ISHSVSVSSTDLGVVPE-STMSDISISHSRPPKGTIDLFSGPPIQMPPQL 291
           G++Y G    ISHSVS SS ++GVVP+  +++D+S  +  P     D    P  Q    L
Sbjct: 235 GFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGAD----PGTQRAVPL 290

Query: 292 TPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSA 351
           T  +REARV+RYREK+K RKFEKTIRYASRKAYAE RPRIKGRFAKRTD     D +   
Sbjct: 291 TSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHG 350

Query: 352 TLMTDPGYGIVPSF 365
            + +  G+G+VP+F
Sbjct: 351 GIFS--GFGLVPTF 362

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2

 Score =  226 bits (577), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/384 (42%), Positives = 213/384 (55%), Gaps = 68/384 (17%)

Query: 10  SGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQA 69
           SGG  + AR CD C++    V+C+ D A+LC ACD+R+H   R    HERV+VCE CEQA
Sbjct: 12  SGGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFTR----HERVWVCEVCEQA 67

Query: 70  PAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI-----------LPISGSVYGGRTG 118
           PAA  CKADAA+LC +CDA+IHSANPLA RH+RVP+             IS S   G  G
Sbjct: 68  PAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILG 127

Query: 119 ATPEGHHEDD---QDEEEAASWLL---LSNPGK-NCGNGNNGNNNGFLFGGEVDEYLDLV 171
           ++            D+     WLL    + P K   G  N   ++ F+F     ++  L+
Sbjct: 128 SSTTVDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFS----DFDRLI 183

Query: 172 DYTGGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCE-----LANKDHHRHQQNFQL 226
           D+   N +       N++Q   G       GDS+VPVQ +     L N DH         
Sbjct: 184 DFEFPNSF-------NHHQNNAG-------GDSLVPVQTKTEPLPLTNNDH-------CF 222

Query: 227 GLDYDSSK-AGYSY-NGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPP 284
            +D+  SK + ++Y + S+SHSVS SS + GVVP+   ++ S++ S     T        
Sbjct: 223 DIDFCRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNN-SVNRSTITSSTT------- 274

Query: 285 IQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVE 344
                Q + MDREARVLRYREK+K RKFEKTIRYASRKAYAE+RPRIKGRFAKRT  E E
Sbjct: 275 -GGDHQASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT--ETE 331

Query: 345 VDQMFSATLMTDPG---YGIVPSF 365
            D +F + +        YG+VP+F
Sbjct: 332 NDDIFLSHVYASAAHAQYGVVPTF 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 148/360 (41%), Gaps = 50/360 (13%)

Query: 20  CDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFLCKADA 79
           CD C  +   +YCK+D+A LC  CD  VH AN ++ RH R  +CE C   PAA  C  + 
Sbjct: 5   CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64

Query: 80  ASLCAACDAE----------IHSANPLA---------RRHQRVPILPISGSVYGGRTGAT 120
            S C  C             + S NP +         R    +   P+SG +     G+ 
Sbjct: 65  VSYCQGCHWHESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG-LLSPFVGSF 123

Query: 121 PEGHHEDDQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLV--------D 172
           P     D  +     ++ ++ +   N     N ++N   F  E   Y D+V        D
Sbjct: 124 PLN---DLNNTMFDTAYSMVPH---NISYTQNFSDNLSFFSTESKGYPDMVLKLEEGEED 177

Query: 173 YTGGNQYLDQYSNGNNNQQQHGVAQKGYV-GDSVVPVQCELANKDHHRH--QQNFQLGLD 229
              G    D   N +      G + + ++  D  VP  C L +K +       NF +   
Sbjct: 178 LCEGLNLDDAPLNFDVGDDIIGCSSEVHIEPDHTVP-NCLLIDKTNTSSFTGSNFTVDKA 236

Query: 230 YDSSKAGYSYNGSISHSVSVSST-------DLGVVPESTMSDISISHSRPPKGTIDLFSG 282
            ++S  G   N +    + +S          L +  E+  +D       P  G I   S 
Sbjct: 237 LEASPPGQQMNINTGLQLPLSPVLFGQIHPSLNITGENNAADYQDCGMSP--GFI--MSE 292

Query: 283 PPIQMPPQLT-PMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDA 341
            P +   +++ P  R    LRY+EKK  R F K IRYASRKA A+TR R+KGRF K  D+
Sbjct: 293 APWETNFEVSCPQARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDS 352

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 9/128 (7%)

Query: 20  CDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFV---------CESCEQAP 70
           C+ C AA  TV C AD A LC ACD ++H AN++A +H+RV +         C+ C++A 
Sbjct: 5   CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEAS 64

Query: 71  AAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHEDDQD 130
             F C  D A LC  CD  IH+ NP    HQR  +  I   +    TG + +    +D  
Sbjct: 65  GFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPTNDDK 124

Query: 131 EEEAASWL 138
             E   ++
Sbjct: 125 TMETKPFV 132

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 2/98 (2%)

Query: 13  GNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAA 72
           G+   R+CD C ++   VYCKAD A LC ACD +VHVAN++  +H R  +C+SC ++P++
Sbjct: 6   GHQRDRLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSS 65

Query: 73  FLCKADAASLCAACDAEIHSANPLARRHQRVPILPISG 110
             C+ + + LC  CD + H+A+  +  H R P    +G
Sbjct: 66  LFCETERSVLCQNCDWQHHTAS--SSLHSRRPFEGFTG 101

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
255584300	378	zinc finger protein, putative [Ricinus c	0.975	0.941	0.700	1e-140
41323976	422	CONSTANS-like protein CO1 [Populus delto	0.969	0.838	0.686	1e-137
41323978	372	CONSTANS-like protein CO2 [Populus delto	0.967	0.948	0.677	1e-133
210063639	384	CONSTANS [Fragaria x ananassa]	0.989	0.940	0.672	1e-132
224127556	355	predicted protein [Populus trichocarpa]	0.926	0.952	0.685	1e-131
224077570	369	predicted protein [Populus trichocarpa]	0.967	0.956	0.690	1e-131
186911828	367	COL1 [Beta vulgaris subsp. vulgaris]	0.967	0.961	0.680	1e-130
387862485	381	CONSTANTS-like protein [Fragaria x anana	0.991	0.950	0.671	1e-129
302398765	393	COL domain class transcription factor [M	0.997	0.926	0.667	1e-128
387862487	382	CO-like protein [Fragaria x ananassa]	0.989	0.945	0.655	1e-128

>gi|255584300|ref|XP_002532886.1| zinc finger protein, putative [Ricinus communis] gi|223527346|gb|EEF29491.1| zinc finger protein, putative [Ricinus communis]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/387 (70%), Positives = 302/387 (78%), Gaps = 31/387 (8%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+KEE N G GGGN+WARVCDTCRAAACTVYCKAD AYLC+ CD+R+H ANRVA RH RV
Sbjct: 1   MLKEE-NTGGGGGNNWARVCDTCRAAACTVYCKADSAYLCATCDARIHAANRVASRHGRV 59

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
           +VCE+CE+APAAFLCKADAASLCA CDA+IHSANPLARRHQRVPI PISG ++G + G  
Sbjct: 60  WVCEACERAPAAFLCKADAASLCATCDADIHSANPLARRHQRVPIHPISGCLHGPQAGPV 119

Query: 121 PEGHHEDDQD---------------EEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVD 165
             G     +D               E+EAASWLLL NP KN GN  N   NGFLFGGEV+
Sbjct: 120 GGGGETTTEDMFMTEDGEDGVGEEEEDEAASWLLL-NPVKN-GNSQNNGTNGFLFGGEVE 177

Query: 166 EYLDLVDYT----GGNQYLDQYSNGNNNQQQHG-VAQKGYVGDSVVPVQC-ELANKDH-H 218
           EYLDL +Y     G NQY D      N+Q   G V QK + GDSVVPV+C + A KDH H
Sbjct: 178 EYLDLFEYNSNSCGENQYAD------NHQHYSGTVHQKSHEGDSVVPVRCGDGAGKDHVH 231

Query: 219 RHQQNFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTID 278
           +   NFQLGL+++SSKA YSYNGSISHSVS+S  D+GVVP+STMS+ SISH RPPKGTID
Sbjct: 232 QQYHNFQLGLEFESSKAAYSYNGSISHSVSISPMDVGVVPDSTMSEASISHPRPPKGTID 291

Query: 279 LFSGPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKR 338
           LFSGPPIQMP QL+P DREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKR
Sbjct: 292 LFSGPPIQMPSQLSPRDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKR 351

Query: 339 TDAEVEVDQMFSATLMTDPGYGIVPSF 365
           TD EVEVDQ+FS  LM + GYGIVPSF
Sbjct: 352 TDVEVEVDQIFSTALMAETGYGIVPSF 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41323976|gb|AAS00054.1| CONSTANS-like protein CO1 [Populus deltoides]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/383 (68%), Positives = 295/383 (77%), Gaps = 29/383 (7%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+KEES    G  N+WARVCDTCRAAACTVYC+AD AYLC+ CD+RVH ANRVA RHERV
Sbjct: 51  MLKEESGGSGGVVNNWARVCDTCRAAACTVYCRADSAYLCAGCDARVHAANRVASRHERV 110

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
            VCE+CE+APAA LCKADAASLC ACDA+IHSANPLARRHQRVPILPISG +YG + G  
Sbjct: 111 RVCEACERAPAALLCKADAASLCTACDADIHSANPLARRHQRVPILPISGYLYGTQVGPA 170

Query: 121 PEGHHED------------DQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYL 168
             G  ED            ++DE+EAASWLLL NP KN    NN NNNGFLFGGEVDEYL
Sbjct: 171 A-GETEDQFMTQEGEETIGEEDEDEAASWLLL-NPAKN---SNNQNNNGFLFGGEVDEYL 225

Query: 169 DLVDYT--GGNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQ----Q 222
           D+V+Y     NQY DQY     NQQ + V  K   GDSVVP+Q     KDH + Q     
Sbjct: 226 DIVEYNSCAENQYSDQY-----NQQHYSVPPKSCGGDSVVPIQYG-EGKDHQQQQQQQYH 279

Query: 223 NFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSG 282
           NFQLGL+Y+ +KA YSY+GS+S  VS+SS D+GVVPES MS+ISISH    +GTIDLFS 
Sbjct: 280 NFQLGLEYEPAKAAYSYDGSVSQGVSMSSMDVGVVPESAMSEISISHQSASRGTIDLFSS 339

Query: 283 PPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAE 342
           PPIQMP QL+PM+REARVLRYREKKK RKFEKTIRYASRKAYAETRPRIKGRFAKRTD +
Sbjct: 340 PPIQMPSQLSPMEREARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRTDVD 399

Query: 343 VEVDQMFSATLMTDPGYGIVPSF 365
           VEVDQMFS+TLM +  YGIVPSF
Sbjct: 400 VEVDQMFSSTLMAETAYGIVPSF 422

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41323978|gb|AAS00055.1| CONSTANS-like protein CO2 [Populus deltoides]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/384 (67%), Positives = 294/384 (76%), Gaps = 31/384 (8%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+K+ES+ GSGGG++ AR+CDTCRAAACTVYC+AD AYLC+ CD+RVH ANRVA RHERV
Sbjct: 1   MLKQESS-GSGGGDNRARLCDTCRAAACTVYCRADSAYLCAGCDARVHAANRVASRHERV 59

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
           +VCESCE+APAA LCKADAASLC ACDA+IHSANPLARRHQRVPILPISG ++G + G  
Sbjct: 60  WVCESCERAPAALLCKADAASLCTACDADIHSANPLARRHQRVPILPISGCLHGSQVGPA 119

Query: 121 PEGHHED---------------DQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVD 165
             G  ED               +++E+EAASWLLL NP KN     N NNNGFLF GEVD
Sbjct: 120 A-GETEDRFTTQEGEETISEEEEEEEDEAASWLLL-NPVKN---SKNQNNNGFLFEGEVD 174

Query: 166 EYLDLVDYTG--GNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQ- 222
           EYLDLV+Y     NQ  DQY     NQQ + V  K Y GD VVP+Q     KDH + +Q 
Sbjct: 175 EYLDLVEYNSCTENQCSDQY-----NQQHYCVPPKSYGGDRVVPIQ-YGEGKDHQQQRQY 228

Query: 223 -NFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFS 281
            NFQLGL+Y+ SKA YSYNG IS SVS+SS D+GVVPESTMS+ISIS  R PK TI+LFS
Sbjct: 229 HNFQLGLEYEPSKAAYSYNGLISQSVSMSSMDVGVVPESTMSEISISQHRTPKRTIELFS 288

Query: 282 GPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDA 341
              IQMP QL+PMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPR+KGRFAKR D 
Sbjct: 289 STAIQMPSQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRVKGRFAKRKDV 348

Query: 342 EVEVDQMFSATLMTDPGYGIVPSF 365
           EVE D+ FS+TLM   G GIVPSF
Sbjct: 349 EVEDDRTFSSTLMAGTGCGIVPSF 372

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|210063639|gb|ACJ06578.1| CONSTANS [Fragaria x ananassa]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/388 (67%), Positives = 296/388 (76%), Gaps = 27/388 (6%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+KEESN G+   NSWARVCDTCR+A CTVYC+AD AYLCS CD+ +H ANRVA RHERV
Sbjct: 1   MLKEESN-GAAAANSWARVCDTCRSAPCTVYCRADSAYLCSGCDATIHAANRVASRHERV 59

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
            VCE+CE+APAAFLCKADAASLC ACDA+IHSANPLARRHQRVPILPISG       G+T
Sbjct: 60  SVCEACERAPAAFLCKADAASLCTACDADIHSANPLARRHQRVPILPISGCQI--MVGST 117

Query: 121 PEGHHED-------------DQDEEEAASWLLLSNPGKNCGNGNNGNNN------GFLFG 161
           P    ED             ++DE+EAASWLLL NP KN  N N+ NNN      GFLFG
Sbjct: 118 PADTTEDGFLSQEGDEEVMDEEDEDEAASWLLL-NPVKNSNNHNSNNNNPNNNNNGFLFG 176

Query: 162 GEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQK-GYVGDSVVPVQCELANKDHHRH 220
            EVDEYLDLV+Y   +Q     +   N+Q  +GV  K  Y GDSVVPVQ         + 
Sbjct: 177 VEVDEYLDLVEYNSSDQNQFSGTTATNDQHNYGVPHKISYGGDSVVPVQYGEGKVTQMQM 236

Query: 221 QQ--NF-QLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTI 277
           QQ  NF QLG++Y+SSKA Y Y+GSISH+VSVSS D+GVVP+STMS++S+ H R PKGTI
Sbjct: 237 QQKHNFHQLGMEYESSKAAYGYDGSISHTVSVSSMDVGVVPDSTMSEMSVCHPRTPKGTI 296

Query: 278 DLFSGPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAK 337
           DLF+GP IQMP QL+PMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAK
Sbjct: 297 DLFNGPTIQMPTQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAK 356

Query: 338 RTDAEVEVDQMFSATLMTDPGYGIVPSF 365
           RTD EVEVDQMFS +LM + GYGIVPS+
Sbjct: 357 RTDIEVEVDQMFSTSLMGETGYGIVPSY 384

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127556|ref|XP_002329307.1| predicted protein [Populus trichocarpa] gi|222870761|gb|EEF07892.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/369 (68%), Positives = 285/369 (77%), Gaps = 31/369 (8%)

Query: 14  NSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAF 73
           N+WARVCDTCRAAACTVYC+AD AYLC+ CD+RVH ANRVA RHERV VCE+CE+APAA 
Sbjct: 1   NNWARVCDTCRAAACTVYCRADSAYLCAGCDARVHAANRVASRHERVRVCEACERAPAAL 60

Query: 74  LCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHED------ 127
           LCKADAASLC ACDA+IHSANPLARRHQRVPILPISG +YG + G    G  ED      
Sbjct: 61  LCKADAASLCTACDADIHSANPLARRHQRVPILPISGYLYGTQVGPAA-GETEDQFMTQE 119

Query: 128 ------DQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYLDLVDYT--GGNQY 179
                 ++DE+EAASWLLL NP KN    NN NNNGFLFGGEVDEYLD+V+Y     NQY
Sbjct: 120 GEETIGEEDEDEAASWLLL-NPAKN---SNNQNNNGFLFGGEVDEYLDIVEYNSCAENQY 175

Query: 180 LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQC---ELANKDHHRHQQNFQLGLDYDSSKAG 236
            DQY     NQQ + V  K   GDSVVP+Q    +   +   +   NFQLGL+Y+ +KA 
Sbjct: 176 SDQY-----NQQHYSVPPKSCGGDSVVPIQYGEGKDHQQQQQQQHHNFQLGLEYEPAKAA 230

Query: 237 YSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDR 296
           YSY+GS    VS+SS D+GVVPES MS+ISISH   P+GTIDLFS PPIQMP QL+PM+R
Sbjct: 231 YSYDGS----VSMSSMDVGVVPESAMSEISISHQSAPRGTIDLFSSPPIQMPSQLSPMER 286

Query: 297 EARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTD 356
           EARVLRYREKKK RKFEKTIRYASRKAYAETRPRIKGRFAKRTD +VEVDQMFS+TLM +
Sbjct: 287 EARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDVEVDQMFSSTLMAE 346

Query: 357 PGYGIVPSF 365
             YGIVPSF
Sbjct: 347 TAYGIVPSF 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077570|ref|XP_002305307.1| predicted protein [Populus trichocarpa] gi|222848271|gb|EEE85818.1| predicted protein [Populus trichocarpa]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/381 (69%), Positives = 295/381 (77%), Gaps = 28/381 (7%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+K+ES+ G GGG++ ARVCDTCRAA CTVYC+AD AYLC+ CD+RVH ANRVA RHERV
Sbjct: 1   MLKQESS-GGGGGDNRARVCDTCRAAPCTVYCRADSAYLCAGCDARVHAANRVASRHERV 59

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
            VCE+CE+APAA LCKADAASLC ACDA+IHSANPLARRHQRVPILPISG ++G   G  
Sbjct: 60  SVCEACERAPAALLCKADAASLCTACDADIHSANPLARRHQRVPILPISGCLHGSPVGPA 119

Query: 121 PEGHHED------------DQDEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGGEVDEYL 168
             G  ED            +++E+EAASWLLL NP KN     N NNNGFLFGGEVDEYL
Sbjct: 120 -AGETEDRFTTQEGEETISEEEEDEAASWLLL-NPVKN---SKNQNNNGFLFGGEVDEYL 174

Query: 169 DLVDYTG--GNQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQ--NF 224
           DLV+Y     NQ  DQY     NQQ + V  K Y GD  VP+Q     KDH + +Q  NF
Sbjct: 175 DLVEYNSCTENQCSDQY-----NQQHYCVPPKSYGGDRAVPIQ-YGEGKDHQQQRQYHNF 228

Query: 225 QLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPP 284
           QLGL+Y+ SKA  SYNGSIS SVS+SS D+GVVPESTMS+ISIS  RPPKGT++LFS   
Sbjct: 229 QLGLEYEPSKAACSYNGSISQSVSMSSMDVGVVPESTMSEISISQHRPPKGTMELFSSTA 288

Query: 285 IQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVE 344
           IQMP QL+PMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKR D EVE
Sbjct: 289 IQMPSQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRKDVEVE 348

Query: 345 VDQMFSATLMTDPGYGIVPSF 365
            DQMFS+TLM + GYGIVPSF
Sbjct: 349 DDQMFSSTLMAETGYGIVPSF 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186911828|gb|ACC95129.1| COL1 [Beta vulgaris subsp. vulgaris]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/379 (68%), Positives = 297/379 (78%), Gaps = 26/379 (6%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           MMKEE +      NSWARVCDTCRAA CTVYC+AD A+LC++CD+R+H AN+VA RHERV
Sbjct: 1   MMKEEVS--GSDTNSWARVCDTCRAAPCTVYCRADSAFLCTSCDARIHAANQVASRHERV 58

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTG-- 118
           +VCE+CE+APAAFLCKADAASLCA CDAEIHSANPLARRHQRVPI+P++G VYG + G  
Sbjct: 59  WVCEACERAPAAFLCKADAASLCATCDAEIHSANPLARRHQRVPIMPVAGCVYGPQGGRM 118

Query: 119 ------ATPEG--HHEDDQ-DEEEAASWLLLSNPGKNCGNGNNGNNNGFLFGG-EVDEYL 168
                   PEG  H  D + DE+EAASWLLL NP KN    NN N NGFL GG EVDEYL
Sbjct: 119 SEDRFLTLPEGDDHTTDHEGDEDEAASWLLL-NPVKN---SNNQNTNGFLTGGGEVDEYL 174

Query: 169 DLVDYTGG--NQYLDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQL 226
           DL++Y  G  NQ  +QY    N QQ+  V +K   GDSVVPVQC  A KDH    QNF  
Sbjct: 175 DLLEYNSGADNQLCEQY----NQQQEFKVPEKNCGGDSVVPVQCREA-KDHQIQYQNFLF 229

Query: 227 GLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQ 286
           G++ ++ K+GY+YN SIS SVSVSS D+GVVPES MSDIS+SH RPPKGTIDLFS PP+Q
Sbjct: 230 GMECET-KSGYTYNTSISQSVSVSSMDVGVVPESAMSDISMSHPRPPKGTIDLFSSPPMQ 288

Query: 287 MPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAEVEVD 346
           +P QL+P+DREARV+RYREKKK RKFEKTIRYASRKAYAETRPRIKGRFAKRTD E E+D
Sbjct: 289 VPTQLSPLDREARVMRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEMD 348

Query: 347 QMFSATLMTDPGYGIVPSF 365
           QMF+ +LM D GYGIVPS+
Sbjct: 349 QMFTNSLMADSGYGIVPSY 367

Source: Beta vulgaris subsp. vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387862485|gb|AFK08985.1| CONSTANTS-like protein [Fragaria x ananassa]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/384 (67%), Positives = 293/384 (76%), Gaps = 22/384 (5%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+KEESN  +   NSWARVCDTC +A CTVYC+AD AYLCS CD+ +H ANRVA RHERV
Sbjct: 1   MLKEESNGAAAAANSWARVCDTCCSAPCTVYCRADSAYLCSGCDTTIHAANRVASRHERV 60

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
           +VCE+CE+APAAFLCKADAASLC ACDA+IHSANPLARRHQRVPILPISGS      G+ 
Sbjct: 61  WVCEACERAPAAFLCKADAASLCTACDADIHSANPLARRHQRVPILPISGSQI--MVGSA 118

Query: 121 PEGHHED-------------DQDEEEAASWLLLSNPGKNCGNGNNGNNN--GFLFGGEVD 165
           P    ED             ++DE+EAASWLLL NP KN  N NN NNN  GF FG EVD
Sbjct: 119 PADTTEDGFLSQEGDEEAMDEEDEDEAASWLLL-NPVKNSNNHNNPNNNNNGFFFGVEVD 177

Query: 166 EYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQK-GYVGDSVVPVQCELANKDHHRHQQ-- 222
           EYLD V+Y   +Q     +   N+Q  +GV  K  Y GDSVVPVQ         + QQ  
Sbjct: 178 EYLDFVEYNSSDQNQLGGTTATNDQHNYGVPHKISYGGDSVVPVQYGEGKVTQMQMQQKH 237

Query: 223 NF-QLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDLFS 281
           NF QLG++Y+SSKA Y Y+GSISH+VSVSS D+GVVP+STMS++S+ H R PKGTIDLF+
Sbjct: 238 NFHQLGMEYESSKAAYGYDGSISHTVSVSSMDVGVVPDSTMSEMSVCHPRTPKGTIDLFN 297

Query: 282 GPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDA 341
           GP IQMP QL+PMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTD 
Sbjct: 298 GPTIQMPTQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDI 357

Query: 342 EVEVDQMFSATLMTDPGYGIVPSF 365
           EVEVDQMFS +LM + GYGIVPS+
Sbjct: 358 EVEVDQMFSTSLMRETGYGIVPSY 381

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398765|gb|ADL36677.1| COL domain class transcription factor [Malus x domestica]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 263/394 (66%), Positives = 300/394 (76%), Gaps = 30/394 (7%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+KE+ ++G+   N+WARVCDTCRAAACTVYC+AD AYLCS CD+ +H ANRVA RHERV
Sbjct: 1   MLKEDQSNGTATANNWARVCDTCRAAACTVYCRADSAYLCSGCDATIHAANRVASRHERV 60

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYG------ 114
           +VCE+CE+APAAFLCKADAASLC ACDA+IHSANPLARRHQRVPILPISG +Y       
Sbjct: 61  WVCEACERAPAAFLCKADAASLCTACDADIHSANPLARRHQRVPILPISGCLYSSQATEQ 120

Query: 115 GRTG-ATPEGHHEDD-------------QDEEEAASWLLLSNPGKNCGNGNNGNNN--GF 158
           G  G A   G   +D             +DE+EAASWLLL NP KN  N NN N    GF
Sbjct: 121 GEMGVAVSAGAETEDGFLSQEGDDTIYEEDEDEAASWLLL-NPVKNNNNNNNTNTQNNGF 179

Query: 159 LFGGEVDEYLDLVDYTGGNQYLDQYSNGNNNQQQ-----HGVAQKGYVGDSVVPV-QCEL 212
            FG EVDEYLDLV+Y       +Q+++ +    Q     +GV  K Y GDSVVP+ Q   
Sbjct: 180 FFGAEVDEYLDLVEYNTCADQNNQFTDHHQQHDQQQQQQYGVPYKNYGGDSVVPIHQHGE 239

Query: 213 ANKDHHRHQQNF-QLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSR 271
             K H   +Q+F QLGL+Y+SSKA YSYNGS+SHSVSVSS D+GVVP+STMSDISISH R
Sbjct: 240 VGKAHQLQKQSFHQLGLEYESSKAAYSYNGSLSHSVSVSSMDVGVVPDSTMSDISISHPR 299

Query: 272 PPKGTIDLFSGPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRI 331
            PKGTIDLFSGP IQMP QL+PMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRI
Sbjct: 300 TPKGTIDLFSGPTIQMPTQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRI 359

Query: 332 KGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF 365
           KGRFAKRT+ EVEVDQMF+ +LM + GYGIVPSF
Sbjct: 360 KGRFAKRTEMEVEVDQMFATSLMAENGYGIVPSF 393

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387862487|gb|AFK08986.1| CO-like protein [Fragaria x ananassa]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/386 (65%), Positives = 291/386 (75%), Gaps = 25/386 (6%)

Query: 1   MMKEESNDGSGGGNSWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
           M+KEESN G+   NSWARVCDTCR+A CTVYC+AD AYLCS CD+ VH ANRVA RHERV
Sbjct: 1   MLKEESN-GAAAANSWARVCDTCRSAPCTVYCRADSAYLCSGCDATVHAANRVASRHERV 59

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
            VCE+CE APA+FLCKADAASLC ACDA+IHSANPLARRHQRVPILPISG       G+T
Sbjct: 60  SVCEACESAPASFLCKADAASLCTACDADIHSANPLARRHQRVPILPISGGQI--MVGST 117

Query: 121 PEGHHED-------------DQDEEEAASWLLLSNPGKNCGNGNNGNNN----GFLFGGE 163
           P    ED             ++DE+EAASWLLL NP KN  N N+ +N+    GF FG E
Sbjct: 118 PADTTEDGFLSQEGDEEAVDEEDEDEAASWLLL-NPVKNSNNHNSNSNDPNNNGFFFGVE 176

Query: 164 VDEYLDLVDYTGGNQYLDQYSNGNNNQQQHGVAQK-GYVGDSVVPVQCELANKDHHRHQQ 222
           VDEYLD V+Y   +Q     +   N++  +GV  K  Y GDSVVPVQ         + QQ
Sbjct: 177 VDEYLDFVEYNSSDQNQFSGTTATNDRHNYGVPHKISYGGDSVVPVQYGEGKVTQMQMQQ 236

Query: 223 --NF-QLGLDYDSSKAGYSYNGSISHSVSVSSTDLGVVPESTMSDISISHSRPPKGTIDL 279
             NF QLG++Y+SSKA Y Y+GSISH+VSVSS D+GVVP STMS++S+ H R PKGTIDL
Sbjct: 237 KHNFHQLGMEYESSKAAYGYDGSISHTVSVSSMDVGVVPNSTMSEMSVCHPRTPKGTIDL 296

Query: 280 FSGPPIQMPPQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 339
           F+GP IQMP QL+PMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT
Sbjct: 297 FNGPTIQMPTQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 356

Query: 340 DAEVEVDQMFSATLMTDPGYGIVPSF 365
           D EVE+DQ+FS +LM + GY IVPS+
Sbjct: 357 DIEVEMDQIFSTSLMGETGYSIVPSY 382

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.915	0.940	0.483	2.5e-74
TAIR|locus:2143206	373	CO "CONSTANS" [Arabidopsis tha	0.534	0.522	0.480	3.7e-74
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.936	0.985	0.464	4.8e-71
UNIPROTKB|Q9FDX8	395	HD1 "Zinc finger protein HD1"	0.917	0.848	0.397	3.7e-55
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.334	0.414	0.439	2e-43
TAIR|locus:2172545	355	COL5 "CONSTANS-like 5" [Arabid	0.232	0.239	0.494	1.4e-40
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.605	0.646	0.385	3.6e-34
UNIPROTKB|Q9FE92	407	Hd1 "Heading day 1" [Oryza sat	0.542	0.486	0.413	1.4e-32
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.536	0.756	0.387	2.3e-30
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.249	0.274	0.354	8.1e-17

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 176/364 (48%), Positives = 207/364 (56%)

Query:    16 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXX 75
             WA+ CDTCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV VC+SCE+APAAF  
Sbjct:     8 WAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFC 67

Query:    76 XXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG-------RTGAT-PE----- 122
                          EIHSANPLARRHQRVPILPIS   Y          T  T PE     
Sbjct:    68 KADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVL 127

Query:   123 GHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGN-QYLD 181
             G          AASWLL +                       DE+L+LVDY+  + Q+ D
Sbjct:   128 GQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTD 178

Query:   182 QYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNG 241
             Q    N  Q    V Q+ Y  D VVP+Q E++ K  ++ QQNFQL ++  S  A  S NG
Sbjct:   179 Q---SNQYQLDCNVPQRSYGEDGVVPLQIEVS-KGMYQEQQNFQLSINCGSWGALRSSNG 234

Query:   242 XXXXXXXXXXTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVL 301
                        DLGVVPEST SD ++S+ R PK   D    PP QM   L+P DREARVL
Sbjct:   235 SLSHMVNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQPPYPPAQM---LSPRDREARVL 291

Query:   302 RYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGI 361
             RY            IRYASRKAYAE RPRIKGRFAK+ D + E +Q FS  +  D GYGI
Sbjct:   292 RYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITFDTGYGI 351

Query:   362 VPSF 365
             VPSF
Sbjct:   352 VPSF 355

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2143206 CO "CONSTANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 99/206 (48%), Positives = 118/206 (57%)

Query:   165 DEYLDLVDYTGGNQY--LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRH-Q 221
             DEYL+LVDY     Y    +YS    +QQ   V Q  Y GD VVP++ E  ++ H  H Q
Sbjct:   174 DEYLNLVDYNSSMDYKFTGEYSQ---HQQNCSVPQTSYGGDRVVPLKLE-ESRGHQCHNQ 229

Query:   222 QNFQLGLDYDSSKAGYSYNGXXXXXXXXXXTDLGVVPESTMSDISISHSRPPKGTIDLFS 281
             QNFQ  + Y SS   Y+ NG           + GVVPEST    + SH R PKGT++   
Sbjct:   230 QNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQP 289

Query:   282 GPPIQM--PPQLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRT 339
              P  QM    QL+PMDREARVLRY            IRYASRKAYAE RPR+ GRFAKR 
Sbjct:   290 DPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR- 348

Query:   340 DAEVEVDQMFSATLMTDPGYGIVPSF 365
             + E E +Q F+  LM + GYGIVPSF
Sbjct:   349 EIEAE-EQGFNTMLMYNTGYGIVPSF 373

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IGI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010018 "far-red light signaling pathway" evidence=IMP

GO:0010218 "response to far red light" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 172/370 (46%), Positives = 203/370 (54%)

Query:     1 MMKEEXXXXXXXXXXWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERV 60
             M+KEE          WAR CDTCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV
Sbjct:     1 MLKEESNESGT----WARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERV 56

Query:    61 FVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGAT 120
              VC+SCE APAAF               EIHSANPLARRHQRVPILP+S +       A 
Sbjct:    57 RVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--AP 114

Query:   121 PEGHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGG--NQ 178
              E            ASWLL +                        EYLDLVDY+    NQ
Sbjct:   115 SETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQ 166

Query:   179 YLD-QYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGY 237
             + D QY++   +    GV     V +S   +Q     +     Q     G    SS A Y
Sbjct:   167 FEDNQYTHYQRSFGGDGVVPL-QVEESTSHLQ-----QSQQNFQLGINYGF---SSGAHY 217

Query:   238 SYNGXXXXXXXXXXT--DLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMD 295
             + N           +  D+ VVPEST SDI++ H R  K TID  SGPP Q+  QLTPM+
Sbjct:   218 NNNSLKDLNHSASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPME 277

Query:   296 REARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMT 355
             REARVLRY            IRYASRKAYAE RPRIKGRFAKR + E E +++FS +LM+
Sbjct:   278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMS 337

Query:   356 DPGYGIVPSF 365
             + GYGIVPSF
Sbjct:   338 ETGYGIVPSF 347

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

UNIPROTKB|Q9FDX8 HD1 "Zinc finger protein HD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 151/380 (39%), Positives = 182/380 (47%)

Query:    16 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXX 75
             WAR CD CRAA   VYC+AD AYLC++CD+RVH ANRVA RHERV VCE+CE+APAA   
Sbjct:    31 WARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALAC 90

Query:    76 XXXXXXXXXXXXXEIHSANPLARRHQRVPILPISG-SVYGGRTGATPEGHHXXXXXXXXA 134
                          ++HSANPL       P + I   SV      AT              
Sbjct:    91 RADAAALCVACDVQVHSANPL-------PAITIPATSVLAEAVVATAT---VLGDKDEEV 140

Query:   135 ASWLLLSXXXXXXXXXX------------XXXXXXXXXXXEVDEYLDLVDYTGGNQYLDQ 182
              SWLLLS                                 EVDEY DLV Y   N Y D 
Sbjct:   141 DSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYFDLVGY---NSYYDN 197

Query:   183 YSNGNNN-----------QQQHGVAQKGYV----GDSVVPVQCELANKDHHRHQQNFQLG 227
                 N +           QQQ    QK +      + VVP Q  + ++  H       +G
Sbjct:   198 RIENNQDRQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVPSQITMLSEQQHSGYG--VVG 255

Query:   228 LDYDSSK-AGYS-YNGXXXXXXXXXXTDLGVVPESTMSDISISHSRPPKGTIDLFSGPPI 285
              D  +S  AG S Y             + G+VP+ST+ D+  S    P G I+LFSGP +
Sbjct:   256 ADQAASMTAGVSAYTDSISNSISFSSMEAGIVPDSTVIDMPNSRILTPAGAINLFSGPSL 315

Query:   286 QMPPQLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEV 345
             QM    + MDREARVLRY            IRY +RKAYAE RPRIKGRFAKR+D ++EV
Sbjct:   316 QMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQIEV 375

Query:   346 DQMFSATLMTDPGYGIVPSF 365
             DQMFS   ++D  YG VP F
Sbjct:   376 DQMFSTAALSDGSYGTVPWF 395

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 54/123 (43%), Positives = 75/123 (60%)

Query:    17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXX 76
             +R+CD+C++ A T++C+AD A+LC  CD ++H AN++A RHERV++CE CEQAPA     
Sbjct:     5 SRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCK 64

Query:    77 XXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAAS 136
                         +IHSANPL+RRH+RVPI P   +V G    A+   +          AS
Sbjct:    65 ADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTAS 123

Query:   137 WLL 139
             WLL
Sbjct:   124 WLL 126

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2172545 COL5 "CONSTANS-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
 Identities = 44/89 (49%), Positives = 55/89 (61%)

Query:    17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXX 76
             AR CD C++    V+C+ D A+LC ACD+R+H   R    HERV+VCE CEQAPAA    
Sbjct:    19 ARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFTR----HERVWVCEVCEQAPAAVTCK 74

Query:    77 XXXXXXXXXXXXEIHSANPLARRHQRVPI 105
                         +IHSANPLA RH+RVP+
Sbjct:    75 ADAAALCVSCDADIHSANPLASRHERVPV 103

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0042631 "cellular response to water deprivation" evidence=RCA

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 89/231 (38%), Positives = 110/231 (47%)

Query:    16 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXX 75
             WAR CD CRAA   VYC+AD AYLC++CD+RVH ANRVA RHERV VCE+CEQAPAA   
Sbjct:    31 WARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACEQAPAALAC 90

Query:    76 XXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXX-- 133
                          ++HSANPLARRHQRVP+ P+        T    E             
Sbjct:    91 RADAAALCVACDVQVHSANPLARRHQRVPVAPLPAITIPA-TSVLAEAVVATATVLGGKD 149

Query:   134 --AASWLLLSXXXXXXXXXXXXXXXXXXXXX-EVDEYLDLVDYTGGNQYLDQYSNGNNNQ 190
                 SW++LS                      EVDEY DLV Y   N Y D     NN  
Sbjct:   150 EEVDSWIILSKDSNNNNNNNNSNSSNNGMYFGEVDEYFDLVGY---NSYYDNRIE-NNQD 205

Query:   191 QQHGVAQKGYVGDSVVPVQCELANKDHHRHQQNFQLGLDYDSSKAGYSYNG 241
             QQ+G+ ++         +Q E A K+        Q+ +  +   +GY   G
Sbjct:   206 QQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVPSQITMLSEQQHSGYGVVG 256

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FE92 Hd1 "Heading day 1" [Oryza sativa (taxid:4530)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 91/220 (41%), Positives = 113/220 (51%)

Query:   163 EVDEYLDLVDYTGGNQYLDQYSNGNNN-----------QQQHGVAQKGYV----GDSVVP 207
             EVDEY DLV Y   N Y D     N +           QQQ    QK +      + VVP
Sbjct:   193 EVDEYFDLVGY---NSYYDNRIENNQDRQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVP 249

Query:   208 VQCELANKDHHRHQQNFQLGLDYDSSK-AGYS-YNGXXXXXXXXXXTDLGVVPESTMSDI 265
              Q  + ++  H       +G D  +S  AG S Y             + G+VP+ST+ D+
Sbjct:   250 SQITMLSEQQHSGYG--VVGADQAASMTAGVSAYTDSISNSISFSSMEAGIVPDSTVIDM 307

Query:   266 SISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYA 325
               S    P G I+LFSGP +QM    + MDREARVLRY            IRY +RKAYA
Sbjct:   308 PNSRILTPAGAINLFSGPSLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYA 367

Query:   326 ETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF 365
             E RPRIKGRFAKR+D ++EVDQMFS   ++D  YG VP F
Sbjct:   368 EARPRIKGRFAKRSDVQIEVDQMFSTAALSDGSYGTVPWF 407

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 84/217 (38%), Positives = 102/217 (47%)

Query:    16 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXX 75
             WAR CD CRAA   VYC+AD AYLC++CD+RVH ANRVA RHERV VCE+CE+APAA   
Sbjct:    31 WARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALAC 90

Query:    76 XXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXX-- 133
                          +++SANPLARRHQRVP+ P+        T    E             
Sbjct:    91 RADAAALCVACDVQVYSANPLARRHQRVPVAPLPAITIPA-TSVLAEAVVATATVLGDKD 149

Query:   134 --AASWLLLSXXXXXXXXXX------------XXXXXXXXXXXEVDEYLDLVDYTGGNQY 179
                 SWLLLS                                 EVDEY DLV Y   N Y
Sbjct:   150 EEVDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYFDLVGY---NSY 206

Query:   180 LDQYSNGNNNQQQHGVAQKGYVGDSVVPVQCELANKD 216
              D     NN  +Q+G+ ++         +Q E A K+
Sbjct:   207 YDNRIE-NNQDRQYGMHEQQEQQQQQQEMQKEFAEKE 242

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
 Identities = 33/93 (35%), Positives = 51/93 (54%)

Query:    18 RVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXX 77
             R+CD C ++   VYCKAD A LC ACD +VHVAN++  +H R  +C+SC ++P++     
Sbjct:    11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70

Query:    78 XXXXXXXXXXXEIHSANPLARRHQRVPILPISG 110
                        + H+A+  +  H R P    +G
Sbjct:    71 ERSVLCQNCDWQHHTAS--SSLHSRRPFEGFTG 101

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FDX8	HD1_ORYSJ	No assigned EC number	0.4712	0.9287	0.8582	yes	no
Q96502	COL2_ARATH	No assigned EC number	0.6216	0.9369	0.9855	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
pfam06203	45	pfam06203, CCT, CCT motif	7e-25
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	4e-09
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	8e-09
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	5e-07
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	5e-05
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	3e-04

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 95.0 bits (237), Expect = 7e-25
 Identities = 32/45 (71%), Positives = 41/45 (91%)

Query: 296 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTD 340
           REA +LRY+EK+KTRKF+K IRYASRKA AE+RPR+KGRF K+++
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 62  VCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI 105
            C+S    PA F C+   A LC  CD   H      R H  V +
Sbjct: 5   KCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 50.4 bits (121), Expect = 8e-09
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 61  FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI 105
            +C+   + P +  C+ D A LC  CD  +H        H+RVP+
Sbjct: 1   RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 18 RVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFV 62
          R+CD       +++C+ D A LC  CD  VH        H RV +
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL 39

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 6/47 (12%)

Query: 59  RVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI 105
           +  +C   E+ P    C+     LC  C    H      + H  VP+
Sbjct: 2   KERLCPEHEEKPLELYCEDCQQLLCEECALSGH------KGHTVVPL 42

Length = 42

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVH 48
          A  CD+        +C+   A LC  CD   H
Sbjct: 3  APKCDSHGDEPAEFFCEECGALLCRTCDEAEH 34

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.8
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.18
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.08
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	96.62
smart00336	42	BBOX B-Box-type zinc finger.	96.59
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.35
smart00336	42	BBOX B-Box-type zinc finger.	96.01
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	95.82
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.3
KOG4367	699	consensus Predicted Zn-finger protein [Function un	82.57

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.80  E-value=1.7e-20  Score=135.52  Aligned_cols=45  Identities=62%  Similarity=1.074  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhhhcccCCCcccchhhhhhhhhCCCCCcccccCCc
Q 017819          296 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTD  340 (365)
Q Consensus       296 R~~~v~ry~eKr~~R~f~k~irY~~Rk~~A~~RpRikGrF~k~~~  340 (365)
                      |+++|+||+|||++|+|+|+|+|++||++|+.|||||||||+.++
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            789999999999999999999999999999999999999999864

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.18  E-value=0.00024  Score=48.34  Aligned_cols=38  Identities=37%  Similarity=0.785  Sum_probs=33.4

Q ss_pred             cccccCCCCceEEecCCCcccCccccCCCccchhhhcccccccc
Q 017819           19 VCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFV   62 (365)
Q Consensus        19 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~l   62 (365)
                      .|+.+..+++.+||..|.+.+|..|+...|.      .|.++++
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6899998899999999999999999988775      5888764

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.08  E-value=0.00034  Score=47.61  Aligned_cols=39  Identities=38%  Similarity=0.928  Sum_probs=34.0

Q ss_pred             ccccccCCccceeecccccchhcccccccccCCCCcCCCcceeec
Q 017819           61 FVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI  105 (365)
Q Consensus        61 ~lCd~C~~apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv  105 (365)
                      ++|+.++..++.+||..|...||..|+...|.      .|.++||
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36888888899999999999999999988774      5998875

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=96.62  E-value=0.00068  Score=61.79  Aligned_cols=93  Identities=31%  Similarity=0.359  Sum_probs=67.7

Q ss_pred             CccccccCCCCceEEecCCCcccCccccCCCccchhhhccccccccccccCCccce--eecccccchh----cccccccc
Q 017819           17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAA--FLCKADAASL----CAACDAEI   90 (365)
Q Consensus        17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~lCd~C~~apA~--v~C~aD~a~L----C~~CD~~i   90 (365)
                      ...|+.|....... |..|.+.+|..|+.+++..+.+...|.++.+|..|....+.  +.+..+...+    +..++...
T Consensus         5 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (340)
T KOG1601|consen    5 AEDLDSCRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFV   83 (340)
T ss_pred             cccccccCcccccc-cccccccCCcccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccc
Confidence            34566666655555 99999999999999999998777788999999988733322  4444444444    66677777


Q ss_pred             cCCCCcCCCcceeeccCCCC
Q 017819           91 HSANPLARRHQRVPILPISG  110 (365)
Q Consensus        91 HsaN~La~rH~Rvpv~~~~g  110 (365)
                      |..++...+|..+++.+...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~  103 (340)
T KOG1601|consen   84 SENNPNSLRHPPVPSMPSSN  103 (340)
T ss_pred             ccccCCCCCCCCcccccccc
Confidence            87778888888877665543

>smart00336 BBOX B-Box-type zinc finger

Probab=96.59  E-value=0.0016  Score=44.89  Aligned_cols=41  Identities=39%  Similarity=0.720  Sum_probs=35.1

Q ss_pred             ccccccccCCccceeecccccchhcccccccccCCCCcCCCcceeec
Q 017819           59 RVFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI  105 (365)
Q Consensus        59 Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv  105 (365)
                      |.++|..+...++.+||..|...||..|....|      +.|.++||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            578899999889999999999999999998766      45877764

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.35  E-value=0.002  Score=44.91  Aligned_cols=40  Identities=28%  Similarity=0.626  Sum_probs=34.7

Q ss_pred             cccccccCCccceeecccccchhcccccccccCCCCcCCCcceeec
Q 017819           60 VFVCESCEQAPAAFLCKADAASLCAACDAEIHSANPLARRHQRVPI  105 (365)
Q Consensus        60 v~lCd~C~~apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rvpv  105 (365)
                      .++|..|...++.+||..+...||..|....|..      |..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4689999998899999999999999999998864      888875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.01  E-value=0.0051  Score=42.31  Aligned_cols=40  Identities=28%  Similarity=0.582  Sum_probs=33.2

Q ss_pred             CccccccCCCCceEEecCCCcccCccccCCCccchhhhcccccccc
Q 017819           17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFV   62 (365)
Q Consensus        17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~l   62 (365)
                      .+.|..+...++.+||..|.+.+|..|....|      ..|.+++|
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            46799999888999999999999999998766      34666553

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=95.82  E-value=0.0052  Score=40.35  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhhhcccCCCcccch
Q 017819          293 PMDREARVLRYREKKKTRKFEKTIRYA  319 (365)
Q Consensus       293 ~~~R~~~v~ry~eKr~~R~f~k~irY~  319 (365)
                      |..|.+.|+||.||||.|... +..|.
T Consensus         1 P~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    1 PIARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             -----HHHHHHHHHH------------
T ss_pred             CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            457999999999999999987 66664

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.30  E-value=0.0087  Score=41.72  Aligned_cols=40  Identities=23%  Similarity=0.451  Sum_probs=34.0

Q ss_pred             CccccccCCCCceEEecCCCcccCccccCCCccchhhhcccccccc
Q 017819           17 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFV   62 (365)
Q Consensus        17 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~l   62 (365)
                      ...|..|...++.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            5679999998899999999999999999988866      776654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=82.57  E-value=0.45  Score=49.72  Aligned_cols=75  Identities=24%  Similarity=0.487  Sum_probs=60.2

Q ss_pred             CccccccCCC--CceEEecCCCcccCccccCCCccchhhhccccccccc-------------cccCCcc---ceeecccc
Q 017819           17 ARVCDTCRAA--ACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVC-------------ESCEQAP---AAFLCKAD   78 (365)
Q Consensus        17 ~~~Cd~C~~~--~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv~lC-------------d~C~~ap---A~v~C~aD   78 (365)
                      +..|.+|+.+  .|.|+|.....|.|.-|..+.|-+-.-.++|.-++.-             .-|..++   -++||.++
T Consensus       162 a~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~c  241 (699)
T KOG4367|consen  162 ALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQC  241 (699)
T ss_pred             hhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEec
Confidence            5679999987  4899999999999999999999877766777655432             2455554   46899999


Q ss_pred             cchhccccccccc
Q 017819           79 AASLCAACDAEIH   91 (365)
Q Consensus        79 ~a~LC~~CD~~iH   91 (365)
                      .+..|-.|-.+..
T Consensus       242 k~pvc~~clee~k  254 (699)
T KOG4367|consen  242 KMPVCYQCLEEGK  254 (699)
T ss_pred             CChHHHHHHHhhc
Confidence            9999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 12/41 (29%)

Query: 305 EKKKTRKFEKTIRYASRKAYA-ETRPRIKGRFAKRTDAEVE 344
           EK+  +K +     AS K YA ++ P      A    A +E
Sbjct: 18  EKQALKKLQ-----ASLKLYADDSAP------ALAIKATME 47

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 41/170 (24%)

Query: 217 HHRHQQNFQLGLDYDSSKAGYSYNGSISHSVSVSSTDLGV--VPESTMSDISISHSRPPK 274
           HH H        D+++ +  Y Y   +S        +     V +   S +S       K
Sbjct: 2   HHHHHM------DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-------K 48

Query: 275 GTIDLFSGPPIQMPPQLTPMDREARVLRYREKKKTRKFEKT------------IRYASR- 321
             ID      I     ++   R    L  ++++  +KF +             I+   R 
Sbjct: 49  EEIDHI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 322 -----KAYAETRPRIKG---RFAKRTDAEVE-VDQMFSATLMTDPGYGIV 362
                + Y E R R+      FAK   + ++   ++  A L   P   ++
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.89
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	94.95
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.94
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	91.79
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	87.89

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.89  E-value=4.4e-06  Score=67.14  Aligned_cols=82  Identities=21%  Similarity=0.444  Sum_probs=64.7

Q ss_pred             ccccccCC---CCceEEecCCCcccCccccCCCccchhhhcccccc-c---------cccccCCccceeecccccchhcc
Q 017819           18 RVCDTCRA---AACTVYCKADMAYLCSACDSRVHVANRVAFRHERV-F---------VCESCEQAPAAFLCKADAASLCA   84 (365)
Q Consensus        18 ~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~rvH~AN~LasrH~Rv-~---------lCd~C~~apA~v~C~aD~a~LC~   84 (365)
                      ..|+.|..   .+|+.+|....+.||..|...+|..++...+|..+ +         +|+.....+-.+||..|...+|.
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~   83 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICA   83 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECH
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccch
Confidence            56999984   68999999999999999999999887766788765 2         34444334567999999999999


Q ss_pred             cccc-cccCCCCcCCCcceeec
Q 017819           85 ACDA-EIHSANPLARRHQRVPI  105 (365)
Q Consensus        85 ~CD~-~iHsaN~La~rH~Rvpv  105 (365)
                      .|.. ..|..      |.-+||
T Consensus        84 ~C~~~~~H~~------H~~~~l   99 (101)
T 2jun_A           84 LCKLVGRHRD------HQVAAL   99 (101)
T ss_dssp             HHHHHTTTSS------SCBCCC
T ss_pred             hcCCCCCcCC------CCeecC
Confidence            9986 67743      665554

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.94  E-value=0.019  Score=45.56  Aligned_cols=43  Identities=23%  Similarity=0.484  Sum_probs=37.3

Q ss_pred             ccccccCC---ccceeecccccchhcccccccccCCCCcCCCccee
Q 017819           61 FVCESCEQ---APAAFLCKADAASLCAACDAEIHSANPLARRHQRV  103 (365)
Q Consensus        61 ~lCd~C~~---apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rv  103 (365)
                      ..|++|..   .+|+.+|..+...||..|...+|..++...+|..+
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            57999984   57999999999999999999999877766788876

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=91.79  E-value=0.05  Score=33.30  Aligned_cols=19  Identities=42%  Similarity=0.557  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHhhhcccCCC
Q 017819          296 REARVLRYREKKKTRKFEK  314 (365)
Q Consensus       296 R~~~v~ry~eKr~~R~f~k  314 (365)
                      |.+.|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            5678999999999987654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=87.89  E-value=0.2  Score=38.79  Aligned_cols=44  Identities=23%  Similarity=0.460  Sum_probs=36.2

Q ss_pred             cccccccCC---ccceeecccccchhcccccccccCCCCcCCCccee
Q 017819           60 VFVCESCEQ---APAAFLCKADAASLCAACDAEIHSANPLARRHQRV  103 (365)
Q Consensus        60 v~lCd~C~~---apA~v~C~aD~a~LC~~CD~~iHsaN~La~rH~Rv  103 (365)
                      ...|++|..   .+|...|..+.+.+|..|-...|...+...+|.-+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            367999985   56889999999999999988878876666778654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	86.11

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.16  Score=36.41  Aligned_cols=49  Identities=27%  Similarity=0.445  Sum_probs=37.8

Q ss_pred             hhhccccccccccccCCccceeecccccchhcccccc-cccCCCCcCCCcceeecc
Q 017819           52 RVAFRHERVFVCESCEQAPAAFLCKADAASLCAACDA-EIHSANPLARRHQRVPIL  106 (365)
Q Consensus        52 ~LasrH~Rv~lCd~C~~apA~v~C~aD~a~LC~~CD~-~iHsaN~La~rH~Rvpv~  106 (365)
                      ++...+.|...|..-...+..+||..|...+|..|.. +.|.      .|.-++|.
T Consensus         3 P~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk------~H~~~~i~   52 (71)
T d2djaa1           3 PVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN   52 (71)
T ss_dssp             CCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred             CCCccccCCCcCcccCCccceeEcCCCCceeccccccCCCCC------CCcCcCHH
Confidence            4455678888898887778899999999999999964 4563      37666655