Citrus Sinensis ID: 017823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFFFLTTFMHFFLPETKNVPIELMDKCWREHWFWRKIVDDVERK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHccHHHHHHHHHHHHHHHccHccHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHEEEEEHHHHHHHccccccccEcccccccccHcHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHccHHHHHccccccc
Coil and Loop (DISEMBL)
mkedtnisnyskfdsQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQsvplylsemappknrgafnigFQVCVATAVLSANLLnygtqkikvgwgwRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSImadqigdhggfSIGYAYLILVLICVYKAgfafswgplrwlvpsenfpleiisAGQIITVAAGVFFFLTTFMhfflpetknvpieLMDKCWREHWFWRKIVDDVERK
Flexible Loop (DISEMBL)
mkedtnisnyskfdSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFFFLTTFMHFFLPETKNVPIELMDKCWREHWFWRKIVDDVERK
Low Complexity Region (SEG)
MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVtgslgtistslsmilADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVffflttfmhfflPETKNVPIELMDKCWREHWFWRKIVDDVERK
Disordered region (IsUnstruct)
***********KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFFFLTTFMHFFLPETKNVPIELMDKCWREHWFWRKIVD*****
Disordered Region (DISOPRED)
*****NI**YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFFFLTTFMHFFLPETKNVPIELMDKCWREHWFWR**VD*****
Disordered Region (DISEMBL)
********NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFFFLTTFMHFFLPETKNVPIELMDKCWREHWFWRKIVDDVERK
Disordered Region (DISPRO)
*******SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFFFLTTFMHFFLPETKNVPIELMDKCWREHWFWRKIVD*****
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFFFLTTFMHFFLPETKNVPIELMDKCWREHWFWRKIVDDVERK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q07423	510	Hexose carrier protein HE	N/A	no	0.969	0.694	0.481	3e-97
Q39228	514	Sugar transport protein 4	yes	no	0.956	0.678	0.396	3e-71
O65413	508	Sugar transport protein 1	no	no	0.964	0.692	0.384	1e-63
O04249	513	Sugar transport protein 7	no	no	0.978	0.695	0.360	9e-62
Q8GW61	504	Sugar transport protein 1	no	no	0.980	0.710	0.341	2e-55
Q9LNV3	498	Sugar transport protein 2	no	no	0.978	0.716	0.356	1e-52
Q8L7R8	514	Sugar transport protein 3	no	no	0.526	0.373	0.520	2e-49
P23586	522	Sugar transport protein 1	no	no	0.569	0.398	0.441	1e-47
Q9LT15	514	Sugar transport protein 1	no	no	0.621	0.441	0.401	2e-47
Q9SX48	517	Sugar transport protein 9	no	no	0.526	0.371	0.439	2e-46

>sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1

 Score =  355 bits (911), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 213/442 (48%), Positives = 270/442 (61%), Gaps = 88/442 (19%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MKEDT ISNY KFDSQLLT+FTSSLY+AGL+AS FASSVTRAFGRK SIL+    FLA +
Sbjct: 64  MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXA 123

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD------LLNNFQLVLICWL 114
           AL GAA N+YMLIFGRVLLGVG+GFANQ      Y S+         + N FQ  +   +
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVP--LYLSEMAPPRYRGAINNGFQFSV--GI 179

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGT------------------- 155
            ++   L      K  G +  G+++ +A A + A +L +G                    
Sbjct: 180 GALSANLINYGTEKIEGGW--GWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237

Query: 156 -----QKIKVGWGWRISL-----------------------KYRLQFVMAILIPFFQHVT 187
                Q+++     +  L                       KYR Q VMA+ IPFFQ VT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVI+FYAP+LFRTI L ES SLL S+IVTG +G+ ST +SM++ D+LGR+ LF+ GG+
Sbjct: 298 GINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGV 356

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL 307
           QM V+++M+GSIMA ++GDHGG   GYAY++L+LIC+Y AGF +SWGPL WLVPSE FPL
Sbjct: 357 QMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPL 416

Query: 308 EIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETKN 339
           EI SAGQ I VA                     +G+FFF       +T F+HF LPETK 
Sbjct: 417 EIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKK 476

Query: 340 VPIELMDKCWREHWFWRKIVDD 361
           VPIE MD  WR+HWFW+KI+ +
Sbjct: 477 VPIEKMDIVWRDHWFWKKIIGE 498

Active uptake of hexoses. Probable glucose/hydrogen symport.
Ricinus communis (taxid: 3988)

>sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1

 Score =  269 bits (687), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 172/434 (39%), Positives = 234/434 (53%), Gaps = 85/434 (19%)

Query: 8   SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF 67
           + Y +FDSQLLT FTSSLY+A L++SLFAS++TR FGRK S+ +    F  GSA  G A 
Sbjct: 71  NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQ 130

Query: 68  NIYMLIFGRVLLGVGIGFANQ-VSVWLFYFSQT---CDLLNNFQLVLICWLQSVPLYLSE 123
           NI ML+ GR+LLG G+GFANQ V V+L   +         N FQ+ +I  +    +    
Sbjct: 131 NIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYF 190

Query: 124 MAPPKNRGAFNIGFQVCVATAVLSANLLNYG----------------------------- 154
            A  K     NIG+++ +  A + A ++  G                             
Sbjct: 191 TAQMKG----NIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEMLQSIRG 246

Query: 155 -----------------TQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAP 197
                            ++++K  W   +  +YR Q +M   IPFFQ +T INVI+FYAP
Sbjct: 247 TNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAP 306

Query: 198 VLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIG 257
           VLF+T+      SLL SA+VTG +  + T +S+   DR GR++LFL GGIQMLVS++ IG
Sbjct: 307 VLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIG 365

Query: 258 SIMADQIGDHGGFSIGY--AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQI 315
           +++  + G  G  +IG   A LI+ LIC+Y AGFA+SWGPL WLVPSE  PLEI SA Q 
Sbjct: 366 AMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQA 425

Query: 316 ITVAAGVFF----------------------------FLTTFMHFFLPETKNVPIELMDK 347
           I V+  +FF                             +T F++  LPETKNVPIE M++
Sbjct: 426 INVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEMNR 485

Query: 348 CWREHWFWRKIVDD 361
            W+ HWFW K + D
Sbjct: 486 VWKAHWFWGKFIPD 499

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose.

Arabidopsis thaliana (taxid: 3702)

>sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1

 Score =  243 bits (621), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 169/440 (38%), Positives = 226/440 (51%), Gaps = 88/440 (20%)

Query: 2   KEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSA 61
           K+D + + Y +FDS  LT FTSSLY+A L +SL AS VTR FGRK S+L+    F AG+ 
Sbjct: 66  KKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGAL 125

Query: 62  LRGAAFNIYMLIFGRVLLGVGIGFANQ-VSVWL---------------FYFSQTCDLLN- 104
           L G A  ++MLI GR+LLG GIGF NQ V ++L               F  S T  +L  
Sbjct: 126 LNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 185

Query: 105 ---NFQLVLICW----------------------LQSVP--------LYLSEMAPPKNRG 131
              NF    I W                      L   P          L+E    K RG
Sbjct: 186 NVLNFFFSKISWGWRLSLGGAVVPALIITVGSLILPDTPNSMIERGQFRLAEAKLRKIRG 245

Query: 132 AFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINV 191
             +I  ++        A+ L      ++  W   +  KYR    MAILIP FQ +T INV
Sbjct: 246 VDDIDDEINDLIIASEASKL------VEHPWRNLLQRKYRPHLTMAILIPAFQQLTGINV 299

Query: 192 ISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLV 251
           I FYAPVLF+TI    S + L+SA+VTG +   +T +S+   D+ GR+ LFL GG QML+
Sbjct: 300 IMFYAPVLFQTIGFG-SDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGGFQMLI 358

Query: 252 SRVMIGSIMADQIGDHGGFSI---GYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLE 308
           S+V + + +  + G  G   +    YA ++++ IC+Y A FA+SWGPL WLVPSE FPLE
Sbjct: 359 SQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFICIYVAAFAWSWGPLGWLVPSEIFPLE 418

Query: 309 IISAGQIITVAAGVFF----------------------------FLTTFMHFFLPETKNV 340
           I SA Q ITV+  + F                             ++ F++ FLPET+ V
Sbjct: 419 IRSAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIFVYLFLPETRGV 478

Query: 341 PIELMDKCWREHWFWRKIVD 360
           PIE M++ WR HW+W K VD
Sbjct: 479 PIEEMNRVWRSHWYWSKFVD 498

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1

 Score =  237 bits (605), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 157/435 (36%), Positives = 228/435 (52%), Gaps = 78/435 (17%)

Query: 2   KEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSA 61
           K+  + SNY K+D+Q L  FTSSLY+AGL+++L AS +TR +GR+ASI+    +FL GS 
Sbjct: 69  KKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSG 128

Query: 62  LRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQ----------------------- 98
           L   A N+ ML+ GR++L  G+G          Y S+                       
Sbjct: 129 LNAGAVNLAMLLAGRIML--GVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIF 186

Query: 99  TCDLLNNFQLVLICW-------LQSVPLYLSEMAP---PK------NRGAFNIGFQVCV- 141
           T +++N     L  W       L + P  L  +     P+       RG    G +V V 
Sbjct: 187 TANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVK 246

Query: 142 --ATAVLSANLLNYG-----TQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISF 194
              T  ++A L +          IK  +   +  ++R Q VMAI +P FQ +T IN I F
Sbjct: 247 LRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILF 306

Query: 195 YAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRV 254
           YAPVLF+T+    + SL  SA+ TG++  +ST +S+ L DRLGR+ L + GGIQM++ +V
Sbjct: 307 YAPVLFQTMGFGGNASLYSSAL-TGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQV 365

Query: 255 MIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQ 314
           ++  I+  + GD+   S GY+ ++++ IC++   F +SWGPL W +PSE FPLE  SAGQ
Sbjct: 366 IVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQ 425

Query: 315 IITVAA---------------------GVFFF-------LTTFMHFFLPETKNVPIELMD 346
            ITVA                      G+F F       +T F++F LPETK VPIE M 
Sbjct: 426 SITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMT 485

Query: 347 KCWREHWFWRKIVDD 361
             W +HWFW+K++ D
Sbjct: 486 LLWSKHWFWKKVLPD 500

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 222/433 (51%), Gaps = 75/433 (17%)

Query: 6   NISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA 65
           N ++Y K+D+Q+LT FTSSLY AGLI++  AS VTR +GR+ SILV S +F  G  +  A
Sbjct: 73  NETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAA 132

Query: 66  AFNIYMLIFGRVLLGVGIGFANQV---------------SVWLFYFSQTC------DLLN 104
           A NI MLI GR+ LG+GIGF NQ                +V   +   TC      +L+N
Sbjct: 133 AKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLIN 192

Query: 105 NFQLVLICW-------LQSVP---LYLSEMAPPKNRGAFNIGFQVCVATAVL-----SAN 149
                +  W       L +VP   ++L  +  P+   +     ++  A AVL     + N
Sbjct: 193 YKTEQIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNN 252

Query: 150 L---------LNYGTQKIKVGWGWRISLKYRLQFVM-AILIPFFQHVTRINVISFYAPVL 199
           +          +   + +K  +   ++ + R Q V+ AI +P FQ +T +N I FYAPV+
Sbjct: 253 IEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVM 312

Query: 200 FRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSI 259
           F+++    S SL+ S I   +L  ++  +SM  AD+ GR+ L L   ++M    V++G  
Sbjct: 313 FQSLGFGGSASLISSTITNAAL-VVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVT 371

Query: 260 MADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVA 319
           +A + G+          +++VLIC++   +  SWGP+ WLVPSE FPLE  SAGQ + V 
Sbjct: 372 LALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVC 431

Query: 320 AGVFF-------FLT---------------------TFMHFFLPETKNVPIELMDKCWRE 351
             +FF       FL                      +F++F LPETK VPIE +   WR+
Sbjct: 432 VNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVYLLWRQ 491

Query: 352 HWFWRKIVDDVER 364
           HW W+K V+DV+ 
Sbjct: 492 HWLWKKYVEDVDE 504

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNV3|STP2_ARATH Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 222/437 (50%), Gaps = 80/437 (18%)

Query: 2   KEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSA 61
           K   + +NY KFD QLL  FTSSLY+AG+ AS  +S V+RAFGRK +I++ S  FL G+ 
Sbjct: 65  KHRVHENNYCKFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGAI 124

Query: 62  LRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLF-------YFSQTCDLLNNFQLVLICWL 114
           L  +A  + MLI GR+LLG GIGF NQ +V LF        +    +++  F + +    
Sbjct: 125 LNLSAQELGMLIGGRILLGFGIGFGNQ-TVPLFISEIAPARYRGGLNVMFQFLITIGILA 183

Query: 115 QSVPLYLSEM------------APPK------------------NRGAFNIGFQVC---- 140
            S   YL+              A P                    RG    G QV     
Sbjct: 184 ASYVNYLTSTLKNGWRYSLGGAAVPALILLIGSFFIHETPASLIERGKDEKGKQVLRKIR 243

Query: 141 -VATAVLSANLLNYGTQ---KIKVGWGWRISL-KYRLQFVMAILIPFFQHVTRINVISFY 195
            +    L  N + Y T+   K+K  +    +  + R   V   L+ FFQ  T INV+ FY
Sbjct: 244 GIEDIELEFNEIKYATEVATKVKSPFKELFTKSENRPPLVCGTLLQFFQQFTGINVVMFY 303

Query: 196 APVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVM 255
           APVLF+T+   ++ SL+ S +VT  +  I+T +S+++ D  GR+ L + G +QM  +++ 
Sbjct: 304 APVLFQTMGSGDNASLI-STVVTNGVNAIATVISLLVVDFAGRRCLLMEGALQMTATQMT 362

Query: 256 IGSIMADQIGDHGGFSIGYA--YLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAG 313
           IG I+   +   G  + G+A   ++L+LICVY +GFA+SWGPL WLVPSE +PLE+ +AG
Sbjct: 363 IGGILLAHLKLVGPIT-GHAVPLIVLILICVYVSGFAWSWGPLGWLVPSEIYPLEVRNAG 421

Query: 314 QIITVAAGVF-------FFLTT---------------------FMHFFLPETKNVPIELM 345
               VA  +        FFL+                      F+ FFLPETK VPIE M
Sbjct: 422 YFCAVAMNMVCTFIIGQFFLSALCRFRSLLFFFFGIMNIIMGLFVVFFLPETKGVPIEEM 481

Query: 346 -DKCWREHWFWRKIVDD 361
            +K W+ H  W+K   D
Sbjct: 482 AEKRWKTHPRWKKYFKD 498

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, xylose, mannose, fructose and galactose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 29/221 (13%)

Query: 169 KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSL 228
           KYR + VMA++IPFFQ VT INV++FYAPVL+RT+   ES SL MS +VTG +GT ST L
Sbjct: 284 KYRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSL-MSTLVTGIVGTSSTLL 342

Query: 229 SMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAG 288
           SM++ DR+GRK LFL+GG+QMLVS+V IG I+       G    GY Y ++VL+CVY AG
Sbjct: 343 SMLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHDGVIKEGYGYAVVVLVCVYVAG 402

Query: 289 FAFSWGPLRWLVPSENFPLEIISAGQIITVA---------------------AGVFFF-- 325
           F +SWGPL WLVPSE FPLEI S  Q +TVA                     AG+FFF  
Sbjct: 403 FGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFFYG 462

Query: 326 -----LTTFMHFFLPETKNVPIELMDKCWREHWFWRKIVDD 361
                +T  +  FLPETKNVPIE +   W +HWFWR++   
Sbjct: 463 GWLVVMTVAVQLFLPETKNVPIEKVVGLWEKHWFWRRMTSK 503

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/240 (44%), Positives = 138/240 (57%), Gaps = 32/240 (13%)

Query: 155 TQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMS 214
           +Q I+  W   +  KYR    MA++IPFFQ +T INVI FYAPVLF TI  +   SL MS
Sbjct: 265 SQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASL-MS 323

Query: 215 AIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIG---DHGGFS 271
           A+VTGS+   +T +S+   DR GR+ LFL GG QML+ + ++ + +  + G     G   
Sbjct: 324 AVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELP 383

Query: 272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFF------- 324
             YA +++  IC+Y AGFA+SWGPL WLVPSE FPLEI SA Q ITV+  + F       
Sbjct: 384 KWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQI 443

Query: 325 FLTTFMHF---------------------FLPETKNVPIELMDKCWREHWFWRKIVDDVE 363
           FLT   H                      FLPETK +PIE M + WR HW+W + V+D E
Sbjct: 444 FLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSHWYWSRFVEDGE 503

Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 148/264 (56%), Gaps = 37/264 (14%)

Query: 128 KNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAILIPFFQHVT 187
           K RGA N+  +       + A       +K++  W   +  KYR   +    IPFFQ +T
Sbjct: 245 KIRGADNVDHEFQDLIDAVEA------AKKVENPWKNIMESKYRPALIFCSAIPFFQQIT 298

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVI FYAPVLF+T+   +  +L MSA++TG +  +ST +S+   DR GR++LFL GGI
Sbjct: 299 GINVIMFYAPVLFKTLGFGDDAAL-MSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGI 357

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSI--GYAYLILVLICVYKAGFAFSWGPLRWLVPSENF 305
           QM + ++++GS +  + G  G  ++    A  IL  ICVY AGFA+SWGPL WLVPSE  
Sbjct: 358 QMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEIC 417

Query: 306 PLEIISAGQIITVAAGVFF----------------------------FLTTFMHFFLPET 337
           PLEI  AGQ I V+  +FF                             +T F++F LPET
Sbjct: 418 PLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPET 477

Query: 338 KNVPIELMDKCWREHWFWRKIVDD 361
           K VPIE M + W++HWFW+K + +
Sbjct: 478 KGVPIEEMGRVWKQHWFWKKYIPE 501

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 137/223 (61%), Gaps = 31/223 (13%)

Query: 169 KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSL 228
           KYR   V    IPFFQ +T INVI FYAPVLF+T+  ++  SL+ SA++TG++  +ST +
Sbjct: 281 KYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLV 339

Query: 229 SMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI--GYAYLILVLICVYK 286
           S+   DR GR++LFL GGIQM+VS++++G+++  + G  G  ++    A  IL  IC+Y 
Sbjct: 340 SIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYV 399

Query: 287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFF---------------------- 324
           AGFA+SWGPL WLVPSE  PLEI  AGQ I V+  +FF                      
Sbjct: 400 AGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYF 459

Query: 325 ------FLTTFMHFFLPETKNVPIELMDKCWREHWFWRKIVDD 361
                  +T F++F LPETK VPIE M + W++H FW++ + D
Sbjct: 460 FGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHPFWKRYMPD 502

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
147816021	508	hypothetical protein VITISV_025873 [Viti	0.964	0.692	0.484	2e-96
225466031	508	PREDICTED: hexose carrier protein HEX6 [	0.964	0.692	0.484	2e-96
47078687	508	putative hexose transporter [Vitis vinif	0.964	0.692	0.484	3e-96
255539853	510	sugar transporter, putative [Ricinus com	0.969	0.694	0.484	1e-95
1708191	510	RecName: Full=Hexose carrier protein HEX	0.969	0.694	0.481	2e-95
357455797	510	Hexose carrier protein HEX6 [Medicago tr	0.975	0.698	0.471	3e-94
356515367	510	PREDICTED: hexose carrier protein HEX6-l	0.975	0.698	0.469	7e-94
356517750	501	PREDICTED: hexose carrier protein HEX6-l	0.967	0.704	0.479	4e-92
224139190	509	predicted protein [Populus trichocarpa]	0.980	0.703	0.482	5e-88
115478258	511	Os09g0268300 [Oryza sativa Japonica Grou	0.950	0.679	0.448	6e-83

>gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 213/440 (48%), Positives = 271/440 (61%), Gaps = 88/440 (20%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MKEDT ISNY KFDSQLLT+FTSSLYIAGL+AS  AS +T+ FGRK +IL    AFL GS
Sbjct: 64  MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD------LLNNFQLVLICWL 114
           AL GAAFN+YM+I GR+LLGVG+GFANQ      Y S+         + N FQ  +   +
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVP--LYLSEMAPPRYRGAINNGFQFSI--GV 179

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLL-------------------NYGT 155
            ++   L      K +G +  G++V +A A + A++L                   +YG 
Sbjct: 180 GALSANLINFGTEKIKGGW--GWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237

Query: 156 -----QKIKVGWGWRISL-----------------------KYRLQFVMAILIPFFQHVT 187
                Q+++     +  L                       KYR Q VMAI IPFFQ VT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVI+FYAPVLFR I L  S SLL SA+VTG +G  ST +SM++ D+LGR+VLFLVGGI
Sbjct: 298 GINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGI 356

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL 307
           QMLVS++M+G I+A ++GDHGG S  YA+L+L+LICVY AGF +SWGPL WLVPSE FPL
Sbjct: 357 QMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPL 416

Query: 308 EIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETKN 339
           EI SAGQ ITVA                     +G+FFF       +T F+++ LPETK+
Sbjct: 417 EIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKS 476

Query: 340 VPIELMDKCWREHWFWRKIV 359
           +PIE MD+ W+EHWFW++IV
Sbjct: 477 IPIEQMDRVWKEHWFWKRIV 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 213/440 (48%), Positives = 271/440 (61%), Gaps = 88/440 (20%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MKEDT ISNY KFDSQLLT+FTSSLYIAGL+AS  AS +T+ FGRK +IL    AFL GS
Sbjct: 64  MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD------LLNNFQLVLICWL 114
           AL GAAFN+YM+I GR+LLGVG+GFANQ      Y S+         + N FQ  +   +
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVP--LYLSEMAPPRYRGAINNGFQFSI--GV 179

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLL-------------------NYGT 155
            ++   L      K +G +  G++V +A A + A++L                   +YG 
Sbjct: 180 GALSANLINFGTEKIKGGW--GWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237

Query: 156 -----QKIKVGWGWRISL-----------------------KYRLQFVMAILIPFFQHVT 187
                Q+++     +  L                       KYR Q VMAI IPFFQ VT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVI+FYAPVLFR I L  S SLL SA+VTG +G  ST +SM++ D+LGR+VLFLVGGI
Sbjct: 298 GINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGI 356

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL 307
           QMLVS++M+G I+A ++GDHGG S  YA+L+L+LICVY AGF +SWGPL WLVPSE FPL
Sbjct: 357 QMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPL 416

Query: 308 EIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETKN 339
           EI SAGQ ITVA                     +G+FFF       +T F+++ LPETK+
Sbjct: 417 EIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKS 476

Query: 340 VPIELMDKCWREHWFWRKIV 359
           +PIE MD+ W+EHWFW++IV
Sbjct: 477 IPIEQMDRVWKEHWFWKRIV 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 213/440 (48%), Positives = 271/440 (61%), Gaps = 88/440 (20%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MKEDT ISNY KFDSQLLT+FTSSLYIAGL+AS  AS +T+ FGRK +IL    AFL GS
Sbjct: 64  MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD------LLNNFQLVLICWL 114
           AL GAAFN+YM+I GR+LLGVG+GFANQ      Y S+         + N FQ  +   +
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVP--LYLSEMAPPRYRGAINNGFQFSI--GV 179

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLL-------------------NYGT 155
            ++   L      K +G +  G++V +A A + A++L                   +YG 
Sbjct: 180 GALSANLINFGTEKIKGGW--GWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGK 237

Query: 156 -----QKIKVGWGWRISL-----------------------KYRLQFVMAILIPFFQHVT 187
                Q+++     +  L                       KYR Q VMAI IPFFQ VT
Sbjct: 238 AELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVT 297

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVI+FYAPVLFR I L  S SLL SA+VTG +G  ST +SM++ D+LGR+VLFLVGGI
Sbjct: 298 GINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGI 356

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL 307
           QMLVS++M+G I+A ++GDHGG S  YA+L+L+LICVY AGF +SWGPL WLVPSE FPL
Sbjct: 357 QMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPL 416

Query: 308 EIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETKN 339
           EI SAGQ ITVA                     +G+FFF       +T F+++ LPETK+
Sbjct: 417 EIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKS 476

Query: 340 VPIELMDKCWREHWFWRKIV 359
           +PIE MD+ W+EHWFW++IV
Sbjct: 477 IPIEQMDRVWKEHWFWKRIV 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 214/442 (48%), Positives = 271/442 (61%), Gaps = 88/442 (19%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MKEDT ISNY KFDSQLLT+FTSSLY+AGL+AS FASSVTRAFGRK SIL+    FLAG+
Sbjct: 64  MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGAVFLAGA 123

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD------LLNNFQLVLICWL 114
           AL GAA N+YMLIFGRVLLGVG+GFANQ      Y S+         + N FQ  +   +
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVP--LYLSEMAPPRYRGAINNGFQFSV--GI 179

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGT------------------- 155
            ++   L      K  G +  G+++ +A A + A +L +G                    
Sbjct: 180 GALSANLINYGTEKIEGGW--GWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237

Query: 156 -----QKIKVGWGWRISL-----------------------KYRLQFVMAILIPFFQHVT 187
                Q+++     +  L                       KYR Q VMA+ IPFFQ VT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVI+FYAP+LFRTI L ES SLL S+IVTG +G+ ST +SM++ D+LGR+ LF+ GG+
Sbjct: 298 GINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGV 356

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL 307
           QM V+++M+GSIMA ++GDHGG   GYAY++L+LIC+Y AGF +SWGPL WLVPSE FPL
Sbjct: 357 QMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPL 416

Query: 308 EIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETKN 339
           EI SAGQ I VA                     +G+FFF       +T F+HF LPETK 
Sbjct: 417 EIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKK 476

Query: 340 VPIELMDKCWREHWFWRKIVDD 361
           VPIE MD  WR+HWFW+KI+ +
Sbjct: 477 VPIEKMDIVWRDHWFWKKIIGE 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis]

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 213/442 (48%), Positives = 270/442 (61%), Gaps = 88/442 (19%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MKEDT ISNY KFDSQLLT+FTSSLY+AGL+AS FASSVTRAFGRK SIL+    FLA +
Sbjct: 64  MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXA 123

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD------LLNNFQLVLICWL 114
           AL GAA N+YMLIFGRVLLGVG+GFANQ      Y S+         + N FQ  +   +
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVP--LYLSEMAPPRYRGAINNGFQFSV--GI 179

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGT------------------- 155
            ++   L      K  G +  G+++ +A A + A +L +G                    
Sbjct: 180 GALSANLINYGTEKIEGGW--GWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHER 237

Query: 156 -----QKIKVGWGWRISL-----------------------KYRLQFVMAILIPFFQHVT 187
                Q+++     +  L                       KYR Q VMA+ IPFFQ VT
Sbjct: 238 AKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVT 297

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVI+FYAP+LFRTI L ES SLL S+IVTG +G+ ST +SM++ D+LGR+ LF+ GG+
Sbjct: 298 GINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGV 356

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL 307
           QM V+++M+GSIMA ++GDHGG   GYAY++L+LIC+Y AGF +SWGPL WLVPSE FPL
Sbjct: 357 QMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPL 416

Query: 308 EIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETKN 339
           EI SAGQ I VA                     +G+FFF       +T F+HF LPETK 
Sbjct: 417 EIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKK 476

Query: 340 VPIELMDKCWREHWFWRKIVDD 361
           VPIE MD  WR+HWFW+KI+ +
Sbjct: 477 VPIEKMDIVWRDHWFWKKIIGE 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455797|ref|XP_003598179.1| Hexose carrier protein HEX6 [Medicago truncatula] gi|355487227|gb|AES68430.1| Hexose carrier protein HEX6 [Medicago truncatula]

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 210/445 (47%), Positives = 265/445 (59%), Gaps = 89/445 (20%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MK D  +SNY  FDSQLLT+FTSSLY+AG + S FAS VTR FGRK SI+    AFLAG+
Sbjct: 65  MKSDDKVSNYCMFDSQLLTSFTSSLYVAGFVTSFFASYVTRVFGRKPSIVAGGAAFLAGT 124

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTC------DLLNNFQLVLICWL 114
           AL GAAFN+YMLI GR+LLGVG+GFANQ      Y S+         + N FQL +   +
Sbjct: 125 ALGGAAFNVYMLIVGRLLLGVGVGFANQAVP--LYLSEMALPRFRGAINNGFQLSI--GI 180

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGT-----------------QK 157
            ++   L      K  G +  G++V +A A + A+ L  G                  QK
Sbjct: 181 GALSANLINYGTEKIEGGW--GWRVSLAMAAVPASFLTLGALFLPETPNSLIQTTQDHQK 238

Query: 158 IK-----------------------------VGWGWRISLK--YRLQFVMAILIPFFQHV 186
            K                                 ++I +K  YR Q VMAI IPFFQ V
Sbjct: 239 AKRILQRIRGIEDVEAELDDLTKASSTSKTSSQQPFKIIMKRRYRPQLVMAIAIPFFQQV 298

Query: 187 TRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGG 246
           T INVI+FYAP+LFRTI L ES SLL S+++TG +GT ST +SM + D+LGR+ LF+VGG
Sbjct: 299 TGINVIAFYAPLLFRTIGLGESASLL-SSVMTGIVGTGSTFISMFIVDKLGRRTLFIVGG 357

Query: 247 IQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFP 306
           IQM VS+ ++G IMA  + DHGG S GYAY++L++IC+Y AGF +SWGPL WLVPSE FP
Sbjct: 358 IQMFVSQCIVGGIMAVHLKDHGGLSKGYAYMVLIMICIYVAGFGWSWGPLGWLVPSEIFP 417

Query: 307 LEIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETK 338
           LEI SAGQ ITVA                     +G+FFF       +T F++ FLPETK
Sbjct: 418 LEIRSAGQSITVAVSFLFTFIVAQTFLSMLCHFKSGIFFFFGGWVVVMTVFVYCFLPETK 477

Query: 339 NVPIELMDKCWREHWFWRKIVDDVE 363
           NVP+E M+K W+EHWFW+KIV  + 
Sbjct: 478 NVPLEQMEKVWQEHWFWKKIVGKIS 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 208/443 (46%), Positives = 271/443 (61%), Gaps = 87/443 (19%)

Query: 4   DTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALR 63
           D  +SNY  FDSQLLT+FTSSLY+AGL+ S FAS +T+AFGRK SI+V   AFLAG+ L 
Sbjct: 68  DDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYITKAFGRKPSIVVGGAAFLAGTGLG 127

Query: 64  GAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLL-----NNFQLVLICWLQSVP 118
           GAAFN+YMLI GR+LLGVG+GFANQ +V L+        L     N FQL +   + ++ 
Sbjct: 128 GAAFNVYMLIVGRLLLGVGVGFANQ-AVPLYLSEMALPRLRGAINNGFQLSI--GIGALS 184

Query: 119 LYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGT-----------------QKIKV- 160
             L      K  G +  G+++ +A A + A++L  G                  QK K+ 
Sbjct: 185 ANLINYGTEKIEGGW--GWRMSLAMAAVPASVLTLGALFLPETPNSVIQRSHDKQKAKLM 242

Query: 161 ------------------------GWGWRISLK------YRLQFVMAILIPFFQHVTRIN 190
                                       + SLK      YR Q VMA+ IPFFQ VT IN
Sbjct: 243 LQRIRGMEDVQAELDDLIKASSPSKTNNKQSLKLILKGRYRPQLVMALAIPFFQQVTGIN 302

Query: 191 VISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQML 250
           VI+FYAP+LFRTI L ES SLL SA++TG +GT ST +SM + D+LGR+ LF++GGIQM 
Sbjct: 303 VIAFYAPLLFRTIGLGESASLL-SAVMTGVVGTGSTFISMFVVDKLGRRTLFMIGGIQMF 361

Query: 251 VSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEII 310
           VS+ ++G IMA  + DHGG S GYA+++LV+IC+Y AGF +SWGPL WLVPSE FPLEI 
Sbjct: 362 VSQCIVGGIMALHLKDHGGLSKGYAFVVLVMICIYVAGFGWSWGPLGWLVPSEIFPLEIR 421

Query: 311 SAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETKNVPI 342
           SAGQ ITVA                     +G+FFF       +TTF+++FLPETK+VP+
Sbjct: 422 SAGQSITVAVSFIFTFIVAQTFLSMLCHFRSGIFFFFGGWVVVMTTFVYYFLPETKSVPL 481

Query: 343 ELMDKCWREHWFWRKIVDDVERK 365
           E M+K W+EHWFW++IV +V  +
Sbjct: 482 EQMEKVWQEHWFWKRIVGEVSDR 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 211/440 (47%), Positives = 256/440 (58%), Gaps = 87/440 (19%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MK+DT +SNY KFDSQLLT FTSSLYIAGLIAS FASSVTRAFGRK SIL+   AFL G+
Sbjct: 64  MKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGAAFLIGA 123

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD------LLNNFQLVLICWL 114
           AL GAA NIYMLI GRV+L  G+G          Y S+         +   FQL +   +
Sbjct: 124 ALGGAALNIYMLILGRVML--GVGIGFANQSAPLYLSEMAPPRYRGAINTGFQLCVGIGV 181

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGT-----------------QK 157
            S  L        K +  +  G+++ +  A + A++L +G+                 QK
Sbjct: 182 LSANLV--NFGTEKIKAGW--GWRISLVMAAVPASMLTFGSLFLPETPNSIIQHDKNHQK 237

Query: 158 ------------------------------IKVGWGWRISLKYRLQFVMAILIPFFQHVT 187
                                         IK  +   +  KYR Q VMAI IPFFQ  T
Sbjct: 238 AKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQLVMAIAIPFFQQFT 297

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVISFYAP+LF TI L ES SLL+SA+VTG +GT ST +SM++ DRLGR+VLF+ GGI
Sbjct: 298 GINVISFYAPILFLTIGLGESASLLLSAVVTGFVGTASTFISMLMVDRLGRRVLFISGGI 357

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL 307
           QM  S+V+IGSIMA Q+GDHG     YAYLILVLIC+Y AGFA+SWGPL WLVPSE F L
Sbjct: 358 QMFFSQVLIGSIMATQLGDHGEIDKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFQL 417

Query: 308 EIISAGQIITVAAGVFF----------------------------FLTTFMHFFLPETKN 339
           EI SA Q ITVA   FF                             +T F++  LPET+N
Sbjct: 418 EIRSAAQSITVAVNFFFTFIVAQTFLIMLCHFKFGTFFFFGGWVVVMTAFVYLLLPETRN 477

Query: 340 VPIELMDKCWREHWFWRKIV 359
           VPIE MD+ WREH+FW++IV
Sbjct: 478 VPIEQMDRVWREHFFWKRIV 497

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 215/446 (48%), Positives = 276/446 (61%), Gaps = 88/446 (19%)

Query: 1   MKEDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS 60
           MKEDT ISNY KFDSQLLT+FTSS+Y+AG IAS FASS+T+AFGRK SIL+   AFLAG+
Sbjct: 65  MKEDTEISNYCKFDSQLLTSFTSSMYVAGFIASFFASSITKAFGRKPSILLGGAAFLAGA 124

Query: 61  ALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD------LLNNFQLVLICWL 114
           AL GAAFN+YMLIFGRVLLGVG+GFANQ      Y S+         + N FQ  +   +
Sbjct: 125 ALGGAAFNVYMLIFGRVLLGVGVGFANQAVP--LYLSEMAPPRYRGAINNGFQFSI--GI 180

Query: 115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYG-------------------- 154
            ++   L      K +G +  G+++ +A A + A +L  G                    
Sbjct: 181 GALSANLINYGTEKIKGGW--GWRISLALAAVPATILTLGAVFLPETPNSLIQLTDDTER 238

Query: 155 ---------------------------TQKIKVGWGWRISLKYRLQFVMAILIPFFQHVT 187
                                      ++ ++  +   I  KYR Q VMAI IPFFQ VT
Sbjct: 239 AKLMLQRVRGTEDVQAELDDLIKASSISKTVEHPFKKIIKRKYRPQLVMAIAIPFFQQVT 298

Query: 188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI 247
            INVI+FYAP+LFRTI L ES SL MS++VTG +GT ST +SM++ D+LGR+ LF+ GG+
Sbjct: 299 GINVIAFYAPILFRTIGLGESASL-MSSVVTGIVGTGSTFISMLVVDKLGRRALFIFGGV 357

Query: 248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL 307
           QMLVS++M+G IMA Q+GDHGG   GYAY++L+LIC+Y AGF++SWGPL WLVPSE FPL
Sbjct: 358 QMLVSQIMVGGIMAAQLGDHGGIGGGYAYVVLILICIYVAGFSWSWGPLGWLVPSEIFPL 417

Query: 308 EIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPETKN 339
           EI SAGQ I VA                     +G+FFF       +T F+++FLPETKN
Sbjct: 418 EIRSAGQSIVVAVSFLFTFIVAQTFLAMLCHFKSGIFFFFGGWVVVMTAFVYYFLPETKN 477

Query: 340 VPIELMDKCWREHWFWRKIVDDVERK 365
            PIE MD+ WREH FW KIV +++ +
Sbjct: 478 TPIEKMDRVWREHGFWNKIVGEMDEQ 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115478258|ref|NP_001062724.1| Os09g0268300 [Oryza sativa Japonica Group] gi|49389020|dbj|BAD26263.1| putative hexose carrier protein HEX6 [Oryza sativa Japonica Group] gi|113630957|dbj|BAF24638.1| Os09g0268300 [Oryza sativa Japonica Group]

 Score =  313 bits (803), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 199/444 (44%), Positives = 251/444 (56%), Gaps = 97/444 (21%)

Query: 3   EDTNISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSAL 62
           + T++SNY KFDS+LLT FTSSLYIAGL+ +  ASSVT   GR+ S+++  +A LAGSA+
Sbjct: 67  KGTSVSNYCKFDSELLTAFTSSLYIAGLLTTFLASSVTARCGRRPSMVIAGSAILAGSAI 126

Query: 63  RGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLL------NNFQLVLICWLQS 116
            G A N+ M+I GRVLLGVG+GF NQ      Y S+    L      N FQL +   + +
Sbjct: 127 GGTAVNVSMVILGRVLLGVGLGFGNQAVP--LYLSEMAPPLHRGAFSNGFQLCV--GIGA 182

Query: 117 VPLYLSEMAPPKNRGAFNIGFQVCVATAVLSA---------------NLLNYGTQKIKVG 161
           V   L+     K R  +  G++V +A A +                 +LL  G  K +V 
Sbjct: 183 VTARLTNFFTQKIRQGW--GWRVSLAVAAVPGGLLTLGALFLPETPNSLLQQGRDKRRV- 239

Query: 162 WGWRISL-------------------------------------KYRLQFVMAILIPFFQ 184
              R+ L                                     +YR Q VMAI+IPFFQ
Sbjct: 240 ---RVLLTRIRGVSDVEDELEDIVAANSDKANSSRGLQMIVTQRQYRPQLVMAIMIPFFQ 296

Query: 185 HVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLV 244
            VT IN ISFYAPVL RTI + ES SLL S +VTG +GT ST +SM L DR GR+ LFLV
Sbjct: 297 QVTGINAISFYAPVLLRTIGMGESASLL-SVVVTGLVGTSSTFVSMFLVDRYGRRTLFLV 355

Query: 245 GGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSEN 304
           GG QMLVS++MIG IMA Q+GDHG  S   A +++ LI VY AGFA+SWGPL WLVPSE 
Sbjct: 356 GGAQMLVSQLMIGGIMATQLGDHGQVSKTCALVLIFLIAVYVAGFAWSWGPLGWLVPSEV 415

Query: 305 FPLEIISAGQIITVA---------------------AGVFFF-------LTTFMHFFLPE 336
           FPLE+ SAGQ ITVA                     AG+FFF       +T F++  LPE
Sbjct: 416 FPLEVRSAGQSITVAVNFLMTTAVAQLFLATLCRMRAGIFFFFAAWLVAMTAFVYLLLPE 475

Query: 337 TKNVPIELMDKCWREHWFWRKIVD 360
           TK +PIE + + W +HWFWR+ VD
Sbjct: 476 TKGLPIEQVRRLWAQHWFWRRFVD 499

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2092221	514	AT3G19940 [Arabidopsis thalian	0.454	0.322	0.437	7.9e-81
TAIR|locus:2011957	517	STP9 "sugar transporter 9" [Ar	0.419	0.295	0.467	1.7e-79
TAIR|locus:2132213	513	STP7 "sugar transporter protei	0.419	0.298	0.435	1.5e-78
TAIR|locus:2151596	514	AT5G61520 [Arabidopsis thalian	0.408	0.289	0.559	1e-74
TAIR|locus:2009323	506	AT1G34580 [Arabidopsis thalian	0.410	0.296	0.424	7.9e-74
TAIR|locus:2092286	514	STP4 "sugar transporter 4" [Ar	0.473	0.336	0.477	7.6e-71
TAIR|locus:2195995	504	STP14 "sugar transport protein	0.427	0.309	0.354	2.1e-68
TAIR|locus:2202044	522	STP1 "AT1G11260" [Arabidopsis	0.457	0.319	0.461	1.5e-66
TAIR|locus:2166781	514	STP11 "sugar transporter 11" [	0.454	0.322	0.455	3.9e-66
TAIR|locus:2083003	507	STP6 "sugar transporter 6" [Ar	0.413	0.297	0.394	3.5e-64

TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 7.9e-81, Sum P(4) = 7.9e-81
 Identities = 74/169 (43%), Positives = 100/169 (59%)

Query:   156 QKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSA 215
             +K++  W   +  KYR   +    IPFFQ +T INVI FYAPVLF+T+   +  +L MSA
Sbjct:   267 KKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAAL-MSA 325

Query:   216 IVXXXXXXXXXXXXXXXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI--G 273
             ++                DR GR++LFL GGIQM + ++++GS +  + G  G  ++   
Sbjct:   326 VITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPA 385

Query:   274 YAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGV 322
              A  IL  ICVY AGFA+SWGPL WLVPSE  PLEI  AGQ I V+  +
Sbjct:   386 TADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNM 434

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.7e-79, Sum P(4) = 1.7e-79
 Identities = 73/156 (46%), Positives = 98/156 (62%)

Query:   169 KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVXXXXXXXXXXX 228
             KYR   V    IPFFQ +T INVI FYAPVLF+T+  ++  SL+ SA++           
Sbjct:   281 KYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLV 339

Query:   229 XXXXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI--GYAYLILVLICVYK 286
                  DR GR++LFL GGIQM+VS++++G+++  + G  G  ++    A  IL  IC+Y 
Sbjct:   340 SIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYV 399

Query:   287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGV 322
             AGFA+SWGPL WLVPSE  PLEI  AGQ I V+  +
Sbjct:   400 AGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNM 435

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 1.5e-78, Sum P(4) = 1.5e-78
 Identities = 67/154 (43%), Positives = 95/154 (61%)

Query:   169 KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVXXXXXXXXXXX 228
             ++R Q VMAI +P FQ +T IN I FYAPVLF+T+    + SL  SA+            
Sbjct:   281 RHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFIS 340

Query:   229 XXXXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAG 288
                  DRLGR+ L + GGIQM++ +V++  I+  + GD+   S GY+ ++++ IC++   
Sbjct:   341 IGL-VDRLGRRALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVA 399

Query:   289 FAFSWGPLRWLVPSENFPLEIISAGQIITVAAGV 322
             F +SWGPL W +PSE FPLE  SAGQ ITVA  +
Sbjct:   400 FGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNL 433

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 1.0e-74, Sum P(3) = 1.0e-74
 Identities = 85/152 (55%), Positives = 103/152 (67%)

Query:   169 KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVXXXXXXXXXXX 228
             KYR + VMA++IPFFQ VT INV++FYAPVL+RT+   ES SL MS +V           
Sbjct:   284 KYRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSL-MSTLVTGIVGTSSTLL 342

Query:   229 XXXXADRLGRKVLFLVGGIQMLVSRVMIGSI-MADQIGDHGGFSIGYAYLILVLICVYKA 287
                  DR+GRK LFL+GG+QMLVS+V IG I M   + D G    GY Y ++VL+CVY A
Sbjct:   343 SMLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVVLVCVYVA 401

Query:   288 GFAFSWGPLRWLVPSENFPLEIISAGQIITVA 319
             GF +SWGPL WLVPSE FPLEI S  Q +TVA
Sbjct:   402 GFGWSWGPLGWLVPSEIFPLEIRSVAQSVTVA 433

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 7.9e-74, Sum P(4) = 7.9e-74
 Identities = 65/153 (42%), Positives = 95/153 (62%)

Query:   169 KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVXXXXXXXXXXX 228
             +YR   V+A++IP FQ +T I V +FYAPVLFR++      +L+ + I+           
Sbjct:   282 RYRPHLVVAVVIPCFQQLTGITVNAFYAPVLFRSVGFGSGPALIATFILGFVNLGSLLLS 341

Query:   229 XXXXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI--GYAYLILVLICVYK 286
                  DR GR+ LF+ GGI ML+ ++ +  ++A  +G  G   +  GYA  ++VL+C+Y 
Sbjct:   342 TMVI-DRFGRRFLFIAGGILMLLCQIAVAVLLAVTVGATGDGEMKKGYAVTVVVLLCIYA 400

Query:   287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITVA 319
             AGF +SWGPL WLVPSE FPL+I  AGQ ++VA
Sbjct:   401 AGFGWSWGPLSWLVPSEIFPLKIRPAGQSLSVA 433

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 7.6e-71, Sum P(3) = 7.6e-71
 Identities = 85/178 (47%), Positives = 112/178 (62%)

Query:   149 NLLNYGTQKIKVGWGWR-ISL-KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLS 206
             +L++   +  +V   W+ I L +YR Q +M   IPFFQ +T INVI+FYAPVLF+T+   
Sbjct:   256 DLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQTLGFG 315

Query:   207 ESTSLLMSAIVXXXXXXXXXXXXXXXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGD 266
                SLL SA+V                DR GR++LFL GGIQMLVS++ IG+++  + G 
Sbjct:   316 SKASLL-SAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVKFGV 374

Query:   267 HGGFSIGY--AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGV 322
              G  +IG   A LI+ LIC+Y AGFA+SWGPL WLVPSE  PLEI SA Q I V+  +
Sbjct:   375 AGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSVNM 432

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015770 "sucrose transport" evidence=TAS

TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.1e-68, Sum P(4) = 2.1e-68
 Identities = 56/158 (35%), Positives = 86/158 (54%)

Query:   166 ISLKYRLQFVM-AILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVXXXXXXX 224
             ++ + R Q V+ AI +P FQ +T +N I FYAPV+F+++    S SL+ S I        
Sbjct:   278 LARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVA 337

Query:   225 XXXXXXXXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICV 284
                     AD+ GR+ L L   ++M    V++G  +A + G+          +++VLIC+
Sbjct:   338 AIMSMYS-ADKFGRRFLLLEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICL 396

Query:   285 YKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGV 322
             +   +  SWGP+ WLVPSE FPLE  SAGQ + V   +
Sbjct:   397 FVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNL 434

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IGI

TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
 Identities = 79/171 (46%), Positives = 102/171 (59%)

Query:   155 TQKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMS 214
             +Q I+  W   +  KYR    MA++IPFFQ +T INVI FYAPVLF TI  +   SL MS
Sbjct:   265 SQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASL-MS 323

Query:   215 AIVXXXXXXXXXXXXXXXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG--G-FS 271
             A+V                DR GR+ LFL GG QML+ + ++ + +  + G  G  G   
Sbjct:   324 AVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELP 383

Query:   272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGV 322
               YA +++  IC+Y AGFA+SWGPL WLVPSE FPLEI SA Q ITV+  +
Sbjct:   384 KWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNM 434

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 3.9e-66, Sum P(3) = 3.9e-66
 Identities = 77/169 (45%), Positives = 103/169 (60%)

Query:   156 QKIKVGWGWRISLKYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSA 215
             +K+K  W   +  +YR Q      IPFFQ +T INVI FYAPVLF+TI      SL+ SA
Sbjct:   268 KKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLI-SA 326

Query:   216 IVXXXXXXXXXXXXXXXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG-GFSIGY 274
             ++                D+ GR+ LFL GG QM+V+++ +GS++  + G +G G   G 
Sbjct:   327 VITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGV 386

Query:   275 -AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGV 322
              A +IL LIC+Y AGFA+SWGPL WLVPSE  PLEI SAGQ + V+  +
Sbjct:   387 DADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVNM 435

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 3.5e-64, Sum P(4) = 3.5e-64
 Identities = 60/152 (39%), Positives = 87/152 (57%)

Query:   171 RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVXXXXXXXXXXXXX 230
             R  F++ +L+  FQ  T IN I FYAPVLF+T+      +LL SA++             
Sbjct:   277 RPPFIIGMLLQLFQQFTGINAIMFYAPVLFQTVGFGSDAALL-SAVITGSINVLATFVGI 335

Query:   231 XXADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFA 290
                DR GR+ L L   + ML+ +++IG I+A  +G  G      A ++++ +CVY  GFA
Sbjct:   336 YLVDRTGRRFLLLQSSVHMLICQLIIGIILAKDLGVTGTLGRPQALVVVIFVCVYVMGFA 395

Query:   291 FSWGPLRWLVPSENFPLEIISAGQIITVAAGV 322
             +SWGPL WL+PSE FPLE  SAG  + V+  +
Sbjct:   396 WSWGPLGWLIPSETFPLETRSAGFAVAVSCNM 427

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0034219 "carbohydrate transmembrane transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-32
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-22
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-19
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	5e-17
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-07
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	0.001

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  126 bits (319), Expect = 1e-32
 Identities = 99/420 (23%), Positives = 164/420 (39%), Gaps = 89/420 (21%)

Query: 9   NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA--- 65
           N   + S L     S   + G I +LFA  ++  FGRK S+L+ +  F+ G+ L G    
Sbjct: 64  NSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF 123

Query: 66  AFNIYMLIFGRVLLGVGIGFANQVSV----------------------WLF-----YFSQ 98
           A ++ MLI GRVLLG+G+G A+ +                          F     Y   
Sbjct: 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183

Query: 99  TCDLLNN-----------------FQLVLICWLQSVPLYLSEMAP--------PKNRGAF 133
           +  +  N                    + + +L   P +L              + RG  
Sbjct: 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS 243

Query: 134 NIGFQVCVATAVLSANLLNYGTQKIKVGWG-WRISLKYRLQFVMAILIPFFQHVTRINVI 192
               ++     ++                  +  + + R +  + +++ +FQ  T IN I
Sbjct: 244 GEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAI 303

Query: 193 SFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVS 252
            +Y+P +F    +S   + L+S I+ G++    T +++ L DR GR+ L L+G   M + 
Sbjct: 304 MYYSPTIFENAGVSTDHAFLVS-IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC 362

Query: 253 RVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISA 312
             ++G + A       G S     + +V I ++ A FA  WGP+ W++ SE FPL +   
Sbjct: 363 LFVLGILGA---SFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK 419

Query: 313 GQIITVAA---------------------GVFFFL--------TTFMHFFLPETKNVPIE 343
           G  I VAA                     G  F            F++FFLPETK   +E
Sbjct: 420 GISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 37/225 (16%)

Query: 151 LNYGTQKIKVGWGWRISLK-YRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSEST 209
           L    +  K  W      K  R + +M +++  FQ +T IN I +Y+P +F T+ LS+S 
Sbjct: 230 LERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL 289

Query: 210 SLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG 269
              +  I+ G +  + T +++ L DR GR+ L L+G   M +  +++G      +G    
Sbjct: 290 ---LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLG---VALLGVAK- 342

Query: 270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAAGVFF----- 324
            S G   + +V I ++ A FA  WGP+ W++ SE FPL +      I  AA         
Sbjct: 343 -SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIG 401

Query: 325 FLTTFMH-----------------------FFLPETKNVPIELMD 346
           FL   +                        FF+PETK   +E +D
Sbjct: 402 FLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446

Length = 449

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 31/168 (18%)

Query: 14  DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA--FNIYM 71
            + L     S   +  LI SLFA  +   FGRK S+L+ +  F+ G+ L+G A   + YM
Sbjct: 44  STVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYM 103

Query: 72  LIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRG 131
           LI GRV++G+G+G  + +                           VP+Y+SE+AP K RG
Sbjct: 104 LIVGRVIVGLGVGGISVL---------------------------VPMYISEIAPKKLRG 136

Query: 132 AFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISLKYRLQFVMAIL 179
           A    +Q+ +   +L A ++  G  K     GWRI L   LQFV AIL
Sbjct: 137 ALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLG--LQFVPAIL 182

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 81.7 bits (202), Expect = 5e-17
 Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 45/212 (21%)

Query: 175 VMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILAD 234
           V+ +++  FQ    INV+ +YAP +F+T+  S   +L +  I+ G +    T L+++  D
Sbjct: 273 VIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVD 331

Query: 235 RLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWG 294
           + GRK L ++G + M +   M     A      G        + L+ +  Y A FA SWG
Sbjct: 332 KFGRKPLQIIGALGMAIG--MFSLGTAFYTQAPG-------IVALLSMLFYVAAFAMSWG 382

Query: 295 PLRWLVPSENFPLEIISAGQIITVAA---------------------------------- 320
           P+ W++ SE FP  I      I VAA                                  
Sbjct: 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 442

Query: 321 GVFFFLTT-FMHFFLPETKNVPIELMDKCWRE 351
           G    L   FM  F+PETK   +E M+  W  
Sbjct: 443 GCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 61/335 (18%), Positives = 118/335 (35%), Gaps = 50/335 (14%)

Query: 7   ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA 66
           ++      +       S+  +   + SL A  ++  FGR+  +L+    F  GS L   A
Sbjct: 25  LAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84

Query: 67  FNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP 126
            ++++L+ GR LLG+G G     +                              ++E  P
Sbjct: 85  SSLWLLLVGRFLLGLGGGALYPAA---------------------------AALIAEWFP 117

Query: 127 PKNRGAFNIGFQVCVATAVLSANLLNYG-TQKIKVGWGWRIS----------LKYRLQFV 175
           PK RG     F        L   LL     + +   W + I           L + L+ +
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLL 177

Query: 176 MAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADR 235
           + + + FF        +  Y P+  + +    +    +   + G  G +   L  +L+DR
Sbjct: 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR 237

Query: 236 LGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGP 295
           LGR+ L L+ G+ +    +++ ++                 L+LV + +   G  F++  
Sbjct: 238 LGRRRLLLLIGLLLAALGLLLLAL------------APSLALLLVALLLLGFGLGFAFPA 285

Query: 296 LRWLVPSENFPLEIISAGQIITVAAGVFFFLTTFM 330
           L  L      P    +A  +      +   L   +
Sbjct: 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLL 320

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 51/254 (20%), Positives = 86/254 (33%), Gaps = 58/254 (22%)

Query: 119 LYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYG-----TQKIKVGWGWRIS------ 167
           LYL+E APP  RG +    QV     +L A L              + WGWRI       
Sbjct: 119 LYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAV 178

Query: 168 ------------------------------------LKYRLQFVMAILIPFFQHVTRINV 191
                                                K+R  F++ + +      T   +
Sbjct: 179 LVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHRKPFLLGLGLVIATTTTFYLI 238

Query: 192 ISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLV 251
            ++    L +T+ LS +++LL+  +       I+  LS  L+DR+GR+ + ++  +   +
Sbjct: 239 TTYLPTYLTQTLGLSANSALLVLMLSLILFF-ITIPLSGALSDRIGRRPVLIIFTVLAAL 297

Query: 252 SRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIIS 311
             V +   + D          G   L   L+           GP+   +P E FP E+  
Sbjct: 298 LAVPLLMALLDS---------GSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRY 347

Query: 312 AGQIITVAAGVFFF 325
            G  +        F
Sbjct: 348 TGASLAYNLAGAIF 361

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.95
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.95
PRK09705	393	cynX putative cyanate transporter; Provisional	99.95
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.94
PRK12307	426	putative sialic acid transporter; Provisional	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
TIGR00898	505	2A0119 cation transport protein.	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK09952	438	shikimate transporter; Provisional	99.94
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
PRK15075	434	citrate-proton symporter; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.93
PRK05122	399	major facilitator superfamily transporter; Provisi	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK03893	496	putative sialic acid transporter; Provisional	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.92
PRK11663	434	regulatory protein UhpC; Provisional	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.91
PRK10489	417	enterobactin exporter EntS; Provisional	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
PRK10504	471	putative transporter; Provisional	99.91
PRK12382	392	putative transporter; Provisional	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
PRK03699	394	putative transporter; Provisional	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.9
PLN00028	476	nitrate transmembrane transporter; Provisional	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.9
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.9
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.9
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.9
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.9
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.89
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.89
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.89
PRK03633	381	putative MFS family transporter protein; Provision	99.89
PRK11043	401	putative transporter; Provisional	99.89
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.89
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.88
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.87
TIGR00901	356	2A0125 AmpG-related permease.	99.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
PRK09874	408	drug efflux system protein MdtG; Provisional	99.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.86
PRK15011	393	sugar efflux transporter B; Provisional	99.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.85
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.85
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.85
KOG2533	495	consensus Permease of the major facilitator superf	99.84
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.83
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.83
PRK10054	395	putative transporter; Provisional	99.82
PRK11010	491	ampG muropeptide transporter; Validated	99.81
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.8
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.8
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.79
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.78
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.78
PRK11902	402	ampG muropeptide transporter; Reviewed	99.78
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.77
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.76
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.75
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.75
TIGR00805	633	oat sodium-independent organic anion transporter.	99.74
KOG2615	451	consensus Permease of the major facilitator superf	99.73
PRK09528	420	lacY galactoside permease; Reviewed	99.72
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.7
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.69
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.66
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.65
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.63
PRK10429	473	melibiose:sodium symporter; Provisional	99.61
PRK09669	444	putative symporter YagG; Provisional	99.6
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.6
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.59
PTZ00207	591	hypothetical protein; Provisional	99.59
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.58
PF13347	428	MFS_2: MFS/sugar transport protein	99.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.54
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.54
PRK11462	460	putative transporter; Provisional	99.51
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.5
PRK09848	448	glucuronide transporter; Provisional	99.49
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.46
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.44
COG2211	467	MelB Na+/melibiose symporter and related transport	99.41
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.29
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.29
KOG2563	480	consensus Permease of the major facilitator superf	99.24
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.19
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.16
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.11
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.08
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.05
TIGR00891	405	2A0112 putative sialic acid transporter.	99.02
PRK15011	393	sugar efflux transporter B; Provisional	99.0
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.99
PRK11663	434	regulatory protein UhpC; Provisional	98.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.96
TIGR00895	398	2A0115 benzoate transport.	98.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.96
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.95
PRK09528	420	lacY galactoside permease; Reviewed	98.95
TIGR00893	399	2A0114 d-galactonate transporter.	98.95
PRK10054	395	putative transporter; Provisional	98.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.91
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.89
PRK12307	426	putative sialic acid transporter; Provisional	98.88
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.87
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.87
PRK12382	392	putative transporter; Provisional	98.86
PRK09874	408	drug efflux system protein MdtG; Provisional	98.85
PRK05122	399	major facilitator superfamily transporter; Provisi	98.85
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.84
TIGR00900	365	2A0121 H+ Antiporter protein.	98.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.81
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.81
PRK10091	382	MFS transport protein AraJ; Provisional	98.77
PRK03893	496	putative sialic acid transporter; Provisional	98.77
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.77
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.76
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.76
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.76
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.75
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.75
PRK03699	394	putative transporter; Provisional	98.75
PRK03633	381	putative MFS family transporter protein; Provision	98.75
PRK03545	390	putative arabinose transporter; Provisional	98.74
PRK10642	490	proline/glycine betaine transporter; Provisional	98.73
PRK10489	417	enterobactin exporter EntS; Provisional	98.72
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.72
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.72
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.71
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.69
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.69
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.69
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.67
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.65
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.65
PRK10504	471	putative transporter; Provisional	98.63
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.63
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.62
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.61
PRK09952	438	shikimate transporter; Provisional	98.59
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.59
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.58
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.57
PLN00028	476	nitrate transmembrane transporter; Provisional	98.57
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.57
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.57
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.56
TIGR00901	356	2A0125 AmpG-related permease.	98.56
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.54
KOG3626	735	consensus Organic anion transporter [Secondary met	98.53
TIGR00898	505	2A0119 cation transport protein.	98.52
PRK11043	401	putative transporter; Provisional	98.52
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.51
COG0477	338	ProP Permeases of the major facilitator superfamil	98.48
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.48
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.46
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.44
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.44
PRK15075	434	citrate-proton symporter; Provisional	98.43
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.42
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.41
PRK09705	393	cynX putative cyanate transporter; Provisional	98.4
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.4
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.4
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.4
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.38
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.37
PRK11902	402	ampG muropeptide transporter; Reviewed	98.35
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.34
PRK11010	491	ampG muropeptide transporter; Validated	98.34
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.34
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.33
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.33
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.32
KOG0569	485	consensus Permease of the major facilitator superf	98.31
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.27
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.25
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.25
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.23
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.22
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.22
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.21
PRK10133	438	L-fucose transporter; Provisional	98.2
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.19
PTZ00207	591	hypothetical protein; Provisional	98.12
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.12
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.12
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.11
KOG2615	451	consensus Permease of the major facilitator superf	98.11
TIGR00805	633	oat sodium-independent organic anion transporter.	98.09
PRK09848	448	glucuronide transporter; Provisional	98.08
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.05
PF13347	428	MFS_2: MFS/sugar transport protein	98.04
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.0
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.99
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.97
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.94
KOG3762	618	consensus Predicted transporter [General function	97.92
KOG0254	513	consensus Predicted transporter (major facilitator	97.91
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.89
PRK09669	444	putative symporter YagG; Provisional	97.86
PRK10429	473	melibiose:sodium symporter; Provisional	97.82
KOG2532	466	consensus Permease of the major facilitator superf	97.81
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.78
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.77
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.74
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.72
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.72
PF12832	77	MFS_1_like: MFS_1 like family	97.7
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.68
KOG0637	498	consensus Sucrose transporter and related proteins	97.6
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.5
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.46
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.43
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.39
KOG3762	618	consensus Predicted transporter [General function	97.25
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.21
KOG2533	495	consensus Permease of the major facilitator superf	97.2
PF12832	77	MFS_1_like: MFS_1 like family	97.17
COG2211	467	MelB Na+/melibiose symporter and related transport	97.17
PRK11462	460	putative transporter; Provisional	97.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.05
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.05
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.98
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.97
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.82
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.79
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.68
KOG3810	433	consensus Micronutrient transporters (folate trans	96.54
KOG2563	480	consensus Permease of the major facilitator superf	95.9
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.3
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.85
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.81
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.91
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.45
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	92.71
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	92.63
COG0477	338	ProP Permeases of the major facilitator superfamil	92.56
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.42
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.26
KOG3626	735	consensus Organic anion transporter [Secondary met	91.88
KOG0637	498	consensus Sucrose transporter and related proteins	91.82
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	91.25
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	90.95
KOG3098	461	consensus Uncharacterized conserved protein [Funct	87.66
PRK03612	521	spermidine synthase; Provisional	87.45
KOG3097	390	consensus Predicted membrane protein [Function unk	87.33
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	83.75
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.87
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	82.69

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.3e-33  Score=273.70  Aligned_cols=303  Identities=27%  Similarity=0.450  Sum_probs=264.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhhcchhhhhhhhhhh
Q 017823           17 LLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA---FNIYMLIFGRVLLGVGIGFANQVSVWL   93 (365)
Q Consensus        17 ~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a---~~~~~~~~~r~l~G~~~g~~~~~~~~~   93 (365)
                      ..+.+.+++.+|.++|+++.+.++||+|||..+.++.++..++.++..++   +++.+++++|++.|+..|....     
T Consensus        61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~-----  135 (485)
T KOG0569|consen   61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTG-----  135 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHH-----
Confidence            46677779999999999999999999999999999999998888887776   7889999999999999999999     


Q ss_pred             hhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH-----
Q 017823           94 FYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL-----  168 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f-----  168 (365)
                                            ..+.|+.|.+|++.||......+.+..+|.+++..++..-.-. +...|++.+     
T Consensus       136 ----------------------~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilG-t~~~W~~l~~~~~i  192 (485)
T KOG0569|consen  136 ----------------------LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLG-TEDLWPYLLAFPLI  192 (485)
T ss_pred             ----------------------HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcC-CCcchHHHHHHHHH
Confidence                                  9999999999999999999999999999999998887544322 224688877     


Q ss_pred             -------------------------------------------------------------------------HhHHHHH
Q 017823          169 -------------------------------------------------------------------------KYRLQFV  175 (365)
Q Consensus       169 -------------------------------------------------------------------------~~~~~~~  175 (365)
                                                                                               ..|++..
T Consensus       193 ~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~  272 (485)
T KOG0569|consen  193 PALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLL  272 (485)
T ss_pred             HHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHH
Confidence                                                                                     4567788


Q ss_pred             HHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHH
Q 017823          176 MAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVM  255 (365)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~  255 (365)
                      ..+.+.+.+++++.+.+.+|...++++.|++++++. +.....++...+.++++.++.||.|||++++.+..++.+..+.
T Consensus       273 i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~-~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~  351 (485)
T KOG0569|consen  273 IGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ-YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL  351 (485)
T ss_pred             HHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999999999999 9999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH---------------
Q 017823          256 IGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA---------------  320 (365)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~---------------  320 (365)
                      +......+....    +.-.+..+++.+.+..+++.+.+|++|.+.+|++|++.|++++++...+               
T Consensus       352 ~~~~~~l~~~~~----~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l  427 (485)
T KOG0569|consen  352 MSIALFLSNSFG----SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL  427 (485)
T ss_pred             HHHHHHHHHHhh----hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888755432111    2334567888999999999999999999999999999999999999888               


Q ss_pred             ----H--HHH---H----HHHHHHhhcccCCCCChHHHHHHHccC
Q 017823          321 ----G--VFF---F----LTTFMHFFLPETKNVPIELMDKCWREH  352 (365)
Q Consensus       321 ----~--~f~---~----~~~~~~~~~~et~~~~~~~~~~~~~~~  352 (365)
                          +  .|.   +    ..+..++++||||+|+.+|+.++.+++
T Consensus       428 ~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  428 QNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence                1  111   1    566778889999999999998888766

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=9.8e-31  Score=264.68  Aligned_cols=307  Identities=33%  Similarity=0.617  Sum_probs=267.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhh
Q 017823           16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFY   95 (365)
Q Consensus        16 ~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~   95 (365)
                      ++.+++.++..++.++++++.|+++|++|||+.++++.+++.++.++.++++|+++++++|++.|+|.|....       
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~-------  161 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASV-------  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhh-------
Confidence            5679999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             hcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH-------
Q 017823           96 FSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL-------  168 (365)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f-------  168 (365)
                                          ..+.|++|..|++.||...+..+....+|.+++..++....+. + ++||..+       
T Consensus       162 --------------------~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~  219 (513)
T KOG0254|consen  162 --------------------LAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPA  219 (513)
T ss_pred             --------------------cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHH
Confidence                                9999999999999999999999999999999998888877654 2 6899887       


Q ss_pred             -----------------------------------------------------------------------HhHHHHHHH
Q 017823          169 -----------------------------------------------------------------------KYRLQFVMA  177 (365)
Q Consensus       169 -----------------------------------------------------------------------~~~~~~~~~  177 (365)
                                                                                             ..+++....
T Consensus       220 ~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~  299 (513)
T KOG0254|consen  220 VILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIG  299 (513)
T ss_pred             HHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHH
Confidence                                                                                   145567788


Q ss_pred             HHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHH
Q 017823          178 ILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIG  257 (365)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~  257 (365)
                      ..+..++++++++...+|.+.+++..|.+.+. . ....+.++...+++.++.++.||+|||+.++.+...+.++.++++
T Consensus       300 ~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~-~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~  377 (513)
T KOG0254|consen  300 LLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-F-LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILA  377 (513)
T ss_pred             HHHHHHHHHhCCceEEeehHHHHHhcCCCCch-H-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999988665 4 677888999999999999999999999999999999999999998


Q ss_pred             HHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH-----------------
Q 017823          258 SIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA-----------------  320 (365)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-----------------  320 (365)
                      ........+. +......+..++..+++...++.+++|++|.+.+|.+|.+.|+++.++....                 
T Consensus       378 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~  456 (513)
T KOG0254|consen  378 VVGVFALYYP-NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE  456 (513)
T ss_pred             HHHHHhccCC-CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8754432211 1234557788888888999999999999999999999999999999999888                 


Q ss_pred             -----HHHHH-------HHH-HHHhhcccCCCCChHHHHHHHccCCc
Q 017823          321 -----GVFFF-------LTT-FMHFFLPETKNVPIELMDKCWREHWF  354 (365)
Q Consensus       321 -----~~f~~-------~~~-~~~~~~~et~~~~~~~~~~~~~~~~~  354 (365)
                           +.|..       ... +..+++||||+++++|+++.+++...
T Consensus       457 ~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~  503 (513)
T KOG0254|consen  457 ALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK  503 (513)
T ss_pred             hccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence                 11111       233 56678999999999999987765533

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=3.3e-29  Score=250.38  Aligned_cols=310  Identities=27%  Similarity=0.481  Sum_probs=234.8

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHH
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA------------FNIYMLIFGR   76 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a------------~~~~~~~~~r   76 (365)
                      .+++.++.+.+++.+++.++..+++++.|+++||+|||++++.+..++.++.+..+++            ++++.++++|
T Consensus        48 ~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R  127 (479)
T PRK10077         48 LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR  127 (479)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence            3557889999999999999999999999999999999999999999999998887763            3357788999


Q ss_pred             HHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           77 VLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        77 ~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      +++|++.|...+                           ...++++|++|+|+|+++.+..+.+..+|.++++.++..+.
T Consensus       128 ~l~G~~~g~~~~---------------------------~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  180 (479)
T PRK10077        128 IIGGIGVGLASM---------------------------LSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA  180 (479)
T ss_pred             HHHhhhHhHHhh---------------------------HHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999                           99999999999999999999999999999999988876554


Q ss_pred             cc-----cCCcchHHHH---------------------Hh-----H--H----------------------HH-------
Q 017823          157 KI-----KVGWGWRISL---------------------KY-----R--L----------------------QF-------  174 (365)
Q Consensus       157 ~~-----~~~~gwr~~f---------------------~~-----~--~----------------------~~-------  174 (365)
                      ..     .+.+|||+.|                     +.     +  +                      ..       
T Consensus       181 ~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (479)
T PRK10077        181 RSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKT  260 (479)
T ss_pred             ccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhh
Confidence            21     1346899888                     10     0  0                      00       


Q ss_pred             ------------HHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHH
Q 017823          175 ------------VMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLF  242 (365)
Q Consensus       175 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l  242 (365)
                                  ........+.+..+.+...+|.|.+.++.|.+..... ......++..+++.+++++++||+|||+.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~  339 (479)
T PRK10077        261 GGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQ  339 (479)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence                        0001111222233444556677888888898887776 777788889999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH--
Q 017823          243 LVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA--  320 (365)
Q Consensus       243 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~--  320 (365)
                      ..+..++.++.+.+.....         .+.........++++..++...+.|..+.+.+|.+|++.|+++.|+.+..  
T Consensus       340 i~~~~~~~v~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  410 (479)
T PRK10077        340 IIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW  410 (479)
T ss_pred             HHhHHHHHHHHHHHHHHHh---------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHH
Confidence            9999888888777765421         01112233344555556666666777788889999999999999987665  


Q ss_pred             -------------H-------------HHHH-------HHHHHHhhcccCCCCChHHHHHHHccCCcc
Q 017823          321 -------------G-------------VFFF-------LTTFMHFFLPETKNVPIELMDKCWREHWFW  355 (365)
Q Consensus       321 -------------~-------------~f~~-------~~~~~~~~~~et~~~~~~~~~~~~~~~~~~  355 (365)
                                   .             .|.+       ..++.+++.||||+++.+|.++.+++..++
T Consensus       411 ~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  478 (479)
T PRK10077        411 IANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETKK  478 (479)
T ss_pred             HHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcccC
Confidence                         0             1111       223344567999999999888887665543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.96  E-value=1.4e-27  Score=240.21  Aligned_cols=260  Identities=14%  Similarity=0.232  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHhhcchhhhhhhhhhh
Q 017823           22 TSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYM--------LIFGRVLLGVGIGFANQVSVWL   93 (365)
Q Consensus        22 ~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~--------~~~~r~l~G~~~g~~~~~~~~~   93 (365)
                      .++.++++.+++++.|+++||+|||+++..+.++++++++++++++|++.        ++++|+++|++.|...+     
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~-----  137 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYT-----  137 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHH-----
Confidence            47888999999999999999999999999999999999999999999864        89999999999999999     


Q ss_pred             hhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc-----cCCcchHHHH
Q 017823           94 FYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI-----KVGWGWRISL  168 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-----~~~~gwr~~f  168 (365)
                                            ....++.|++|+|+||+..++.+.+..+|..+++.+...+...     ..++|||+.|
T Consensus       138 ----------------------~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f  195 (490)
T PRK10642        138 ----------------------GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPF  195 (490)
T ss_pred             ----------------------HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHH
Confidence                                  8999999999999999999999988888888888766544321     1247999998


Q ss_pred             ---------------------Hh-----H------------------------HHHHHHHHHHHHHhcccccchhhcHHH
Q 017823          169 ---------------------KY-----R------------------------LQFVMAILIPFFQHVTRINVISFYAPV  198 (365)
Q Consensus       169 ---------------------~~-----~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (365)
                                           ++     +                        ++.........+.....++....|.|.
T Consensus       196 ~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  275 (490)
T PRK10642        196 FIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPS  275 (490)
T ss_pred             HHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 00     0                        000111111111122344556678888


Q ss_pred             HHH-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHH
Q 017823          199 LFR-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYL  277 (365)
Q Consensus       199 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (365)
                      +++ ..|++..+.. .......++..++.++.++++||+|||+.+..+.+...+..+......          .......
T Consensus       276 ~l~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  344 (490)
T PRK10642        276 YLSHNLHYSEDHGV-LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI----------NSNVIGL  344 (490)
T ss_pred             HHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHH
Confidence            884 5688887776 677777888899999999999999999988877654443333222111          0011222


Q ss_pred             HHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          278 ILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..+...+.+++.+...+.. ..+.+|.+|++.|+++.|+.+..
T Consensus       345 ~~~~~~~~g~~~~~~~g~~-~~~~~~~~p~~~Rg~~~g~~~~~  386 (490)
T PRK10642        345 IFAGLLMLAVILNCFTGVM-ASTLPAMFPTHIRYSALAAAFNI  386 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHCCCccchHHHHHHHHH
Confidence            2333333333333333433 34457999999999988875554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=3.6e-27  Score=238.01  Aligned_cols=273  Identities=21%  Similarity=0.240  Sum_probs=200.3

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhhcchh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFN------IYMLIFGRVLLGVGIG   84 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~------~~~~~~~r~l~G~~~g   84 (365)
                      .+.++.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.++++++++      ++.++++|++.|++.|
T Consensus        51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  130 (502)
T TIGR00887        51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG  130 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence            3456778899999999999999999999999999999999999999999999888865      7899999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc------
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI------  158 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~------  158 (365)
                      ...+                           ..+.+++|++|+++|+++.++.+....+|.++++.++..+...      
T Consensus       131 ~~~~---------------------------~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~  183 (502)
T TIGR00887       131 GDYP---------------------------LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLE  183 (502)
T ss_pred             hhhH---------------------------HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999                           9999999999999999999999999999999999887654320      


Q ss_pred             --------------cCCcchHHHH----------------------------Hh-H------------------------
Q 017823          159 --------------KVGWGWRISL----------------------------KY-R------------------------  171 (365)
Q Consensus       159 --------------~~~~gwr~~f----------------------------~~-~------------------------  171 (365)
                                    ..+++||+.+                            +. +                        
T Consensus       184 ~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  263 (502)
T TIGR00887       184 AAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKA  263 (502)
T ss_pred             cccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccch
Confidence                          1135799998                            00 0                        


Q ss_pred             --------------------HHH---HHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhh-----------HHHHHH
Q 017823          172 --------------------LQF---VMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSL-----------LMSAIV  217 (365)
Q Consensus       172 --------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~  217 (365)
                                          ++.   .+......+.....++....|.|.++++.|++.....           .....+
T Consensus       264 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  343 (502)
T TIGR00887       264 STAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLII  343 (502)
T ss_pred             hccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHH
Confidence                                000   0001111111122334455678888888888754321           012334


Q ss_pred             HHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhcccccccc
Q 017823          218 TGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLR  297 (365)
Q Consensus       218 ~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (365)
                      ..++.+++.++.++++||+|||+.+..+..++.++...+......       .+ ..  ......++....+..++.++.
T Consensus       344 ~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-------~~-~~--~~~~~~~~~~~~~~~~~~~~~  413 (502)
T TIGR00887       344 ALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-------LS-TH--GFLAIYVLAQFFANFGPNATT  413 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh-------cc-hh--HHHHHHHHHHHHHhcCCCchh
Confidence            455677788999999999999999988887777776666543200       00 11  111222222333455667777


Q ss_pred             ccccccCCChhhhhHHHHHHHHH
Q 017823          298 WLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       298 ~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+++|.+|++.|+++.|+.+.+
T Consensus       414 ~~~~~E~~p~~~R~~~~g~~~~~  436 (502)
T TIGR00887       414 FIVPGEVFPTRYRSTAHGISAAS  436 (502)
T ss_pred             hhhhhccCchhHHHHHHHHHHHH
Confidence            88889999999999999998877

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.95  E-value=7e-26  Score=223.89  Aligned_cols=276  Identities=35%  Similarity=0.641  Sum_probs=215.3

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhhcchhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA---FNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a---~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      -+.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+++.++   .+++.++++|++.|++.+...
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  145 (481)
T TIGR00879        66 DSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS  145 (481)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence            34668999999999999999999999999999999999999999999999998665   345689999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHh---hhhccccCCcch
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLN---YGTQKIKVGWGW  164 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~---~~~~~~~~~~gw  164 (365)
                      +                           ....++.|++|+++|+++.++.+.+..+|..+++.++   ....   +..+|
T Consensus       146 ~---------------------------~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~w  195 (481)
T TIGR00879       146 A---------------------------LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN---NTLGW  195 (481)
T ss_pred             h---------------------------HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC---CCccH
Confidence            9                           8889999999999999999999999999999999998   4433   34579


Q ss_pred             HHHH--------------------Hh------------------------------------------------------
Q 017823          165 RISL--------------------KY------------------------------------------------------  170 (365)
Q Consensus       165 r~~f--------------------~~------------------------------------------------------  170 (365)
                      |+.|                    +.                                                      
T Consensus       196 ~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (481)
T TIGR00879       196 RIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLF  275 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            9777                    00                                                      


Q ss_pred             ------HHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHH
Q 017823          171 ------RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLV  244 (365)
Q Consensus       171 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~  244 (365)
                            +++.........+..........++.|.+.++.|++..+.. ....+..+..+++.++.++++||+|||+.+..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  354 (481)
T TIGR00879       276 SSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF-LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI  354 (481)
T ss_pred             hcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence                  01222233333344344556677788999999999987777 88888899999999999999999999999998


Q ss_pred             hHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          245 GGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       245 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.++..++.+.+.........   +.+....+..+....++..+++.++.+....+..|.+|++.|+++.++.+..
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  427 (481)
T TIGR00879       355 GAAGMAICLFVLGILGASFVT---GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA  427 (481)
T ss_pred             HHHHHHHHHHHHHHHhhcccC---CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHH
Confidence            888777777766643211100   0000113333444445555666667777778889999999999999998777

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.95  E-value=3.9e-26  Score=226.15  Aligned_cols=265  Identities=18%  Similarity=0.211  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHhhcchhhhhhh
Q 017823           18 LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIY--------MLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        18 ~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~--------~~~~~r~l~G~~~g~~~~~   89 (365)
                      .+.+.+..+++..++++++|+++||+|||+++..+..+++++++++++++++.        .++++|+++|++.|...+ 
T Consensus        65 ~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~-  143 (432)
T PRK10406         65 TAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG-  143 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh-
Confidence            33444556667779999999999999999999999999999999999988764        689999999999999999 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc-----CCcch
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK-----VGWGW  164 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----~~~gw  164 (365)
                                                ...+++.|++|+|+|++..+..+.+...|.++++.+...+....     +.+||
T Consensus       144 --------------------------~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        144 --------------------------TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             --------------------------hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence                                      89999999999999999999999888888888887765544221     24789


Q ss_pred             HHHH---------------------Hh----------------HHHHHHHHHHHHHHhcccccchhhcHHHHHH-HcCCC
Q 017823          165 RISL---------------------KY----------------RLQFVMAILIPFFQHVTRINVISFYAPVLFR-TIKLS  206 (365)
Q Consensus       165 r~~f---------------------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~  206 (365)
                      |..|                     +.                .++.+.......+......+....|.|.+++ +.|++
T Consensus       198 r~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s  277 (432)
T PRK10406        198 RIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMH  277 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9998                     00                0011111111122212234556678888874 57888


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHH
Q 017823          207 ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYK  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (365)
                      .++.. ....+..+...++..+.|+++||++||+.+....++..+....+.....       . . ...........+..
T Consensus       278 ~~~~~-~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-------~-~-~~~~~~~~~~~~~~  347 (432)
T PRK10406        278 ANVAS-GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-------N-V-SSPYAAFGLVMCAL  347 (432)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-------c-C-CcHHHHHHHHHHHH
Confidence            87777 6677777788888999999999999999877665544333322221110       0 0 11122121122111


Q ss_pred             HhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       287 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ...+. ..+..+.+.+|.+|++.|+++.|+.+..
T Consensus       348 ~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        348 LIVSF-YTSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             HHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            12111 1233456678999999999999998876

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.95  E-value=8.8e-26  Score=220.99  Aligned_cols=267  Identities=12%  Similarity=0.036  Sum_probs=203.3

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++++|.++.+++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++++++|++.++++|+++|++.+...
T Consensus        36 ~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~  115 (393)
T PRK09705         36 RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ  115 (393)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence            45667779999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++| ++|+++++.+..+...|..+++.++..+.+..  .+||..
T Consensus       116 ~---------------------------~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~  165 (393)
T PRK09705        116 A---------------------------VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQT  165 (393)
T ss_pred             h---------------------------hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHH
Confidence            8                           77888889886 88999999999999999999999888776332  368876


Q ss_pred             H----------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHH
Q 017823          168 L----------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLM  213 (365)
Q Consensus       168 f----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  213 (365)
                      +                                  ..+++..+......+.....+.....|.|.++++.|.+..+.+ .
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag-~  244 (393)
T PRK09705        166 LAWWALPAVVALFAWWWQSAREVASSHKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSG-S  244 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccCCCcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh-H
Confidence            5                                  0011222222222322233555667788888888899999888 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhcccc
Q 017823          214 SAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSW  293 (365)
Q Consensus       214 ~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (365)
                      ...+..++.++++++.+++.||++||+....+..+..++...+....           .... ...  ..+.+.+.+...
T Consensus       245 ~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~-~~~--~~l~g~g~g~~~  310 (393)
T PRK09705        245 LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-----------LQLP-VLW--AMVCGLGLGGAF  310 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-----------chHH-HHH--HHHHHHhccchH
Confidence            88999999999999999999999999988887766666655443321           1111 111  222334433332


Q ss_pred             ccccccccccCC-ChhhhhHHHHHHHHH
Q 017823          294 GPLRWLVPSENF-PLEIISAGQIITVAA  320 (365)
Q Consensus       294 ~~~~~~~~~e~~-p~~~r~~~~~~~~~~  320 (365)
                      . .......+.. |++.|++..|+.+..
T Consensus       311 ~-~~~~~~~~~~~~~~~~g~~~g~~~~~  337 (393)
T PRK09705        311 P-LCLLLALDHSVQPAIAGKLVAFMQGI  337 (393)
T ss_pred             H-HHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            3 2333334555 567899988887776

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=3.6e-31  Score=262.78  Aligned_cols=301  Identities=35%  Similarity=0.660  Sum_probs=243.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhcchhhhhhhh
Q 017823           14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF---NIYMLIFGRVLLGVGIGFANQVS   90 (365)
Q Consensus        14 ~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~---~~~~~~~~r~l~G~~~g~~~~~~   90 (365)
                      +..+.++..++.++|..+|+++.|+++||+|||+.+..+.++..+++++.++++   |++.+.++|++.|++.|...+  
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~--  121 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYV--  121 (451)
T ss_pred             hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            346789999999999999999999999999999999999999999999999999   999999999999999999999  


Q ss_pred             hhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH--
Q 017823           91 VWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL--  168 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f--  168 (365)
                                               ..+.++.|..|+|+|++.....+.+..+|.+++..++....+..++++||..+  
T Consensus       122 -------------------------~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~  176 (451)
T PF00083_consen  122 -------------------------VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIF  176 (451)
T ss_pred             -------------------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                     99999999999999999999999999999999998887775444446799887  


Q ss_pred             ------------------------------------------------------------------------HhHHHHHH
Q 017823          169 ------------------------------------------------------------------------KYRLQFVM  176 (365)
Q Consensus       169 ------------------------------------------------------------------------~~~~~~~~  176 (365)
                                                                                              +++++...
T Consensus       177 ~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  256 (451)
T PF00083_consen  177 GAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLI  256 (451)
T ss_pred             cccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccc
Confidence                                                                                    01235566


Q ss_pred             HHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHH
Q 017823          177 AILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMI  256 (365)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~  256 (365)
                      .+.+..++.+++.+...+|.|.++++.+.+.+  . .......+...++.+++.++.||+|||+.++.+...+.++.+.+
T Consensus       257 ~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~  333 (451)
T PF00083_consen  257 ALLLQFFQQFSGINFIFYYSPSIFENAGISNS--F-LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLIL  333 (451)
T ss_pred             cccccccccccccccccccccccccccccccc--c-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            66666667677777888889999888888777  2 34566677888888999999999999999999988888887777


Q ss_pred             HHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH----------------
Q 017823          257 GSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA----------------  320 (365)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~----------------  320 (365)
                      +.....  ..  +.+.......++...++...++.+++++.+.+.+|.+|++.|+++.++....                
T Consensus       334 ~~~~~~--~~--~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~  409 (451)
T PF00083_consen  334 GIIFFL--GV--SSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF  409 (451)
T ss_pred             cccccc--cc--ccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            511000  00  0001123344455555666777788999999999999999999999999987                


Q ss_pred             -------------HHHHHHHHHHHhhcccCCCCChHHHHHH
Q 017823          321 -------------GVFFFLTTFMHFFLPETKNVPIELMDKC  348 (365)
Q Consensus       321 -------------~~f~~~~~~~~~~~~et~~~~~~~~~~~  348 (365)
                                   ++..+..++.++++||||+++++|+++.
T Consensus       410 ~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  410 NNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             ccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence                         1122245566788999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.94  E-value=1.1e-25  Score=234.34  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=113.5

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      ++++++..+.+++.++++++.+++++++|+++||+|||++++++.++.+++.++++++++++.++++|++.|++.|...+
T Consensus       195 ~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p  274 (742)
T TIGR01299       195 KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIP  274 (742)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            45677799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                                 ....++.|++|+++|++..++.+.+..+|.++++.++..+.
T Consensus       275 ---------------------------~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       275 ---------------------------IVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             ---------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       89999999999999999999999999999999998776554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.94  E-value=2.4e-25  Score=219.34  Aligned_cols=268  Identities=17%  Similarity=0.187  Sum_probs=202.8

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+..+.+++.++.+++++++.++++|++.|++.+...+
T Consensus        46 ~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~  125 (426)
T PRK12307         46 ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYA  125 (426)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Confidence            45666799999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|++|+|+|++++++.+.+..+|.++++.+...+.   +..+||+.+
T Consensus       126 ---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~---~~~~w~~~f  175 (426)
T PRK12307        126 ---------------------------CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA---EAYGWRAAF  175 (426)
T ss_pred             ---------------------------HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc---ccCCHHHHH
Confidence                                       88888999999999999999999999999999998877766   345798887


Q ss_pred             --------------------Hh---H--------------------------HHHH--HHHHHHHHHhcccccchhhcHH
Q 017823          169 --------------------KY---R--------------------------LQFV--MAILIPFFQHVTRINVISFYAP  197 (365)
Q Consensus       169 --------------------~~---~--------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~  197 (365)
                                          +.   +                          +...  .......+...........+.|
T Consensus       176 ~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T PRK12307        176 FVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLP  255 (426)
T ss_pred             HHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                00   0                          0000  1111111111222233456788


Q ss_pred             HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHH
Q 017823          198 VLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYL  277 (365)
Q Consensus       198 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (365)
                      .++++.|.+++... .......++.++++++.+++.||++||+.+..+.++..+..+.+....           ..... 
T Consensus       256 ~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-  322 (426)
T PRK12307        256 TYLAGEGFDTGVVS-NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-----------QDNYL-  322 (426)
T ss_pred             HHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----------cccHH-
Confidence            88888899888887 777888899999999999999999999988887766655544433321           01111 


Q ss_pred             HHHHHHHHHHhh-ccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          278 ILVLICVYKAGF-AFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       278 ~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                       ....++++..+ ..+..+....+..|.+|++.|+++.|+.+..
T Consensus       323 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  365 (426)
T PRK12307        323 -LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNL  365 (426)
T ss_pred             -HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHH
Confidence             11122222221 2233334445668999999999999988776

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2.6e-25  Score=213.50  Aligned_cols=267  Identities=18%  Similarity=0.187  Sum_probs=211.2

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhh
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      +.+|+++|..+.|+..|.|.++.++++|+...+.||+.||+.++..+.++.++++++++++||+.++++|++.|+..|..
T Consensus        39 iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f  118 (394)
T COG2814          39 IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF  118 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            34566677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                      ++                           ....+..|..||++|+++.++...+..++.++|.+++.++.   +.+|||.
T Consensus       119 ~~---------------------------i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig---~~~GWR~  168 (394)
T COG2814         119 WS---------------------------IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG---QLFGWRA  168 (394)
T ss_pred             HH---------------------------HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH---HHhhHHH
Confidence            99                           88999999999999999999999999999999999999998   5578999


Q ss_pred             HH------------------------------------Hh-HHHHHHHHHHHHHHhcccccchhhcH-HHHHHHcCCCcc
Q 017823          167 SL------------------------------------KY-RLQFVMAILIPFFQHVTRINVISFYA-PVLFRTIKLSES  208 (365)
Q Consensus       167 ~f------------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~  208 (365)
                      .|                                    .. +++.........+. +.+.+....|. |.+.+..|++++
T Consensus       169 ~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~-~~g~F~~ftYi~P~L~~v~g~s~~  247 (394)
T COG2814         169 TFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLF-MTGHFALYTYIRPFLESVAGFSVS  247 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHHHH-HcchhhhHHhHHHHHHHccCCCHh
Confidence            99                                    11 22333334443443 45555555554 555567899999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHh
Q 017823          209 TSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAG  288 (365)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (365)
                      ... +....++++.++|+.++|++.|| +.|+.+.....++.+..+.+.+..            ++.+...+...++++.
T Consensus       248 ~vs-~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~------------~~~~~~~~~~~~wg~a  313 (394)
T COG2814         248 AVS-LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG------------ASPALALALLFLWGFA  313 (394)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHH
Confidence            999 99999999999999999999999 888888888788887777776652            2334444444444443


Q ss_pred             hccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          289 FAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       289 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ........ ....++.. ++.+..+.++..+.
T Consensus       314 ~~~~~~~~-~~~~a~~~-p~~~~~a~sl~~aa  343 (394)
T COG2814         314 FSPALQGL-QTRLARLA-PDAADLAGSLNVAA  343 (394)
T ss_pred             hhhhhhHH-HHHhcccC-CCchHHHHHHHHHH
Confidence            32222222 12223422 45677777777766

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=4.8e-25  Score=215.79  Aligned_cols=267  Identities=19%  Similarity=0.162  Sum_probs=208.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      ++++.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.++++|++.+++.|++.|++.+...+
T Consensus        43 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  122 (406)
T PRK11551         43 QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALP  122 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|++|+++|++++++.+.+..+|..+++.++..+.   +..+||..+
T Consensus       123 ---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~  172 (406)
T PRK11551        123 ---------------------------NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA---GDAAWRHIF  172 (406)
T ss_pred             ---------------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccCHHHHH
Confidence                                       88889999999999999999999999999999999987766   345688877


Q ss_pred             ----------------------H---------hHH------------HHHHHHHHHHHHhcccccchhhcHHHHHHHcCC
Q 017823          169 ----------------------K---------YRL------------QFVMAILIPFFQHVTRINVISFYAPVLFRTIKL  205 (365)
Q Consensus       169 ----------------------~---------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  205 (365)
                                            +         .++            +.........+...........|.|.++++.|+
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~  252 (406)
T PRK11551        173 YVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGL  252 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                                  0         000            001111222222233344556678899988999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHH
Q 017823          206 SESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVY  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (365)
                      ++.+.+ .......++.++++++.+++.||+|||+.+..+.+...++.+.+...             +..+...+...+.
T Consensus       253 s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~  318 (406)
T PRK11551        253 SRSQAG-LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-------------PSFAGMLLAGFAA  318 (406)
T ss_pred             Chhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHH
Confidence            998888 88888899999999999999999999998887666655555444332             1122223333333


Q ss_pred             HHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          286 KAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       286 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +++.. +..+....+.+|.+|++.|+++.|+.+..
T Consensus       319 g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  352 (406)
T PRK11551        319 GLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAV  352 (406)
T ss_pred             HHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence            33332 23344456778999999999999998887

>TIGR00898 2A0119 cation transport protein

Probab=99.94  E-value=3.9e-25  Score=222.78  Aligned_cols=288  Identities=18%  Similarity=0.259  Sum_probs=206.6

Q ss_pred             CccccCC---chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchh
Q 017823            8 SNYSKFD---SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         8 ~~~~~~~---~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g   84 (365)
                      .++++++   +.+.++..+++.++..+++++.|+++||+|||+++..+.++..++.++.++++|++.+++.|++.|++.+
T Consensus       116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~  195 (505)
T TIGR00898       116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIG  195 (505)
T ss_pred             EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcc
Confidence            4567777   8899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      ...+                           ....++.|++|+++|+++.++.+.+..+|.++++.++..+.   +   |
T Consensus       196 ~~~~---------------------------~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~---w  242 (505)
T TIGR00898       196 GIWV---------------------------QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---D---W  242 (505)
T ss_pred             chHH---------------------------HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---H---H
Confidence            9999                           88999999999999999999999999999999999887664   2   7


Q ss_pred             HHHH---------------------Hh-----------------------------------H----------------H
Q 017823          165 RISL---------------------KY-----------------------------------R----------------L  172 (365)
Q Consensus       165 r~~f---------------------~~-----------------------------------~----------------~  172 (365)
                      |+.+                     ++                                   +                +
T Consensus       243 r~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  322 (505)
T TIGR00898       243 RWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRT  322 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCC
Confidence            7776                     00                                   0                0


Q ss_pred             HHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHH
Q 017823          173 QFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVS  252 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~  252 (365)
                      +.+....+.............+..+.+....+.+   .. ......++..+++.++.+++.||+|||+.+..+.++.+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~  398 (505)
T TIGR00898       323 PNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN---IY-LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVA  398 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC---hH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            0000000000000000011111112222333333   22 4456677888999999999999999999999988888877


Q ss_pred             HHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH------------
Q 017823          253 RVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA------------  320 (365)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~------------  320 (365)
                      .+.+....           ....+......++..++....+ +..+.+.+|.+|++.|+++.|+.+..            
T Consensus       399 ~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~  466 (505)
T TIGR00898       399 LLLLLFVP-----------VDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV  466 (505)
T ss_pred             HHHHHHcC-----------CCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence            77665541           1112233333333334333333 34467779999999999999998887            


Q ss_pred             --------------HHHHHHHHHHHhhcccCCCCChHH
Q 017823          321 --------------GVFFFLTTFMHFFLPETKNVPIEL  344 (365)
Q Consensus       321 --------------~~f~~~~~~~~~~~~et~~~~~~~  344 (365)
                                    +...+.+.+..+++|||++++++|
T Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       467 YLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence                          111113444566789999887653

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=1.2e-24  Score=212.27  Aligned_cols=266  Identities=15%  Similarity=0.141  Sum_probs=196.4

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+++.+++.+.+.+++.+++++.|++.||+|||+++..+..+..++++.+++++|++.++++|+++|++.+...
T Consensus        36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  115 (390)
T PRK03545         36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW  115 (390)
T ss_pred             HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            35677779999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|+.|+++|++++++.+.+.++|..++++++..+.   +..|||+.
T Consensus       116 ~---------------------------~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~---~~~gw~~~  165 (390)
T PRK03545        116 S---------------------------ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG---QYLGWRTT  165 (390)
T ss_pred             H---------------------------HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH---HHhcHHHH
Confidence            8                           78888999999999999999999999999999999998876   44579988


Q ss_pred             H------------------H----------------hHHH-HHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCcchhh
Q 017823          168 L------------------K----------------YRLQ-FVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSESTSL  211 (365)
Q Consensus       168 f------------------~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~  211 (365)
                      |                  +                .+++ ........+.. .........+.|.++ +..|.++++.+
T Consensus       166 f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~s~~~~~  244 (390)
T PRK03545        166 FLAIGGGALITLLLLIKLLPLLPSEHSGSLKSLPLLFRRPALVSLYLLTVVV-VTAHFTAYSYIEPFVQQVAGLSENFAT  244 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccHHH
Confidence            7                  0                0111 11222222222 112222334555555 44688988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhcc
Q 017823          212 LMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAF  291 (365)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (365)
                       .......++.++++++.+++.||++||+... +.....++...+....            ++.+...++..+++.+.. 
T Consensus       245 -~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~------------~~~~~~~~~~~l~g~~~~-  309 (390)
T PRK03545        245 -LLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAA------------NSEWHLSVLSIFWGIAIM-  309 (390)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHh------------chHHHHHHHHHHHHHHHh-
Confidence             7888889999999999999999999886543 3333333333322221            123333444445555442 


Q ss_pred             ccccccccccccCCChhhhhHHHHHHHHH
Q 017823          292 SWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       292 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..++.......|..| +.|+++.|+.+..
T Consensus       310 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~  337 (390)
T PRK03545        310 CIGLAMQVKVLKLAP-DATDVAMALFSGI  337 (390)
T ss_pred             cchHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence            223333445567766 5788888877765

>PRK09952 shikimate transporter; Provisional

Probab=99.94  E-value=1.8e-24  Score=214.82  Aligned_cols=259  Identities=16%  Similarity=0.232  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHhhcchhhhhhhhhhhhh
Q 017823           24 SLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIY--------MLIFGRVLLGVGIGFANQVSVWLFY   95 (365)
Q Consensus        24 ~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~   95 (365)
                      +.+++..+++++.|+++||+|||+++..+..+++++++++++++|++        .++++|+++|++.|...+       
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~-------  144 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWG-------  144 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHH-------
Confidence            55677889999999999999999999999999999999999999987        588999999999999999       


Q ss_pred             hcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc-----CCcchHHHH--
Q 017823           96 FSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK-----VGWGWRISL--  168 (365)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----~~~gwr~~f--  168 (365)
                                          ....++.|+.|+|+|++..+..+.+..+|.+++..+...+....     ..+|||..|  
T Consensus       145 --------------------~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~  204 (438)
T PRK09952        145 --------------------GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLF  204 (438)
T ss_pred             --------------------HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHH
Confidence                                88899999999999999999999999999999887766554221     247899998  


Q ss_pred             ------------------H----h--H-----------------HHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCC
Q 017823          169 ------------------K----Y--R-----------------LQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLS  206 (365)
Q Consensus       169 ------------------~----~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~  206 (365)
                                        +    .  +                 ++.+.......+......+....|.|.++ +..|++
T Consensus       205 ~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s  284 (438)
T PRK09952        205 SIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLP  284 (438)
T ss_pred             HHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                              0    0  0                 00111111111111223444556777777 457887


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHH
Q 017823          207 ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYK  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (365)
                      ++... ......++...++.++.|+++||+|||+.+..+.++..++.+.+.....         ..+..+..+....+.+
T Consensus       285 ~~~~~-~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~  354 (438)
T PRK09952        285 RELFL-NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---------AQSIFWIVFFSIMLAN  354 (438)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHH
Confidence            76554 4555667788889999999999999999888776655544433322210         0111222223333333


Q ss_pred             HhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       287 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ++.+... +..+.+.+|.+|++.|+++.++.+..
T Consensus       355 ~~~~~~~-~~~~~~~~e~~p~~~r~tg~g~~~~~  387 (438)
T PRK09952        355 IAHDMVV-CVQQPMFTEMFGASYRYSGAGVGYQV  387 (438)
T ss_pred             HHHHHHH-HHHHHHHHHHCCcchhHHHHhHHHHH
Confidence            4433333 33456778999999999998887655

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=1.3e-24  Score=214.04  Aligned_cols=272  Identities=14%  Similarity=0.128  Sum_probs=201.9

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhh
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      +++++++|.++.+++.+++++++.+++++.|++.||+|||+++..+.+++.++++++++++|++.+++.|++.|++.+..
T Consensus        34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  113 (412)
T TIGR02332        34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGF  113 (412)
T ss_pred             hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc---cCCcc
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI---KVGWG  163 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~---~~~~g  163 (365)
                      .+                           ....++.|++|+++|++++++++.+..+|..++++++..+.+.   .+..|
T Consensus       114 ~~---------------------------~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g  166 (412)
T TIGR02332       114 LP---------------------------GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG  166 (412)
T ss_pred             HH---------------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            88                           7888899999999999999999999999999999998877532   13468


Q ss_pred             hHHHH---------------------H-h--------HH----------------------------H--------HHHH
Q 017823          164 WRISL---------------------K-Y--------RL----------------------------Q--------FVMA  177 (365)
Q Consensus       164 wr~~f---------------------~-~--------~~----------------------------~--------~~~~  177 (365)
                      ||+.|                     + .        ++                            .        ..+.
T Consensus       167 wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
T TIGR02332       167 WQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIML  246 (412)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHH
Confidence            99999                     1 0        00                            0        0111


Q ss_pred             HHHHHHHhcccccchhhcHHHHHHHc--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHH-HHhHHHHHHHHH
Q 017823          178 ILIPFFQHVTRINVISFYAPVLFRTI--KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLF-LVGGIQMLVSRV  254 (365)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l-~~~~~~~~i~~~  254 (365)
                      .....+...........|.|.++++.  +++..+.. .......++..++.++.++++||++||+.. ........++. 
T Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~-~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-  324 (412)
T TIGR02332       247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIG-LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-  324 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhH-HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-
Confidence            22222333334556678999999774  56767777 778899999999999999999999987753 33333333322 


Q ss_pred             HHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          255 MIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+....          + . .............+... ..+..+....|.+|++.|+++.|+.+..
T Consensus       325 ~~~~~~----------~-~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~~  377 (412)
T TIGR02332       325 LLASAT----------D-H-NLIQLLGIIMASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINAT  377 (412)
T ss_pred             HHHHhc----------C-C-HHHHHHHHHHHHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHHh
Confidence            221110          1 1 11111122222222211 1233345557889999999999999988

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.93  E-value=2.7e-24  Score=213.14  Aligned_cols=272  Identities=19%  Similarity=0.327  Sum_probs=187.0

Q ss_pred             cccCCchHHHHHH-HH-----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHH
Q 017823           10 YSKFDSQLLTTFT-SS-----LYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIY--------MLIFG   75 (365)
Q Consensus        10 ~~~~~~~~~~~~~-s~-----~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~--------~~~~~   75 (365)
                      +++.++.+.+... +.     .+++..+++++.|+++||+|||+.++.+..++.+++++++++++++        .++++
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~  123 (434)
T PRK15075         44 TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLG  123 (434)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            3444455554332 22     2344457899999999999999999999999999999999999877        46899


Q ss_pred             HHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 017823           76 RVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGT  155 (365)
Q Consensus        76 r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  155 (365)
                      |+++|++.+...+                           ....++.|++|+++|++.+++.+.+..+|..+++.++..+
T Consensus       124 R~l~G~~~g~~~~---------------------------~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        124 RLLQGFSAGVELG---------------------------GVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             HHHhhccccccHH---------------------------HHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988                           7888999999999999999999988888888777777665


Q ss_pred             ccc-----cCCcchHHHH-----------------Hh--------------------HH--HHHHHHHHHHHHhcccccc
Q 017823          156 QKI-----KVGWGWRISL-----------------KY--------------------RL--QFVMAILIPFFQHVTRINV  191 (365)
Q Consensus       156 ~~~-----~~~~gwr~~f-----------------~~--------------------~~--~~~~~~~~~~~~~~~~~~~  191 (365)
                      ...     .+.+|||+.|                 +.                    ++  +.........+........
T Consensus       177 ~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
T PRK15075        177 NQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYL  256 (434)
T ss_pred             HHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            321     1347899888                 00                    00  1111111222222334556


Q ss_pred             hhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHH-HHHHHhhhcCCCCC
Q 017823          192 ISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVM-IGSIMADQIGDHGG  269 (365)
Q Consensus       192 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~-~~~~~~~~~~~~~~  269 (365)
                      ...|.|.++++ .|+++.+.. .......++.+++.++.|+++||+|||+.+..+.....+.... .....     +   
T Consensus       257 ~~~~~p~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~---  327 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAADSL-LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-----A---  327 (434)
T ss_pred             HHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-----c---
Confidence            77789998865 799988887 7778888999999999999999999999887665443322211 11110     0   


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                       .+... .......+.+.+++ ...+..+.+.+|.+|++.|+++.++.+.+
T Consensus       328 -~~~~~-~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~  375 (434)
T PRK15075        328 -APSFA-RMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSL  375 (434)
T ss_pred             -CCchH-HHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHH
Confidence             01111 11111222222332 22333345668999999999999886554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=1.4e-24  Score=210.95  Aligned_cols=263  Identities=10%  Similarity=-0.003  Sum_probs=181.5

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+|+++|+++.|++.+.+++++.+++++.|+++||+|||+++.........+......++|++.++++|+++|++.+...
T Consensus        18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~   97 (368)
T TIGR00903        18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLL   97 (368)
T ss_pred             HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHH
Confidence            34566779999999999999999999999999999999998766555554443333333799999999999999998644


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                                                  .....++|++|+|+|+++.++.+.+..+|.+++++++..+.   +.+|||..
T Consensus        98 ----------------------------~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~---~~~gWr~~  146 (368)
T TIGR00903        98 ----------------------------NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY---TAGGLQLL  146 (368)
T ss_pred             ----------------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHHH
Confidence                                        34445689999999999999999999999999999999887   45689998


Q ss_pred             H------------------H----h------------------HHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCc
Q 017823          168 L------------------K----Y------------------RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSE  207 (365)
Q Consensus       168 f------------------~----~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  207 (365)
                      |                  +    .                  +++..+......+......+....|.|.++++.|++.
T Consensus       147 f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~  226 (368)
T TIGR00903       147 IIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED  226 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh
Confidence            8                  1    0                  0122333434444445566777889999998888876


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhCcc---hHHHH-hHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHH
Q 017823          208 STSLLMSAIVTGSLGTISTSLSMILADRLGRK---VLFLV-GGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLIC  283 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr---~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (365)
                      + .. ....+..+.+.++   .++++||..||   +.... .....++....+...             ...+..+.+..
T Consensus       227 ~-~~-~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~  288 (368)
T TIGR00903       227 I-AG-DAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-------------LNRLALFAFIG  288 (368)
T ss_pred             H-HH-HHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-------------cccHHHHHHHH
Confidence            4 44 4455555545444   47778877654   33222 333333322222211             11122233333


Q ss_pred             HHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          284 VYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+++.... .+..+.+++|.+|++.|+++.|+.+..
T Consensus       289 l~~~~~~~~-~~~~~~~~~~~~p~~~rgt~~G~~~~~  324 (368)
T TIGR00903       289 IAGLLMLPA-YAIIMDWIGKFCDKELHGKAAGAIGFT  324 (368)
T ss_pred             HHHHhhhhh-HHHHHHHHHHhcchhhcCcccchhhHH
Confidence            333333222 233467789999999999999999997

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.93  E-value=2e-24  Score=207.24  Aligned_cols=269  Identities=13%  Similarity=0.047  Sum_probs=200.1

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++++|.++.+++.+++.++..+++++.|+++||+|||+++..+..+.+++.++.++++|++.++++|++.|++.+...
T Consensus        30 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  109 (377)
T TIGR00890        30 GRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAY  109 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34567779999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           .....+.|++| |+|+++.++...+.++|..+++++...+.   +..+||+.
T Consensus       110 ~---------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~  158 (377)
T TIGR00890       110 G---------------------------IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI---NLEGVPAA  158 (377)
T ss_pred             H---------------------------hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH---hcccHHHH
Confidence            7                           66667788876 68999999999999999887666655554   33579988


Q ss_pred             H----------------------H-------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCC
Q 017823          168 L----------------------K-------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLS  206 (365)
Q Consensus       168 f----------------------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  206 (365)
                      +                      +                   .+++..+......+...........+.+.+.++.+.+
T Consensus       159 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (377)
T TIGR00890       159 FIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLS  238 (377)
T ss_pred             HHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            7                      0                   0011111222222222222223334455566778888


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHH
Q 017823          207 ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYK  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (365)
                      +++.. .......+..++++++.+++.||++||+.+..+.....++.+.+....           ............+.+
T Consensus       239 ~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g  306 (377)
T TIGR00890       239 DGFLV-LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----------MLNDVLFLATVALVF  306 (377)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----------cchhHHHHHHHHHHH
Confidence            87777 788889999999999999999999999998888877777766654431           111222222333334


Q ss_pred             HhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       287 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.+.... ....+.+|.+|+++|+++.|+.+..
T Consensus       307 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~  339 (377)
T TIGR00890       307 FTWGGTIS-LFPSLVSDIFGPANSAANYGFLYTA  339 (377)
T ss_pred             HHhccchh-ccHHHHHHHhhhhhhhhHhHHHHHH
Confidence            44433333 3344568999999999999998877

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.93  E-value=6e-24  Score=207.71  Aligned_cols=266  Identities=15%  Similarity=0.108  Sum_probs=195.4

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA--------FNIYMLIFGRVLL   79 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a--------~~~~~~~~~r~l~   79 (365)
                      .+++|.|+.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+...++        .+++.+++.|+++
T Consensus        43 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  122 (399)
T PRK05122         43 HDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLL  122 (399)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Confidence            35667779999999999999999999999999999999999999999888877665543        2577899999999


Q ss_pred             hcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc
Q 017823           80 GVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK  159 (365)
Q Consensus        80 G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  159 (365)
                      |++.+...+                           ....++.|+.|+|+|++++++.+.+..+|..+++.++..+.   
T Consensus       123 G~~~~~~~~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~---  172 (399)
T PRK05122        123 GIGESLAGT---------------------------GSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY---  172 (399)
T ss_pred             HhhHHhhcc---------------------------hHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH---
Confidence            999999988                           77888899999999999999999999999999999988877   


Q ss_pred             CCcchHHHH-----------------H-----------hHH--HHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcch
Q 017823          160 VGWGWRISL-----------------K-----------YRL--QFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSEST  209 (365)
Q Consensus       160 ~~~gwr~~f-----------------~-----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  209 (365)
                      +..|||..+                 +           .++  +.....................+.|.+.++.|.+  .
T Consensus       173 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  250 (399)
T PRK05122        173 HWGGLAGLGLLIMLLALLGLLLARPRPAVPPVKGERLPFRRVLGRVWPYGMGLALASIGFGTIATFITLYYAARGWD--G  250 (399)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--c
Confidence            345798877                 0           000  0011111111111122334445677777666663  3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhh
Q 017823          210 SLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGF  289 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (365)
                      .. .......++.+++.++.+++.||++||+.+..+.....++...+...             ++.+...+...+.+++.
T Consensus       251 ~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~G~~~  316 (399)
T PRK05122        251 AA-LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------------PSPWMALIGAALTGFGF  316 (399)
T ss_pred             ch-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHhH
Confidence            34 45567788889999999999999999998888877777666555443             12233344445555555


Q ss_pred             ccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          290 AFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       290 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +..+... .....|..|++.|+++.++.+..
T Consensus       317 ~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~  346 (399)
T PRK05122        317 SLVFPAL-GVEAVKRVPPQNRGAALGAYSVF  346 (399)
T ss_pred             HHHHHHH-HHHHHHhCCHHHHHHHHHHHHHH
Confidence            4433332 33446889999999999987776

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.92  E-value=9.5e-24  Score=205.17  Aligned_cols=270  Identities=17%  Similarity=0.164  Sum_probs=202.0

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+.+.+++.+++.++..+++++.|.++||+|||+++..+..+.+++.++.+++++++.+++.|++.|++.+...
T Consensus        39 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  118 (405)
T TIGR00891        39 AGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEY  118 (405)
T ss_pred             HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh
Confidence            35667779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|+.|+++|++++++.+.+..+|..+++.++..+.+..+ .+||+.
T Consensus       119 ~---------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~  170 (405)
T TIGR00891       119 G---------------------------SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRAL  170 (405)
T ss_pred             H---------------------------HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHH
Confidence            9                           888899999999999999999999999999999999887764322 359988


Q ss_pred             H--------------------Hh------HH--------------H-----------------------HHHHHHHHHHH
Q 017823          168 L--------------------KY------RL--------------Q-----------------------FVMAILIPFFQ  184 (365)
Q Consensus       168 f--------------------~~------~~--------------~-----------------------~~~~~~~~~~~  184 (365)
                      +                    +.      .+              +                       .........+.
T Consensus       171 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (405)
T TIGR00891       171 FFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFA  250 (405)
T ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHH
Confidence            7                    00      00              0                       00111111111


Q ss_pred             hcccccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhh
Q 017823          185 HVTRINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQ  263 (365)
Q Consensus       185 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~  263 (365)
                       .........+.|.++ ++.|+++.+.. .......++.++++++.+++.||+|||+.+..+.....+..+.....    
T Consensus       251 -~~~~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----  324 (405)
T TIGR00891       251 -NLYSHPIQDLLPTYLKADLGLSPHTVA-NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI----  324 (405)
T ss_pred             -HHHHhhhhhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----
Confidence             112223334566666 56799998888 78888999999999999999999999998887766543332222211    


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          264 IGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                             . ...+...+...+.+....... +....+.+|.+|++.|+++.|+.+..
T Consensus       325 -------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~  372 (405)
T TIGR00891       325 -------G-ANVAVLGLGLFFQQMLVQGIW-GILPKHLGEYFPTDQRAAGLGFTYQL  372 (405)
T ss_pred             -------C-CchHHHHHHHHHHHHHHccch-hhHHHHHhhhCCcchhHHHhhHHHHH
Confidence                   0 112222233233333333233 33345668999999999999998877

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.92  E-value=2.2e-23  Score=197.70  Aligned_cols=265  Identities=24%  Similarity=0.310  Sum_probs=219.9

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      +.+.|+.+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.+...++++++.++++|++.|++.+...+ 
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~-  106 (352)
T cd06174          28 DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYP-  106 (352)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccH-
Confidence            4567799999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH-
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL-  168 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f-  168 (365)
                                                ....++.|+.|+|+|++.+++.+....+|..+++.++..+.+.   .+||..+ 
T Consensus       107 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~  157 (352)
T cd06174         107 --------------------------AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFL  157 (352)
T ss_pred             --------------------------hHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHH
Confidence                                      8999999999999999999999999999999999999988743   3588877 


Q ss_pred             --------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017823          169 --------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTI-KLSESTSLLMSAIVTGSLGTISTSLSMILA  233 (365)
Q Consensus       169 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  233 (365)
                                    ..+++....... .+...........+.|.+.++. |.++.+.+ .......++..++.++.+++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~  235 (352)
T cd06174         158 ILAILGLLLALLLLFLLRLLLLLALA-FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAG-LLLSLFGLGGILGALLGGLLS  235 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence                          112333333333 3333445667777888888665 88888888 889999999999999999999


Q ss_pred             hhhCcch-HHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhH
Q 017823          234 DRLGRKV-LFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISA  312 (365)
Q Consensus       234 dr~grr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  312 (365)
                      ||++||+ .+..+.....++.+.....             ++.+...+...+.+.+.+.. .+....+..|..|+++|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~  301 (352)
T cd06174         236 DRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGT  301 (352)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHH
Confidence            9999999 8888888888887777654             11344455555556665544 4455677799999999999


Q ss_pred             HHHHHHHH
Q 017823          313 GQIITVAA  320 (365)
Q Consensus       313 ~~~~~~~~  320 (365)
                      ..|+.+..
T Consensus       302 ~~~~~~~~  309 (352)
T cd06174         302 ASGLFNTF  309 (352)
T ss_pred             HHHHHHHH
Confidence            99998887

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=1e-23  Score=212.62  Aligned_cols=271  Identities=14%  Similarity=-0.002  Sum_probs=206.7

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.+.++.+|+.+.+.++..++.++.|+++||+|||+.+..+..++.++++++++++|++.++++|+++|++.+...
T Consensus        33 ~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~  112 (495)
T PRK14995         33 SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIV  112 (495)
T ss_pred             HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            34566679999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccC-CCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMA-PPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                      +                           .....+.+.+ |+++|++++++......+|..+||.+++.+.   ++.+||+
T Consensus       113 ~---------------------------~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~---~~~gwr~  162 (495)
T PRK14995        113 P---------------------------ATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL---EHFYWGS  162 (495)
T ss_pred             H---------------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCChHH
Confidence            8                           6666666665 6789999999999999999999999999998   4467999


Q ss_pred             HH------------------Hh---H-------HHH--------------------------------------------
Q 017823          167 SL------------------KY---R-------LQF--------------------------------------------  174 (365)
Q Consensus       167 ~f------------------~~---~-------~~~--------------------------------------------  174 (365)
                      .|                  +.   +       ...                                            
T Consensus       163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~  242 (495)
T PRK14995        163 VFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRT  242 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            98                  00   0       000                                            


Q ss_pred             ------------------HHHHHHHHHHhcccccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017823          175 ------------------VMAILIPFFQHVTRINVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADR  235 (365)
Q Consensus       175 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr  235 (365)
                                        ........+..........++.|.+++. .|+++.+++ ....+..+...++.++.|++.||
T Consensus       243 e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag-~~~~~~~~~~~~~~~~~g~l~~r  321 (495)
T PRK14995        243 QLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAG-MFMLPVMVASGFSGPIAGILVSR  321 (495)
T ss_pred             HhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence                              0000011111111223344567777754 699999999 88899999999999999999999


Q ss_pred             hCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHH
Q 017823          236 LGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQI  315 (365)
Q Consensus       236 ~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  315 (365)
                      +|+|+.+..+..+..++...+....          .....+.......+.+++.+....+. .....+..|+++++.+.+
T Consensus       322 ~g~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~g~~~~  390 (495)
T PRK14995        322 LGLRLVATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMALLGFSAASALLAS-TSAIMAAAPPEKAAAAGA  390 (495)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCHHhcchHHH
Confidence            9999988888777766665554431          01112233444555566655544444 334468899999999999


Q ss_pred             HHHHH
Q 017823          316 ITVAA  320 (365)
Q Consensus       316 ~~~~~  320 (365)
                      +.+..
T Consensus       391 ~~~~~  395 (495)
T PRK14995        391 IETMA  395 (495)
T ss_pred             HHHHH
Confidence            98877

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=6.7e-24  Score=202.96  Aligned_cols=267  Identities=11%  Similarity=0.036  Sum_probs=208.7

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHhhcchh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF-----NIYMLIFGRVLLGVGIG   84 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~-----~~~~~~~~r~l~G~~~g   84 (365)
                      +.+.|+.+.+++.+++.++..+++++.|+++||+|||+++..+..+..++.++..+++     |++.++++|++.|++.+
T Consensus        28 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  107 (365)
T TIGR00900        28 AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQA  107 (365)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            3566789999999999999999999999999999999999999999999888888887     99999999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      ...+                           ...+++.|+.|+++|++.+++.+.+..+|.++++.++..+.+   ..+|
T Consensus       108 ~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~g~  157 (365)
T TIGR00900       108 FFTP---------------------------AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---TLGI  157 (365)
T ss_pred             HHHH---------------------------HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HhhH
Confidence            9999                           888999999999999999999999999999999999988873   3568


Q ss_pred             HHHH-----------------------H---------------------hHHHHHHHHHHHHHHhcccccchh-hcHHHH
Q 017823          165 RISL-----------------------K---------------------YRLQFVMAILIPFFQHVTRINVIS-FYAPVL  199 (365)
Q Consensus       165 r~~f-----------------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  199 (365)
                      |..+                       +                     .+++.+.......+.......... .+.|.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (365)
T TIGR00900       158 KWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYV  237 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            8887                       0                     001112222222222122222232 577888


Q ss_pred             HHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHH
Q 017823          200 FRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLI  278 (365)
Q Consensus       200 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (365)
                      .++ .|.++.+.+ .......++.+++.++.+++.||.+||+.+..+.....++........            ++.+..
T Consensus       238 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  304 (365)
T TIGR00900       238 QSKYLGRGSTHYG-WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP------------PNFPLF  304 (365)
T ss_pred             HHHHhCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc------------hhHHHH
Confidence            865 788888888 888888999999999999999999999988877666666655554431            113344


Q ss_pred             HHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          279 LVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+..++.+++.+.. .+....+..|..|++.|+++.|+.+..
T Consensus       305 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (365)
T TIGR00900       305 LVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSL  345 (365)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            44555555555443 344456678999999999999999887

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.92  E-value=3e-23  Score=208.39  Aligned_cols=269  Identities=15%  Similarity=0.190  Sum_probs=200.5

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|+|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.++.++++|++.+++.|++.|++.+...+
T Consensus        48 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~  127 (496)
T PRK03893         48 GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYG  127 (496)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45677799999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|.+|+++|+++++....+..+|..+++.+...+.   +.++||+.+
T Consensus       128 ---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~w~~~f  177 (496)
T PRK03893        128 ---------------------------SSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV---PVWGWRALF  177 (496)
T ss_pred             ---------------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCHHHHH
Confidence                                       78888999999999999999999999999999999998877   446799887


Q ss_pred             ---------------------HhHH---------HH----------HHHH------------------------------
Q 017823          169 ---------------------KYRL---------QF----------VMAI------------------------------  178 (365)
Q Consensus       169 ---------------------~~~~---------~~----------~~~~------------------------------  178 (365)
                                           +.++         ..          ....                              
T Consensus       178 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (496)
T PRK03893        178 FIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLL  257 (496)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence                                 0000         00          0000                              


Q ss_pred             -----------------------HHHHHHhcccccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017823          179 -----------------------LIPFFQHVTRINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILAD  234 (365)
Q Consensus       179 -----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  234 (365)
                                             ....+..+........+.|.++ ++.|+++.+.+ .......++.++++++.++++|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~d  336 (496)
T PRK03893        258 CAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVA-NVLFFSGFGAAVGCCVGGFLGD  336 (496)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence                                   0000000001112345678888 47899999988 8889999999999999999999


Q ss_pred             hhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHH
Q 017823          235 RLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQ  314 (365)
Q Consensus       235 r~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  314 (365)
                      |+|||+.+..+..+..+..+.+...           .....+.........+.. +.+..+....+.+|.+|++.|+++.
T Consensus       337 r~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~  404 (496)
T PRK03893        337 WLGTRKAYVCSLLISQLLIIPVFAI-----------GGANVWVLGLLLFFQQML-GQGISGLLPKLIGGYFDTEQRAAGL  404 (496)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHhhc-----------cccHHHHHHHHHHHHHHH-hcccchhhHHHHHhhCCHHHhhccc
Confidence            9999998887765555444333222           111122222222222222 2223334445668999999999999


Q ss_pred             HHHHHH
Q 017823          315 IITVAA  320 (365)
Q Consensus       315 ~~~~~~  320 (365)
                      |+.+..
T Consensus       405 ~~~~~~  410 (496)
T PRK03893        405 GFTYNV  410 (496)
T ss_pred             chhhhh
Confidence            887666

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=1.1e-23  Score=202.78  Aligned_cols=274  Identities=16%  Similarity=0.140  Sum_probs=202.8

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+.+.+++.+++.++..+++++.|+++||+|||+.+..+.++..++..+.++++|++.++++|++.|++.+...
T Consensus        21 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  100 (399)
T TIGR00893        21 QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFF  100 (399)
T ss_pred             HHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhh
Confidence            45677789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++|+++|++.+++.+....+|.++++.++..+.+   ..+||+.
T Consensus       101 ~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~  150 (399)
T TIGR00893       101 P---------------------------GIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI---HFSWQWA  150 (399)
T ss_pred             h---------------------------HHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---hCCchHH
Confidence            9                           888999999999999999999999999999999999887763   3468887


Q ss_pred             H----------------------H-------------------------------------hHHHHHHHHHHHHHHhccc
Q 017823          168 L----------------------K-------------------------------------YRLQFVMAILIPFFQHVTR  188 (365)
Q Consensus       168 f----------------------~-------------------------------------~~~~~~~~~~~~~~~~~~~  188 (365)
                      +                      +                                     .+++..+......+.....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (399)
T TIGR00893       151 FIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIG  230 (399)
T ss_pred             HHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhH
Confidence            7                      0                                     0011222233333333445


Q ss_pred             ccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHH-HhHHHHHHHHHHHHHHHhhhcCC
Q 017823          189 INVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFL-VGGIQMLVSRVMIGSIMADQIGD  266 (365)
Q Consensus       189 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~-~~~~~~~i~~~~~~~~~~~~~~~  266 (365)
                      ......+.|.++ +..|.++.+.+ .......+..+++.++.++++||++||+... .......++.+.........   
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  306 (399)
T TIGR00893       231 LGFFLTWFPTYLVQERGLSILEAG-FMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT---  306 (399)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh---
Confidence            556666778777 45788888888 7888889999999999999999999996211 11111111111111110000   


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          267 HGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                        + ..+..+.......+...  ..+..+..+.+.+|.+|++.|+++.|+.+..
T Consensus       307 --~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (399)
T TIGR00893       307 --N-YVNIPYAALALVALGFF--GLGAGAIGWALISDNAPGNIAGLTGGLINSL  355 (399)
T ss_pred             --c-cchhHHHHHHHHHHHHh--chhhhhHHHHHHHhhcChhHHHHHHHHHHHH
Confidence              0 01122222222222222  2224566677889999999999999999888

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.92  E-value=6.5e-24  Score=212.34  Aligned_cols=273  Identities=10%  Similarity=-0.055  Sum_probs=193.2

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhhcc
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA-----AFNIYMLIFGRVLLGVG   82 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~-----a~~~~~~~~~r~l~G~~   82 (365)
                      .+++++|.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+..++     ++|++.+++.|++.|++
T Consensus        56 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  135 (467)
T PRK09556         56 ISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFF  135 (467)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            4567778999999999999999999999999999999999998888888777776665     58999999999999999


Q ss_pred             hhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCc
Q 017823           83 IGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGW  162 (365)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~  162 (365)
                      .+...+                           ....++.|++|+++||+++++.+.+..+|.++++++.....+.....
T Consensus       136 ~~~~~~---------------------------~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~  188 (467)
T PRK09556        136 QSTGGP---------------------------CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDG  188 (467)
T ss_pred             Hhccch---------------------------HHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccC
Confidence            999988                           88889999999999999999999999999999887765443211111


Q ss_pred             chHHHH---------------------Hh--------------------------------------HHHHHHHHHHHHH
Q 017823          163 GWRISL---------------------KY--------------------------------------RLQFVMAILIPFF  183 (365)
Q Consensus       163 gwr~~f---------------------~~--------------------------------------~~~~~~~~~~~~~  183 (365)
                      +||..|                     +.                                      +++..+......+
T Consensus       189 ~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  268 (467)
T PRK09556        189 HVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANI  268 (467)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHH
Confidence            355444                     00                                      0001111111122


Q ss_pred             HhcccccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhh
Q 017823          184 QHVTRINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMAD  262 (365)
Q Consensus       184 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~  262 (365)
                      ...........|.|.|+ ++.|++..++. .......++.+++.++.|+++||++||+..........+....+....  
T Consensus       269 ~~~~~~~~~~~~~p~yl~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~--  345 (467)
T PRK09556        269 FLYIVRIGIDNWSPVYAFQELGFSKEDAI-NTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH--  345 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh--
Confidence            22223345667899888 55799998888 788888899999999999999999999877655444333322222110  


Q ss_pred             hcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          263 QIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                              . .+.+...+..+..+.... +..........|.+|++.|+++.|+.+..
T Consensus       346 --------~-~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~p~~~~g~a~gi~~~~  393 (467)
T PRK09556        346 --------A-TSEYMYLASLFALGFLVF-GPQLLIGVAAVGFVPKKAIGVANGIKGTF  393 (467)
T ss_pred             --------c-CcHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence                    0 112222233333332221 11111123456999999999999999877

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.91  E-value=3.4e-23  Score=205.31  Aligned_cols=269  Identities=12%  Similarity=0.043  Sum_probs=194.9

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|+|+++.+++.+.+.++..+++++.|++.||+|||+++..+.++..++.++.++++|++.+.+.|++.|++.|...+
T Consensus        51 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~  130 (434)
T PRK11663         51 ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWP  130 (434)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccch
Confidence            45777899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|++|+++|++++++.+.+..+|..+++.+...+.   +.+|||+.|
T Consensus       131 ---------------------------~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~---~~~gw~~~f  180 (434)
T PRK11663        131 ---------------------------VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA---LHYGWRYGM  180 (434)
T ss_pred             ---------------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccHHHHH
Confidence                                       78888999999999999999999999999999999888876   346799887


Q ss_pred             ---------------------HhH---------------------------H----------HHHHHHHHHHHHhccccc
Q 017823          169 ---------------------KYR---------------------------L----------QFVMAILIPFFQHVTRIN  190 (365)
Q Consensus       169 ---------------------~~~---------------------------~----------~~~~~~~~~~~~~~~~~~  190 (365)
                                           +.+                           +          +..+......+.......
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (434)
T PRK11663        181 MIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRA  260 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence                                 000                           0          111222222222222334


Q ss_pred             chhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh--CcchHH-HHhHHHHHHHHHHHHHHHhhhcCC
Q 017823          191 VISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRL--GRKVLF-LVGGIQMLVSRVMIGSIMADQIGD  266 (365)
Q Consensus       191 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~  266 (365)
                      ....|.|.++ ++.|++..++. .......++..+++++.|+++||+  ++|+.. ....+...+....+....      
T Consensus       261 ~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~------  333 (434)
T PRK11663        261 AINDWGNLYMSETLGVDLVTAN-SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP------  333 (434)
T ss_pred             HHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc------
Confidence            5556788888 56799998888 888889999999999999999999  333332 222222222222221110      


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          267 HGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                          . .............+++ ..+..........|.+|++.|+++.|+.+..
T Consensus       334 ----~-~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  381 (434)
T PRK11663        334 ----F-ASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLF  381 (434)
T ss_pred             ----c-ccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHH
Confidence                0 1111111222222221 1111222234558999999999999999877

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=1.1e-23  Score=210.57  Aligned_cols=271  Identities=17%  Similarity=0.147  Sum_probs=209.8

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|.|..+.+++.+.+.++..++.++.|+++||+|||+.+..+..+..++.+++++++|++.++++|+++|++.+...+
T Consensus        30 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~  109 (485)
T TIGR00711        30 GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIP  109 (485)
T ss_pred             HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHH
Confidence            45677799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|++|+++|+++.++.+.+..+|..+++.+++.+.   ++++||+.|
T Consensus       110 ---------------------------~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~w~~~f  159 (485)
T TIGR00711       110 ---------------------------LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII---ENYHWRWIF  159 (485)
T ss_pred             ---------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc---cCcCceehh
Confidence                                       88899999999999999999999999999999999998887   445788766


Q ss_pred             ------------------HhH-H---------------------------------------------------------
Q 017823          169 ------------------KYR-L---------------------------------------------------------  172 (365)
Q Consensus       169 ------------------~~~-~---------------------------------------------------------  172 (365)
                                        +.+ +                                                         
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (485)
T TIGR00711       160 LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE  239 (485)
T ss_pred             hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence                              000 0                                                         


Q ss_pred             ---------------HHHHHHHHHHHHhcccccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017823          173 ---------------QFVMAILIPFFQHVTRINVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRL  236 (365)
Q Consensus       173 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  236 (365)
                                     +.+....+..+...........+.|.++++ .|.++.+.+ .......++.+++.++.+++.||+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~  318 (485)
T TIGR00711       240 LTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAG-LHILPVGLAPMLSSPIAGRMGDKI  318 (485)
T ss_pred             HcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence                           000000111111122233445677888754 689999988 888889999999999999999999


Q ss_pred             CcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823          237 GRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       237 grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                      |||+.+..+..+..++...+....        + ++...+.......+.+++.+....+.... ..|..|+++|+++.|+
T Consensus       319 ~~~~~~~~g~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~l~g~g~~~~~~~~~~~-~~~~~~~~~~g~~~~~  388 (485)
T TIGR00711       319 DPRKLVTIGLILYAVGFYWRAFTF--------T-PDTPFLAIALPQFIRGFGMGCFFMPLTTI-ALSGLPPHKIARGSSL  388 (485)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhccC--------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCHHHHhHHHHH
Confidence            999998888877777766655221        0 11122333344455555555444455433 3677899999999999


Q ss_pred             HHHH
Q 017823          317 TVAA  320 (365)
Q Consensus       317 ~~~~  320 (365)
                      .+..
T Consensus       389 ~~~~  392 (485)
T TIGR00711       389 SNFT  392 (485)
T ss_pred             HHHH
Confidence            8887

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.91  E-value=6.1e-23  Score=199.96  Aligned_cols=220  Identities=15%  Similarity=0.110  Sum_probs=176.7

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|.++.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++++++|++.+++.|++.|++.+...
T Consensus        30 ~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~  109 (382)
T PRK10091         30 AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFF  109 (382)
T ss_pred             HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHH
Confidence            34567779999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|+.|+++|+++++....+..+|..++++++..+.   +..+||+.
T Consensus       110 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~gwr~~  159 (382)
T PRK10091        110 G---------------------------VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS---QEFSWRYT  159 (382)
T ss_pred             H---------------------------HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh---hhccHHHH
Confidence            8                           67777899999999999999999999999999999988877   34579998


Q ss_pred             H------------------H---------h-------HHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCcchhhH
Q 017823          168 L------------------K---------Y-------RLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSESTSLL  212 (365)
Q Consensus       168 f------------------~---------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  212 (365)
                      |                  +         .       +++..+......+...........|.+.++ +..|.++++.+ 
T Consensus       160 f~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~-  238 (382)
T PRK10091        160 FLLIAVFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMT-  238 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcccccCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-
Confidence            8                  0         0       011111222111111112222233444444 55799998888 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHH
Q 017823          213 MSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGS  258 (365)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~  258 (365)
                      ......+++.++++++.+++.||+++|+.+..+..+..++.+.+..
T Consensus       239 ~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~  284 (382)
T PRK10091        239 FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF  284 (382)
T ss_pred             HHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999988887777776655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.91  E-value=1.6e-23  Score=206.22  Aligned_cols=293  Identities=10%  Similarity=-0.020  Sum_probs=211.6

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhhcchh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA-----AFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~-----a~~~~~~~~~r~l~G~~~g   84 (365)
                      +.+.|+.+.|++.+.+.++..+++++.|+++||+|||+.+..+..+.+++.+..+.     .++++.+++.|++.|++.+
T Consensus        46 ~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  125 (417)
T PRK10489         46 MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGS  125 (417)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            34556899999999999999999999999999999999998888777776655432     4678899999999999988


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      ...+                           ....++.|+.|+++|+++.++.+....+|..+|+.+++.+.+.   .+|
T Consensus       126 ~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~  175 (417)
T PRK10489        126 LGVT---------------------------ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGV  175 (417)
T ss_pred             HHHH---------------------------HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---Hhh
Confidence            8888                           7788899999999999999999999999999999998877632   346


Q ss_pred             HHHH-----------------H-----------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHHHH-c
Q 017823          165 RISL-----------------K-----------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLFRT-I  203 (365)
Q Consensus       165 r~~f-----------------~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  203 (365)
                      ++.+                 +                       .+++.+.......+... .......+.|.+.++ .
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~  254 (417)
T PRK10489        176 AWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLT-MASAVRVLYPALADEVW  254 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhcc
Confidence            6666                 0                       01111111111111111 123445577888876 7


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHH
Q 017823          204 KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLIC  283 (365)
Q Consensus       204 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (365)
                      |.++...+ .......++.+++.++.+++.||.++++.+..+.++..++.+.+...             ++.+...+..+
T Consensus       255 g~~~~~~g-~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~  320 (417)
T PRK10489        255 QMGAAQIG-LLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PMWILAVLCLA  320 (417)
T ss_pred             CCChhHhH-HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------chHHHHHHHHH
Confidence            99988888 78888899999999999999999877777777776666665554432             12233344444


Q ss_pred             HHHHhhccccccccccccccCCChhhhhHHHHHHHHH-----------------------------HHHHHHHHHHHhhc
Q 017823          284 VYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA-----------------------------GVFFFLTTFMHFFL  334 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-----------------------------~~f~~~~~~~~~~~  334 (365)
                      +++.+.+. ..+....+..|..|++.|+++.|+.+..                             .+..+.+++....+
T Consensus       321 ~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        321 LFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            44444332 2334456668999999999999998776                             11111345556677


Q ss_pred             ccCCCCChHHHHHH
Q 017823          335 PETKNVPIELMDKC  348 (365)
Q Consensus       335 ~et~~~~~~~~~~~  348 (365)
                      ||+|+++++|++++
T Consensus       400 ~~~~~~~~~~~~~~  413 (417)
T PRK10489        400 GELRRFRQTPPEVD  413 (417)
T ss_pred             ccccccccccccCC
Confidence            88888777766554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=1.8e-23  Score=199.20  Aligned_cols=271  Identities=20%  Similarity=0.320  Sum_probs=209.8

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+..+.+++..+..+++|.+.++++|++.|++.+...
T Consensus        24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  103 (352)
T PF07690_consen   24 AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFS  103 (352)
T ss_dssp             HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccc
Confidence            45677789999999999999999999999999999999999999999999997777777888899999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|+.|+++|++.++..+.+..+|.++++.++..+.   +..+||+.
T Consensus       104 ~---------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~~~~~~  153 (352)
T PF07690_consen  104 P---------------------------ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI---SYFGWRWA  153 (352)
T ss_dssp             H---------------------------HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHCHHCCH
T ss_pred             c---------------------------cccccccccchhhhhhhccccccchhhhhhhcccchhhhhh---hccccccc
Confidence            9                           89999999999999999999999999999999999999887   34568888


Q ss_pred             H-------------------------------Hh----------------HHHHHHHHHHHHHHhcccccchhhcHHHH-
Q 017823          168 L-------------------------------KY----------------RLQFVMAILIPFFQHVTRINVISFYAPVL-  199 (365)
Q Consensus       168 f-------------------------------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  199 (365)
                      +                               +.                +++..+......+...........+.|.+ 
T Consensus       154 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  233 (352)
T PF07690_consen  154 FLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYL  233 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhh
Confidence            7                               11                11111112222332223445577788887 


Q ss_pred             HHHcCCC-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHH
Q 017823          200 FRTIKLS-ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLI  278 (365)
Q Consensus       200 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (365)
                      .+..|.+ ..+.. .......+..+++.++.+++.||+++|+..........+..+.+....          ..++....
T Consensus       234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  302 (352)
T PF07690_consen  234 QEVLGFSGPSQAG-LLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLP----------FSSSPVWL  302 (352)
T ss_dssp             CHHHHCCTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSH----------HHCHHHHH
T ss_pred             hhccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH----------HhhhHHHH
Confidence            4778888 66777 788888999999999999999999998877776666666555554432          11123333


Q ss_pred             HHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          279 LVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .....+.+++.+.. .+....+..|..|+++|+++.|+.+..
T Consensus       303 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~  343 (352)
T PF07690_consen  303 IIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSI  343 (352)
T ss_dssp             HHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            44444455554443 444566778999999999999998876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10504 putative transporter; Provisional

Probab=99.91  E-value=4.3e-23  Score=206.22  Aligned_cols=270  Identities=13%  Similarity=0.115  Sum_probs=204.4

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|.|+.+.+++.+.+.++..++.++.|+++||+|||+++..+..+.+++.+.++++++++.++++|+++|++.+...+
T Consensus        38 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~  117 (471)
T PRK10504         38 QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVP  117 (471)
T ss_pred             HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHH
Confidence            35677799999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|++|+++|+++.+.......+|..+++.+++.+.+   ..+||+.|
T Consensus       118 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---~~gw~~~f  167 (471)
T PRK10504        118 ---------------------------VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---YASWHWIF  167 (471)
T ss_pred             ---------------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---hccHHHHH
Confidence                                       888888999999999999999999999999999999988874   45799888


Q ss_pred             -----------------------H-hH-----------------------------------------------------
Q 017823          169 -----------------------K-YR-----------------------------------------------------  171 (365)
Q Consensus       169 -----------------------~-~~-----------------------------------------------------  171 (365)
                                             + .|                                                     
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN  247 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                   0 00                                                     


Q ss_pred             ------------HHHHHHHHHHHHHhcccccchhhcHHHHHH-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCc
Q 017823          172 ------------LQFVMAILIPFFQHVTRINVISFYAPVLFR-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGR  238 (365)
Q Consensus       172 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr  238 (365)
                                  ++.+.......+...........+.|++++ ..|.++...+ .......+...++.++.+++.||+||
T Consensus       248 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~  326 (471)
T PRK10504        248 NNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRIVVQVVNRFGY  326 (471)
T ss_pred             CCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence                        000111111111112223344456788886 4788888888 77888888888888999999999999


Q ss_pred             chHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHH
Q 017823          239 KVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITV  318 (365)
Q Consensus       239 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  318 (365)
                      |+.+..+.....+....+....          ..+..+...+...+.+.+.+...++. .....+.+|++.++++.++.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~  395 (471)
T PRK10504        327 RRVLVATTLGLALVSLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLS  395 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHH
Confidence            9999888877777666555431          01112222222333334444444444 355578899999999988877


Q ss_pred             HH
Q 017823          319 AA  320 (365)
Q Consensus       319 ~~  320 (365)
                      ..
T Consensus       396 ~~  397 (471)
T PRK10504        396 MI  397 (471)
T ss_pred             HH
Confidence            66

>PRK12382 putative transporter; Provisional

Probab=99.91  E-value=1.3e-22  Score=198.01  Aligned_cols=266  Identities=14%  Similarity=0.113  Sum_probs=194.9

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA--------AFNIYMLIFGRVLL   79 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~--------a~~~~~~~~~r~l~   79 (365)
                      .+++|.|..+.|++.+.+.++..+++++.|+++||+||||.+..+.....++.+....        .+|++.++++|+++
T Consensus        43 ~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  122 (392)
T PRK12382         43 HHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLIL  122 (392)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999999999988877766543321        36889999999999


Q ss_pred             hcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc
Q 017823           80 GVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK  159 (365)
Q Consensus        80 G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  159 (365)
                      |++.+...+                           ...+++.|+.|+|+|+++++..+.+...|..++++++..+.   
T Consensus       123 G~~~~~~~~---------------------------~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~---  172 (392)
T PRK12382        123 GFGESQLLT---------------------------GALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH---  172 (392)
T ss_pred             HHHHHHHHH---------------------------HHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH---
Confidence            999998888                           77788899999999999999999999999999999988876   


Q ss_pred             CCcchHHHH--------------H-------------hHHHH---HHHHHHHHHHhcccccchhhcHHHHHHHcCCCcch
Q 017823          160 VGWGWRISL--------------K-------------YRLQF---VMAILIPFFQHVTRINVISFYAPVLFRTIKLSEST  209 (365)
Q Consensus       160 ~~~gwr~~f--------------~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  209 (365)
                      +..|||..+              +             ..++.   ....................+.|.++++.+.++  
T Consensus       173 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--  250 (392)
T PRK12382        173 SHFGFAALALTTMVLPLLAWAFNGTVRKVPAHAGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAM--  250 (392)
T ss_pred             hccChHHHHHHHHHHHHHHHHHHHhccCCCCCcccCchHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHhcCCch--
Confidence            345788765              0             00011   111111111111233445566777777766653  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhh
Q 017823          210 SLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGF  289 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (365)
                      .. .......++.++++++.+++.||+|+|+.+..+..+..++.+.+...             ++.+...+...+.+.+.
T Consensus       251 ~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~  316 (392)
T PRK12382        251 AG-FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------------PTAWVALAGAALTGAGC  316 (392)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------------ccHHHHHHHHHHHHHHH
Confidence            34 45566777888999999999999999999888877777776655442             11233344444555554


Q ss_pred             ccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          290 AFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       290 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +..... ......|..|+++|+++.|+.+..
T Consensus       317 ~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~  346 (392)
T PRK12382        317 SLIFPA-LGVEVVKRVPSQVRGTALGGYAAF  346 (392)
T ss_pred             HhHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            433333 334457889999999999998876

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=8.8e-23  Score=197.44  Aligned_cols=272  Identities=14%  Similarity=0.107  Sum_probs=205.4

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+.+.+++.+.+.++..+++++.|++.||+|||+.+..+.++..++.+..+++++++.+.+.|++.|++.+...
T Consensus        32 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  111 (385)
T TIGR00710        32 AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGS  111 (385)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHH
Confidence            35677789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++|+++|++..+..+....+|..+++.++..+.   +..+||..
T Consensus       112 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~~~~~  161 (385)
T TIGR00710       112 V---------------------------ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL---VWLSWHAI  161 (385)
T ss_pred             H---------------------------HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCHHHH
Confidence            9                           88899999999999999999999999999999999998876   33569987


Q ss_pred             H------------------------H---------------hHHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCc
Q 017823          168 L------------------------K---------------YRLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSE  207 (365)
Q Consensus       168 f------------------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~  207 (365)
                      +                        .               .+++..+..................+.|.++ ++.|.++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  241 (385)
T TIGR00710       162 FAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSP  241 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCH
Confidence            7                        0               0011112222222222223344455667766 4688998


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHH
Q 017823          208 STSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKA  287 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (365)
                      .+.+ .......+..+++.++.+++.||++||+.+..+.....++.+.+......        .............+.+.
T Consensus       242 ~~~g-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~  312 (385)
T TIGR00710       242 SVFG-LLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGSWAMIIGPMMFVGI  312 (385)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHH
Confidence            8888 78888899999999999999999999998888877777666655543210        10112222333334444


Q ss_pred             hhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          288 GFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       288 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+... +.......|..| +.|+++.++.+..
T Consensus       313 ~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~  343 (385)
T TIGR00710       313 GNSMIS-SIAMAYALEDFP-HVAGTASALFGTL  343 (385)
T ss_pred             HHHHHH-HHHHHHHhccCc-ccchHHHHHHHHH
Confidence            444333 333445567777 5689999887766

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=1.8e-22  Score=197.50  Aligned_cols=219  Identities=10%  Similarity=0.006  Sum_probs=177.1

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++++|.++.+++.+.+.+++.+++++.|++.||+|||+.+..+..+..++.++.+++++++.++++|++.|++.+...
T Consensus        34 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~  113 (394)
T PRK03699         34 AEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITM  113 (394)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhc
Confidence            35677789999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++|+++|++..+..+....+|..+++.+...+..  +..+||+.
T Consensus       114 ~---------------------------~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~gw~~~  164 (394)
T PRK03699        114 S---------------------------IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA--RSIEWYWV  164 (394)
T ss_pred             c---------------------------chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHH
Confidence            8                           788888999999999999999888889998888888766542  23579998


Q ss_pred             H-------------------Hh----------------HHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCcchhh
Q 017823          168 L-------------------KY----------------RLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSESTSL  211 (365)
Q Consensus       168 f-------------------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~  211 (365)
                      |                   +.                +++..+......+...........|.|.++ ++.|+++.+.+
T Consensus       165 f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~  244 (394)
T PRK03699        165 YACIGLVYVAIFILTLFSEFPALGKHAPKADKPVAKEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG  244 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccccccCccccCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhh
Confidence            8                   00                011122222223332334455667899998 55799999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHH
Q 017823          212 LMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMI  256 (365)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~  256 (365)
                       .......++..+++++.++++||++||+.+.....+..+....+
T Consensus       245 -~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~  288 (394)
T PRK03699        245 -NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF  288 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence             78888889999999999999999999998877665555544333

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=2e-22  Score=195.02  Aligned_cols=267  Identities=21%  Similarity=0.199  Sum_probs=202.7

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|.|+.+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.++..++++++.+++.|++.|++.+...+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  124 (398)
T TIGR00895        45 AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMP  124 (398)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchh
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|+.|+++|++++++.+.+..+|..+++.++..+.+   ..+||..+
T Consensus       125 ---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~g~~~~~  174 (398)
T TIGR00895       125 ---------------------------NLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP---VFGWRSLF  174 (398)
T ss_pred             ---------------------------hHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh---cccceeeh
Confidence                                       888999999999999999999999999999999999877763   34566544


Q ss_pred             ----------------------H---hH--------------------------------------H--------HHHHH
Q 017823          169 ----------------------K---YR--------------------------------------L--------QFVMA  177 (365)
Q Consensus       169 ----------------------~---~~--------------------------------------~--------~~~~~  177 (365)
                                            +   .+                                      +        +....
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (398)
T TIGR00895       175 YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVL  254 (398)
T ss_pred             hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHH
Confidence                                  0   00                                      0        00111


Q ss_pred             HHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHH
Q 017823          178 ILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIG  257 (365)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~  257 (365)
                      .....+...........+.|.+.++.|.++++.. .......++.+++.++.++++||++||+..... ....+....+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  332 (398)
T TIGR00895       255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAA-TGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVG  332 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHH
Confidence            1122222233445556678877788899988888 888889999999999999999999999544433 33333333322


Q ss_pred             HHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          258 SIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ...            ...+......++.+.+.+... +....+..|.+|++.|+++.|+.+..
T Consensus       333 ~~~------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~  382 (398)
T TIGR00895       333 STL------------FSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRATGVGWAIGI  382 (398)
T ss_pred             HHh------------hCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            211            112333444445555554443 34466779999999999999998877

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=5e-23  Score=196.14  Aligned_cols=271  Identities=13%  Similarity=0.068  Sum_probs=214.6

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .++.++|.+|+|.+.+.+++.+.++..+.|.++||.++|+.+..++.+.++.+++.+++++.+.+.+..++.|+..|...
T Consensus        56 ~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gw  135 (448)
T COG2271          56 IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGW  135 (448)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHh--hhhccccCCcchH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLN--YGTQKIKVGWGWR  165 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~--~~~~~~~~~~gwr  165 (365)
                      |                           .+...+..|+|+++||+..++++.+.++|..+.+++.  ..+.   .+.+||
T Consensus       136 p---------------------------p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~---~~~~w~  185 (448)
T COG2271         136 P---------------------------PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA---FHGGWR  185 (448)
T ss_pred             c---------------------------HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH---hccchh
Confidence            9                           9999999999999999999999999999999999988  5555   334799


Q ss_pred             HHH-----------------------------------------------------------HhHHHHHHHHHHHHHHhc
Q 017823          166 ISL-----------------------------------------------------------KYRLQFVMAILIPFFQHV  186 (365)
Q Consensus       166 ~~f-----------------------------------------------------------~~~~~~~~~~~~~~~~~~  186 (365)
                      ..|                                                           ..+++.++.+.+......
T Consensus       186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvY  265 (448)
T COG2271         186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVY  265 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            998                                                           123344555555544444


Q ss_pred             ccccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh--CcchHHHHhHHHHHHHHHHHHHHHhhh
Q 017823          187 TRINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRL--GRKVLFLVGGIQMLVSRVMIGSIMADQ  263 (365)
Q Consensus       187 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~l~~~~~~~~i~~~~~~~~~~~~  263 (365)
                      ..-..+..|.|.|+ +..|++...+. ...+.+-.++++|+++.|+++||+  |||....+.+.+.....+...+..   
T Consensus       266 ivR~gi~dW~p~YL~e~k~~s~~~a~-~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~---  341 (448)
T COG2271         266 VVRYGINDWGPLYLSEVKGFSLVKAN-WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA---  341 (448)
T ss_pred             HHHHHHhhhHHHHHHHhcCCCHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC---
Confidence            55677888999999 56799999999 999999999999999999999997  677555444433333333333321   


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          264 IGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                             ++.+.+...+++.+.++.. .+...+.-..+.|..|++.-|++.|+...+
T Consensus       342 -------~~~~~~l~~~~l~~iGf~I-yGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf  390 (448)
T COG2271         342 -------PNGSYLLDAILLFIIGFLI-YGPQMLIGLAAAEFVPKKAAGTATGFVGLF  390 (448)
T ss_pred             -------CCccHHHHHHHHHHHHHHH-hhHHHHHHHHHhccccHhhccchhchhhhH
Confidence                   2223344444444433332 233334455678999999999999988877

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.90  E-value=1.2e-22  Score=203.93  Aligned_cols=203  Identities=12%  Similarity=0.004  Sum_probs=153.1

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.+++++++.++++|++.|++.+...
T Consensus        63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~  142 (476)
T PLN00028         63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV  142 (476)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence            34667779999999999999999999999999999999999999999999999999999999999999999999887643


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----cc--cCC
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ----KI--KVG  161 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~----~~--~~~  161 (365)
                      +                            ...++.|++|+++|++++++......+|..+++.+...+.    +.  .+.
T Consensus       143 ~----------------------------~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~  194 (476)
T PLN00028        143 S----------------------------CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF  194 (476)
T ss_pred             H----------------------------HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence            3                            4456789999999999999987766666666655443332    11  112


Q ss_pred             cchHHHH------------------Hh--------------------HH--------HHHHHHHHHHHHhcccccchhhc
Q 017823          162 WGWRISL------------------KY--------------------RL--------QFVMAILIPFFQHVTRINVISFY  195 (365)
Q Consensus       162 ~gwr~~f------------------~~--------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~  195 (365)
                      .|||+.|                  +.                    ++        +..+......+...........+
T Consensus       195 ~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (476)
T PLN00028        195 TAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNI  274 (476)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhH
Confidence            4799998                  00                    00        00111111111112222334456


Q ss_pred             HHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcc
Q 017823          196 APVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRK  239 (365)
Q Consensus       196 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  239 (365)
                      .|.++ ++.|+++.++. ....+..++.+++++++|+++||++||
T Consensus       275 ~p~~l~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        275 IAEYFYDRFGLSLETAG-AIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            77776 55699999888 888899999999999999999999875

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.90  E-value=3.4e-22  Score=195.82  Aligned_cols=263  Identities=16%  Similarity=0.122  Sum_probs=192.2

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+++.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++.++++|++.++++|++.|++.+...
T Consensus        47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  126 (394)
T PRK10213         47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFW  126 (394)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++|+|+|+++++....+.++|..+++.++..+.   +.++||+.
T Consensus       127 ~---------------------------~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~---~~~gw~~~  176 (394)
T PRK10213        127 A---------------------------MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG---ELIGWRNV  176 (394)
T ss_pred             H---------------------------HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCHHHH
Confidence            9                           88889999999999999999999999999999999999887   44679988


Q ss_pred             H----------------------------------HhHHHHHHHHHHHHHHhcccccchhhc-HHHHHHHcCCCcchhhH
Q 017823          168 L----------------------------------KYRLQFVMAILIPFFQHVTRINVISFY-APVLFRTIKLSESTSLL  212 (365)
Q Consensus       168 f----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~  212 (365)
                      |                                  ..+++.++...+..+...........+ .|.+.++.|+++++.+ 
T Consensus       177 f~~~~~l~~~~~l~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-  255 (394)
T PRK10213        177 FNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLT-  255 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCcccccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH-
Confidence            8                                  001222222222222222222333334 5777788899998888 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccc
Q 017823          213 MSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFS  292 (365)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (365)
                      ......+++.+++..+.+++.||.+ |+.+..+........+.+....            +..+.......+.+++++..
T Consensus       256 ~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~l~G~~~~~~  322 (394)
T PRK10213        256 LVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------------SDKIVATGVAIIWGLTFALV  322 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHHhh
Confidence            7788888999999999999999954 4443333333333322222221            22334444555556565444


Q ss_pred             cccccccccccCCChhhhhHHHHH
Q 017823          293 WGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       293 ~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                      .... .....+..|++ +++..+.
T Consensus       323 ~~~~-~~~~~~~~~~~-~~~~~~~  344 (394)
T PRK10213        323 PVGW-STWITRSLADQ-AEKAGSI  344 (394)
T ss_pred             hHHH-HHHHHHHCccc-HHHHHHH
Confidence            3333 32345667743 3444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.90  E-value=4.5e-22  Score=192.60  Aligned_cols=270  Identities=14%  Similarity=0.121  Sum_probs=197.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|+|+++.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.+...++++++.+++.|++.|++.+...+
T Consensus        19 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   98 (377)
T PRK11102         19 ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASV   98 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence            45677799999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|++|+++|+++.++.+....+|..+++.++..+.+   .++||..+
T Consensus        99 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~  148 (377)
T PRK11102         99 ---------------------------VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV---WFSWHAIF  148 (377)
T ss_pred             ---------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcChHHHH
Confidence                                       788889999999999999999999999999999999888773   35688887


Q ss_pred             -----------------------H------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCC
Q 017823          169 -----------------------K------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLS  206 (365)
Q Consensus       169 -----------------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~  206 (365)
                                             +                  .+++............+........+.|.++ +..|.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  228 (377)
T PRK11102        149 WVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVS  228 (377)
T ss_pred             HHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCC
Confidence                                   0                  0011112222222222223334444555555 557999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHH
Q 017823          207 ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYK  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (365)
                      +++.+ .......+..+++.++.+++.||+|||+.+..+.....+..+.+.....         .+...+...+...++.
T Consensus       229 ~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  298 (377)
T PRK11102        229 PQNFG-YYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL---------LDLGFWALVVGVAAFV  298 (377)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHH
Confidence            98888 8888899999999999999999999999888877654444333322210         0011222222332332


Q ss_pred             HhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       287 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.+..... ......|..| +.++++.++.+..
T Consensus       299 ~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~~~  330 (377)
T PRK11102        299 GCVSMISSN-AMAVILDEFP-HMAGTASSLAGTL  330 (377)
T ss_pred             HHHHHhhHH-HHHHHhcccc-ccchHHHHHHHHH
Confidence            322222222 2234467766 7889888887664

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.90  E-value=9.1e-24  Score=202.22  Aligned_cols=303  Identities=22%  Similarity=0.274  Sum_probs=225.8

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhcchh
Q 017823           12 KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFN-------IYMLIFGRVLLGVGIG   84 (365)
Q Consensus        12 ~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~-------~~~~~~~r~l~G~~~g   84 (365)
                      ++++...+.+..+.++|..+|+++.|+++||+|||+++...+.+..+++++++++..       .+++.+.|+++|+|.|
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG  159 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG  159 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence            466788899999999999999999999999999999999999999999998887622       4788889999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc----ccC
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK----IKV  160 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~----~~~  160 (365)
                      +-+|                           .+.+..+|.+..++||...+..-...+.|.+.|..++..+..    ..+
T Consensus       160 GDYP---------------------------lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~  212 (538)
T KOG0252|consen  160 GDYP---------------------------LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN  212 (538)
T ss_pred             CCCc---------------------------chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence            9999                           888999999999999998888877777777777776655432    111


Q ss_pred             --------CcchHHHH----------------------------------------------------------------
Q 017823          161 --------GWGWRISL----------------------------------------------------------------  168 (365)
Q Consensus       161 --------~~gwr~~f----------------------------------------------------------------  168 (365)
                              ..-||..+                                                                
T Consensus       213 ~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~  292 (538)
T KOG0252|consen  213 GPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFG  292 (538)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccc
Confidence                    12599888                                                                


Q ss_pred             ------HhH-HHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHH-----HH----HHHHHHHHHHHHHHHHH
Q 017823          169 ------KYR-LQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLM-----SA----IVTGSLGTISTSLSMIL  232 (365)
Q Consensus       169 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~----~~~~~~~~~~~~~~g~l  232 (365)
                            ..+ -+.++.....++..-.+++....+...+++..|..+.... +     ..    .+.....++|..+...+
T Consensus       293 ~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~-~~~~~~vA~~~~iia~~~~vPGyw~tv~~  371 (538)
T KOG0252|consen  293 LFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANT-YHELFKVAEGNLIIAVCSTVPGYWFTVYF  371 (538)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcch-HHHHHHHHHHHHHHHHHccCCceeEEEEE
Confidence                  001 0223333333444345677778888888888887666554 3     11    12222223345555678


Q ss_pred             HhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhH
Q 017823          233 ADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISA  312 (365)
Q Consensus       233 ~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  312 (365)
                      +|++|||+..+.++.++.+..+.++.....        . .......++..+..++.+++.+.....+++|.+|++.|++
T Consensus       372 id~iGRk~iq~~GF~~~~i~~~~~~~~y~~--------~-~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t  442 (538)
T KOG0252|consen  372 IDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ--------L-ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST  442 (538)
T ss_pred             eehhhhHHHHHhhHHHHHHHHHHHcCCccc--------c-cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence            999999999999999999888887775311        1 1233445555566677788888888999999999999999


Q ss_pred             HHHHHHHH---------------------------HHH------HHHHHHHHhhcccCCCCChHHHHHHHcc
Q 017823          313 GQIITVAA---------------------------GVF------FFLTTFMHFFLPETKNVPIELMDKCWRE  351 (365)
Q Consensus       313 ~~~~~~~~---------------------------~~f------~~~~~~~~~~~~et~~~~~~~~~~~~~~  351 (365)
                      +.|+..+.                           .++      .+.+.+..+++||||+++++|++++.+.
T Consensus       443 ~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~~~  514 (538)
T KOG0252|consen  443 CHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEEES  514 (538)
T ss_pred             hhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChhhc
Confidence            99999988                           122      2255666778999999999988655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.90  E-value=1.4e-22  Score=194.62  Aligned_cols=273  Identities=12%  Similarity=0.027  Sum_probs=195.1

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+++.+++.+++.++..+++++.|+++||+|||+.+..+..+..++.++.+++++++.+++.|++.|++.+...
T Consensus        22 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  101 (379)
T TIGR00881        22 VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGW  101 (379)
T ss_pred             HHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Confidence            35567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHH-HHhhhhccccCCcchHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSAN-LLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~-~~~~~~~~~~~~~gwr~  166 (365)
                      +                           ....++.|+.|+++|+++.++.+.+..+|..+++ .++..+.   +..+||.
T Consensus       102 ~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~  151 (379)
T TIGR00881       102 P---------------------------PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA---ELYSWHW  151 (379)
T ss_pred             C---------------------------chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH---hcCCchh
Confidence            9                           8889999999999999999999999999999999 4555554   2346887


Q ss_pred             HH---------------------Hh-------------------------------------HHHHHHHHHHHHHHhccc
Q 017823          167 SL---------------------KY-------------------------------------RLQFVMAILIPFFQHVTR  188 (365)
Q Consensus       167 ~f---------------------~~-------------------------------------~~~~~~~~~~~~~~~~~~  188 (365)
                      .+                     +.                                     +++.++......+.....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (379)
T TIGR00881       152 VFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVV  231 (379)
T ss_pred             HHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            76                     00                                     011122222222222333


Q ss_pred             ccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          189 INVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       189 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      ......+.|.++ +..|+++.+.. .......+..+++.++.+++.||..+|+.....................      
T Consensus       232 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------  304 (379)
T TIGR00881       232 RTGILDWSPLYLTQEKGFSKEKAS-WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL------  304 (379)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc------
Confidence            445566778777 45799988888 8888899999999999999999864433222222211111111111110      


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                        .+..............+... .+..+....+..|.+|++.|+++.|+.+..
T Consensus       305 --~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  354 (379)
T TIGR00881       305 --NPAANPLMDLICLFALGFLV-YGPQMLIGVIASELAPKKAAGTAAGFVGFF  354 (379)
T ss_pred             --CcchhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence              01111222223333333322 223333345668999999999999999877

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.90  E-value=4.5e-22  Score=192.05  Aligned_cols=269  Identities=22%  Similarity=0.311  Sum_probs=192.0

Q ss_pred             CCchHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHh
Q 017823           13 FDSQLLTTFTSS-----LYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIY--------MLIFGRVLL   79 (365)
Q Consensus        13 ~~~~~~~~~~s~-----~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~--------~~~~~r~l~   79 (365)
                      .++++.+...+.     .+++..+++++.|+++||+|||+++..+..+..++.++.+++++++        .++++|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            345555554443     3444567899999999999999999999999999999999998875        588899999


Q ss_pred             hcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc-
Q 017823           80 GVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI-  158 (365)
Q Consensus        80 G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-  158 (365)
                      |++.+...+                           ....++.|+.|+++|++..+..+.+..+|.++++.++..+... 
T Consensus       107 G~~~~~~~~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~  159 (394)
T TIGR00883       107 GFSLGGEWG---------------------------GAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL  159 (394)
T ss_pred             Hhhcccccc---------------------------ccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999                           8899999999999999999999999999999999887655321 


Q ss_pred             ----cCCcchHHHH-----------------------------------------HhHHHHHHHHHHHHHHhcccccchh
Q 017823          159 ----KVGWGWRISL-----------------------------------------KYRLQFVMAILIPFFQHVTRINVIS  193 (365)
Q Consensus       159 ----~~~~gwr~~f-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  193 (365)
                          .+.++||..+                                         +++++.........+..........
T Consensus       160 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (394)
T TIGR00883       160 GDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLIT  239 (394)
T ss_pred             CHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence                1246899887                                         0111112222222222233445556


Q ss_pred             hcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHH-HHHHHHHhhhcCCCCCCc
Q 017823          194 FYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSR-VMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       194 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~  271 (365)
                      .+.|.+. ++.|.++++.. .......+...++.++.++++||+|||+.+.....+..+.. .......          .
T Consensus       240 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----------~  308 (394)
T TIGR00883       240 TYLPTYLTQTLGLSANSAL-LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL----------D  308 (394)
T ss_pred             HHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh----------c
Confidence            6788888 56788888888 78888889999999999999999999998775554443333 2222111          0


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .++.+.......+.+.+.+....+ .....+|.+|++.|+++.++.+..
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~  356 (394)
T TIGR00883       309 SGSFTLFFFLVLGLALIGGMYTGP-MGSFLPELFPTEVRYTGASLAYNL  356 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhh-HHHHHHHhCCccceeeEeeehhHh
Confidence            112333334444444544444444 456678999999999988875443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.90  E-value=3.5e-22  Score=192.23  Aligned_cols=273  Identities=15%  Similarity=0.124  Sum_probs=195.1

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhcchhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF-NIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~-~~~~~~~~r~l~G~~~g~~   86 (365)
                      .+++|+|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++.++++ +++.+++.|++.|++.+. 
T Consensus        29 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-  107 (366)
T TIGR00886        29 KDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-  107 (366)
T ss_pred             HHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-
Confidence            456777899999999999999999999999999999999999999999999999999999 999999999999998654 


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc-------c
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI-------K  159 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-------~  159 (365)
                      .+                           ....++.|++|+++|+++.++......+|..+++.++..+...       .
T Consensus       108 ~~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886       108 FA---------------------------SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             hH---------------------------hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            45                           5667889999999999999999877777776666665444321       0


Q ss_pred             CCcchHHHH------------------------------HhH----------------H-----HHHHHHHHHHHHhccc
Q 017823          160 VGWGWRISL------------------------------KYR----------------L-----QFVMAILIPFFQHVTR  188 (365)
Q Consensus       160 ~~~gwr~~f------------------------------~~~----------------~-----~~~~~~~~~~~~~~~~  188 (365)
                      ...+||+.+                              +.+                +     +..+......+.....
T Consensus       161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (366)
T TIGR00886       161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGS  240 (366)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHH
Confidence            123566554                              000                0     1112222222222333


Q ss_pred             ccchhhcHHHHHH-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          189 INVISFYAPVLFR-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       189 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      ......+.|.+++ ..|.++.+.+ ....+..+..++++++.++++||+|||+.+..+......+...+....       
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------  312 (366)
T TIGR00886       241 FLGVSSIFAMFFKDQFGLSKVTAG-AYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL-------  312 (366)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC-------
Confidence            4455567777774 5688988888 788888899999999999999999999888777666655555544331       


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                        .++...+.............+.+.+. .+...+|..| +++|++.|+.++.
T Consensus       313 --~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~  361 (366)
T TIGR00886       313 --VSPLSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAI  361 (366)
T ss_pred             --CCcchHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHh
Confidence              01002333333333444444444443 3556678887 5899999987764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.89  E-value=7.8e-22  Score=192.43  Aligned_cols=219  Identities=17%  Similarity=0.180  Sum_probs=176.5

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|.|.++.++..+.+.++..+++++.|+++||+|||+.+..+..+..++.++..++++++.++++|++.|++.+...+
T Consensus        31 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  110 (392)
T PRK10473         31 ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYV  110 (392)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHH
Confidence            45677799999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|.+|+++|+++.+..+....+|..+++.++..+.   +..+||..+
T Consensus       111 ---------------------------~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~---~~~g~~~~~  160 (392)
T PRK10473        111 ---------------------------VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM---LKFPWQSLF  160 (392)
T ss_pred             ---------------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcChHHHH
Confidence                                       78888999999999999999999999999999999988776   335688876


Q ss_pred             --------------------------------------HhHHH-HHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCcc
Q 017823          169 --------------------------------------KYRLQ-FVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSES  208 (365)
Q Consensus       169 --------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~  208 (365)
                                                            ..+++ ........... .........+.|.++ ++.|+++.
T Consensus       161 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~  239 (392)
T PRK10473        161 YTMAAMGILVLLLSLFILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLS-VTVILTFVNTSPVLLMEQMGFSRG  239 (392)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccCCccchHHHHHHHHhCHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHcCCCHH
Confidence                                                  00111 12112211111 112223334456555 56789888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHH
Q 017823          209 TSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~  259 (365)
                      +.+ ......++..+++.++.+++.||+|||+.+..+..+..++.+.+...
T Consensus       240 ~~~-~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        240 EYA-IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            887 78888899999999999999999999999988888777776666554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.89  E-value=2.4e-21  Score=191.66  Aligned_cols=273  Identities=14%  Similarity=0.054  Sum_probs=189.6

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhhcchh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA-----FNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a-----~~~~~~~~~r~l~G~~~g   84 (365)
                      ++++|++|.+++.+++.+++.++.++.|.+.||+|+|+++..+..+.++.++..+++     +|++.+++.|++.|++ |
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g  142 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G  142 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence            577889999999999999999999999999999999999999999999999999987     8999999999999998 6


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-----c--
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ-----K--  157 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~-----~--  157 (365)
                      ..++                           .....+++++|+++||++.++.....++|..+++++...+.     .  
T Consensus       143 ~~f~---------------------------~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~  195 (462)
T PRK15034        143 ANFA---------------------------SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL  195 (462)
T ss_pred             HhHH---------------------------HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            6777                           78888999999999999999997666666655544443221     0  


Q ss_pred             --------ccCCcchHHHH---------------------------------HhHHHHHHHHHHHHHHhcccccchhhcH
Q 017823          158 --------IKVGWGWRISL---------------------------------KYRLQFVMAILIPFFQHVTRINVISFYA  196 (365)
Q Consensus       158 --------~~~~~gwr~~f---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (365)
                              ..+..+||...                                 ..|++..+.+....+..+..+....++.
T Consensus       196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~l  275 (462)
T PRK15034        196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGF  275 (462)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence                    00123455544                                 0111112222233333455666677788


Q ss_pred             HHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHH
Q 017823          197 PVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAY  276 (365)
Q Consensus       197 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  276 (365)
                      |.+.++ .++..... ....+..+...+.++++|+++||+|+|+++..+++.+.++.........       ..+..+.+
T Consensus       276 p~~~~~-~~~~~~~l-~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp-------~~~~~~~~  346 (462)
T PRK15034        276 AMLAKT-QFPDVNIL-RLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP-------GTGSGNFI  346 (462)
T ss_pred             HHHHHH-HcChHHHH-HHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-------cccccHHH
Confidence            888855 34433333 3455567888999999999999999999999988877777655444321       11112233


Q ss_pred             HHHHHHHHHHHhhccccccccccccccCCCh---------------------hhhhHHHHHHHHH
Q 017823          277 LILVLICVYKAGFAFSWGPLRWLVPSENFPL---------------------EIISAGQIITVAA  320 (365)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~~~~~~~  320 (365)
                      ...+......+..+.+.+.+ +-++++.+|+                     ++-|.+.|+..+.
T Consensus       347 ~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~  410 (462)
T PRK15034        347 AFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAI  410 (462)
T ss_pred             HHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHH
Confidence            33333333334445555554 3344566664                     1456777777766

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=2.5e-21  Score=189.85  Aligned_cols=271  Identities=13%  Similarity=0.041  Sum_probs=197.9

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      ++++.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+..+..++.+...++++++.+++.|++.|++.+...+
T Consensus        41 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~  120 (406)
T PRK15402         41 EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGA  120 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHH
Confidence            56677799999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|.+|+++|.+..+.......+|..+++.++..+.+   ..+||+.+
T Consensus       121 ---------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~~w~~~~  170 (406)
T PRK15402        121 ---------------------------VGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH---VLPWRGMF  170 (406)
T ss_pred             ---------------------------HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCccHHH
Confidence                                       777788999999999999999888888899999999887763   34688877


Q ss_pred             ---------------------------H-------------hHHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCc
Q 017823          169 ---------------------------K-------------YRLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSE  207 (365)
Q Consensus       169 ---------------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~  207 (365)
                                                 +             .+++.++..................+.|.++ ++.|.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~  250 (406)
T PRK15402        171 VLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSS  250 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCH
Confidence                                       0             0011122222222111112223334567666 5578888


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHH
Q 017823          208 STSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKA  287 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (365)
                      .+.+ .......++.+++.++.++++||+++|+.+..+.+...++...+......        .....+...+...+.+.
T Consensus       251 ~~~g-~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        251 YEYG-LLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHHHHHHHHH
Confidence            8777 66666777888999999999999999999888877777766666554210        11123333444455555


Q ss_pred             hhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          288 GFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       288 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+....+. .... ...++++|++..+..+..
T Consensus       322 g~~~~~~~~-~~~~-~~~~~~~~g~~~~~~~~~  352 (406)
T PRK15402        322 GIGLANAGL-YRLT-LFSSDVSKGTVSAAMGML  352 (406)
T ss_pred             HHHHHhhhH-HHHH-hhhccccccHHHHHHHHH
Confidence            554433333 2222 233457889888887776

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=4e-23  Score=198.52  Aligned_cols=275  Identities=16%  Similarity=0.192  Sum_probs=203.4

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhh
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      ++++++.++++.|++.+.+.+.+.+.+|++|+++|||.||+++.+|.+++.++.+.+++++.||++.++|.+.|+|++..
T Consensus        59 v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~  138 (493)
T KOG1330|consen   59 VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASY  138 (493)
T ss_pred             HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                      .+                           .++++++|.+|.++|+++.++++.+..+|..+|.+.+..+.+....  ||+
T Consensus       139 ~~---------------------------ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~--Wr~  189 (493)
T KOG1330|consen  139 SP---------------------------IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW--WRW  189 (493)
T ss_pred             cc---------------------------cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc--eEE
Confidence            99                           9999999999999999999999999999999999999988876542  898


Q ss_pred             HH-------------------------------------------HhHH-----HHHHHHHHHHHHhcccccchhhcHHH
Q 017823          167 SL-------------------------------------------KYRL-----QFVMAILIPFFQHVTRINVISFYAPV  198 (365)
Q Consensus       167 ~f-------------------------------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (365)
                      .|                                           +.-+     +..................+.+|.|.
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~  269 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPA  269 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhh
Confidence            88                                           0000     11111111222112233455556666


Q ss_pred             HH----HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------hH-HHHhHHHHHHHHHHHHHHHhhhcCC
Q 017823          199 LF----RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRK-------VL-FLVGGIQMLVSRVMIGSIMADQIGD  266 (365)
Q Consensus       199 ~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-------~~-l~~~~~~~~i~~~~~~~~~~~~~~~  266 (365)
                      +.    +-.|++.++.. ....+...++.+|.+.+|.++||+.|+       +. -..+......+...+....      
T Consensus       270 ~~~~~~~~~~~~~~~~~-ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~------  342 (493)
T KOG1330|consen  270 FIYYSYELIGFDHNATL-IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP------  342 (493)
T ss_pred             HHHHHHHHhCCccccch-hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH------
Confidence            55    33566777777 888999999999999999999995331       11 1222222222222222221      


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          267 HGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                        .......+..++++.+........+++..... .|++|++.|.++.++...+
T Consensus       343 --~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~-l~vV~p~~Rt~a~a~~~~~  393 (493)
T KOG1330|consen  343 --AFTSSSMIFGLILFLVGETISWFNWATNNPIF-LEVVPPSRRTTAYALDTVF  393 (493)
T ss_pred             --hhhhHHHHHHHHHHHHHHHHHhccccccccee-eEecCcccccHHHHHHHHH
Confidence              11223344444444444444445666665555 7999999999999999877

>TIGR00896 CynX cyanate transporter

Probab=99.89  E-value=2.6e-21  Score=186.27  Aligned_cols=267  Identities=15%  Similarity=0.115  Sum_probs=195.5

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|+|.++.+++.+.+.++..+++++.|++.||+|||+.+..+..+..++.+.. .+++++.+++.|++.|++.+...
T Consensus        27 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~  105 (355)
T TIGR00896        27 RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIIN  105 (355)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHh
Confidence            45677889999999999999999999999999999999999999998888888877 77899999999999999999888


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ..+.++.|+.| ++|+++.+..+.+..+|..+++.++..+.+... .+||..
T Consensus       106 ~---------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~  156 (355)
T TIGR00896       106 V---------------------------LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQA  156 (355)
T ss_pred             c---------------------------cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHH
Confidence            7                           77777788885 689999999999999999999988877763321 248877


Q ss_pred             H---------------H--------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhH
Q 017823          168 L---------------K--------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLL  212 (365)
Q Consensus       168 f---------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  212 (365)
                      +               +                    .+++..+......+...........|.|.++++.|.++.+.+ 
T Consensus       157 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g-  235 (355)
T TIGR00896       157 LAWWALPALLALLAWIPQVRRRVAANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAG-  235 (355)
T ss_pred             HHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-
Confidence            6               0                    011222222222222233445556688999988899998888 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-CcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhcc
Q 017823          213 MSAIVTGSLGTISTSLSMILADRL-GRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAF  291 (365)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~dr~-grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (365)
                      .......++.++++++.+++.||+ +||+.+..+..+..++.+.+.+..           .....   ....+++++.+.
T Consensus       236 ~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~l~g~~~g~  301 (355)
T TIGR00896       236 SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-----------MHGLW---AWALVLGLGQGG  301 (355)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----------hhHHH---HHHHHHHHhhhh
Confidence            888899999999999999999999 456666677666666665555431           11111   123344444433


Q ss_pred             ccccccccccc-cCCChhhhhHHHHHHHHH
Q 017823          292 SWGPLRWLVPS-ENFPLEIISAGQIITVAA  320 (365)
Q Consensus       292 ~~~~~~~~~~~-e~~p~~~r~~~~~~~~~~  320 (365)
                      ..+ ....... +..+++.+++..++.+..
T Consensus       302 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~  330 (355)
T TIGR00896       302 AFP-LALTLIGLRSRQAAQAAALSAMAQSI  330 (355)
T ss_pred             HhH-HHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            332 2223333 444567778888877665

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.89  E-value=1.1e-21  Score=195.78  Aligned_cols=200  Identities=18%  Similarity=0.135  Sum_probs=167.3

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhhcchhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA--FNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a--~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      ++++|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++..++  .+++.+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            688999999999999999999999999999999999999999999999998887654  568889999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++|+++|++++++...+..+|..+++++...+.+..  .+||..
T Consensus       150 ~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~  200 (465)
T TIGR00894       150 P---------------------------ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMI  200 (465)
T ss_pred             h---------------------------hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCee
Confidence            9                           89999999999999999999999999999999999988877321  268877


Q ss_pred             H---------------------H---------h-------------------------HHHHHHHHHHHHHHhcccccch
Q 017823          168 L---------------------K---------Y-------------------------RLQFVMAILIPFFQHVTRINVI  192 (365)
Q Consensus       168 f---------------------~---------~-------------------------~~~~~~~~~~~~~~~~~~~~~~  192 (365)
                      |                     +         .                         +++..+......+......+..
T Consensus       201 f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (465)
T TIGR00894       201 FYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTIL  280 (465)
T ss_pred             hhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            7                     0         0                         0012233334344444455666


Q ss_pred             hhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcc
Q 017823          193 SFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRK  239 (365)
Q Consensus       193 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  239 (365)
                      ..|.|.++ +..|++..+.+ ....+..++..++.+++|+++||+++|
T Consensus       281 ~~~lp~~l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       281 PTYLPTFISWVLRVSGKENG-LLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHHhCcChHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77889888 45799998888 888888999999999999999998654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.89  E-value=2.7e-21  Score=192.67  Aligned_cols=266  Identities=14%  Similarity=-0.003  Sum_probs=182.5

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhhcchhhhh
Q 017823           12 KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF----NIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus        12 ~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~----~~~~~~~~r~l~G~~~g~~~   87 (365)
                      ++|+++.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+..++++    +++.+++.|++.|++.+...
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~  138 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW  138 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence            78899999999999999999999999999999999999999999999999888763    78889999999999999887


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHH-HHHHHhhhhccccCCcchHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVL-SANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~~~~gwr~  166 (365)
                      +                           .....+.|++|+++|++++++.+.+..+|.. .+++.+.....   ..+||+
T Consensus       139 ~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~gw~~  188 (452)
T PRK11273        139 P---------------------------PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---FNDWHA  188 (452)
T ss_pred             h---------------------------HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hccHHH
Confidence            7                           6677788999999999999999999988864 45544333321   126887


Q ss_pred             HH------------------H---h-------------------------------------HHHHHHHHHHHHHHhccc
Q 017823          167 SL------------------K---Y-------------------------------------RLQFVMAILIPFFQHVTR  188 (365)
Q Consensus       167 ~f------------------~---~-------------------------------------~~~~~~~~~~~~~~~~~~  188 (365)
                      .|                  +   .                                     +++.++...+..+.....
T Consensus       189 ~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  268 (452)
T PRK11273        189 ALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  268 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence            77                  0   0                                     001122222222222233


Q ss_pred             ccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh--CcchHHH-HhHHHHHHHHHHHHHHHhhhc
Q 017823          189 INVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRL--GRKVLFL-VGGIQMLVSRVMIGSIMADQI  264 (365)
Q Consensus       189 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~l~-~~~~~~~i~~~~~~~~~~~~~  264 (365)
                      .+....|.|.++++ .|++..+.. ....+..++.+++.++.|+++||+  +||+... ....+..++.+.+...     
T Consensus       269 ~~~~~~~~P~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-----  342 (452)
T PRK11273        269 RYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-----  342 (452)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-----
Confidence            45566788999965 688888887 777788899999999999999999  4454322 2222222222222111     


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          265 GDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                            .....+...+.....+.... +..+....+..|.+|++.||++.|+.+..
T Consensus       343 ------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  391 (452)
T PRK11273        343 ------PAGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLF  391 (452)
T ss_pred             ------cccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence                  00112222222222222211 11122234457999999999999988765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.89  E-value=5.4e-21  Score=186.09  Aligned_cols=263  Identities=16%  Similarity=0.136  Sum_probs=192.7

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      ++|.|.++.|++.+.+.++..+++++.|+++||+|||+.+..+..+.+++.+..++++|++.++++|++.|++.+...+ 
T Consensus        35 ~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~-  113 (381)
T PRK03633         35 QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWV-  113 (381)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-
Confidence            4567799999999999999999999999999999999999999999999999999999999999999999999998888 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc-CCcchHHHH
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK-VGWGWRISL  168 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~~gwr~~f  168 (365)
                                                .....+.+..|+++|+++.+..+.+..+|..+|+.++..+.+.. ....|+...
T Consensus       114 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  167 (381)
T PRK03633        114 --------------------------VVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGL  167 (381)
T ss_pred             --------------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence                                      66666778888999999999999999999999999988776421 123455433


Q ss_pred             ---------H-------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHH
Q 017823          169 ---------K-------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGS  220 (365)
Q Consensus       169 ---------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  220 (365)
                               .                   .+++.........+...........+.|.++++.|.+++..+ .......+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g-~~~~~~~~  246 (381)
T PRK03633        168 VLAAILPLLFTRILNQQAENHDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIG-FWMALLVS  246 (381)
T ss_pred             HHHHHHHHHHhcccCCCCCCCCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH
Confidence                     0                   001111111111222122233445578988888899888887 77788889


Q ss_pred             HHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccc
Q 017823          221 LGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLV  300 (365)
Q Consensus       221 ~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (365)
                      ..+++++..+++.||+++|+.+..+.....++...+...             ...   .....+.+.+.. ...|.....
T Consensus       247 ~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~---~~~~~l~g~~~~-~~~p~~~~~  309 (381)
T PRK03633        247 AGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ-------------AAM---APALFILGAAGF-TLYPVAMAW  309 (381)
T ss_pred             HHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh-------------HHH---HHHHHHHHHHHH-hHHHHHHHH
Confidence            999999999999999999998887776666655433210             111   112222222222 233444555


Q ss_pred             cccCCChhhhhHHHHHH
Q 017823          301 PSENFPLEIISAGQIIT  317 (365)
Q Consensus       301 ~~e~~p~~~r~~~~~~~  317 (365)
                      ..|..|+++++...+..
T Consensus       310 ~~~~~~~~~~~~~~~~~  326 (381)
T PRK03633        310 ACEKVEHHELVAMNQAL  326 (381)
T ss_pred             HHccCCHHHHHHHHHHH
Confidence            67888887776655553

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=3.8e-21  Score=188.18  Aligned_cols=272  Identities=15%  Similarity=0.082  Sum_probs=197.0

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .++++.|+++.++..+++.++..+++++.|+++||+|||+.+..+..+..++.++..++++++.+++.|++.|++.+...
T Consensus        33 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  112 (401)
T PRK11043         33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAA  112 (401)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHH
Confidence            34567779999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++|++++++..+.......+|..+++.++..+.   +..+||..
T Consensus       113 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~g~~~~  162 (401)
T PRK11043        113 V---------------------------IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL---NHFGWQAI  162 (401)
T ss_pred             H---------------------------HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCChHHH
Confidence            7                           66777899999999999988888888999999999988887   34579987


Q ss_pred             H------------------------H---h--------HHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhH
Q 017823          168 L------------------------K---Y--------RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLL  212 (365)
Q Consensus       168 f------------------------~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  212 (365)
                      +                        +   .        +++.....................+.|.++++.|+++.+.+ 
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-  241 (401)
T PRK11043        163 FATLFAITLLLILPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIG-  241 (401)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHH-
Confidence            7                        0   0        01111111111111122233445567888888899988888 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccc
Q 017823          213 MSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFS  292 (365)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (365)
                      .......++.++++++.+++.||+++|+..........++...+......        ..+..+.......+.+.+.+..
T Consensus       242 ~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  313 (401)
T PRK11043        242 LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSLVPLLIPFCVMAAANGAI  313 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHHHHHHHHHHHHHHHHHH
Confidence            67777788889999999999999999987766555555444433322110        0111222333333444444433


Q ss_pred             cccccccccccCCChhhhhHHHHHHHHH
Q 017823          293 WGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       293 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      . |.......|..| +.|+++.|+.+..
T Consensus       314 ~-~~~~~~~~~~~~-~~~g~~~g~~~~~  339 (401)
T PRK11043        314 Y-PIVVAQALRPFP-QATGKAAALQNTL  339 (401)
T ss_pred             H-HHHHHHHhhhCc-ccChHHHHHHHHH
Confidence            3 333334456666 4789999998877

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.89  E-value=3.3e-21  Score=185.92  Aligned_cols=267  Identities=14%  Similarity=0.126  Sum_probs=186.1

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILV-RSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~-~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      .+++|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++. +..+..++.++.++++|++.+++.|++.|.+.+..
T Consensus        25 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  104 (375)
T TIGR00899        25 SEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTA  104 (375)
T ss_pred             HcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhh
Confidence            45677779999999999999999999999999999999887654 56666777788889999999999999998887777


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchh--hhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAF--NIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~--~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      .+                           ....+..|+.|+++|++.  .+..+.+.++|..+++.++..+.   +..+|
T Consensus       105 ~p---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~---~~~~~  154 (375)
T TIGR00899       105 NP---------------------------QLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA---LGFGF  154 (375)
T ss_pred             HH---------------------------HHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH---Hhccc
Confidence            77                           667777888887777654  57778888999999999988887   34579


Q ss_pred             HHHH------------------H------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCc
Q 017823          165 RISL------------------K------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSE  207 (365)
Q Consensus       165 r~~f------------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~  207 (365)
                      |+.|                  +                  .+++.........+...........+.|.++ ++.|.++
T Consensus       155 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  234 (375)
T TIGR00899       155 TVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPD  234 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCH
Confidence            9888                  0                  0011111111111111222233344566666 5678888


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHH
Q 017823          208 STSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKA  287 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (365)
                      .+.+ ...........++.++.+++.||+|||+.+..+.....+........             ++.+.......+.++
T Consensus       235 ~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~  300 (375)
T TIGR00899       235 KLAG-LMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NSLWALLMLQLLNAI  300 (375)
T ss_pred             HHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence            8887 66666667778889999999999999998877665544443333222             123333333344444


Q ss_pred             hhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          288 GFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       288 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+.. .+....+..|..|++ ++++.++.+..
T Consensus       301 ~~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~  331 (375)
T TIGR00899       301 FIGIL-AGIGMLYFQDLMPGR-AGAATTLYTNT  331 (375)
T ss_pred             HHHHH-HHHHHHHHHHhCcch-hhHHHHHHHHH
Confidence            44333 334445667888765 56888887766

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=2.1e-21  Score=191.37  Aligned_cols=204  Identities=11%  Similarity=0.082  Sum_probs=160.7

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .++++.|.++.++..+++.+++.+++++.|+++||+|||+++..+.+++.++++++++++|++.++++|+++|++.+...
T Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~  122 (413)
T PRK15403         43 VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIA  122 (413)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++|+++|++.+++......+|..+|+.++..+.   +..|||+.
T Consensus       123 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~---~~~gw~~~  172 (413)
T PRK15403        123 T---------------------------VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM---HFVHWKVL  172 (413)
T ss_pred             H---------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHH
Confidence            6                           56677889999999999999999999999999999998877   34579998


Q ss_pred             H----------------------H------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHHHH-cCCC
Q 017823          168 L----------------------K------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLFRT-IKLS  206 (365)
Q Consensus       168 f----------------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~  206 (365)
                      |                      +                  .+++.++..................+.|.++++ .|.+
T Consensus       173 f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s  252 (413)
T PRK15403        173 FAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMT  252 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCC
Confidence            8                      0                  011122222222232233344455567878755 5899


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHH
Q 017823          207 ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLF  242 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l  242 (365)
                      +.+.+ ........+..+++.+.+.+.+|..+++..
T Consensus       253 ~~~~g-l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  287 (413)
T PRK15403        253 TSQFA-WTQVPVFGAVIVANAIVARFVKDPTEPRFI  287 (413)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhccCCchhHH
Confidence            88888 666667777788777777766554444443

>TIGR00897 2A0118 polyol permease family

Probab=99.89  E-value=6e-21  Score=187.24  Aligned_cols=270  Identities=13%  Similarity=0.050  Sum_probs=190.2

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---H-hhhHHHHHHHHHHhhcchh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG---A-AFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~-a~~~~~~~~~r~l~G~~~g   84 (365)
                      +++|.|+++.+++.+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..   + .++++.+++.|++.|++.+
T Consensus        41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~  120 (402)
T TIGR00897        41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP  120 (402)
T ss_pred             HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence            35677899999999999999999999999999999999999999999988876553   3 2578889999999999988


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHH-HHHHHHhhhhccccCCcc
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAV-LSANLLNYGTQKIKVGWG  163 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~~g  163 (365)
                      ...+                           .....+.|+.|+|+|++++++.+.+.++|. .+++.++..+.+   ..|
T Consensus       121 ~~~~---------------------------~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~---~~g  170 (402)
T TIGR00897       121 LFAY---------------------------SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP---AFG  170 (402)
T ss_pred             HHHh---------------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccc
Confidence            8777                           667778899999999999999999999996 578888766552   234


Q ss_pred             -----hHHHH-------------Hh------------------------HHHHHHHHHHHHHHhcccccchhhcHHHHHH
Q 017823          164 -----WRISL-------------KY------------------------RLQFVMAILIPFFQHVTRINVISFYAPVLFR  201 (365)
Q Consensus       164 -----wr~~f-------------~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (365)
                           |+..+             +.                        +++..+......+...........|.|.+.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  250 (402)
T TIGR00897       171 EMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVA  250 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 44443             00                        0111222222222223345566678899998


Q ss_pred             HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHH-HhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHH
Q 017823          202 TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFL-VGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILV  280 (365)
Q Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (365)
                      +.|+++.+.. .......++..++++..|+++||++||+.+. .+.+...+....+......        ..+..+...+
T Consensus       251 ~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~~~~  321 (402)
T TIGR00897       251 ELGFSTSEWL-QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHSFAVALI  321 (402)
T ss_pred             HcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCcHHHHHH
Confidence            8999998887 7778888999999999999999999988764 2333333333333222100        0112233333


Q ss_pred             HHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          281 LICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ...+.+.+.+. ..+... ...|..| ++|+++.|+.+..
T Consensus       322 ~~~~~G~~~~~-~~~~~~-~~~~~~~-~~~g~~~g~~~~~  358 (402)
T TIGR00897       322 IAIALGIFLAG-YVPLAA-VFPTLAP-KHKGAAMSVLNLS  358 (402)
T ss_pred             HHHHHHHHHHH-HHHHHH-HHHhhCc-chhHHHHHHHHHH
Confidence            44444444432 334433 3467655 5899999998877

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.88  E-value=1.3e-21  Score=195.22  Aligned_cols=266  Identities=12%  Similarity=0.053  Sum_probs=193.4

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHhhcchhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIF-GRVLLGVGIGFAN   87 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~-~r~l~G~~~g~~~   87 (365)
                      +++|.|.++.+++.+.+.++..++.++.|+++||+|||+.++.+.++..+++++++++++++.+++ .|++.|++.+...
T Consensus        47 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~  126 (455)
T TIGR00892        47 QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNF  126 (455)
T ss_pred             HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhh
Confidence            567777999999999999999999999999999999999999999999999999999999998875 5789999998776


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|++| ++|+++.++.+.+..+|..++++++..+.   +.+|||+.
T Consensus       127 ~---------------------------~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~---~~~gwr~~  175 (455)
T TIGR00892       127 Q---------------------------PSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF---ESFGWRGS  175 (455)
T ss_pred             h---------------------------HHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH---HHhChHHH
Confidence            6                           56667788885 78999999999999999999999988776   34579988


Q ss_pred             H------------------H--hH----------------------------------------HHHHHHHHHHHHHhcc
Q 017823          168 L------------------K--YR----------------------------------------LQFVMAILIPFFQHVT  187 (365)
Q Consensus       168 f------------------~--~~----------------------------------------~~~~~~~~~~~~~~~~  187 (365)
                      |                  +  ..                                        ++.+.......+....
T Consensus       176 f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (455)
T TIGR00892       176 FLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFL  255 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHH
Confidence            8                  0  00                                        0001111111222222


Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh--CcchHHHHhH--HHHHHHHHHHHHHHhhh
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRL--GRKVLFLVGG--IQMLVSRVMIGSIMADQ  263 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~l~~~~--~~~~i~~~~~~~~~~~~  263 (365)
                      .......+.|.+.++.|+++.+.+ ....+.+++.++++++.++++||.  ++|+......  ....++.+.....    
T Consensus       256 ~~~~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----  330 (455)
T TIGR00892       256 GFFAPIIFLVPYAKDKGVDEYEAA-FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA----  330 (455)
T ss_pred             HccchHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            334445677888888899998888 888889999999999999999974  3343333322  2222222222211    


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          264 IGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                               ++.+..++...+.+++.+... +....+..|.+|+++++++.|+.+..
T Consensus       331 ---------~~~~~~~i~~~~~G~~~g~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~  377 (455)
T TIGR00892       331 ---------GDYTGLVIYCIFFGLSFGSVG-ALLFEVLMDLVGAQRFSSAVGLVTIV  377 (455)
T ss_pred             ---------chHHHHHHHHHHHHHHhchHH-HHHHHHHHHHhhHHHHhhHHhHHHHH
Confidence                     123344444555555554333 34455668999999999999998877

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=1.2e-20  Score=191.31  Aligned_cols=289  Identities=19%  Similarity=0.159  Sum_probs=208.6

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +....+.....+..+++++|..+|+++.|+++||+|||++++.+.++..++.+.+++++|++.+++.|++.|++.+....
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            34455678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|+.++|+|+.+..+ ......+..+++..+.++..     +||+.+
T Consensus       191 ---------------------------~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~  237 (521)
T KOG0255|consen  191 ---------------------------VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLF  237 (521)
T ss_pred             ---------------------------HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHH
Confidence                                       899999999999999999999 55555555555555555542     588887


Q ss_pred             --------------------------------------------------------------------------------
Q 017823          169 --------------------------------------------------------------------------------  168 (365)
Q Consensus       169 --------------------------------------------------------------------------------  168 (365)
                                                                                                      
T Consensus       238 ~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  317 (521)
T KOG0255|consen  238 WIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRT  317 (521)
T ss_pred             HHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcC
Confidence                                                                                            


Q ss_pred             -HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHH
Q 017823          169 -KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI  247 (365)
Q Consensus       169 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~  247 (365)
                       +.+++........+       .....|....+...+++.+..  ......+....++....+...|++|||.....+..
T Consensus       318 ~~l~~~~~~~~~~~~-------~~~~~y~gl~~~~~~lg~~~~--~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~  388 (521)
T KOG0255|consen  318 PRLRYRTLYLLFIWF-------VFSLVYYGLSLNVSGLGGNIY--LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLF  388 (521)
T ss_pred             HHHHHHHHHHHHHHH-------HHhHHHHhhhhhhhhcCchHH--HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHH
Confidence             01111111111110       000011111111122222222  34555566888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH-------
Q 017823          248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA-------  320 (365)
Q Consensus       248 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-------  320 (365)
                      ...++.+..++....          ...+...+...+..++.+.++... +.+.+|++|+..|..+.+..+..       
T Consensus       389 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~  457 (521)
T KOG0255|consen  389 LAGIGLLLFGWLPDD----------LGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSIL  457 (521)
T ss_pred             HHHHHHHHHHHhhcc----------chhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999887411          111234444444555555566666 78889999999999999999888       


Q ss_pred             -----------------HHHH----HHHHHHHhhcccCCCCChHHHHHHHc
Q 017823          321 -----------------GVFF----FLTTFMHFFLPETKNVPIELMDKCWR  350 (365)
Q Consensus       321 -----------------~~f~----~~~~~~~~~~~et~~~~~~~~~~~~~  350 (365)
                                       ..+.    +.+.+..+++|||+++++.+..++.+
T Consensus       458 ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  458 APLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence                             1111    13444558899999998866555444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=2.1e-21  Score=181.19  Aligned_cols=264  Identities=17%  Similarity=0.175  Sum_probs=206.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      ..++.+..+..+++...+.+..+++-.+|.++|++|||+.+.+......+...+.+.++|+..+.+.|.+.|+|.|+ .|
T Consensus       106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~p  184 (528)
T KOG0253|consen  106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LP  184 (528)
T ss_pred             hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-cc
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999 67


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ...++-.|..|..+|...+-.. ..+.+|.+....+.....   .+.|||+..
T Consensus       185 ---------------------------v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm---~~~gwr~~l  233 (528)
T KOG0253|consen  185 ---------------------------VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM---SNFGWRYLL  233 (528)
T ss_pred             ---------------------------HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH---HhhhHHHHH
Confidence                                       5566668999999999887777 899999999999998887   445788776


Q ss_pred             --------------------------------------------------------------------------------
Q 017823          169 --------------------------------------------------------------------------------  168 (365)
Q Consensus       169 --------------------------------------------------------------------------------  168 (365)
                                                                                                      
T Consensus       234 ~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~r  313 (528)
T KOG0253|consen  234 FTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVR  313 (528)
T ss_pred             HHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccc
Confidence                                                                                            


Q ss_pred             ---------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHc--------------------CCCcchhhHHHHHHHH
Q 017823          169 ---------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTI--------------------KLSESTSLLMSAIVTG  219 (365)
Q Consensus       169 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~~  219 (365)
                               +.|+..+....+++...+. ++......+.+++..                    ..+...-. .-..+..
T Consensus       314 g~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dY-rdllits  391 (528)
T KOG0253|consen  314 GGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDY-RDLLITS  391 (528)
T ss_pred             cchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHH-HHHHHHH
Confidence                     4566666666665555443 233333333333211                    11222223 5677888


Q ss_pred             HHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhcccccccccc
Q 017823          220 SLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWL  299 (365)
Q Consensus       220 ~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (365)
                      +...+|.++.+.+.||+|||+.+..+.+++++..+++....             ......+..+..-++...++.. .+.
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-------------~rn~~tvllf~arafisg~fqv-aYv  457 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-------------TRNAYTVLLFTARAFISGAFQV-AYV  457 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-------------CcchhHHHHHHHHHHHhchheE-EEE
Confidence            99999999999999999999999999999998888877652             1122334444444555555554 489


Q ss_pred             ccccCCChhhhhHHHHHHHHH
Q 017823          300 VPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       300 ~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      |++|++|+..|+++.|.+..+
T Consensus       458 YtPEVyPTavRatgvGtcSsm  478 (528)
T KOG0253|consen  458 YTPEVYPTAVRATGVGTCSSM  478 (528)
T ss_pred             ecCcccchhhhhcchhhhhhH
Confidence            999999999999999999988

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.87  E-value=8.9e-21  Score=188.18  Aligned_cols=271  Identities=14%  Similarity=-0.003  Sum_probs=184.9

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHhhcchhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA----FNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a----~~~~~~~~~r~l~G~~~g~~   86 (365)
                      .|+|+++.+++.+++.++..+++++.|+++||+|||+.+..+..+.+++.++.++.    ++++.+.+.|++.|++.|..
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~  135 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG  135 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence            47889999999999999999999999999999999999999999999988887664    46778889999999999988


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                      .+                           .....+.|++|+++|++++++.+.+..+|..+++.+......  ...+||.
T Consensus       136 ~~---------------------------~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~~w~~  186 (438)
T TIGR00712       136 WP---------------------------PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA--WFNDWHA  186 (438)
T ss_pred             hH---------------------------HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH--HhhhhHH
Confidence            88                           777888999999999999999999999999988877654332  1246988


Q ss_pred             HH---------------------HhH---------------------------H----------HHHHHHHHHHHHhccc
Q 017823          167 SL---------------------KYR---------------------------L----------QFVMAILIPFFQHVTR  188 (365)
Q Consensus       167 ~f---------------------~~~---------------------------~----------~~~~~~~~~~~~~~~~  188 (365)
                      .|                     +..                           +          +..+......+.....
T Consensus       187 ~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (438)
T TIGR00712       187 ALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLL  266 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            88                     000                           0          0011111222222223


Q ss_pred             ccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          189 INVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       189 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      ......|.|.++++ .|+++.+++ ....+..+.+++++++.++++||+++++....+.....+..+...... ..    
T Consensus       267 ~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~----  340 (438)
T TIGR00712       267 RYGVLDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-MN----  340 (438)
T ss_pred             HHHHHHhHHHHHHHccCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-hc----
Confidence            34566788888865 688888888 778888899999999999999999654322223222222111111110 00    


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                         +....+.........+.+. .+..........|.+|++.|+++.|+.+..
T Consensus       341 ---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  389 (438)
T TIGR00712       341 ---PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLF  389 (438)
T ss_pred             ---CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchH
Confidence               0011122222222222221 111112123457999999999999988655

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.86  E-value=2.9e-20  Score=178.90  Aligned_cols=279  Identities=10%  Similarity=0.051  Sum_probs=193.4

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHH-HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-----GRKASI-LVRSTAFLAGSALRGAA---FNIYMLIFGRVLL   79 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-----Grk~~l-~~~~~~~~~~~~~~~~a---~~~~~~~~~r~l~   79 (365)
                      ++.|+|.++.++.... .+...+ .+++|+++||+     ||||.+ +.+..+.++.....++.   .+.+.+....++.
T Consensus        16 ~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~   93 (356)
T TIGR00901        16 RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLI   93 (356)
T ss_pred             HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence            4567789999999655 455555 99999999998     899975 56777777776677776   4566777778888


Q ss_pred             hcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc
Q 017823           80 GVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK  159 (365)
Q Consensus        80 G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  159 (365)
                      +.+.+...+                           ...+++.|+.|+|+|++++++...+..+|.++++.++..+....
T Consensus        94 ~~~~~~~~~---------------------------~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  146 (356)
T TIGR00901        94 AFFSATQDI---------------------------ALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE  146 (356)
T ss_pred             HHHHHHHHH---------------------------HHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            888888878                           88889999999999999999999999999999999987776332


Q ss_pred             C-----CcchHHHH------------------Hh-----------------------HHHH---HHHHHHHHHHhccccc
Q 017823          160 V-----GWGWRISL------------------KY-----------------------RLQF---VMAILIPFFQHVTRIN  190 (365)
Q Consensus       160 ~-----~~gwr~~f------------------~~-----------------------~~~~---~~~~~~~~~~~~~~~~  190 (365)
                      .     .++||..|                  +.                       +++.   ........+.......
T Consensus       147 g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (356)
T TIGR00901       147 FANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDS  226 (356)
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            2     23499988                  00                       0000   1222222222233444


Q ss_pred             chhhcHHHHHHHcCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCC
Q 017823          191 VISFYAPVLFRTIKLSESTSLLMSAIVTG-SLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG  269 (365)
Q Consensus       191 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  269 (365)
                      ....+.|.++++.|+++++.+ ......+ +..+++.++++++.||+|||+.+..+.++..+....+.......  .+.+
T Consensus       227 ~~~~~~~~~l~~~g~~~~~~g-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~  303 (356)
T TIGR00901       227 AATVLTTLFLLDMGFSKEEIA-LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNG--HHDG  303 (356)
T ss_pred             HHHHHHHHHHHHcCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC--cccc
Confidence            555677888877899888877 5555544 57789999999999999999998888777766655544431000  0000


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.+..+....+..+.+++.+....+. ..+..|.+|+++|++.+|+.+..
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~  353 (356)
T TIGR00901       304 ITFPHLLMLFLTITLEAVTGGLGTVAF-VAFLSKLSNPKFGATQMALLSSL  353 (356)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhcCCCccHHHHHHHHHH
Confidence            001223334444444455554444444 56669999999999999988754

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.86  E-value=2.8e-20  Score=182.14  Aligned_cols=260  Identities=10%  Similarity=0.017  Sum_probs=185.3

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      +++.++.+.+++.+.+.+++.+.+++.|+++||+|||++++.+..+..++++.+.++.++   ++.|+++|++.+...| 
T Consensus        32 ~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~p-  107 (393)
T PRK11195         32 ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSP-  107 (393)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-
Confidence            455668899999999999999999999999999999999999999999998888777664   7889999999999999 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH-
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL-  168 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f-  168 (365)
                                                ...+++.|++|+++|++++++.+....+|.++||.+++.+.+.    .|+..+ 
T Consensus       108 --------------------------a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~  157 (393)
T PRK11195        108 --------------------------AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALA  157 (393)
T ss_pred             --------------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence                                      9999999999999999999999999999999999988776531    122222 


Q ss_pred             -------------------------------------------HhHHHHHH-HHHHHHHHhcccccchhhcHHHHH-HHc
Q 017823          169 -------------------------------------------KYRLQFVM-AILIPFFQHVTRINVISFYAPVLF-RTI  203 (365)
Q Consensus       169 -------------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~  203 (365)
                                                                 ..+++... ......+. ........+..|.+. +..
T Consensus       158 i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  236 (393)
T PRK11195        158 VCALIYLLAALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLF-WGAGATLRFLVLAWAPVAL  236 (393)
T ss_pred             HHHHHHHHHHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence                                                       00011111 11111111 111222333445555 457


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHH
Q 017823          204 KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLIC  283 (365)
Q Consensus       204 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (365)
                      |.++.+.+ ......+++.+++++..+++.||.++|+.+..+. ...+..+.+...             +..+.......
T Consensus       237 g~s~~~~G-~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------------~~~~~~~~~~~  301 (393)
T PRK11195        237 GITLNQPA-YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------------HSLLPAYPLLI  301 (393)
T ss_pred             CCChhHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------------hHHHHHHHHHH
Confidence            89999988 8889999999999999999999999888776664 333332222221             22333344444


Q ss_pred             HHHHhhccccccccccccccCCChhh-hhHHHHHHHHH
Q 017823          284 VYKAGFAFSWGPLRWLVPSENFPLEI-ISAGQIITVAA  320 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~  320 (365)
                      +.+.+.+....+.. ....|..|++. +|++.++.+..
T Consensus       302 ~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~  338 (393)
T PRK11195        302 LIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFN  338 (393)
T ss_pred             HHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHH
Confidence            55555554444543 44467666654 78888888777

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=2.2e-20  Score=185.59  Aligned_cols=267  Identities=12%  Similarity=0.085  Sum_probs=191.8

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHhhcchh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALR---GAAFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~a~~~~~~~~~r~l~G~~~g   84 (365)
                      +++++.|+.+.++..+.+.+++.+++++.|++.||+|||+++..+..++.++.+++   .++++++.++++|+++|+|.|
T Consensus        53 ~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g  132 (438)
T PRK10133         53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG  132 (438)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            45667779999999999999999999999999999999999999999999999875   467899999999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc-cc----
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK-IK----  159 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~----  159 (365)
                      ...+                           ....++.|..|+++|.+.++..+....+|..+++.++..+.. ..    
T Consensus       133 ~~~~---------------------------~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~  185 (438)
T PRK10133        133 CLET---------------------------AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS  185 (438)
T ss_pred             HHHh---------------------------hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            9999                           888888888777777778899999999999999988765431 10    


Q ss_pred             ------------CC------cchHHHH-------------------------Hh----------------HHHHHHHHHH
Q 017823          160 ------------VG------WGWRISL-------------------------KY----------------RLQFVMAILI  180 (365)
Q Consensus       160 ------------~~------~gwr~~f-------------------------~~----------------~~~~~~~~~~  180 (365)
                                  ..      .+||..|                         +.                +++......+
T Consensus       186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l  265 (438)
T PRK10133        186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVL  265 (438)
T ss_pred             hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHhCchHHHHHH
Confidence                        00      1456555                         00                0111111222


Q ss_pred             HHHHhcccccchhhcHHHHH-H-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHH
Q 017823          181 PFFQHVTRINVISFYAPVLF-R-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGS  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~  258 (365)
                      ..+...........|.+.++ + ..|+++.+.+ .......++.++++.+++++.||+|+|+.+..+..+..+..+....
T Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag-~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~  344 (438)
T PRK10133        266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF  344 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            22222223333444666664 4 4699999999 8999999999999999999999999999988876666555444332


Q ss_pred             HHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHH
Q 017823          259 IMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITV  318 (365)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  318 (365)
                      .           + . . .......+.+++.+..+++. .....|..|++ .+++.++..
T Consensus       345 ~-----------~-~-~-~~~~~~~l~glg~~~i~P~~-~s~a~~~~~~~-~~~as~l~~  388 (438)
T PRK10133        345 A-----------G-G-H-VGLIALTLCSAFMSIQYPTI-FSLGIKNLGQD-TKYGSSFIV  388 (438)
T ss_pred             c-----------C-C-h-HHHHHHHHHHHHHHHHHHHH-HHHHHcccchh-hccchhHHh
Confidence            2           1 1 1 12334445556665555544 55556777664 455555554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.86  E-value=4.1e-20  Score=180.60  Aligned_cols=257  Identities=18%  Similarity=0.115  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhc
Q 017823           18 LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFS   97 (365)
Q Consensus        18 ~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~   97 (365)
                      .+++.+++.++..+++++.|+++||+|||+.+..+..+..++.++..++++++.+++.|++.|++.+ ..+         
T Consensus        56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~---------  125 (408)
T PRK09874         56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVP---------  125 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHH---------
Confidence            5889999999999999999999999999999999999999999999999999999999999999755 445         


Q ss_pred             ccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH---------
Q 017823           98 QTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL---------  168 (365)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f---------  168 (365)
                                        ....++.|..|+++|+++++..+.+..+|..+++.++..+.+   ..+||..+         
T Consensus       126 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~  184 (408)
T PRK09874        126 ------------------NANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD---SYGLRPVFFITASVLFL  184 (408)
T ss_pred             ------------------hHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHH
Confidence                              566677899999999999999999999999999999988763   35688776         


Q ss_pred             ---------H---------h------------HHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcch----hhHHH
Q 017823          169 ---------K---------Y------------RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSEST----SLLMS  214 (365)
Q Consensus       169 ---------~---------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~  214 (365)
                               +         .            +++.....................+.|.+.++.+.+..+    .+ ..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~  263 (408)
T PRK09874        185 CFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISG-MI  263 (408)
T ss_pred             HHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HH
Confidence                     0         0            011111111111111112223334456666554333322    22 44


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccc
Q 017823          215 AIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWG  294 (365)
Q Consensus       215 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (365)
                      ..+.+++.+++.+..++++||++||+.+..+.....+..+.....             +..+...+...+.+++.+... 
T Consensus       264 ~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~-  329 (408)
T PRK09874        264 ASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQLGILRFLLGAADGALL-  329 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHhhhHhhH-
Confidence            556677888889999999999999999888877666555544432             112333344444455444333 


Q ss_pred             cccccccccCCChhhhhHHHHHHHHH
Q 017823          295 PLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       295 ~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.......+..|++.|++..++.+..
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (408)
T PRK09874        330 PAVQTLLVYNSSNQIAGRIFSYNQSF  355 (408)
T ss_pred             HHHHHHHHHhCCcccceeeehHHHHH
Confidence            33334446778888889888876655

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.86  E-value=3.4e-20  Score=182.64  Aligned_cols=269  Identities=13%  Similarity=0.061  Sum_probs=198.6

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhhcchh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA---FNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a---~~~~~~~~~r~l~G~~~g   84 (365)
                      +++++.|+.+.|++.+.+++++.+++++.|++.||+|||+.+..+..+++++.++...+   ++++.+++.|++.|+|.|
T Consensus        30 ~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g  109 (410)
T TIGR00885        30 QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLG  109 (410)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHH
Confidence            45667779999999999999999999999999999999999999999999999886543   589999999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc-----
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK-----  159 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----  159 (365)
                      ...+                           ....++.+..|+++|++..++.+...++|..+++.++..+....     
T Consensus       110 ~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885       110 FLET---------------------------AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHh---------------------------hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            9999                           88889999999999999999999999999999999987664221     


Q ss_pred             ------------------CCcchHHHH-------------------H-----------h--------H-HHHHHHHHHHH
Q 017823          160 ------------------VGWGWRISL-------------------K-----------Y--------R-LQFVMAILIPF  182 (365)
Q Consensus       160 ------------------~~~gwr~~f-------------------~-----------~--------~-~~~~~~~~~~~  182 (365)
                                        +..+||.+|                   +           .        + ++....... .
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~  241 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIA-Q  241 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHHHHhChhHHHHHHH-H
Confidence                              123699887                   0           0        0 122222222 3


Q ss_pred             HHhcccccchhhcHHHHHHHcC--CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHH
Q 017823          183 FQHVTRINVISFYAPVLFRTIK--LSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIM  260 (365)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~  260 (365)
                      +...........|.+.+.++.+  .+..... ...........+|+++++++.||+++|+.+.++.....+..+......
T Consensus       242 f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~  320 (410)
T TIGR00885       242 FFYVGVQIMCWTFIIQYAVRLIPGMTAGFAA-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG  320 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333344445566777776543  3333334 455566678899999999999999999998888777777766665531


Q ss_pred             hhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          261 ADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                                  +  ........+.+++.+..+ |..+....+..+++.+..+.++..+.
T Consensus       321 ------------~--~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~  365 (410)
T TIGR00885       321 ------------G--HVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI  365 (410)
T ss_pred             ------------C--hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence                        1  122344444445555566 55577778888887765555555544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=4.9e-20  Score=183.17  Aligned_cols=270  Identities=15%  Similarity=0.118  Sum_probs=209.4

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhcchhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF--NIYMLIFGRVLLGVGIGF   85 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~--~~~~~~~~r~l~G~~~g~   85 (365)
                      +.++++|+++.+++.++++.|+.+++++.|++.||+|-|+++..+.++.++++++...+.  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            457999999999999999999999999999999999999999999999999999999884  456889999999999999


Q ss_pred             hhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchH
Q 017823           86 ANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWR  165 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr  165 (365)
                      .+|                           ....+.++|+|+++|++..++...+..+|.+++.++++.+.+.  ..||+
T Consensus       145 ~~p---------------------------a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~  195 (466)
T KOG2532|consen  145 LFP---------------------------AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWP  195 (466)
T ss_pred             HHh---------------------------hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCc
Confidence            999                           9999999999999999999999999999999999999988844  27899


Q ss_pred             HHH-------------------------------------------------------HhHHHHHHHHHHHHHHhccccc
Q 017823          166 ISL-------------------------------------------------------KYRLQFVMAILIPFFQHVTRIN  190 (365)
Q Consensus       166 ~~f-------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  190 (365)
                      ..|                                                       -.+.+.++.+.+..+.+..+..
T Consensus       196 sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~  275 (466)
T KOG2532|consen  196 SIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFY  275 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            998                                                       1122456666677777777888


Q ss_pred             chhhcHHHHHH-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcc---------hHHHHhHHHHHHHHHHHHHHH
Q 017823          191 VISFYAPVLFR-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRK---------VLFLVGGIQMLVSRVMIGSIM  260 (365)
Q Consensus       191 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr---------~~l~~~~~~~~i~~~~~~~~~  260 (365)
                      .+..|.|.|++ .+|++..+.+ +...+..+...+..+++|.++||+.+|         ..-.++....++.++.+++. 
T Consensus       276 ~l~~y~PtY~~~VL~f~v~~~G-~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-  353 (466)
T KOG2532|consen  276 LLLTYLPTYLKEVLGFDVRETG-FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-  353 (466)
T ss_pred             HHHHHhhHHHHHHhCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-
Confidence            99999999995 5799999999 999999999999999999999998662         12234444444555544443 


Q ss_pred             hhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          261 ADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                                +....+..++++.+.....+...+.. +.-..+. -+++-+...|+.+..
T Consensus       354 ----------~~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~-apq~a~~l~g~~~~~  401 (466)
T KOG2532|consen  354 ----------SDEHRLLAVILLTIAIGLSGFNISGF-YKNHQDI-APQHAGFVMGIINFV  401 (466)
T ss_pred             ----------CCCcchHHHHHHHHHHHHcccchhhh-Hhhhhhc-cchHHHHHHHHHHHH
Confidence                      11122333333333222222222221 1111222 445678888888887

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.86  E-value=1.1e-19  Score=177.76  Aligned_cols=265  Identities=15%  Similarity=0.130  Sum_probs=170.6

Q ss_pred             CccccCCchHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYI-AGLIASLFASSVTRAFGRKASI-LVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGF   85 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i-~~~i~~~~~g~l~dr~Grk~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~   85 (365)
                      .++++.|.++.|++.+...+ +..++.++.+. .||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+.
T Consensus        43 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  121 (393)
T PRK15011         43 TDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGST  121 (393)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45667779999999877655 55555555555 9999999875 456666677788888999999887766655544456


Q ss_pred             hhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCc--chhhhHHHHHHHHHHHHHHHHhhhhccccCCcc
Q 017823           86 ANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNR--GAFNIGFQVCVATAVLSANLLNYGTQKIKVGWG  163 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~g  163 (365)
                      ..+                           ....+..|+.|+++|  +..++..+.+.++|.+++++++..+.   +..|
T Consensus       122 ~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~---~~~g  171 (393)
T PRK15011        122 ANP---------------------------QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA---MGFS  171 (393)
T ss_pred             hHH---------------------------HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH---HhcC
Confidence            666                           666677777666555  34557888899999999999999887   3457


Q ss_pred             hHHHH------------------H------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCC
Q 017823          164 WRISL------------------K------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLS  206 (365)
Q Consensus       164 wr~~f------------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~  206 (365)
                      ||..|                  +                  .++..+......... .........+.|.++ ++.|.+
T Consensus       172 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~l~~~~~~~  250 (393)
T PRK15011        172 FTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTLEAPRRNRRDTLLLFVICTLM-WGTNSLYIINMPLFIINELHLP  250 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccccccccccccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC
Confidence            99988                  0                  001112222222222 223333445677777 557888


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHH
Q 017823          207 ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYK  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (365)
                      +.+.+ .......+..+++.++.|+++||++||+.+..+.....+........             +..+..+....+..
T Consensus       251 ~~~~g-~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~l~~  316 (393)
T PRK15011        251 EKLAG-VMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-------------HSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHH
Confidence            88877 66666677788899999999999999998776655444433322211             11222222222222


Q ss_pred             HhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       287 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +..+...+.. ..+..|.+|++ |+++.++.+..
T Consensus       317 ~~~g~~~~~~-~~~~~~~~p~~-~g~~~~~~~~~  348 (393)
T PRK15011        317 IYIGILGGIG-MLYFQDLMPGQ-AGSATTLYTNT  348 (393)
T ss_pred             HHHHHHHHHH-HHHHHHhCCCC-cchHHHHHHHH
Confidence            2222222222 34457888864 88888887665

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.85  E-value=6.4e-20  Score=180.07  Aligned_cols=267  Identities=14%  Similarity=0.144  Sum_probs=193.6

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .++.|.|+.+.|.+.+...+...+.+++.|+++||+|||+.+..+.++..++.+...++++++.+++.|++.|++.+...
T Consensus        38 ~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~  117 (400)
T PRK11646         38 VDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFD  117 (400)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ...+++.|..|+++|++++++.+....+|..+|+.+++.+.+    ++||..
T Consensus       118 ~---------------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~  166 (400)
T PRK11646        118 P---------------------------PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLV  166 (400)
T ss_pred             H---------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHH
Confidence            8                           778888999999999999999999999999999999988862    468887


Q ss_pred             H------------------Hh------------------HHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhh
Q 017823          168 L------------------KY------------------RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSL  211 (365)
Q Consensus       168 f------------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  211 (365)
                      |                  +.                  +++.........+...........+.|.+.++.+.++.+.+
T Consensus       167 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g  246 (400)
T PRK11646        167 CATGAVLFVLAAAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVK  246 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccccccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHH
Confidence            7                  00                  00111111111111111112234567888877666766666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhc
Q 017823          212 LMSAIVTGSLGTISTSLSMILAD-RLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFA  290 (365)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (365)
                       .......+....+....+++.| |++.++.+..+..+..++.+.+...             +..+...+...+++.+..
T Consensus       247 -~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~l~~~g~~  312 (400)
T PRK11646        247 -WMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------------SNLQQLFTLICLFYIGSI  312 (400)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHH
Confidence             6666666666655555566655 4666666666766666666555443             112233333344444443


Q ss_pred             cccccccccccccCCChhhhhHHHHHHHHH
Q 017823          291 FSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       291 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .. .|....+..|..|++.|++++|+.+..
T Consensus       313 ~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~  341 (400)
T PRK11646        313 IA-EPARETLSASLADARARGSYMGFSRLG  341 (400)
T ss_pred             HH-HccHHHHHHhcCCcccchhhhhHHHHH
Confidence            33 333345668999999999999988776

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.85  E-value=7.5e-20  Score=174.57  Aligned_cols=273  Identities=16%  Similarity=0.118  Sum_probs=209.2

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHhhcch
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNI---YMLIFGRVLLGVGI   83 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~---~~~~~~r~l~G~~~   83 (365)
                      +++++++|+.|.+++.++..+..++..++.|.+.||+|.|+....++.+..+-++..+++.+.   +++++++.+.|++.
T Consensus        40 i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G  119 (417)
T COG2223          40 IKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG  119 (417)
T ss_pred             hccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc
Confidence            447788889999999999999999999999999999999999999999999999999998544   59999999999984


Q ss_pred             hhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcc
Q 017823           84 GFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWG  163 (365)
Q Consensus        84 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~g  163 (365)
                      + .+.                           +...++++++||+++|.++++.. ..++|..+...++..+..   ..+
T Consensus       120 a-sFa---------------------------v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~---~~g  167 (417)
T COG2223         120 A-SFA---------------------------VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV---AFG  167 (417)
T ss_pred             c-eeh---------------------------cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH---HHh
Confidence            4 455                           68888999999999999999998 777777777766666552   223


Q ss_pred             ---hHHHH-------------------------------H-------hHHHHHHHHHHHHHHhcccccchhhcHHHHH-H
Q 017823          164 ---WRISL-------------------------------K-------YRLQFVMAILIPFFQHVTRINVISFYAPVLF-R  201 (365)
Q Consensus       164 ---wr~~f-------------------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  201 (365)
                         ||...                               +       .+++-.+.+....+..+.++..++.+.|.++ +
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~  247 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT  247 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               66554                               1       1122233333444444667778888999998 6


Q ss_pred             HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHH
Q 017823          202 TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVL  281 (365)
Q Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (365)
                      +++.++.+++ .......+.+.+.++++|+++||+|.+|........++++..........      .....+.......
T Consensus       248 ~fg~~~~~Ag-~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~  320 (417)
T COG2223         248 QFGLSPVTAG-LIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG------FGHGGSFVVFVAV  320 (417)
T ss_pred             hcCCChhhHH-HHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc------cccCcchHHHHHH
Confidence            6899999998 88999999999999999999999999999999998888888877765311      0011233444444


Q ss_pred             HHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          282 ICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ........+.+-+.+ +-+++..+|. +.|...|+..++
T Consensus       321 ~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~  357 (417)
T COG2223         321 FLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAI  357 (417)
T ss_pred             HHHHHHHhccCcchh-eeechHHHHh-hhhHHHHHHHHh
Confidence            444455556665555 4444666666 557778888877

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.85  E-value=1.8e-19  Score=175.90  Aligned_cols=270  Identities=16%  Similarity=0.159  Sum_probs=187.4

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..++++++.+++.|++.|++.+...
T Consensus        35 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  114 (394)
T PRK11652         35 ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGG  114 (394)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....+..|..++++|+++++..+.+..+|..+++.++..+.   +..+||..
T Consensus       115 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~g~~~~  164 (394)
T PRK11652        115 V---------------------------MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT---TLFGWRAC  164 (394)
T ss_pred             H---------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccChHHH
Confidence            7                           66677788899999999999999999999999999988876   34579988


Q ss_pred             H------------------H-------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHHHH-cCCCcch
Q 017823          168 L------------------K-------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLFRT-IKLSEST  209 (365)
Q Consensus       168 f------------------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~  209 (365)
                      +                  +                   .+++.........+...........+.+.++++ .|.++.+
T Consensus       165 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  244 (394)
T PRK11652        165 YLFLLLLGAGVTFSMARWMPETRPADARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMT  244 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCccccchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHH
Confidence            7                  0                   001111111111222122233333345556654 7888887


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhh
Q 017823          210 SLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGF  289 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (365)
                      .+ .......++..++..+.+++.||.+++....  .....+..+.+......        ...+.+.......+.+.+.
T Consensus       245 ~~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        245 VS-ILFILPIPAAFFGAWFAGRPNKRFSTLMWQS--VICCLLAGLLMWIPGWF--------GVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHHHH
Confidence            77 6667777778888888888888887433222  22222222222111100        0112333444445555555


Q ss_pred             ccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          290 AFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       290 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +... |.......|.+| +.++++.++.+..
T Consensus       314 ~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~  342 (394)
T PRK11652        314 GMLF-PLATSGAMEPFP-YLAGTAGALLGGL  342 (394)
T ss_pred             HHHH-HHHHHHHHhhcc-ccchHHHHHHHHH
Confidence            4433 333455568777 4678888887766

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1e-19  Score=181.56  Aligned_cols=212  Identities=19%  Similarity=0.169  Sum_probs=179.3

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhh
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      .++|.++...+.+.+.++++++++++.++++++.||++..+.+....+.+.+..++....+|++.+++.|++.|+.++..
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~  151 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG  151 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence            44566666999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc---CCcc
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK---VGWG  163 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---~~~g  163 (365)
                      +|                           ....++..|+.+++|+..++++..+..+|.++|+++++.+.+..   ...|
T Consensus       152 wP---------------------------~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g  204 (495)
T KOG2533|consen  152 WP---------------------------GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG  204 (495)
T ss_pred             ch---------------------------HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence            99                           89999999999999999999999999999999999999865422   2468


Q ss_pred             hHHHH-----------------------------------------------------------HhHHHHHHHHHHHHHH
Q 017823          164 WRISL-----------------------------------------------------------KYRLQFVMAILIPFFQ  184 (365)
Q Consensus       164 wr~~f-----------------------------------------------------------~~~~~~~~~~~~~~~~  184 (365)
                      ||+.|                                                           -.+.+-.+...+..+.
T Consensus       205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~  284 (495)
T KOG2533|consen  205 WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFF  284 (495)
T ss_pred             ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHH
Confidence            99999                                                           1112234444444555


Q ss_pred             hcccccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh----hCcchHHHHhH
Q 017823          185 HVTRINVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADR----LGRKVLFLVGG  246 (365)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~l~~~~  246 (365)
                      .....+.+.+|.|.++++ .|++..++. .+.++..++++++.+++|+++||    ..+|.......
T Consensus       285 ~~lv~~~~~~~lpl~l~~~~~~s~~~a~-~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~  350 (495)
T KOG2533|consen  285 LKLVNYGFSYWLPLYLKSNGGYSELQAN-LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFL  350 (495)
T ss_pred             HhhccccHHHHHHHHHHcCCCcChHHhc-cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            455678889999999988 568888888 89999999999999999999999    44554444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.83  E-value=5.2e-19  Score=172.36  Aligned_cols=262  Identities=15%  Similarity=0.076  Sum_probs=197.8

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASI----LVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l----~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g   84 (365)
                      +++|+|.+++|++.+++.+...+++++.|+++||+|||+..    ..+..+..+  .....+++++.+++.|+++|.+.+
T Consensus        32 ~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~  109 (382)
T TIGR00902        32 KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFS  109 (382)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHc
Confidence            35678899999999999999999999999999999985433    222222222  244467899999999999998888


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      ...+                           ...++..|+  +++|++..+......++|.++++++++.+.   +.+||
T Consensus       110 ~~~p---------------------------~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~---~~~g~  157 (382)
T TIGR00902       110 AGMP---------------------------IGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI---GMFDE  157 (382)
T ss_pred             cchh---------------------------HHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH---HHcCh
Confidence            8777                           666665554  578899999999999999999999988887   44578


Q ss_pred             HHHH-----------------H----------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCC
Q 017823          165 RISL-----------------K----------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKL  205 (365)
Q Consensus       165 r~~f-----------------~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  205 (365)
                      |..|                 +                      .|++.++......+...........+.|.++++.|.
T Consensus       158 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~  237 (382)
T TIGR00902       158 QNILAILTAGLAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGI  237 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            8877                 0                      011112222232232234556666788888888999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHH
Q 017823          206 SESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVY  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (365)
                      ++...+ .......+..+++..+.+++.||+|+|+.+.++.+...+........             ++.+.......+.
T Consensus       238 s~~~~g-~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~q~l~  303 (382)
T TIGR00902       238 SASATG-LLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EAFPLIFLLQILH  303 (382)
T ss_pred             CHhHHH-HHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hhHHHHHHHHHHH
Confidence            999998 77788889999999999999999999999999988888887777654             3345566667777


Q ss_pred             HHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          286 KAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       286 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +..++....+. ..++++. |+++|++++++.++.
T Consensus       304 g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~  336 (382)
T TIGR00902       304 CGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNAL  336 (382)
T ss_pred             HHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHH
Confidence            77776655554 4455677 999999999987643

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.83  E-value=3.2e-19  Score=196.32  Aligned_cols=264  Identities=13%  Similarity=-0.006  Sum_probs=193.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHhhcchhhhhhhhh
Q 017823           15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG---AAFNIYMLIFGRVLLGVGIGFANQVSV   91 (365)
Q Consensus        15 ~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~a~~~~~~~~~r~l~G~~~g~~~~~~~   91 (365)
                      ....+++.+++.++..++++++|+++||+|||++++.+.++..+..++..   .+++++.++++|++.|++.+...+   
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~---  122 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSP---  122 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhch---
Confidence            45579999999999999999999999999999999988876655555443   457899999999999999999999   


Q ss_pred             hhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc------CCcchH
Q 017823           92 WLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK------VGWGWR  165 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~------~~~gwr  165 (365)
                                              ...+++.|++|+++|++++++.+.+..+|.++|+.+++++....      ...+|+
T Consensus       123 ------------------------~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~  178 (1146)
T PRK08633        123 ------------------------AKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRI  178 (1146)
T ss_pred             ------------------------HHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Confidence                                    88899999999999999999999999999999999998876430      001222


Q ss_pred             HHH-------------------------Hh---------------------HHHHHHHHHHHHHHhcccccchhhcHHHH
Q 017823          166 ISL-------------------------KY---------------------RLQFVMAILIPFFQHVTRINVISFYAPVL  199 (365)
Q Consensus       166 ~~f-------------------------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (365)
                      +.+                         ..                     +++.+....+..+...........+.|.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (1146)
T PRK08633        179 APAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAY  258 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            222                         00                     00111222221221122223344456666


Q ss_pred             H-HHcCCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHH
Q 017823          200 F-RTIKLSES-TSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYL  277 (365)
Q Consensus       200 ~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (365)
                      + +..|.+.. ..+ .......++.+++.++.+++.||+++++.+.++.++.+++.+.+...             ...+.
T Consensus       259 ~~~~~g~s~~~~~g-~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  324 (1146)
T PRK08633        259 AKEVLGLDNTFQVQ-YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------------PSLAS  324 (1146)
T ss_pred             HHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------------hhHHH
Confidence            6 56788888 777 88888899999999999999999999988888777777766666543             12334


Q ss_pred             HHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          278 ILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .++..++++++.+....+. ..+..+..|++.||++.|+.+.+
T Consensus       325 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~  366 (1146)
T PRK08633        325 VLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFL  366 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHH
Confidence            4444555555555444443 55668999999999998887765

>PRK10054 putative transporter; Provisional

Probab=99.82  E-value=3.3e-19  Score=174.71  Aligned_cols=265  Identities=10%  Similarity=0.026  Sum_probs=189.7

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      ++++|+|..+.|++.+.+.++..+++++.|+++||+|||+++..+..+..++.++.+++++++.++++|++.|.+.+...
T Consensus        35 ~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  114 (395)
T PRK10054         35 SRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFS  114 (395)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999888777777


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....+..|..|+++|+++.++.....++|..+++.++..+.+    .+||..
T Consensus       115 ~---------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~  163 (395)
T PRK10054        115 T---------------------------VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLP  163 (395)
T ss_pred             H---------------------------HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcH
Confidence            7                           777888999999999999999999999999999999988763    357777


Q ss_pred             H-------------------Hh-------------------HHHHHHHHHHHHHHhcccccchhhcHHHHHH---HcCCC
Q 017823          168 L-------------------KY-------------------RLQFVMAILIPFFQHVTRINVISFYAPVLFR---TIKLS  206 (365)
Q Consensus       168 f-------------------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~  206 (365)
                      |                   +.                   +++.+......++... .......+.+.+..   +.+.+
T Consensus       164 f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~  242 (395)
T PRK10054        164 FWLAAICSAFPLVFIQIWVQRSEKAIATETGSVWSPSVLLQDKALLWFTCSGFLASF-VSGAFASCISQYVMVVADSDFA  242 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhccCceehHHHHHHHHHHH-HHHHhhhhHHHHHHHhcccchH
Confidence            7                   00                   0111122222222111 12222224444442   23444


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHH
Q 017823          207 ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYK  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (365)
                      +...+ .......+.........+.+.||.++|+.+..+.....++...+....            +..+...+...+++
T Consensus       243 ~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~  309 (395)
T PRK10054        243 EKVVA-VVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG------------NSLLLWGMSAAVFT  309 (395)
T ss_pred             HHHHH-HHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc------------hHHHHHHHHHHHHH
Confidence            44445 566666666667778889999999999988888777776665554321            12233334444555


Q ss_pred             HhhccccccccccccccCCChhhhhHHHHHHH
Q 017823          287 AGFAFSWGPLRWLVPSENFPLEIISAGQIITV  318 (365)
Q Consensus       287 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  318 (365)
                      .+.. ...|.......+..|++.|+++.+..+
T Consensus       310 ~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~  340 (395)
T PRK10054        310 VGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS  340 (395)
T ss_pred             HHHH-HHHhhHHHHHHHhCCcccceehHhHHH
Confidence            5543 223444556678899999998877544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.81  E-value=2.5e-18  Score=173.23  Aligned_cols=267  Identities=13%  Similarity=0.043  Sum_probs=179.4

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHH-HHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhhc
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-----GRKAS-ILVRSTAFLAGSALRGAA---FNIYMLIFGRVLLGV   81 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-----Grk~~-l~~~~~~~~~~~~~~~~a---~~~~~~~~~r~l~G~   81 (365)
                      .|.|.++++.+ +.....+ +..+++|+++||+     |||+. +..+....+++....++.   ++++.+.+.|++.|+
T Consensus        42 ~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~  119 (491)
T PRK11010         42 ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF  119 (491)
T ss_pred             CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            36668888886 3333333 6889999999999     99886 556777777777777675   478889999999999


Q ss_pred             chhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC
Q 017823           82 GIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG  161 (365)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  161 (365)
                      +.+...+                           ...++..|++|+++|++++++.+.+..+|.++++.++..+.+.  .
T Consensus       120 ~~a~~~i---------------------------~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~  170 (491)
T PRK11010        120 CSASQDI---------------------------VFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--Y  170 (491)
T ss_pred             HHHHHHH---------------------------HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c
Confidence            9998888                           8889999999999999999999999999999999998888741  3


Q ss_pred             cchHHHH-------------------H----h------H------------HHHHHHHHHHHHHhcccccchhhcHHHHH
Q 017823          162 WGWRISL-------------------K----Y------R------------LQFVMAILIPFFQHVTRINVISFYAPVLF  200 (365)
Q Consensus       162 ~gwr~~f-------------------~----~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (365)
                      +|||..|                   +    .      +            ++.+......... .........+.+.++
T Consensus       171 ~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~-~~~~~~~~~~~~~~l  249 (491)
T PRK11010        171 LGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLY-KLGDAFAMSLTTTFL  249 (491)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            5899998                   0    0      0            0001111111222 122223333445554


Q ss_pred             -HHcCCCcchhhHHHH-HHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHH
Q 017823          201 -RTIKLSESTSLLMSA-IVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLI  278 (365)
Q Consensus       201 -~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (365)
                       ++.|+++++.+ ... ....++.+++.+++|+++||+|+|+.+..+.++..+..+.+.....         ..++.+..
T Consensus       250 ~~~~G~s~~~~g-~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~---------~~~~~~~l  319 (491)
T PRK11010        250 IRGVGFDAGEVG-LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI---------TDKNLYSM  319 (491)
T ss_pred             HHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------ccccHHHH
Confidence             66899999888 665 4556789999999999999999998877666555554433332210         00112222


Q ss_pred             HHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          279 LVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .....+..+..+.+.+.. +....+..|++.+++.+++.+..
T Consensus       320 ~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~  360 (491)
T PRK11010        320 GAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSAL  360 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHH
Confidence            222332222222222222 44556788888888888877765

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.80  E-value=1.8e-18  Score=190.67  Aligned_cols=271  Identities=11%  Similarity=-0.009  Sum_probs=190.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhh
Q 017823           16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILV---RSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVW   92 (365)
Q Consensus        16 ~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~---~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~   92 (365)
                      ...++..+++.+.+.+.++++|+++||+|||+++..   ...+..+..+.....+|+++++++|+++|++.+...+    
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p----  127 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGP----  127 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhch----
Confidence            457888889999999999999999999999997533   2223333333333458999999999999999999999    


Q ss_pred             hhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH----
Q 017823           93 LFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL----  168 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f----  168 (365)
                                             ...+++.|++|+++|++++++.+.+.++|.++|+++++++..   ..+|+..|    
T Consensus       128 -----------------------~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~---~~~~~~~~~~~~  181 (1140)
T PRK06814        128 -----------------------IKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI---SGNFVILVALLM  181 (1140)
T ss_pred             -----------------------HHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHH
Confidence                                   999999999999999999999999999999999999999874   34688775    


Q ss_pred             ---------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHH-HcCCCcc
Q 017823          169 ---------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFR-TIKLSES  208 (365)
Q Consensus       169 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~  208 (365)
                                                             ..+++.++...+..+...........+.|.+++ ..|.++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~  261 (1140)
T PRK06814        182 GIAVLGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDEN  261 (1140)
T ss_pred             HHHHHHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchH
Confidence                                                   001112222232222222233445557788875 4688988


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCC---------CchhhHHHHH
Q 017823          209 TSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG---------FSIGYAYLIL  279 (365)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  279 (365)
                      ..+ ......+++.+++.++.++++||.++++.+..+.++..+..+.+.+...  ......         ......+...
T Consensus       262 ~~g-~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  338 (1140)
T PRK06814        262 VAT-LFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASS--SVPAEPAQLKSILVFLSKRHGWRIL  338 (1140)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccc--ccccccccccchhhhhcccccHHHH
Confidence            888 8889999999999999999999888777666555555544443333100  000000         0002233344


Q ss_pred             HHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          280 VLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +..++++++.+....+. ..+..+..|++.||++.|+.+.+
T Consensus       339 ~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~  378 (1140)
T PRK06814        339 IDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVL  378 (1140)
T ss_pred             HHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHH
Confidence            44455555554444444 56668999999999999988776

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.80  E-value=5.4e-18  Score=171.52  Aligned_cols=261  Identities=18%  Similarity=0.166  Sum_probs=176.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 017823           15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLF   94 (365)
Q Consensus        15 ~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~   94 (365)
                      .....|+.+...++.++..++.|+++|.+|||+.++.+.++..+|+++++.++|...++.+..+.|+|.|....      
T Consensus        77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~------  150 (599)
T PF06609_consen   77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL------  150 (599)
T ss_pred             CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH------
Confidence            35778899999999999999999999999999999999999999999999999999999999999999877765      


Q ss_pred             hhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH------
Q 017823           95 YFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL------  168 (365)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f------  168 (365)
                                            ....++|..|.|.|.....+...........++.++..+.   .+.+|||.|      
T Consensus       151 ----------------------~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~---~~~~WRw~~~~~~i~  205 (599)
T PF06609_consen  151 ----------------------AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA---AHSGWRWIFYIFIIW  205 (599)
T ss_pred             ----------------------HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc---cCCCcchHHHHHHHH
Confidence                                  3444799999999988877776666555556677766554   234699988      


Q ss_pred             --------------------------------------------------------------------------------
Q 017823          169 --------------------------------------------------------------------------------  168 (365)
Q Consensus       169 --------------------------------------------------------------------------------  168 (365)
                                                                                                      
T Consensus       206 ~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv  285 (599)
T PF06609_consen  206 SGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLV  285 (599)
T ss_pred             HHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHH-HHHcCCCcc---hhhHHHHHHHHHHHH
Q 017823          169 ---------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVL-FRTIKLSES---TSLLMSAIVTGSLGT  223 (365)
Q Consensus       169 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~---~~~~~~~~~~~~~~~  223 (365)
                                           +.+ |.+...++..+.....++....+-|.. ...++.++.   ... +.....+++..
T Consensus       286 ~F~~wE~~~~~~~Pl~P~~Lf~~~-r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~-~~s~~~~fg~~  363 (599)
T PF06609_consen  286 AFVVWEWFGAPKDPLFPHRLFKDR-RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIG-WISSPVGFGSC  363 (599)
T ss_pred             HHHHhhhhccCCCCcCCHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceee-hhhhhHHHHHH
Confidence                                 222 333333333322222233333333443 334444442   345 66778888888


Q ss_pred             HHHHHHHHHHhhhCcchH-HHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccc
Q 017823          224 ISTSLSMILADRLGRKVL-FLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPS  302 (365)
Q Consensus       224 ~~~~~~g~l~dr~grr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (365)
                      ++..+.+.+..|++|-|. ++++.+.+.+....+....         .++..  ..+....+.+++.+..-.+. ....+
T Consensus       364 ~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~---------~~n~~--~~i~~~~l~g~giG~~~~~~-~~~~q  431 (599)
T PF06609_consen  364 AGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR---------PDNKN--AAIAFLVLAGFGIGGILVPA-IVIAQ  431 (599)
T ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc---------CCCcc--hHHHHHHHHHHhHHHHHHHH-HHeeE
Confidence            999999999999887554 4566555555444444331         11111  12233333334433222222 34445


Q ss_pred             cCCChhhhhHHHHHHHHH
Q 017823          303 ENFPLEIISAGQIITVAA  320 (365)
Q Consensus       303 e~~p~~~r~~~~~~~~~~  320 (365)
                      -..|++..+++.|+..++
T Consensus       432 l~~p~~~ig~a~gL~~s~  449 (599)
T PF06609_consen  432 LIVPDEDIGTATGLTGSI  449 (599)
T ss_pred             eeeCchHHHHHHHHHHHH
Confidence            678999888888877776

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.79  E-value=8.1e-18  Score=163.91  Aligned_cols=262  Identities=13%  Similarity=0.034  Sum_probs=183.9

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRK----ASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk----~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g   84 (365)
                      ++.+.|..+.|++.+++.++..+++++.|++.||+|||    +.+.....+.  .......++++|.+++.|++.|++.+
T Consensus        32 ~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~  109 (382)
T PRK11128         32 KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFS  109 (382)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHc
Confidence            34677899999999999999999999999999999984    3332222222  22233445889999999999999988


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      ...+                           ...++..++  +++|++..+..+...++|..+||++++.+.   +++||
T Consensus       110 ~~~~---------------------------~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~---~~~g~  157 (382)
T PRK11128        110 PLVP---------------------------LTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV---SWFGE  157 (382)
T ss_pred             cccc---------------------------HHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH---HHcCh
Confidence            8877                           666665655  456888888899999999999999999887   44578


Q ss_pred             HHHH-----------------H----------------------hHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCC
Q 017823          165 RISL-----------------K----------------------YRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKL  205 (365)
Q Consensus       165 r~~f-----------------~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  205 (365)
                      |..|                 +                      .+++..+......+...........+.|.+.++.|.
T Consensus       158 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~  237 (382)
T PRK11128        158 QAILWILTAGVASMLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGY  237 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCC
Confidence            8777                 0                      001112222222222122334455667778888899


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHH
Q 017823          206 SESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVY  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (365)
                      ++.+.+ .......+..++...+.+++.||+++|+.+..+.+...+..+.....             ++.+..++..++.
T Consensus       238 s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~  303 (382)
T PRK11128        238 SASTIG-YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TALPWLIVIQILH  303 (382)
T ss_pred             CHhHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHH
Confidence            988888 77778888899999999999999999999988888777766555433             2344455556666


Q ss_pred             HHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          286 KAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       286 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ++++....... ..+..+. |++++++.++..+..
T Consensus       304 g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~  336 (382)
T PRK11128        304 CGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSAL  336 (382)
T ss_pred             HHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHH
Confidence            66655443333 3444565 566678888877644

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.78  E-value=6.1e-18  Score=167.02  Aligned_cols=272  Identities=15%  Similarity=0.165  Sum_probs=179.7

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhH-HHHHHHHHHHHHHHHHHHhhh------HHHHHHHH
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKA-SILVRSTAFLAGSALRGAAFN------IYMLIFGR   76 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr----~Grk~-~l~~~~~~~~~~~~~~~~a~~------~~~~~~~r   76 (365)
                      .+++|+|+.+.|++.++..+..++..|+.|+++||    +|||| .++.+....+++.++..+.++      ...+++.+
T Consensus        27 ~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  106 (437)
T TIGR00792        27 TDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITY  106 (437)
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            35678889999999999999999999999999998    67755 566787888888877776653      45677788


Q ss_pred             HHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccC-CCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 017823           77 VLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMA-PPKNRGAFNIGFQVCVATAVLSANLLNYGT  155 (365)
Q Consensus        77 ~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  155 (365)
                      ++.+++.+...+                           ...++..|.. ++++|++..++.+.+..+|.++++.+...+
T Consensus       107 ~~~~~~~~~~~~---------------------------~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l  159 (437)
T TIGR00792       107 ILLGLFYSFVNI---------------------------PYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL  159 (437)
T ss_pred             HHHHHHHHhhcc---------------------------cHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887776                           6677778877 468899999999988888887776654443


Q ss_pred             ccc----cCCcchHHHH--------------------H---------------------hHHHHHHHHHHHHHHhccccc
Q 017823          156 QKI----KVGWGWRISL--------------------K---------------------YRLQFVMAILIPFFQHVTRIN  190 (365)
Q Consensus       156 ~~~----~~~~gwr~~f--------------------~---------------------~~~~~~~~~~~~~~~~~~~~~  190 (365)
                      ...    .+..+||..+                    +                     .+++.+.......+.......
T Consensus       160 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  239 (437)
T TIGR00792       160 VSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFN  239 (437)
T ss_pred             HHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            321    2346898876                    0                     001111222222222222222


Q ss_pred             chhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 017823          191 VISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGF  270 (365)
Q Consensus       191 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  270 (365)
                      ....+.+.+.+...-++.... .......+..+++.++.++++||+|||+.+..+..+..++.+.+...           
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------  307 (437)
T TIGR00792       240 IKNGVQVYYFTYVLGDPELFS-YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-----------  307 (437)
T ss_pred             HHcchhheeEeeecCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----------
Confidence            333333444432211344445 56667788999999999999999999999988877777666555432           


Q ss_pred             chhhHHHHHHHHHHHHHhhccccccccccccccCCC-------hhhhhHHHHHHHHH
Q 017823          271 SIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFP-------LEIISAGQIITVAA  320 (365)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~  320 (365)
                      + +..+...+...+.+++.+.. .+..+.+.+|..|       ++.+|++.|+.+..
T Consensus       308 ~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  362 (437)
T TIGR00792       308 G-SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFV  362 (437)
T ss_pred             c-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence            1 12233334444444444433 3444566677755       45678888877766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.78  E-value=2.3e-17  Score=163.00  Aligned_cols=264  Identities=8%  Similarity=-0.060  Sum_probs=169.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR-KASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Gr-k~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      ++.|+|..+.|++.+++.++..+++++.|+++||+|| |+++..+.++..++..+..+.++++.+.+.|++.|++.+...
T Consensus        31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  110 (418)
T TIGR00889        31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTI  110 (418)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHH
Confidence            4567789999999999999999999999999999965 778888888888888888888999999999999999776665


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhccccccee----ec----ccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLY----LS----EMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK  159 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  159 (365)
                      +                           ...+.    ..    |......|.+..+.      +|..+++.+++.+..  
T Consensus       111 ~---------------------------~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~--  155 (418)
T TIGR00889       111 A---------------------------LTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDI--  155 (418)
T ss_pred             H---------------------------HHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcc--
Confidence            5                           22221    11    22233334444442      344444444443321  


Q ss_pred             CCcchHHHH-------------------H---h------------------HHHHHHHHHHHHHHhcccccchhhcHHHH
Q 017823          160 VGWGWRISL-------------------K---Y------------------RLQFVMAILIPFFQHVTRINVISFYAPVL  199 (365)
Q Consensus       160 ~~~gwr~~f-------------------~---~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (365)
                       ...|+..+                   +   .                  |++.++...+..+...........+.|.+
T Consensus       156 -~~~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (418)
T TIGR00889       156 -ELSNIQLYITAGSSALLGVFALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGF  234 (418)
T ss_pred             -cchhHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHH
Confidence             11233111                   0   0                  00001112222222122223334556777


Q ss_pred             HHHcCCCc--------chhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 017823          200 FRTIKLSE--------STSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       200 ~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (365)
                      +++.|.++        +..+ ....+..+..+++.+..++++||+|||+.+..+.++..+....+....         ..
T Consensus       235 ~~~~g~~~~~~~~~~~~~~g-~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~---------~~  304 (418)
T TIGR00889       235 LHEFGRNPEFADSFVVKNAS-IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD---------PE  304 (418)
T ss_pred             HHHhcccccccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---------cc
Confidence            77766554        4446 777888889999999999999999999999999888777765554421         00


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVA  319 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  319 (365)
                      ....+...+..++.+.+.+.. .+....+++|.+|++.|++++|+.+.
T Consensus       305 ~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~  351 (418)
T TIGR00889       305 YFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTL  351 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            111223334445555554433 23334556899999999999999963

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.78  E-value=5.3e-17  Score=159.23  Aligned_cols=265  Identities=15%  Similarity=0.092  Sum_probs=176.5

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhH-HHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-----GRKA-SILVRSTAFLAGSALRGAA---FNIYMLIFGRVLLG   80 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-----Grk~-~l~~~~~~~~~~~~~~~~a---~~~~~~~~~r~l~G   80 (365)
                      +-|+|.+++|++..+...  .+..+++|+++||+     |||| .+..+..+.+++....++.   ++++.+.+..++.+
T Consensus        28 ~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~  105 (402)
T PRK11902         28 VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVA  105 (402)
T ss_pred             HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            347889999999777765  68999999999999     8876 6777788887777777776   45788888888888


Q ss_pred             cchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccC
Q 017823           81 VGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKV  160 (365)
Q Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  160 (365)
                      +..+...+                           ...+++.|+.|+|+|++++++...+..+|.++++.++..+.+.  
T Consensus       106 ~~~~~~~~---------------------------~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~--  156 (402)
T PRK11902        106 FLSASQDI---------------------------VFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR--  156 (402)
T ss_pred             HHHHHHHH---------------------------HHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc--
Confidence            88888888                           8889999999999999999999999999999999988877632  


Q ss_pred             CcchHHHH----------------------H---h---------------HHHHHH-HHHHHHHHhcccccchhhcHHHH
Q 017823          161 GWGWRISL----------------------K---Y---------------RLQFVM-AILIPFFQHVTRINVISFYAPVL  199 (365)
Q Consensus       161 ~~gwr~~f----------------------~---~---------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  199 (365)
                      .+|||..|                      +   .               +++.+. .+..................|.+
T Consensus       157 ~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l  236 (402)
T PRK11902        157 VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFL  236 (402)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            14799888                      0   0               000011 11111221111111112233445


Q ss_pred             HHHcCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHH
Q 017823          200 FRTIKLSESTSLLMSAIVTG-SLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLI  278 (365)
Q Consensus       200 ~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (365)
                      .++.|+++++.+ ......+ ++.+++.++++++.||+|+|+.+..+.....+..+.+.....         ..+..+..
T Consensus       237 ~~~~G~~~~~~g-~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~~~~~~~~  306 (402)
T PRK11902        237 IRGAGFSAGEVG-IVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------TPKHLWTM  306 (402)
T ss_pred             HHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------cCCcHHHH
Confidence            566899988887 5554444 468899999999999999999887766665555444432210         00112333


Q ss_pred             HHHHH----HHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823          279 LVLIC----VYKAGFAFSWGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       279 ~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                      .....    ..+...+ ...+....+.++.+|.+.++...++
T Consensus       307 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  347 (402)
T PRK11902        307 ALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQYALLSAL  347 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            33222    2222222 2233344566888888877754433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.77  E-value=3.2e-17  Score=165.53  Aligned_cols=262  Identities=15%  Similarity=0.142  Sum_probs=199.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhhcchhhhh
Q 017823           13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA-----FNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus        13 ~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a-----~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      -|+...+++..+..+...+.++++|.++||++|||+++.+..+..+..+..++.     .+++.+++.-++.|++.+...
T Consensus        42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~  121 (524)
T PF05977_consen   42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN  121 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999888776655544432     478899999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      |                           +..+++.|..|+++...++++.+...++..++||.+++.+....   |-...
T Consensus       122 P---------------------------A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~---G~~~~  171 (524)
T PF05977_consen  122 P---------------------------AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF---GAAAA  171 (524)
T ss_pred             H---------------------------HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHH
Confidence            9                           99999999999999999999999999999999999988765321   12222


Q ss_pred             H------------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcC
Q 017823          168 L------------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIK  204 (365)
Q Consensus       168 f------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g  204 (365)
                      |                                          +..+.....+.......+ .........|.+. +..|
T Consensus       172 f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l-~~~a~~aLlPl~a~~~l~  250 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNL-FASAVWALLPLFARDVLG  250 (524)
T ss_pred             HHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHH-hhhHHHHhhhHHHHHHhC
Confidence            2                                          111222222222222212 2233344578877 4578


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHH
Q 017823          205 LSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICV  284 (365)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (365)
                      .++...+ .+....+++.++|+++.+++.+|+++++.+..+.+..+++.+.+++.             ++.+...+..++
T Consensus       251 ~~a~~yG-ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~l~l  316 (524)
T PF05977_consen  251 GGASGYG-LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLALIALFL  316 (524)
T ss_pred             CcHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHHHHH
Confidence            8888888 99999999999999999999999999998888888888777777664             334555555566


Q ss_pred             HHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          285 YKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.+......+. .....+..|++.||++.++....
T Consensus       317 ~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~  351 (524)
T PF05977_consen  317 AGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMV  351 (524)
T ss_pred             HHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHH
Confidence            666555444444 44558999999999999998877

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.76  E-value=2.3e-17  Score=161.60  Aligned_cols=265  Identities=12%  Similarity=0.116  Sum_probs=191.1

Q ss_pred             ccccCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            9 NYSKFDSQL-LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         9 ~~~~~~~~~-~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      +++|+|+++ .|.+.++++.++++..++.|+++||+|.|+++.++.+.+++..++.+++++++.+.+.|++.|++.|...
T Consensus        54 ~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~  133 (511)
T TIGR00806        54 TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI  133 (511)
T ss_pred             HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777999 9999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      .                            ...++.+++|+++|+++.++...+..+|.+++++++..+.    .+|||..
T Consensus       134 A----------------------------~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y  181 (511)
T TIGR00806       134 A----------------------------YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISY  181 (511)
T ss_pred             H----------------------------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhH
Confidence            6                            6778899999999999999999999999999999998843    3578876


Q ss_pred             H------------------------H------h---------------------------------------------HH
Q 017823          168 L------------------------K------Y---------------------------------------------RL  172 (365)
Q Consensus       168 f------------------------~------~---------------------------------------------~~  172 (365)
                      .                        +      .                                             ++
T Consensus       182 ~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n  261 (511)
T TIGR00806       182 STLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN  261 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC
Confidence            6                        0      0                                             00


Q ss_pred             HHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhH--HHH
Q 017823          173 QFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSE-STSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGG--IQM  249 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~--~~~  249 (365)
                      +.++-..++.....+++.-+..|...+.++..-++ +..+ ..-.+..+.+.+..+..|++-.++.+--.+.++.  .+.
T Consensus       262 ~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG-~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~  340 (511)
T TIGR00806       262 PQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNG-AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQ  340 (511)
T ss_pred             cchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCC-HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHH
Confidence            11222233344445566666667776666653322 2334 5566667778888888898855553322222222  222


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          250 LVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       250 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +..++.+..             .++.|...+..+++...+.+..+....-+ ++....+.-|...|+.+.+
T Consensus       341 ~gll~~m~~-------------t~~Iw~~Y~~yvlf~~~y~flitia~~~i-A~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       341 AGLVFWMSQ-------------SHDIWVLYVTYVLFRGIYQFLVPIATFQI-ASSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHHhhhhhc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccceEEEEecHHHH
Confidence            222222222             24577777888888887776555444333 4555555556666665555

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.7e-17  Score=166.88  Aligned_cols=266  Identities=18%  Similarity=0.183  Sum_probs=208.2

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHhhcchhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFG-RVLLGVGIGFAN   87 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-r~l~G~~~g~~~   87 (365)
                      ++++.+..+.+|+.++..-...+.+|+.+.+.||+|.|.+.+.+..+..+|.++.+|++++|++++. -++.|+|.|+.+
T Consensus        74 ~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~  153 (509)
T KOG2504|consen   74 DYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIY  153 (509)
T ss_pred             HHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhh
Confidence            4556668889999999999999999999999999999999999999999999999999999988885 478899999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      .                           .....+..++ +|+|+.++++...+.++|..+-+.+...+.   +..|||..
T Consensus       154 ~---------------------------paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~---~~~G~r~~  202 (509)
T KOG2504|consen  154 L---------------------------PAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL---SKYGWRGA  202 (509)
T ss_pred             c---------------------------chhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH---HHhCcHHH
Confidence            9                           8888888776 689999999999999999988888887776   44678877


Q ss_pred             H-------------------------------------------------------------------------------
Q 017823          168 L-------------------------------------------------------------------------------  168 (365)
Q Consensus       168 f-------------------------------------------------------------------------------  168 (365)
                      +                                                                               
T Consensus       203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (509)
T KOG2504|consen  203 LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSP  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccc
Confidence            6                                                                               


Q ss_pred             -----------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017823          169 -----------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLG  237 (365)
Q Consensus       169 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  237 (365)
                                 ..+.+.++.+.........++.....++|.+.++.+++++++. ...++.++..++++++.|+++|+..
T Consensus       283 ~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa-~l~Siigi~~i~gRi~~G~laD~~~  361 (509)
T KOG2504|consen  283 LQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAA-FLLSIIGVSDIIGRIILGLLADKPG  361 (509)
T ss_pred             hhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH-HHHHHHHHhhhhhhhhhhhhcCccc
Confidence                       0111234444444444455677777888888899999999999 9999999999999999999999988


Q ss_pred             cc--hHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHH
Q 017823          238 RK--VLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQI  315 (365)
Q Consensus       238 rr--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  315 (365)
                      .+  ....++.+..+++...+....            + .........++++..+ .+..+...+..|+.+.+.-+.+.|
T Consensus       362 ~~~~~~~~~~ll~~gl~~~~~p~~~------------~-~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~G  427 (509)
T KOG2504|consen  362 IRALVLFLLTLLIAGLARLFLPFAT------------T-YVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYG  427 (509)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhc------------c-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHH
Confidence            43  445555555556554444431            1 2333333334444433 344455556789999999999999


Q ss_pred             HHHHH
Q 017823          316 ITVAA  320 (365)
Q Consensus       316 ~~~~~  320 (365)
                      +...+
T Consensus       428 l~l~~  432 (509)
T KOG2504|consen  428 LLLLF  432 (509)
T ss_pred             HHHHH
Confidence            88887

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.75  E-value=2.6e-16  Score=158.42  Aligned_cols=130  Identities=15%  Similarity=0.124  Sum_probs=116.0

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHhhcchhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVRSTAFLAGSALRGAAFNIYM-LIFGRVLLGVGIGFA   86 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~a~~~~~-~~~~r~l~G~~~g~~   86 (365)
                      +++|++.++.+++.+.+.....+..+++|+++|| +||||+++.+..++.+++++++++.+... +.++|+++|+|.|..
T Consensus        43 ~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~  122 (489)
T PRK10207         43 KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLF  122 (489)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccc
Confidence            4577789999999999998999999999999999 99999999999999999999999876544 558999999999999


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCC--CcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPK--NRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      .+                           ....++.|.+|++  +|+++.+++..+.++|..+|+.+++++.   +..||
T Consensus       123 ~~---------------------------~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~---~~~gw  172 (489)
T PRK10207        123 KA---------------------------NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA---DKFGY  172 (489)
T ss_pred             cC---------------------------CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH---HhhCh
Confidence            99                           8889999999887  4577899999999999999999999988   44579


Q ss_pred             HHHH
Q 017823          165 RISL  168 (365)
Q Consensus       165 r~~f  168 (365)
                      |+.|
T Consensus       173 ~~~F  176 (489)
T PRK10207        173 SVTY  176 (489)
T ss_pred             HHHH
Confidence            9988

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.74  E-value=6.3e-18  Score=174.93  Aligned_cols=221  Identities=15%  Similarity=0.128  Sum_probs=173.9

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-------------------
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF-------------------   67 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~-------------------   67 (365)
                      ++++++++.++.|++.+.+.++++++.++.++++||+|||+.+.++.+++++++++.++.+                   
T Consensus        59 iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        59 IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            4567788899999999999999999999999999999999999999999999999988764                   


Q ss_pred             --------------------------------hHHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhccc
Q 017823           68 --------------------------------NIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQ  115 (365)
Q Consensus        68 --------------------------------~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (365)
                                                      .+..++++|+++|+|.+..++                           
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~---------------------------  191 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP---------------------------  191 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh---------------------------
Confidence                                            256778999999999999999                           


Q ss_pred             ccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC-----------------c--chHHHH--------
Q 017823          116 SVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG-----------------W--GWRISL--------  168 (365)
Q Consensus       116 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-----------------~--gwr~~f--------  168 (365)
                      ...+++.|++|+++|++..++.+.+..+|.++|+++++.+.+....                 |  +|+..|        
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~  271 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL  271 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998877643211                 1  367666        


Q ss_pred             -------------H----hH-------------------------------------HHHHHHHHHHHHHhcccccchhh
Q 017823          169 -------------K----YR-------------------------------------LQFVMAILIPFFQHVTRINVISF  194 (365)
Q Consensus       169 -------------~----~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  194 (365)
                                   +    ..                                     ++.++...+..+...........
T Consensus       272 l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~  351 (633)
T TIGR00805       272 LTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYIT  351 (633)
T ss_pred             HHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence                         0    00                                     00112222333333445566777


Q ss_pred             cHHHHHH-HcCCCcchhhHHHHHHHHH-HHHHHHHHHHHHHhhhCc--chHHHHhHHHHHHHHHH
Q 017823          195 YAPVLFR-TIKLSESTSLLMSAIVTGS-LGTISTSLSMILADRLGR--KVLFLVGGIQMLVSRVM  255 (365)
Q Consensus       195 ~~~~~~~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~gr--r~~l~~~~~~~~i~~~~  255 (365)
                      |.|.+++ ++|+++.+++ .......+ +.+++.+++|+++||+++  |+.+..+.+...++.+.
T Consensus       352 ~lP~yl~~~~g~s~~~ag-~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       352 FLPKYLENQYGISSAEAN-FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHcCCcHHHHH-HHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            8999985 5899999988 66666555 568999999999999984  46666666666665544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.73  E-value=2.9e-17  Score=154.57  Aligned_cols=265  Identities=12%  Similarity=0.023  Sum_probs=182.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhh
Q 017823           13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVW   92 (365)
Q Consensus        13 ~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~   92 (365)
                      -+....|.+.|++.+...+.++.+|.++||+|||.++.+|....++...+.+.+.|+..+..+|++.|+..|...+    
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v----  140 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSV----  140 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHH----
Confidence            3577899999999999999999999999999999999999999999999999999997777779999999998776    


Q ss_pred             hhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc---CCcchHH---
Q 017823           93 LFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK---VGWGWRI---  166 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---~~~gwr~---  166 (365)
                                              ..++++|..++|+|++.++.....+++|.++||.+|+++....   ..+-.-.   
T Consensus       141 ------------------------~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~  196 (451)
T KOG2615|consen  141 ------------------------IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCL  196 (451)
T ss_pred             ------------------------HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHH
Confidence                                    7788999999999999999999999999999999999987622   1110000   


Q ss_pred             --HH------------------------------------------------------HhHH--HHHHHHHHHHHHhccc
Q 017823          167 --SL------------------------------------------------------KYRL--QFVMAILIPFFQHVTR  188 (365)
Q Consensus       167 --~f------------------------------------------------------~~~~--~~~~~~~~~~~~~~~~  188 (365)
                        ..                                                      +.+.  ..+..+....+.....
T Consensus       197 ~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l  276 (451)
T KOG2615|consen  197 LVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLEL  276 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence              00                                                      0001  1111111111211111


Q ss_pred             ccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhC--cchHHHHhHHHHHHHHHHHHHHHhhhcC
Q 017823          189 INVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLG--RKVLFLVGGIQMLVSRVMIGSIMADQIG  265 (365)
Q Consensus       189 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~l~~~~~~~~i~~~~~~~~~~~~~~  265 (365)
                      +....++.+.+. ..+|+++.+.+ .+....++.+.+......+..||.+  .+-.+.....++.-..+.+...      
T Consensus       277 ~s~~~~t~~~l~~~rfg~ss~~~G-~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~------  349 (451)
T KOG2615|consen  277 FSGLENTVLFLTHGRFGYSSMQQG-KVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA------  349 (451)
T ss_pred             HHHHHhhHHHhhcCccCCChhhhe-eeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc------
Confidence            122222222232 45788888888 6777777777766666666666665  3444444444444444444332      


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          266 DHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                             ...........+..+.-+...+.+ ..+.....|+++||+..|+..+.
T Consensus       350 -------~~~~~l~~~s~l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl  396 (451)
T KOG2615|consen  350 -------RTPVVLYLGSTLKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSL  396 (451)
T ss_pred             -------ccchhhhHHHHHHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHH
Confidence                   122333444444445544444444 45558899999999999999988

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.72  E-value=2.6e-16  Score=155.19  Aligned_cols=261  Identities=12%  Similarity=0.048  Sum_probs=155.1

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---Hhh-----hHHHHHHHHHHh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG---AAF-----NIYMLIFGRVLL   79 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~a~-----~~~~~~~~r~l~   79 (365)
                      ++++|+|+.+.|++.+++.++..+++++.|+++||+|||++++.+..+..++.....   .++     .+....++++..
T Consensus        38 ~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (420)
T PRK09528         38 HDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYL  117 (420)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345788899999999999999999999999999999999999876666554433211   111     111122233333


Q ss_pred             hcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc
Q 017823           80 GVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK  159 (365)
Q Consensus        80 G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  159 (365)
                      |.+.....+                           ....+..+ . ++++++..+..+...++|..+++++++.+.+  
T Consensus       118 ~~~~~~~~~---------------------------~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--  166 (420)
T PRK09528        118 GFGFLAGAG---------------------------AIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN--  166 (420)
T ss_pred             hhhhccchh---------------------------hhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh--
Confidence            322222222                           22222221 2 3456778888888889999999999887763  


Q ss_pred             CCcchHHHH----------------------HhH-----------------------HHHHHHHHHHHHHhcccccchhh
Q 017823          160 VGWGWRISL----------------------KYR-----------------------LQFVMAILIPFFQHVTRINVISF  194 (365)
Q Consensus       160 ~~~gwr~~f----------------------~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~  194 (365)
                        .+|+..|                      +.+                       ++.++...+..............
T Consensus       167 --~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~  244 (420)
T PRK09528        167 --INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQ  244 (420)
T ss_pred             --cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHH
Confidence              2477666                      000                       00001111111111111122222


Q ss_pred             cHHHHHHH----cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 017823          195 YAPVLFRT----IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGF  270 (365)
Q Consensus       195 ~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  270 (365)
                      +.|.++.+    .+.+..+.+ .......+...++.++.+++.||+|||+.+..+..+..+...+..+.           
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----------  312 (420)
T PRK09528        245 QFPNFFASFFATPEQGTRVFG-YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----------  312 (420)
T ss_pred             HHHHHHHHHHhccCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----------
Confidence            34554432    244555556 67777788889999999999999999999888887777766665543           


Q ss_pred             chhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823          271 SIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                        ++.+.......+.+........ ....+..|.+|++.|++..+.
T Consensus       313 --~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~  355 (420)
T PRK09528        313 --TGPLEVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLV  355 (420)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeee
Confidence              1223333333333333322222 223455788899998876544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.70  E-value=2.5e-15  Score=150.94  Aligned_cols=128  Identities=10%  Similarity=0.159  Sum_probs=117.7

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      +|+|..+.+++.+.+.++..++++++|+++|| +|||+++..+..+.+++.++.+++++++.+.++|++.|++.|...+ 
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~-  121 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKA-  121 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccC-
Confidence            78889999999999999999999999999999 8999999999999999999999999999999999999999999988 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCC---cchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKN---RGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                                                ...++++|++|+++   |+++.++.+.+.++|..+|+.++..+.   ++.|||.
T Consensus       122 --------------------------~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~---~~~g~~~  172 (475)
T TIGR00924       122 --------------------------NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA---ENYGYHV  172 (475)
T ss_pred             --------------------------CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH---HhcChHH
Confidence                                      88888999998754   888999999999999999999998887   3456888


Q ss_pred             HH
Q 017823          167 SL  168 (365)
Q Consensus       167 ~f  168 (365)
                      .|
T Consensus       173 ~f  174 (475)
T TIGR00924       173 GF  174 (475)
T ss_pred             HH
Confidence            77

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.70  E-value=1.7e-15  Score=144.10  Aligned_cols=258  Identities=12%  Similarity=0.086  Sum_probs=200.3

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHhhcchh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG---AAFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~a~~~~~~~~~r~l~G~~~g   84 (365)
                      .+.++++..|.+.+...++.++.+++++.|++.+|+|+|+.++++..+.++++.+..   -..++..++.+-++.|.|.+
T Consensus        40 ~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~  119 (422)
T COG0738          40 KEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIG  119 (422)
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhH
Confidence            455677799999999999999999999999999999999999999999999999984   45789999999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccC----
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKV----  160 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~----  160 (365)
                      ...+                           ....++....|+++..+-+...|...++|..++|+++..+.....    
T Consensus       120 ~Let---------------------------aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738         120 LLET---------------------------AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHh---------------------------ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            9999                           999999999999989999999999999999999999887764200    


Q ss_pred             ------------CcchHHHH---------------------------------------HhHHHHHHHHHHHHHHhcccc
Q 017823          161 ------------GWGWRISL---------------------------------------KYRLQFVMAILIPFFQHVTRI  189 (365)
Q Consensus       161 ------------~~gwr~~f---------------------------------------~~~~~~~~~~~~~~~~~~~~~  189 (365)
                                  ...||.++                                       ..+++-+....+..+.+....
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~E  252 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAE  252 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHH
Confidence                        01244444                                       122233333333444445556


Q ss_pred             cchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          190 NVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       190 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      .....|.+.++.+ .|.++.++. ...+....+.++|+.++..+.+|+...|.+....+...+.++......        
T Consensus       253 va~gsfl~~y~~~~~g~~~~~aa-~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~--------  323 (422)
T COG0738         253 VAIGSFLVSYLEELLGLNEQQAA-YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG--------  323 (422)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence            6777788888866 788999988 999999999999999999999999999988887766665555555541        


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCChh
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLE  308 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  308 (365)
                            ....+......+.+.+..++.. +....+..|.+
T Consensus       324 ------g~v~~~~l~~ig~F~simfPTI-fslal~~l~~~  356 (422)
T COG0738         324 ------GVVALYALFLIGLFNSIMFPTI-FSLALKNLGEH  356 (422)
T ss_pred             ------ChHHHHHHHHHHHHhHHHHHHH-HHHHHhccCcc
Confidence                  1233444444455555555444 66667778743

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.69  E-value=8.8e-16  Score=150.16  Aligned_cols=260  Identities=11%  Similarity=0.045  Sum_probs=164.9

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---Hh-----hhHHHHHHHHHHhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG---AA-----FNIYMLIFGRVLLG   80 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~a-----~~~~~~~~~r~l~G   80 (365)
                      +++|.|+.+.+++.+++.++..+++++.|+++||+|||+.++.+....+++.....   +.     +.+..+.+.|++.|
T Consensus        31 ~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  110 (396)
T TIGR00882        31 DVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLG  110 (396)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999887666655443221   11     22345566788888


Q ss_pred             cchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccC
Q 017823           81 VGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKV  160 (365)
Q Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  160 (365)
                      ++.+...+                           ....+..|..  +++++..+......++|..+++.+++.+.+   
T Consensus       111 ~~~~~~~~---------------------------~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~---  158 (396)
T TIGR00882       111 FVFSAGAG---------------------------AIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS---  158 (396)
T ss_pred             HHhccchh---------------------------hHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc---
Confidence            88887777                           5555555543  334456667777778888888888877653   


Q ss_pred             CcchHHHH---------------------Hh------------------------HHHHHHHHHHHHHHhcccccchhhc
Q 017823          161 GWGWRISL---------------------KY------------------------RLQFVMAILIPFFQHVTRINVISFY  195 (365)
Q Consensus       161 ~~gwr~~f---------------------~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  195 (365)
                       .+||..|                     +.                        +++.++......+.....+.....+
T Consensus       159 -~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  237 (396)
T TIGR00882       159 -IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQ  237 (396)
T ss_pred             -cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence             3688777                     00                        0000111111111111122233334


Q ss_pred             HHHHHHHc----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 017823          196 APVLFRTI----KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       196 ~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (365)
                      .|.++++.    +.+.+..+ ....+..+...++....+++.||+|||+.+.++..+..+........            
T Consensus       238 ~~~y~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------  304 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVFG-YVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------  304 (396)
T ss_pred             HHHHHHHhccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------------
Confidence            56665443    34444555 67777788888899999999999999999988877777766554432            


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                       ++.+.......+.+.+...... ....+..|..|++.++++.+.
T Consensus       305 -~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~  347 (396)
T TIGR00882       305 -TTALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLI  347 (396)
T ss_pred             -CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehH
Confidence             1233333344444443322111 222344667788887776655

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.2e-16  Score=149.47  Aligned_cols=220  Identities=18%  Similarity=0.099  Sum_probs=166.1

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      ++.+-+.+++|++..+..+...+.+++.|.+.||+|+|-.+++|.+.+..++++.++.+++++++++|.++|+|.++..+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            34455588999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCC-cchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKN-RGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                                                 +..+++++.+|+++ |++++|+...+.++|.++||++|+.+.+.   .|.+.+
T Consensus       179 ---------------------------sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~---~Gk~aP  228 (464)
T KOG3764|consen  179 ---------------------------SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF---AGKSAP  228 (464)
T ss_pred             ---------------------------hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh---cCCcCc
Confidence                                       99999999999875 79999999999999999999999999844   457777


Q ss_pred             H------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCcchh
Q 017823          168 L------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSESTS  210 (365)
Q Consensus       168 f------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~  210 (365)
                      |                                    ..+++.+..................--.+.++ ++...+.-+.
T Consensus       229 FlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~  308 (464)
T KOG3764|consen  229 FLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEV  308 (464)
T ss_pred             HHHHHHHHHHHHHHHHheeCccccCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcce
Confidence            7                                    01112222222111111112222222233333 5555333366


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhC--cchHHHHhHHHHHHHHHHHHHH
Q 017823          211 LLMSAIVTGSLGTISTSLSMILADRLG--RKVLFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~l~~~~~~~~i~~~~~~~~  259 (365)
                      + +......+...+++.+.+.++||++  |......+.+..++++....+.
T Consensus       309 G-~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~  358 (464)
T KOG3764|consen  309 G-LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA  358 (464)
T ss_pred             e-eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh
Confidence            6 7788888999999999999999999  4333334444444444444443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.65  E-value=2.3e-14  Score=134.70  Aligned_cols=221  Identities=19%  Similarity=0.193  Sum_probs=188.2

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhh
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      +.+++++|.+..|.++++..+...+.+++..++++|+|.++.+..++++.+++.++.... +.+.++.+-.+.|.|.+..
T Consensus        38 Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~  116 (395)
T COG2807          38 IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVI  116 (395)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHH
Confidence            456778889999999999999999999999999999999999999999999999999888 7888999999999999999


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                      +.                           ..+..+.|.+| |+-+..++.+.....+|..+++.+...+.+..  .|||.
T Consensus       117 nV---------------------------LLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~  166 (395)
T COG2807         117 NV---------------------------LLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRG  166 (395)
T ss_pred             HH---------------------------hhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHH
Confidence            99                           99999999995 77899999999999999999999988887554  36888


Q ss_pred             HH-----------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhh
Q 017823          167 SL-----------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSL  211 (365)
Q Consensus       167 ~f-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  211 (365)
                      ..                                   .+|.+.-+.+.+.+..+...++....|.|.++.+.|+|+.+++
T Consensus       167 aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG  246 (395)
T COG2807         167 ALGFWALLALLALLIWLPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAG  246 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhh
Confidence            77                                   1222334445555555556778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhC-cchHHHHhHHHHHHHHHHHHHH
Q 017823          212 LMSAIVTGSLGTISTSLSMILADRLG-RKVLFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~l~~~~~~~~i~~~~~~~~  259 (365)
                       ...+...+.+.+.++....+.+|.. +|+........+.++.+.+.+.
T Consensus       247 -~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~  294 (395)
T COG2807         247 -SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA  294 (395)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence             9999999999999999999999765 4555556666677777777654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.63  E-value=5.4e-14  Score=142.10  Aligned_cols=130  Identities=14%  Similarity=0.124  Sum_probs=110.4

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhcchhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVRSTAFLAGSALRGAAF-NIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~a~-~~~~~~~~r~l~G~~~g~~   86 (365)
                      +++|+|.++.+++.+.+........+++|+++|| +|||+.+..+.++..++..++++++ +.+.+.++|++.|++.|..
T Consensus        50 ~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~  129 (500)
T PRK09584         50 KQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLF  129 (500)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcc
Confidence            4577778888888888776666767899999999 5999999999999999999988874 5677788999999999988


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCC--cchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKN--RGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      .+                           ....++.|++|+++  |+.+.++++.+.++|..++|.+++++.   +..||
T Consensus       130 ~~---------------------------~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~---~~~g~  179 (500)
T PRK09584        130 KA---------------------------NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA---AKYGW  179 (500)
T ss_pred             cC---------------------------CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH---HhhCH
Confidence            88                           77888999998654  456788889999999999999999887   44579


Q ss_pred             HHHH
Q 017823          165 RISL  168 (365)
Q Consensus       165 r~~f  168 (365)
                      |+.|
T Consensus       180 ~~~F  183 (500)
T PRK09584        180 SVAF  183 (500)
T ss_pred             HHHH
Confidence            9888

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.61  E-value=2.7e-14  Score=143.34  Aligned_cols=260  Identities=14%  Similarity=0.081  Sum_probs=156.7

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhH-HHHHHHHHHHHHHHHHHHhhh------HHHHHHHHH
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTR----AFGRKA-SILVRSTAFLAGSALRGAAFN------IYMLIFGRV   77 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~d----r~Grk~-~l~~~~~~~~~~~~~~~~a~~------~~~~~~~r~   77 (365)
                      +..|+++...|.+..+.-+.-++..|+.|+++|    |+|||| .++.+....+++.++....++      +..+.+...
T Consensus        35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~  114 (473)
T PRK10429         35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI  114 (473)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            456888999999999999999999999999999    669844 555677776766555543221      334555566


Q ss_pred             HhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccC-CCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           78 LLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMA-PPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        78 l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      +.+++......                           ...++..|.. ++++|.+.+++-..+.++|..+.+.+...+.
T Consensus       115 l~~~~~t~~~i---------------------------p~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~  167 (473)
T PRK10429        115 LWGMTYTIMDI---------------------------PFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFV  167 (473)
T ss_pred             HHHHHHHHHcc---------------------------hHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777777                           7777889988 5889999888866666666544443332211


Q ss_pred             ----cccCCcchHHHH-----------------------------------------H---hHHHHHHHHHHHHHHhccc
Q 017823          157 ----KIKVGWGWRISL-----------------------------------------K---YRLQFVMAILIPFFQHVTR  188 (365)
Q Consensus       157 ----~~~~~~gwr~~f-----------------------------------------~---~~~~~~~~~~~~~~~~~~~  188 (365)
                          ...+..+|+...                                         +   .++++...+...++. ...
T Consensus       168 ~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~-~~~  246 (473)
T PRK10429        168 NYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAY-NIA  246 (473)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHH-HHH
Confidence                011112344332                                         0   112222222222222 223


Q ss_pred             ccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          189 INVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       189 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      ......+.+++.+....+++... .......+..+++.++.++++||+|+|+.+..+..+..++.+.+......      
T Consensus       247 ~~~~~~~~~y~~~y~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~------  319 (473)
T PRK10429        247 SNIINGFAIYYFTYVIGDADLFP-YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA------  319 (473)
T ss_pred             HHHHhhheeeEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence            33333344444444333444444 55566668889999999999999999999988777666555544332100      


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCC
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFP  306 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  306 (365)
                        .+...+..++...+.+.+.+..+ +..+.+.+|..|
T Consensus       320 --~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id  354 (473)
T PRK10429        320 --APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVD  354 (473)
T ss_pred             --CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhh
Confidence              11223344444444555554433 444566678755

>PRK09669 putative symporter YagG; Provisional

Probab=99.60  E-value=2.6e-14  Score=142.13  Aligned_cols=259  Identities=12%  Similarity=0.055  Sum_probs=156.5

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHH-HHHHHHHHHHHHHHHHHhhh------HHHHHHHH
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKAS-ILVRSTAFLAGSALRGAAFN------IYMLIFGR   76 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr----~Grk~~-l~~~~~~~~~~~~~~~~a~~------~~~~~~~r   76 (365)
                      ++.+|+|+.+.|.+.++..+..++..|+.|+++||    +||||. ++.+....+++.++....++      ++.+.+..
T Consensus        37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~  116 (444)
T PRK09669         37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY  116 (444)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            35678889999999999999999999999999999    777555 55666667666655544432      45556666


Q ss_pred             HHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccC-CCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 017823           77 VLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMA-PPKNRGAFNIGFQVCVATAVLSANLLNYGT  155 (365)
Q Consensus        77 ~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  155 (365)
                      .+.+.+......                           ...++..|+. ++++|.+..++...+..+|..+++.+...+
T Consensus       117 ~l~~~~~t~~~i---------------------------p~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl  169 (444)
T PRK09669        117 ILLSLVYTAINV---------------------------PYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL  169 (444)
T ss_pred             HHHHHHHHhhcc---------------------------hHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666766666655                           5667788887 457899988888888888877776554332


Q ss_pred             cc----ccCCcchHHHH--------------------------------------HhHHHHHHHHHHHHHHhcccccchh
Q 017823          156 QK----IKVGWGWRISL--------------------------------------KYRLQFVMAILIPFFQHVTRINVIS  193 (365)
Q Consensus       156 ~~----~~~~~gwr~~f--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  193 (365)
                      ..    .....+|+..+                                      ..+++.+.......+..........
T Consensus       170 ~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~  249 (444)
T PRK09669        170 VDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRG  249 (444)
T ss_pred             HHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHh
Confidence            21    11234677655                                      0011111222221111111111112


Q ss_pred             hcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchh
Q 017823          194 FYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIG  273 (365)
Q Consensus       194 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  273 (365)
                      ...+++.+..--+++... .......+..+++.++.++++||+|+|+.+..+.....+..+.+...           +.+
T Consensus       250 ~~~~y~~~~~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-----------~~~  317 (444)
T PRK09669        250 GATLYYVNYVLLRPDLAT-LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-----------PPS  317 (444)
T ss_pred             hhhheeeeeecCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----------Ccc
Confidence            222222222211222333 44555567778888999999999999999887766555433333222           112


Q ss_pred             hHHHHHHHHHHHHHhhccccccccccccccCCC
Q 017823          274 YAYLILVLICVYKAGFAFSWGPLRWLVPSENFP  306 (365)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  306 (365)
                      +.+...+...+.+.+.+. ..+..+.+.+|..+
T Consensus       318 ~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d  349 (444)
T PRK09669        318 NVWLIFALNILFNFIQNL-TTPLQWSMFSDVVD  349 (444)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Confidence            233344444555555543 34566777788876

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.60  E-value=6.4e-14  Score=136.71  Aligned_cols=272  Identities=7%  Similarity=-0.122  Sum_probs=165.2

Q ss_pred             cccCCchHHHHH--HHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHH-HHHHHHHH---Hhhh-HHHHHHHHHHhhc
Q 017823           10 YSKFDSQLLTTF--TSSLYIAGLIASLFA-SSVTRAFGRKASILVRSTAF-LAGSALRG---AAFN-IYMLIFGRVLLGV   81 (365)
Q Consensus        10 ~~~~~~~~~~~~--~s~~~i~~~i~~~~~-g~l~dr~Grk~~l~~~~~~~-~~~~~~~~---~a~~-~~~~~~~r~l~G~   81 (365)
                      +.|.|.+++|.+  .++..+...+.+|+. ++..||+||||..++...+. .......+   ...+ ...++..-++.++
T Consensus        30 ~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (390)
T TIGR02718        30 EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASL  109 (390)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence            447779999997  466788888888888 45799999999975555332 21122222   1222 3333444455555


Q ss_pred             chhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC
Q 017823           82 GIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG  161 (365)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  161 (365)
                      ..+...+                           ....+..|..++++++...+....+..+|.++|+.....+.   +.
T Consensus       110 ~~a~~d~---------------------------~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~---~~  159 (390)
T TIGR02718       110 ASATQDI---------------------------ATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF---GK  159 (390)
T ss_pred             HHHHHHH---------------------------HHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence            5666666                           66667788888888898888888888999999998877776   44


Q ss_pred             cchHHHH-------------------H---h---------------HHHHHHHHHHHHHHhcccccchhhcHHHHHHHcC
Q 017823          162 WGWRISL-------------------K---Y---------------RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIK  204 (365)
Q Consensus       162 ~gwr~~f-------------------~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  204 (365)
                      .|||..|                   +   .               |++.........+...........+.+.++++.|
T Consensus       160 ~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G  239 (390)
T TIGR02718       160 FGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAG  239 (390)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence            5799887                   0   0               0011122222222222333444556777788889


Q ss_pred             CCcchhhHHHHHHHH-HHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHH
Q 017823          205 LSESTSLLMSAIVTG-SLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLIC  283 (365)
Q Consensus       205 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (365)
                      +++++.+ ......+ ...+++..+.+++.||+|+|+.+..+.....+..+........      . .............
T Consensus       240 ~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~  311 (390)
T TIGR02718       240 WPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF------W-LAPGIAVAWSCSA  311 (390)
T ss_pred             CCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc------c-cCCcHHHHHHHHH
Confidence            9999988 6666655 4666788999999999999999887766553333222221100      0 0011122222222


Q ss_pred             HHHHhhccccccccccccccCCCh-hhhhHHHHHHHHH
Q 017823          284 VYKAGFAFSWGPLRWLVPSENFPL-EIISAGQIITVAA  320 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~  320 (365)
                      +..+..+...... .....+..++ +.+++.+++.++.
T Consensus       312 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~  348 (390)
T TIGR02718       312 FGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQST  348 (390)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHH
Confidence            2222333333333 2232344554 8889999988877

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.59  E-value=2.1e-13  Score=133.86  Aligned_cols=273  Identities=14%  Similarity=0.021  Sum_probs=176.7

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG-RKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~G-rk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +.|+|..|+|.+.+...+...++++++|.++||++ +|+.+.+..++.++........++++.++..-++..+......|
T Consensus        31 ~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~p  110 (400)
T PF03825_consen   31 SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMP  110 (400)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHH
Confidence            45788999999999999999999999999999986 57777777777777777777788898888888888877777666


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCC--CCcchhhhHHHHHHHHHHHH-HH----------------
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPP--KNRGAFNIGFQVCVATAVLS-AN----------------  149 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~i-~~----------------  149 (365)
                                                 ...++..+...+  ++-|+.=.+-..++.++... +.                
T Consensus       111 ---------------------------l~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen  111 ---------------------------LSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             ---------------------------HHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence                                       555555444432  22222222222222222111 00                


Q ss_pred             -------HHhh---hhcccc----CC-----cchHHHH-HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcC-CCcc
Q 017823          150 -------LLNY---GTQKIK----VG-----WGWRISL-KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIK-LSES  208 (365)
Q Consensus       150 -------~~~~---~~~~~~----~~-----~gwr~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~  208 (365)
                             +++.   .+.+..    ..     ..++..+ ..|++.....++..+...........|.+.++++.| .+.+
T Consensus       164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~  243 (400)
T PF03825_consen  164 IAAILSLLLAGFALFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGS  243 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence                   0000   001110    00     0111111 111122223333333334456777788899999988 7777


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHH-HHHHHHHHHHH
Q 017823          209 TSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAY-LILVLICVYKA  287 (365)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  287 (365)
                      ..+ ....+..+.+++.-...+++.+|+|.|+++.++.+..++-..++....         .+....+ .......+.+.
T Consensus       244 ~~g-~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~---------~~~~~~~~~~~l~q~lhG~  313 (400)
T PF03825_consen  244 TIG-ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS---------DPWPFIVALQLLGQLLHGL  313 (400)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHhhhhH
Confidence            777 677788889999999999999999999999999998888887777651         0111111 11222345677


Q ss_pred             hhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          288 GFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       288 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .++..+... ..++.|..|++.|+++|++.++.
T Consensus       314 tf~~~~~a~-~~yi~~~~p~~~~at~Q~l~~~~  345 (400)
T PF03825_consen  314 TFGLFHAAS-VRYIDRIAPPELRATAQGLYSAL  345 (400)
T ss_pred             HHHHHHHHH-HHHHHHhCCccchHHHHHHHHHH
Confidence            766555443 45668999999999999998877

>PTZ00207 hypothetical protein; Provisional

Probab=99.59  E-value=1e-13  Score=141.18  Aligned_cols=119  Identities=17%  Similarity=0.053  Sum_probs=101.7

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhhc
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA------FNIYMLIFGRVLLGV   81 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a------~~~~~~~~~r~l~G~   81 (365)
                      .+++|+|.++.+++.+.. ......+++.|++.||+|||+++.++.+++.++.++++++      ++++.+.+.|++.|+
T Consensus        54 ~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~  132 (591)
T PTZ00207         54 QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL  132 (591)
T ss_pred             HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence            456777799999998774 4455678889999999999999999999999999999998      689999999999999


Q ss_pred             chhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHH-Hhhhh
Q 017823           82 GIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANL-LNYGT  155 (365)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~-~~~~~  155 (365)
                      |.+...+                           .....+.+++| ++||++.++...+.++|..+.+. ...++
T Consensus       133 G~~~~~~---------------------------~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        133 GCMLFDL---------------------------GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHH---------------------------HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888                           77788899986 78999999999999999976444 44443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.58  E-value=3.4e-13  Score=134.49  Aligned_cols=282  Identities=11%  Similarity=0.043  Sum_probs=181.8

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHH-HHHHHHHHHHHHHhhhHH--------------
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTR----AFGRKASILVR-STAFLAGSALRGAAFNIY--------------   70 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~d----r~Grk~~l~~~-~~~~~~~~~~~~~a~~~~--------------   70 (365)
                      ++|.++.+.+++..+..+...+.+|+.|+++|    |+||||.+++. .....++..+.+++++.+              
T Consensus        33 ~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~  112 (477)
T TIGR01301        33 ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPR  112 (477)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhH
Confidence            46778999999999999999999999999999    59999998774 666666667777766643              


Q ss_pred             ---HHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCc--chhhhHHHHHHHHHH
Q 017823           71 ---MLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNR--GAFNIGFQVCVATAV  145 (365)
Q Consensus        71 ---~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~  145 (365)
                         .++++-.+..++.....+                           ...+++.|..|+++|  +.++++.+...++|.
T Consensus       113 ~i~~~~i~~~lld~~~n~~~~---------------------------p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~  165 (477)
T TIGR01301       113 AIIVFVVGFWILDVANNMLQG---------------------------PCRAFLADLTGGDARRTRIANAYFSFFMAIGN  165 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------------------HHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence               223333344446666666                           778899999998865  579999999999999


Q ss_pred             HHHHHHhhhhc--ccc--------C--CcchHHHH---------------------------------------------
Q 017823          146 LSANLLNYGTQ--KIK--------V--GWGWRISL---------------------------------------------  168 (365)
Q Consensus       146 ~i~~~~~~~~~--~~~--------~--~~gwr~~f---------------------------------------------  168 (365)
                      ++|+.+++...  +..        .  ..+.|..|                                             
T Consensus       166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~  245 (477)
T TIGR01301       166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAF  245 (477)
T ss_pred             HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhh
Confidence            99999887541  100        0  01233333                                             


Q ss_pred             ---------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHH-H-cCCCcc------hh---hHHHHHHHHHHHHHHHHH
Q 017823          169 ---------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFR-T-IKLSES------TS---LLMSAIVTGSLGTISTSL  228 (365)
Q Consensus       169 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~------~~---~~~~~~~~~~~~~~~~~~  228 (365)
                               ...+.+...+.+.++. ..+......|.+.+.. + ++-++.      +.   +.+......+...+.+++
T Consensus       246 ~~~i~~~~~~mP~~m~~l~~vqffs-W~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~  324 (477)
T TIGR01301       246 FGELFGAFKYLPRPVWILLLVTCLN-WIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIG  324 (477)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1112233334444444 4455556666666653 2 332221      11   213444555555667777


Q ss_pred             HHHHHhhhCc-chHHHHhHHHHHHHHHHHHHHHhhhcC--C---C-C--CCchhhHHHHHHHHHHHHHhhcccccccccc
Q 017823          229 SMILADRLGR-KVLFLVGGIQMLVSRVMIGSIMADQIG--D---H-G--GFSIGYAYLILVLICVYKAGFAFSWGPLRWL  299 (365)
Q Consensus       229 ~g~l~dr~gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~--~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (365)
                      ..++.+|+|+ |+....+.++.++++....+.......  .   + .  ..+....+..++.....+..++.. ..+|++
T Consensus       325 l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfa  403 (477)
T TIGR01301       325 MEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFA  403 (477)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHH
Confidence            7888999985 677788888888888777765321100  0   0 0  011111355566666666666543 457788


Q ss_pred             ccccCCChh--hhhHHHHHHHHH
Q 017823          300 VPSENFPLE--IISAGQIITVAA  320 (365)
Q Consensus       300 ~~~e~~p~~--~r~~~~~~~~~~  320 (365)
                      ++++..|++  ..|..+|+.|.+
T Consensus       404 l~s~~~~~~~~~~G~~mgilN~~  426 (477)
T TIGR01301       404 LASIRSSNLGAGQGLSMGVLNLA  426 (477)
T ss_pred             HHHHHccccCCCCcchhhHHHHH
Confidence            889999954  558899999888

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.56  E-value=1.6e-13  Score=135.79  Aligned_cols=258  Identities=14%  Similarity=0.186  Sum_probs=186.5

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHH-HHHHHHHHHHHHHHHHh-h-------hHHHHHHH
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTR----AFGRKASI-LVRSTAFLAGSALRGAA-F-------NIYMLIFG   75 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~d----r~Grk~~l-~~~~~~~~~~~~~~~~a-~-------~~~~~~~~   75 (365)
                      +..|+++...|.+..+.-+..++..|+.|.++|    |+||||.. +.+....+++.++.... +       ....+.+.
T Consensus        30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~  109 (428)
T PF13347_consen   30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF  109 (428)
T ss_pred             HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence            456888999999999999999999999999999    89987776 45777777777776655 3       22345666


Q ss_pred             HHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCC-CCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 017823           76 RVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-PKNRGAFNIGFQVCVATAVLSANLLNYG  154 (365)
Q Consensus        76 r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~  154 (365)
                      .++..++......                           ...++..|..+ +++|.+..+.-+.+..+|.++...+...
T Consensus       110 ~~l~~~~~t~~~i---------------------------~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~  162 (428)
T PF13347_consen  110 YILFDIAYTFVQI---------------------------PYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI  162 (428)
T ss_pred             HHHHHHhhhhccC---------------------------chhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            7777888887777                           78888999997 4689999999999999998766666655


Q ss_pred             hccccC---C-cchHHHH-----------------------------------------HhHHHHHHHHHHHHHHhcccc
Q 017823          155 TQKIKV---G-WGWRISL-----------------------------------------KYRLQFVMAILIPFFQHVTRI  189 (365)
Q Consensus       155 ~~~~~~---~-~gwr~~f-----------------------------------------~~~~~~~~~~~~~~~~~~~~~  189 (365)
                      +.+..+   . .+|+...                                         ...|++.......++. ..+.
T Consensus       163 l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~-~~~~  241 (428)
T PF13347_consen  163 LVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQ-WLAF  241 (428)
T ss_pred             hhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHH-Hhhh
Confidence            543222   1 2687776                                         1223333333333333 3344


Q ss_pred             cchhhcHHHHHHHc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          190 NVISFYAPVLFRTI-KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       190 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      .......+++.+.. |.+ +... .......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+..        
T Consensus       242 ~~~~~~~~y~~~~vl~~~-~~~~-~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--------  311 (428)
T PF13347_consen  242 ALMNTFLPYYFTYVLGNE-GLIS-IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG--------  311 (428)
T ss_pred             hhhhhHHHHHHHHHhcCc-hhhH-HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH--------
Confidence            55555666666553 444 4455 667778889999999999999999999999999999988888877762        


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCChh
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLE  308 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  308 (365)
                         .++.+...+...+.+.+.+..+ ..++.+.+|..+.+
T Consensus       312 ---~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~  347 (428)
T PF13347_consen  312 ---PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYD  347 (428)
T ss_pred             ---hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhH
Confidence               1345566666666677766544 55677778988743

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.54  E-value=2e-12  Score=129.46  Aligned_cols=271  Identities=17%  Similarity=0.113  Sum_probs=183.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHHhhcchhhhhhhhhh
Q 017823           16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILV-RSTAFLAGSALRGAA--FNIYMLIFGRVLLGVGIGFANQVSVW   92 (365)
Q Consensus        16 ~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~-~~~~~~~~~~~~~~a--~~~~~~~~~r~l~G~~~g~~~~~~~~   92 (365)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ...+..+.+....+.  .+++...+.-++.-++.+....    
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~v----  145 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNV----  145 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH----
Confidence            456788889999999999999999999987776655 445555666666664  3344444555555567777777    


Q ss_pred             hhhhcccccchhhhhHHHhhcccccceeecccCCCCCc--------------------------chhhhHHHHHHHHHHH
Q 017823           93 LFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNR--------------------------GAFNIGFQVCVATAVL  146 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r--------------------------~~~~~~~~~~~~~g~~  146 (365)
                                             ...+++.|..+++++                          ++.++.-.....+|.+
T Consensus       146 -----------------------fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~  202 (477)
T PF11700_consen  146 -----------------------FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGL  202 (477)
T ss_pred             -----------------------HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHH
Confidence                                   778889999999888                          9999998888888888


Q ss_pred             HHHHHhhhhccccC-----CcchHHHH-----------------------------------------------HhHHHH
Q 017823          147 SANLLNYGTQKIKV-----GWGWRISL-----------------------------------------------KYRLQF  174 (365)
Q Consensus       147 i~~~~~~~~~~~~~-----~~gwr~~f-----------------------------------------------~~~~~~  174 (365)
                      +.-.+...+....+     .+.-|..+                                               ..+.+.
T Consensus       203 v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~  282 (477)
T PF11700_consen  203 VALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQ  282 (477)
T ss_pred             HHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChH
Confidence            87776655432211     12233333                                               112233


Q ss_pred             HHHHHHHHHHhcccccchhhcHHHHHH-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcc--hHHHHhHHHHHH
Q 017823          175 VMAILIPFFQHVTRINVISFYAPVLFR-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRK--VLFLVGGIQMLV  251 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~l~~~~~~~~i  251 (365)
                      ....++..+....+.+.+......+.+ ++|++..+.. .......+.+++|+++.+++.||+|.|  +.+..+.+...+
T Consensus       283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~  361 (477)
T PF11700_consen  283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII  361 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            444455555545677777777777774 7899999988 899999999999999999999999999  776666555422


Q ss_pred             HHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          252 SRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..+. +.......    .......+...+...+.+.+.+. ..+..-.+.+|+.|+++.+...|+....
T Consensus       362 i~~~-g~~G~~~~----~~g~~~~~~f~~~a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~efFgly~i~  424 (477)
T PF11700_consen  362 IPLY-GLFGFWPS----FFGLKSPWEFWVLAVLIGLFMGG-IQSASRSLFSRLIPPGREAEFFGLYAIT  424 (477)
T ss_pred             HHHH-HHHHhhhc----ccCcccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            2222 11100000    11113344455555555555543 3445556669999999999999998887

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.54  E-value=1.2e-12  Score=131.11  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=107.0

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhcchhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVRSTAFLAGSALRGAAF-NIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~a~-~~~~~~~~r~l~G~~~g~~   86 (365)
                      +++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++.+..+..++.++.+..+ +...+.++..+.++|.|..
T Consensus        38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~  117 (493)
T PRK15462         38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLF  117 (493)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccc
Confidence            35678899999999999999999999999999999 999999999999999987766543 2233444444555666666


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCC--CcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPK--NRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      .+                           ...+++.|.+|++  +|....++...+.++|..++|.+.+.+.   +..||
T Consensus       118 ~~---------------------------~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~---~~~Gw  167 (493)
T PRK15462        118 KS---------------------------NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ---EEYSW  167 (493)
T ss_pred             cc---------------------------cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH---hhhCh
Confidence            66                           6677889999876  6999999999999999999999999987   44679


Q ss_pred             HHHH
Q 017823          165 RISL  168 (365)
Q Consensus       165 r~~f  168 (365)
                      +..|
T Consensus       168 ~~~F  171 (493)
T PRK15462        168 AMGF  171 (493)
T ss_pred             HHHH
Confidence            9888

>PRK11462 putative transporter; Provisional

Probab=99.51  E-value=1.4e-12  Score=130.52  Aligned_cols=215  Identities=10%  Similarity=-0.016  Sum_probs=137.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHH-HHHHHHHHHHHHHHHhhh------HHHHHHHHH
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKASIL-VRSTAFLAGSALRGAAFN------IYMLIFGRV   77 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr----~Grk~~l~-~~~~~~~~~~~~~~~a~~------~~~~~~~r~   77 (365)
                      +..|+++...|.+..+.-+--++.-|+.|+++||    +||||..+ .+....+++.++.-..++      +..+.+.-.
T Consensus        38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~  117 (460)
T PRK11462         38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT  117 (460)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence            4678889999999999999999999999999996    78876654 566667776665544442      344555666


Q ss_pred             HhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCC-CCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           78 LLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-PKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        78 l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      +..++......                           ...++..|..+ +++|.+..++...+..+|..+++.+...+.
T Consensus       118 ~~~~~~t~~~i---------------------------py~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv  170 (460)
T PRK11462        118 LLTLLYTVVNI---------------------------PYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV  170 (460)
T ss_pred             HHHHHHHHHhc---------------------------cHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777776                           67777888877 678999999999998888877766654433


Q ss_pred             ccc----CCcchHHHH-------------------------------------HhHHHHHHHHHHHHHHhcccccchhhc
Q 017823          157 KIK----VGWGWRISL-------------------------------------KYRLQFVMAILIPFFQHVTRINVISFY  195 (365)
Q Consensus       157 ~~~----~~~gwr~~f-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (365)
                      ...    ...+|+...                                     ..+++.+..+....+............
T Consensus       171 ~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~  250 (460)
T PRK11462        171 NLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGA  250 (460)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH
Confidence            211    113566544                                     001111222221111112222222222


Q ss_pred             HHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHH
Q 017823          196 APVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLV  251 (365)
Q Consensus       196 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i  251 (365)
                      ..++.+...-+++... .......+..+++.+++++++||+++|+....+.....+
T Consensus       251 ~~y~~~y~~g~~~~~~-~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~  305 (460)
T PRK11462        251 MMYYVTWILGTPEVFV-AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV  305 (460)
T ss_pred             hhhhhhhhcCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            2333332222233333 456677788899999999999999999887655444333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.50  E-value=2.9e-13  Score=135.71  Aligned_cols=274  Identities=13%  Similarity=-0.001  Sum_probs=178.1

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHH-HHHHHHHHhhhH-HHHHHHHHHhhc
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG-----RKASILVRSTAFL-AGSALRGAAFNI-YMLIFGRVLLGV   81 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~G-----rk~~l~~~~~~~~-~~~~~~~~a~~~-~~~~~~r~l~G~   81 (365)
                      +++|+|+++++...+...+...+-.+ +|.++||++     ||+.++++.++.. +.....+..++. ....+.+++.++
T Consensus        54 ~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~  132 (468)
T TIGR00788        54 DDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAAL  132 (468)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            45677799999999999999999666 999999998     7777777776663 333333333443 344448889999


Q ss_pred             chhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHH---HHHHHHHHHHHHHHhhhhccc
Q 017823           82 GIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGF---QVCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~---~~~~~~g~~i~~~~~~~~~~~  158 (365)
                      +.+...+                           ....+..|..+ +++....+..   ....++|.++++.+++.+.  
T Consensus       133 ~~a~~dv---------------------------~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~--  182 (468)
T TIGR00788       133 AKALYDV---------------------------LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL--  182 (468)
T ss_pred             HHHHHHH---------------------------hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH--
Confidence            9999988                           88999999988 5554433333   3334578888888887776  


Q ss_pred             cCCcchHHHH-----------------HhH----------------------------------------HHHHHHHHHH
Q 017823          159 KVGWGWRISL-----------------KYR----------------------------------------LQFVMAILIP  181 (365)
Q Consensus       159 ~~~~gwr~~f-----------------~~~----------------------------------------~~~~~~~~~~  181 (365)
                       +..+||..|                 +.+                                        +.....+...
T Consensus       183 -~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fi  261 (468)
T TIGR00788       183 -DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFI  261 (468)
T ss_pred             -HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence             334577666                 000                                        0011111111


Q ss_pred             HHHhcccccch-hhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHH
Q 017823          182 FFQHVTRINVI-SFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIM  260 (365)
Q Consensus       182 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~  260 (365)
                      ++......... ..|. ...+..|++++..+ ......+++.+++..+.+++.+|++.|+.+.++.++..++.+......
T Consensus       262 fl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G-~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~  339 (468)
T TIGR00788       262 FLSYANLPGASGSVFC-ATTQCLPGGPSFSG-MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILV  339 (468)
T ss_pred             HHHHhhcCCCCceeEE-EEcccCCCCcchhh-hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeee
Confidence            11011111111 1111 11145799999999 888888999999999999999999999999988888777665532211


Q ss_pred             hhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          261 ADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .. .......  +..+.......+..++.+..+.|. ..+..+..|++.+++.+++.+++
T Consensus       340 ~~-~~~~~gi--~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~  395 (468)
T TIGR00788       340 KR-WNLAFGI--SDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASI  395 (468)
T ss_pred             ec-cccccCC--CCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHH
Confidence            00 0000000  112233444455556666666666 45668999999999999999888

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.49  E-value=1.5e-12  Score=129.65  Aligned_cols=273  Identities=14%  Similarity=0.137  Sum_probs=156.7

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHH-HHHHHHHHHHHHHHHHhh-------hHHHHHHH
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF----GRKASI-LVRSTAFLAGSALRGAAF-------NIYMLIFG   75 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~----Grk~~l-~~~~~~~~~~~~~~~~a~-------~~~~~~~~   75 (365)
                      ++..|+++.+.|.+.+...+..++..++.|+++||.    ||||.. ..+.....+..++....+       ........
T Consensus        36 ~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (448)
T PRK09848         36 TDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLT  115 (448)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHH
Confidence            355688899999999999999999999999999996    777755 445444444443321111       12234445


Q ss_pred             HHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCC-CCCcchhhhHHHHHHH-----HHHHHHH
Q 017823           76 RVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-PKNRGAFNIGFQVCVA-----TAVLSAN  149 (365)
Q Consensus        76 r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~-----~g~~i~~  149 (365)
                      ..+.+++.+...+                           ...++..|..+ +++|.+..++-+.+.+     ++..++|
T Consensus       116 ~~~~~~~~~~~~~---------------------------~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p  168 (448)
T PRK09848        116 YMGLGLCYSLVNI---------------------------PYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGP  168 (448)
T ss_pred             HHHHHHHHHHhcc---------------------------cHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777776                           55566666554 4678887766554333     4445555


Q ss_pred             HHhhhhccc-c-CCcchHHHH----------------------------------HhHHHHHHHHHHHHHHhcccccchh
Q 017823          150 LLNYGTQKI-K-VGWGWRISL----------------------------------KYRLQFVMAILIPFFQHVTRINVIS  193 (365)
Q Consensus       150 ~~~~~~~~~-~-~~~gwr~~f----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  193 (365)
                      .++...... . ....|+..+                                  ..+++.+.......+..........
T Consensus       169 ~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~  248 (448)
T PRK09848        169 SIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVS  248 (448)
T ss_pred             HHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHh
Confidence            554332100 0 001233322                                  0011222222222222233333444


Q ss_pred             hcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCch
Q 017823          194 FYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI  272 (365)
Q Consensus       194 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  272 (365)
                      ...|.++++ .|.++.... .......+..+++.++.+++.||+|+|+.+..+.++..++.+.+.+.           +.
T Consensus       249 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-----------~~  316 (448)
T PRK09848        249 ASSLFYVRYVLNDTGLFTV-LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-----------SV  316 (448)
T ss_pred             hhheeeEeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----------Cc
Confidence            445555543 455544443 33444456678889999999999999999999888777776655532           11


Q ss_pred             hhHHHHHHHHHHHHHhhccccccccccccccCCChh-------hhhHHHHHHHHH
Q 017823          273 GYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLE-------IISAGQIITVAA  320 (365)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~~~  320 (365)
                      ...+...+...+.+.+.+... +..+...+|..|.+       .+|...|+.+..
T Consensus       317 ~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~  370 (448)
T PRK09848        317 WSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT  370 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence            223333444444555554443 33455667777643       346666666555

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.3e-13  Score=125.27  Aligned_cols=267  Identities=12%  Similarity=0.103  Sum_probs=181.4

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhhcchh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVRSTAFLAGSALRGA---AFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~---a~~~~~~~~~r~l~G~~~g   84 (365)
                      .+.+++.++..++.+.|.....+-+.+.|++.|| +|-|+.-++-+....+|.++.+.   .+.+|+++.+|++.|+|.-
T Consensus        72 ~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgE  151 (459)
T KOG4686|consen   72 LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGE  151 (459)
T ss_pred             cccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCch
Confidence            3455568889999999999999999999999996 68887776666666777777654   5889999999999999988


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc----cC
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI----KV  160 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~----~~  160 (365)
                      ....                           .-..|..-|+..|+.+.++|+.....-+|..+--.+..++.+.    .+
T Consensus       152 SlAV---------------------------aQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~  204 (459)
T KOG4686|consen  152 SLAV---------------------------AQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFP  204 (459)
T ss_pred             hhhh---------------------------hhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcc
Confidence            7777                           7889999999999999999988776666665433332222211    00


Q ss_pred             C-----cchHHHH-------------------------------------------HhHHHHHHHHHHHHHHhcccccch
Q 017823          161 G-----WGWRISL-------------------------------------------KYRLQFVMAILIPFFQHVTRINVI  192 (365)
Q Consensus       161 ~-----~gwr~~f-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  192 (365)
                      .     .|-...+                                           .+..++++...+++... .....+
T Consensus       205 ~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yy-va~fPF  283 (459)
T KOG4686|consen  205 GVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYY-VAWFPF  283 (459)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCCcccccccccCccHHHHHHHHHHHH-HHHHHH
Confidence            0     1111111                                           23344555555544443 344555


Q ss_pred             hhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHH-HHHHHHHHHHHHhhhcCCCCCC
Q 017823          193 SFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQ-MLVSRVMIGSIMADQIGDHGGF  270 (365)
Q Consensus       193 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~  270 (365)
                      ....|.++ +.+|+|+..++ .+.+.....+.+..++.|.++||.|++...+.+..+ ...+-.++.+..          
T Consensus       284 i~lg~~fF~~rfGlS~~~a~-~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~----------  352 (459)
T KOG4686|consen  284 ITLGPMFFQKRFGLSAVSAG-NILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF----------  352 (459)
T ss_pred             hhhhHHHHHHhhCCChhhcc-chhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh----------
Confidence            55667777 66899999998 777777778888889999999999999777665444 334444444432          


Q ss_pred             chhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          271 SIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                        -+++   ..+++.+..+... ....|..++-+.|+++-|++.|+.+.+
T Consensus       353 --lsPy---~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsI  396 (459)
T KOG4686|consen  353 --LSPY---TSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSI  396 (459)
T ss_pred             --ccHH---HHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHH
Confidence              1122   2222333333211 112244456778899999999999888

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.44  E-value=3e-12  Score=122.92  Aligned_cols=264  Identities=11%  Similarity=0.041  Sum_probs=184.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhhcchhhhhhhh
Q 017823           15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASI-LVRSTAFLAGSALRGAAFN---IYMLIFGRVLLGVGIGFANQVS   90 (365)
Q Consensus        15 ~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l-~~~~~~~~~~~~~~~~a~~---~~~~~~~r~l~G~~~g~~~~~~   90 (365)
                      .+..+...++..+..++.+|+.|.++|+.|+||.. -....+..+......++++   ++..+..-.+..++......  
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~V--  134 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNV--  134 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhe--
Confidence            45678888888999999999999999999976654 5555566666666666654   45555667788888888888  


Q ss_pred             hhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc-----------
Q 017823           91 VWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK-----------  159 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----------  159 (365)
                                               ...+++.+..++++-++.++.......+|..+...+........           
T Consensus       135 -------------------------fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~  189 (438)
T COG2270         135 -------------------------FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLG  189 (438)
T ss_pred             -------------------------ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeec
Confidence                                     78888999999999999888877777777766555532211100           


Q ss_pred             ----CCc----------chHHHH-----------------------------------HhHHHHHHHHHHHHHHhccccc
Q 017823          160 ----VGW----------GWRISL-----------------------------------KYRLQFVMAILIPFFQHVTRIN  190 (365)
Q Consensus       160 ----~~~----------gwr~~f-----------------------------------~~~~~~~~~~~~~~~~~~~~~~  190 (365)
                          +..          .|-..+                                   ..+++.+..+++..+...-+.+
T Consensus       190 l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~  269 (438)
T COG2270         190 LPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVN  269 (438)
T ss_pred             cCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHH
Confidence                000          122222                                   1122234444455554456778


Q ss_pred             chhhcHHHHHH-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCC
Q 017823          191 VISFYAPVLFR-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG  269 (365)
Q Consensus       191 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  269 (365)
                      .+......+-. ++|++..+.. +......+.+++|+++.|++.||+|.|+++..+.++..+..+...+..         
T Consensus       270 til~~~~~fg~~~~gls~~~ll-l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~---------  339 (438)
T COG2270         270 TILAMGGVFGAADLGLSSTELL-LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE---------  339 (438)
T ss_pred             HHHHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc---------
Confidence            88878888875 8999999998 999999999999999999999999999988888777666665554431         


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                          ......++..+.+.+.+.. ....-.+..+++|+++-++..|+.+..
T Consensus       340 ----~~~~f~i~gll~g~s~G~~-qA~SRSy~~~lvp~~k~~~fFglyalt  385 (438)
T COG2270         340 ----GELDFWILGLLVGTSLGGA-QASSRSYLARLVPKGKEGRFFGLYALT  385 (438)
T ss_pred             ----ccHHHHHHHHHHHHhcchH-HHHHHHHHHHhCCCccccceeehhhhh
Confidence                1223333334444444433 334456668999999999988888877

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.6e-11  Score=119.45  Aligned_cols=258  Identities=17%  Similarity=0.196  Sum_probs=183.0

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHH-HHHHHHHHHHHHHHHHHhhh------HHHHHHHH
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKAS-ILVRSTAFLAGSALRGAAFN------IYMLIFGR   76 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr----~Grk~~-l~~~~~~~~~~~~~~~~a~~------~~~~~~~r   76 (365)
                      ++..|+++...|.+..+.=+--++.-|+.|.+.||    +||+|. ++.+....++.+.++-.+++      .....+..
T Consensus        40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY  119 (467)
T COG2211          40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY  119 (467)
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence            45678889999999999999999999999999996    787665 56677888888888877763      45566677


Q ss_pred             HHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCC-CCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 017823           77 VLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-PKNRGAFNIGFQVCVATAVLSANLLNYGT  155 (365)
Q Consensus        77 ~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  155 (365)
                      .+.+++....+.                           ..-++..|+.+ +++|.+..++-+.+..+|.++...+...+
T Consensus       120 ~l~~l~YT~vni---------------------------Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl  172 (467)
T COG2211         120 MLLGLGYTLVNI---------------------------PYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPL  172 (467)
T ss_pred             HHHHHHHHheeC---------------------------chhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887                           77777778765 57899999999999999977766555444


Q ss_pred             ccc----cCCcchHHHH-------------------------------------------HhHHHHHHHHHHHHHHhccc
Q 017823          156 QKI----KVGWGWRISL-------------------------------------------KYRLQFVMAILIPFFQHVTR  188 (365)
Q Consensus       156 ~~~----~~~~gwr~~f-------------------------------------------~~~~~~~~~~~~~~~~~~~~  188 (365)
                      .+.    +...||+...                                           ..+|++.. .+...+....+
T Consensus       173 v~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~-~l~~~l~~~~~  251 (467)
T COG2211         173 VKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLL-LLLMNLLLFIA  251 (467)
T ss_pred             HHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHH-HHHHHHHHHHH
Confidence            332    2235777665                                           12222333 33333333444


Q ss_pred             ccchhhcHHHHHH-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          189 INVISFYAPVLFR-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       189 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      .+.......+|.+ ..|.++.... ..........+++.++...+.+|+|+|+++..+.++..++.+++.+.        
T Consensus       252 ~~i~~s~~~yy~~y~lg~~~l~~~-~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~--------  322 (467)
T COG2211         252 FNIRGSIMVYYVTYVLGDPELFAY-LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT--------  322 (467)
T ss_pred             HHHHhhhhheeEEEEcCChHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh--------
Confidence            4444434444442 2455555555 56666677777779999999999999999999999999988888876        


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCC
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFP  306 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  306 (365)
                         +.++....++..++.+.+.+. ..+++|.+.+|..+
T Consensus       323 ---~~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vD  357 (467)
T COG2211         323 ---PAGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTVD  357 (467)
T ss_pred             ---cCcchHHHHHHHHHHHHHhhc-cccccHHHhcchhh
Confidence               224455556666666666654 46678998888765

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.29  E-value=5.2e-12  Score=103.46  Aligned_cols=117  Identities=27%  Similarity=0.359  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhccccc
Q 017823           22 TSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD  101 (365)
Q Consensus        22 ~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~  101 (365)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+...+             
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------   70 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALV-------------   70 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-------------
Confidence            3456688899999999999999999999999999999999888889999999999999999999888             


Q ss_pred             chhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823          102 LLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                    ....++.|..|+++|++.++..+....+|..+++.+...+.+   ..+|+..+
T Consensus        71 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~  120 (141)
T TIGR00880        71 --------------AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ---FLGWRAPF  120 (141)
T ss_pred             --------------hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc---ccchHHHH
Confidence                          888889999999999999999999999999999999988873   34576654

>TIGR01272 gluP glucose/galactose transporter

Probab=99.29  E-value=1.2e-10  Score=110.70  Aligned_cols=210  Identities=8%  Similarity=0.028  Sum_probs=150.2

Q ss_pred             HHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHH
Q 017823           64 GAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVAT  143 (365)
Q Consensus        64 ~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~  143 (365)
                      +...+++.++++-++.|.|.+...+                           ....++.+..|+|++.+.+++.+.++++
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~---------------------------~~n~~v~~~~~~~~~~~~l~~~~~~~~~   57 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQV---------------------------AANPYVSILGPIETAASRLALTQAFNKL   57 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHh---------------------------hHHHHHHHHCCcchHHHHHHHHHHHhhh
Confidence            3557899999999999999999999                           9999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccC-------------CcchHHHH----------------------------------------Hh
Q 017823          144 AVLSANLLNYGTQKIKV-------------GWGWRISL----------------------------------------KY  170 (365)
Q Consensus       144 g~~i~~~~~~~~~~~~~-------------~~gwr~~f----------------------------------------~~  170 (365)
                      |..++|.++..+.....             ...|+.++                                        ..
T Consensus        58 G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  137 (310)
T TIGR01272        58 GTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAF  137 (310)
T ss_pred             HHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHH
Confidence            99999999987663210             13688777                                        00


Q ss_pred             HHHHHHHHHHHHHHhcccccchhhcHHHHHHH---cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHH
Q 017823          171 RLQFVMAILIPFFQHVTRINVISFYAPVLFRT---IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGI  247 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~  247 (365)
                      +++......+..+...........|.+.|+++   .|+++++.. ........+.++|+++++++.||+|+|+.+..+..
T Consensus       138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~  216 (310)
T TIGR01272       138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAF  216 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            22223333444444454566777889999964   488998888 88999999999999999999999999998887776


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHH
Q 017823          248 QMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIIT  317 (365)
Q Consensus       248 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  317 (365)
                      +..+..++....           + . . .......+.+++.+..++.. .....+..|++ .+++.++.
T Consensus       217 l~~~~~~l~~~~-----------~-~-~-~~~~~~~l~g~~~s~i~P~~-~s~a~~~~~~~-~~~asai~  270 (310)
T TIGR01272       217 LAVLLSIGAALT-----------H-G-Y-VAMWFVLALGLFNSIMFPTI-FSLALNALGRH-TSQGSGIL  270 (310)
T ss_pred             HHHHHHHHHHHc-----------C-C-H-HHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhh-hhhhHHHH
Confidence            666655333322           1 1 1 11223334455555444443 44556766654 34444543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=1.4e-10  Score=112.14  Aligned_cols=272  Identities=13%  Similarity=0.048  Sum_probs=174.6

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh------hHH--HHHHHHHHhhc
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF------NIY--MLIFGRVLLGV   81 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~------~~~--~~~~~r~l~G~   81 (365)
                      .++ +.+..-|...+|.+.+....+++-|+.|++|-|...+++..+.++|+.+...+.      .++  ....+..+.+.
T Consensus        74 ~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~  152 (480)
T KOG2563|consen   74 FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA  152 (480)
T ss_pred             Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH
Confidence            344 555667888899999999999999999999999999999999999999988773      344  56677777777


Q ss_pred             chhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcccc--
Q 017823           82 GIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIK--  159 (365)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--  159 (365)
                      +.-....                           .-+....-|+|+++|..+..+-.++..+|.+++.++...+....  
T Consensus       153 Aq~Fim~---------------------------lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~  205 (480)
T KOG2563|consen  153 AQPFILG---------------------------LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKD  205 (480)
T ss_pred             hhhHhhc---------------------------cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCC
Confidence            7766665                           44555677999999999999999999999999999888877554  


Q ss_pred             -CCcchHHH--H--------------------------------------------HhHHHHHHHHHHHHHHhcccccch
Q 017823          160 -VGWGWRIS--L--------------------------------------------KYRLQFVMAILIPFFQHVTRINVI  192 (365)
Q Consensus       160 -~~~gwr~~--f--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  192 (365)
                       ++..|...  +                                            ..+.+.+....+........++..
T Consensus       206 ~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l  285 (480)
T KOG2563|consen  206 SEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSL  285 (480)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHH
Confidence             33556553  2                                            111112222222222222233333


Q ss_pred             hhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcch-HHHHhHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 017823          193 SFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKV-LFLVGGIQMLVSRVMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       193 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (365)
                      ...+..-+...|++...++ +...+..+.+++++.++|++.||.++-+ ..++......++.+.+.... .       ..
T Consensus       286 ~~~l~~~l~~sgY~~~~aG-~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-~-------~~  356 (480)
T KOG2563|consen  286 STLLNLALCPSGYEGVFAG-YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-L-------FL  356 (480)
T ss_pred             HHHhhhccccccCCccccc-hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-c-------cC
Confidence            3333222334567777777 8889999999999999999999987644 44444444444432222221 0       01


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                       ...+.......++++ +..+..|+..-+..|..=+..-++..|+.+..
T Consensus       357 -~~~viv~~t~~~~g~-~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~  403 (480)
T KOG2563|consen  357 -GDSVIVFTTCGLLGF-FGTGYLPIGFELGVETTYPVAEGTSSGLLNLS  403 (480)
T ss_pred             -CceEehhhhHHHHHH-hhcCCCCcceeeeeeeccccCCcccceeEEee
Confidence             112222222222333 34456677666767764333334444544444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.19  E-value=1.2e-09  Score=107.20  Aligned_cols=274  Identities=15%  Similarity=0.159  Sum_probs=187.7

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhhcchhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVRSTAFLAGSALRGAA--FNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~a--~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      +++|.++..-+.+.|.--..+..+++|+++||+ |+|++++.+.++..+|.++.+.+  .+...+.++-++.++|.|..-
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            779999999999999999999999999999995 99999999999999999999888  478899999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCC--CcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPK--NRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWR  165 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr  165 (365)
                      +                           ....++.|.+|++  +|....+++.++.++|.+++|.+..++.   ++.||.
T Consensus       136 ~---------------------------NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~---~~~g~~  185 (498)
T COG3104         136 P---------------------------NISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA---INYGWH  185 (498)
T ss_pred             c---------------------------cHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH---HhhCHH
Confidence            9                           8889999999875  3777888999999999999999999988   556788


Q ss_pred             HHH-----------------------------------------------------------------------------
Q 017823          166 ISL-----------------------------------------------------------------------------  168 (365)
Q Consensus       166 ~~f-----------------------------------------------------------------------------  168 (365)
                      ..|                                                                             
T Consensus       186 ~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~  265 (498)
T COG3104         186 VGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAII  265 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888                                                                             


Q ss_pred             ------------HhHHHHHHHHHHHHHH------hcccccchhhcHHHHH-HH-cCCCcchhhHHHHHHHHHHHHHHHHH
Q 017823          169 ------------KYRLQFVMAILIPFFQ------HVTRINVISFYAPVLF-RT-IKLSESTSLLMSAIVTGSLGTISTSL  228 (365)
Q Consensus       169 ------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  228 (365)
                                  ..|++.+..+.+..+.      .--....++.|..... ++ .|++-...  +.-+...+.-++..++
T Consensus       266 ~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~--~fQslNp~~Iii~~pI  343 (498)
T COG3104         266 YFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPA--WFQSLNPFFIILFSPI  343 (498)
T ss_pred             HHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHH--HHHhhCHHHHHHHHHH
Confidence                        1233333222221111      1111223333333332 12 23333322  3556666666777777


Q ss_pred             HHHHHhhhCcc-------hHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccc
Q 017823          229 SMILADRLGRK-------VLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVP  301 (365)
Q Consensus       229 ~g~l~dr~grr-------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (365)
                      ...+-.|.+++       .-+-++..++..+.+.+.........+.   +..+.++.+....+..++ ....+|+...++
T Consensus       344 ~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~---~~~s~~~lil~y~l~s~g-EL~iSpvGLs~~  419 (498)
T COG3104         344 LAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPS---GLVSVWWLVLSYVLQSFG-ELFISPVGLSMV  419 (498)
T ss_pred             HHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCcCHHHHHHHHHHHHHH-HHHhCHHHHHHH
Confidence            77776664433       2345566666666666665532222111   222334444444444443 566788888888


Q ss_pred             ccCCChhhhhHHHHHHHHH
Q 017823          302 SENFPLEIISAGQIITVAA  320 (365)
Q Consensus       302 ~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..+.|++..+..++.-...
T Consensus       420 t~laP~~~~s~~ma~wfLt  438 (498)
T COG3104         420 TKLAPPALKSFIMAMWFLT  438 (498)
T ss_pred             HHhChHHHHHHHHHHHHHH
Confidence            9999998888777765444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.16  E-value=1.1e-09  Score=106.78  Aligned_cols=265  Identities=15%  Similarity=0.124  Sum_probs=146.3

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--HHHHHHHH-HHh----hhHH-HHHHHHHHhhc
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTA--FLAGSALR-GAA----FNIY-MLIFGRVLLGV   81 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~--~~~~~~~~-~~a----~~~~-~~~~~r~l~G~   81 (365)
                      ..|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++.....  ...+.... .+.    .|++ ..+++-...|+
T Consensus        37 ~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~  116 (412)
T PF01306_consen   37 VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGL  116 (412)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTT
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999966654433322  22232222 222    2222 22233333344


Q ss_pred             chhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC
Q 017823           82 GIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG  161 (365)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  161 (365)
                      ......+                           ..-+++.++.  ++.+.=.|-..+..++|..++..+++.+.+..++
T Consensus       117 ~f~~~~~---------------------------~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~  167 (412)
T PF01306_consen  117 VFNAGVP---------------------------LSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPN  167 (412)
T ss_dssp             TTTTHHH---------------------------HHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcccch---------------------------HHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCcc
Confidence            3334444                           3333333332  2222223333344444444444444433321110


Q ss_pred             c-chHHHH------------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHH
Q 017823          162 W-GWRISL------------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPV  198 (365)
Q Consensus       162 ~-gwr~~f------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (365)
                      . -|-...                                          +.++  ++.+.+......+.+.......|.
T Consensus       168 ~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~--fw~~~l~v~g~~~~Y~vfdqqf~~  245 (412)
T PF01306_consen  168 IIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRN--FWFFVLFVIGVAAIYDVFDQQFPI  245 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 011110                                          2222  222222222212233333333444


Q ss_pred             HHHHc----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhh
Q 017823          199 LFRTI----KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGY  274 (365)
Q Consensus       199 ~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  274 (365)
                      |+..+    +.+....+ ...++--+.+++.-.+..++.+|+|.|+.++++..++.+-.+..++.             ++
T Consensus       246 y~~~~f~~~~~g~~~~G-~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------------~~  311 (412)
T PF01306_consen  246 YFASFFQSAGQGNQMYG-YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------------TN  311 (412)
T ss_dssp             HHHHTSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------------S
T ss_pred             HHHHHhcccccChhHHh-HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-------------cc
Confidence            54433    33445556 77778888889999999999999999999999999999998888776             33


Q ss_pred             HHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          275 AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.+...-.+.+.-+....-+. .-+.++.+|+|..++.+.+..++
T Consensus       312 ~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~  356 (412)
T PF01306_consen  312 PWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQF  356 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHH
Confidence            5566666666666655443333 34668999999998888877555

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.11  E-value=2.5e-09  Score=101.48  Aligned_cols=208  Identities=14%  Similarity=0.092  Sum_probs=134.2

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|++..+++.+....+...++..++.|.++||+|||+..+.-.++.+++++. -..++++.++++|++.|++....+.
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHH
Confidence            357888999999999999999999999999999999999999999999998864 4568899999999999999999988


Q ss_pred             h-hhhhhhhcccccchhhhhHHHhhcccccceeecccC----CCCCcchhhhHHH-HHHHHHHHHHHHHhhhhccccCCc
Q 017823           89 V-SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMA----PPKNRGAFNIGFQ-VCVATAVLSANLLNYGTQKIKVGW  162 (365)
Q Consensus        89 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~~~~  162 (365)
                      + +-|+                           +.|+.    |++..+...+... ...++-.+.+.+++..+.+..+ .
T Consensus       141 ~FEsW~---------------------------V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~  192 (354)
T PF05631_consen  141 AFESWM---------------------------VHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-F  192 (354)
T ss_pred             HHHHHH---------------------------HHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-C
Confidence            6 7777                           34432    2222222222111 1122222333333333322111 1


Q ss_pred             chHHHH------------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHH
Q 017823          163 GWRISL------------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLF  200 (365)
Q Consensus       163 gwr~~f------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (365)
                      |-..+|                                          ...++.+....+......+.+.....|.|.+-
T Consensus       193 g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~  272 (354)
T PF05631_consen  193 GPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALD  272 (354)
T ss_pred             CCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceec
Confidence            112222                                          22345555666666666666677777888876


Q ss_pred             HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hhCcchHHHHhHHH
Q 017823          201 RTIKLSESTSLLMSAIVTGSLGTISTSLSMILAD-RLGRKVLFLVGGIQ  248 (365)
Q Consensus       201 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~l~~~~~~  248 (365)
                      .  +-++...+ .+........++|+.+..++.. +......+.....+
T Consensus       273 ~--~~~~~P~G-lIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~  318 (354)
T PF05631_consen  273 P--DDEELPLG-LIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAV  318 (354)
T ss_pred             C--CCCCCCch-HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            1  11122344 7888888899999988866554 43333333333333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.08  E-value=6.7e-10  Score=106.34  Aligned_cols=130  Identities=15%  Similarity=0.055  Sum_probs=109.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHhhcchhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNI--YMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~--~~~~~~r~l~G~~~g~~   86 (365)
                      ++.+.+.++.+.+.+...++..+++++.|++.||+|||+.+..+..+..++.++..+.++.  ..+....++.|++.+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  312 (377)
T TIGR00890       233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT  312 (377)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence            3456778889999999999999999999999999999999999988888888877776643  33456678888888877


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                      .+                           ..+.++.|..|+++|++..++.+....+|..+++.+.+.+.   +..||+.
T Consensus       313 ~~---------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~---~~~g~~~  362 (377)
T TIGR00890       313 IS---------------------------LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL---TEIGFEY  362 (377)
T ss_pred             hh---------------------------ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH---hhhchhh
Confidence            77                           67778899999999999999999999999999999998887   3346766


Q ss_pred             HH
Q 017823          167 SL  168 (365)
Q Consensus       167 ~f  168 (365)
                      .+
T Consensus       363 ~f  364 (377)
T TIGR00890       363 TF  364 (377)
T ss_pred             HH
Confidence            54

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.05  E-value=9.5e-10  Score=104.01  Aligned_cols=128  Identities=22%  Similarity=0.269  Sum_probs=117.5

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKA-SILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~-~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      .+.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.+...+ 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  284 (352)
T cd06174         206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP-  284 (352)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccch-
Confidence            3677999999999999999999999999999999999 99999999999999999999999999999999999999999 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                ....++.|..|+++|++..+..+....+|..+++.+.+.+.+   ..+|+..+
T Consensus       285 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---~~~~~~~~  334 (352)
T cd06174         285 --------------------------ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---TGGYGGVF  334 (352)
T ss_pred             --------------------------hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHH
Confidence                                      889999999999999999999999999999999999998874   34566554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.02  E-value=4.7e-09  Score=101.83  Aligned_cols=130  Identities=8%  Similarity=0.053  Sum_probs=95.2

Q ss_pred             HHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHH
Q 017823          176 MAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVM  255 (365)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~  255 (365)
                      ....+..+.............|.+.++.|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+.++..++.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~   93 (405)
T TIGR00891        15 SAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAA-SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLA   93 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            333333443344555566677888889999999998 8889999999999999999999999999999988888777776


Q ss_pred             HHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          256 IGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ....             ++.+...+...+.+.+.+... +....+..|.+|+++|+++.++.+..
T Consensus        94 ~~~~-------------~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~  144 (405)
T TIGR00891        94 CGFA-------------PGYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISG  144 (405)
T ss_pred             HHHh-------------ccHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHH
Confidence            6554             223344445555555554433 33355668999999999998887765

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.00  E-value=3.1e-09  Score=103.96  Aligned_cols=129  Identities=16%  Similarity=0.117  Sum_probs=104.1

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      ++++.|+.+.+.+.+...++..++.++.|+++||+|||+.+..+.....+.......+++.+.+++.|++.+++.|...+
T Consensus       245 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~  324 (393)
T PRK15011        245 NELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGG  324 (393)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            45677788999988888888888999999999999999988777666555555555667888888899999888887776


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....+..|..|+ +|+++.+..+....+|..+++.+++.+.+   .+||+..+
T Consensus       325 ---------------------------~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~---~~g~~~~~  373 (393)
T PRK15011        325 ---------------------------IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE---IWNYHAVF  373 (393)
T ss_pred             ---------------------------HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHH
Confidence                                       555667888874 69999999999999999999999998873   34676654

>TIGR00889 2A0110 nucleoside transporter

Probab=98.99  E-value=1.7e-09  Score=106.91  Aligned_cols=128  Identities=15%  Similarity=0.182  Sum_probs=108.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhhcchhhhhhh
Q 017823           14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF----NIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        14 ~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~----~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      +.++.+...++..++..++.++.|++.||+|||+.+..+.++.+++..+.....    +++.+++.+++.|++.+...+ 
T Consensus       249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~-  327 (418)
T TIGR00889       249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI-  327 (418)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH-
Confidence            346789999999999999999999999999999999999999888876666532    346677889999999998888 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHH-HHHHHHHHHHHHHhhhhccccCC---cchH
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQ-VCVATAVLSANLLNYGTQKIKVG---WGWR  165 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~~~---~gwr  165 (365)
                                                ....++.|.+|+++|+++.++.+ ...++|..+||++++.+.+..+.   +||+
T Consensus       328 --------------------------~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       328 --------------------------SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             --------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence                                      77888999999999999999997 67899999999999988865432   5687


Q ss_pred             HHH
Q 017823          166 ISL  168 (365)
Q Consensus       166 ~~f  168 (365)
                      ..|
T Consensus       382 ~~f  384 (418)
T TIGR00889       382 TMW  384 (418)
T ss_pred             HHH
Confidence            665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.97  E-value=9.5e-09  Score=101.97  Aligned_cols=117  Identities=15%  Similarity=0.068  Sum_probs=90.2

Q ss_pred             ccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          189 INVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       189 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      ......+.|.+.++.|.+..+.+ ...+...++..++.++.|++.||+|||+.+..+.++..++.++....         
T Consensus        39 ~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------  108 (434)
T PRK11663         39 RKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS---------  108 (434)
T ss_pred             hhhHHHhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH---------
Confidence            34556678899999999999988 88899999999999999999999999999999988888887766654         


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                          ++.+...+...+.+.+.+..+.+. ..+..|.+|+++|+++.++.+..
T Consensus       109 ----~~~~~l~~~~~l~g~~~g~~~~~~-~~~~~~~~~~~~rg~~~~~~~~~  155 (434)
T PRK11663        109 ----SSLWAFALLWVLNAFFQGWGWPVC-AKLLTAWYSRTERGGWWAIWNTA  155 (434)
T ss_pred             ----hHHHHHHHHHHHHHHHHHccchHH-HHHHHHhCCHHHHHHHHHHHHHH
Confidence                223333344444455555444433 45668999999999999888766

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.96  E-value=7.8e-09  Score=99.82  Aligned_cols=133  Identities=17%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHH
Q 017823          173 QFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVS  252 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~  252 (365)
                      +.......................|.+.++.|.++++.+ ...+...++..++.++.|+++||+|||+.+..+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQ-MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            333333333333333444444567888899999999998 8999999999999999999999999999999988888887


Q ss_pred             HHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          253 RVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.....             ++.+...+...+.+.+.+... +....+..|.+|+++|+++.++.+..
T Consensus        84 ~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (385)
T TIGR00710        84 SLGLALS-------------NNIETLLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPV  137 (385)
T ss_pred             HHHHHHH-------------ccHHHHHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            7776654             223334444444444444333 33355668999999999999887766

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00895 2A0115 benzoate transport

Probab=98.96  E-value=9.8e-09  Score=99.14  Aligned_cols=118  Identities=17%  Similarity=0.079  Sum_probs=89.0

Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      .......+.|.+.++.|.++.+.+ .......++..++.++.++++||+|||+.+..+..+..++.+.....        
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------  102 (398)
T TIGR00895        32 DLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--------  102 (398)
T ss_pred             HHHHHHhhHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--------
Confidence            344555678888889999998888 88888899999999999999999999999999888877777666543        


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                           ++.+...+...+.+++.+... +....+..|.+|+++|+++.++....
T Consensus       103 -----~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~  149 (398)
T TIGR00895       103 -----TNVTQLLILRFLAGLGLGGLM-PNLNALVSEYAPKRFRGTAVGLMFCG  149 (398)
T ss_pred             -----cchHHHHHHHHHHhcccccch-hhHHHHHHHHcCHHhhchhHhhHhhH
Confidence                 123334444555555544333 44466778999999999988887655

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.96  E-value=2.1e-09  Score=112.88  Aligned_cols=112  Identities=12%  Similarity=-0.053  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhc
Q 017823           18 LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFS   97 (365)
Q Consensus        18 ~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~   97 (365)
                      ......+..++..++.++.|+++||+|||++++.+.++.+++.++.+++++.+.+++.+++.|+..+...+         
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~---------  667 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWN---------  667 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH---------
Confidence            44556677799999999999999999999999999999999999999998888888899999988888888         


Q ss_pred             ccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           98 QTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                        ....+++|++|++.|++++++......+|.+++|.+++.+.
T Consensus       668 ------------------~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~  708 (742)
T TIGR01299       668 ------------------ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV  708 (742)
T ss_pred             ------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              88889999999999999999999999999999999987665

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.95  E-value=5.2e-08  Score=94.01  Aligned_cols=267  Identities=12%  Similarity=0.017  Sum_probs=169.9

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHH-HHHHHHHHHHHHHHh-----h-------hH--
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG-----RKASILV-RSTAFLAGSALRGAA-----F-------NI--   69 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~G-----rk~~l~~-~~~~~~~~~~~~~~a-----~-------~~--   69 (365)
                      |++++....+...+..++... ..+.+|+.+|+.+     ||..+++ +..+...+..+..++     .       +.  
T Consensus         9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~   87 (403)
T PF03209_consen    9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL   87 (403)
T ss_pred             HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence            344447777777777766554 5889999999999     7777654 666666666665553     2       11  


Q ss_pred             H--HHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHH
Q 017823           70 Y--MLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLS  147 (365)
Q Consensus        70 ~--~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i  147 (365)
                      +  ...+.-.+.|+|.+...+                           +..+++.|..|+|+|+++.++.....-+|..+
T Consensus        88 g~~~a~l~F~l~G~G~~~s~T---------------------------~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv  140 (403)
T PF03209_consen   88 GLALAALAFLLYGLGVHASGT---------------------------SFLALLADLAPEERRPRVVAIVWVMLIVGIIV  140 (403)
T ss_pred             HHHHHHHHHHHHHhhHhHhHH---------------------------HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHH
Confidence            2  233445567888877777                           88899999999999999999999999999999


Q ss_pred             HHHHhhhhccccCCcchHHHH----------------------------------------------HhHHHHHHHHHHH
Q 017823          148 ANLLNYGTQKIKVGWGWRISL----------------------------------------------KYRLQFVMAILIP  181 (365)
Q Consensus       148 ~~~~~~~~~~~~~~~gwr~~f----------------------------------------------~~~~~~~~~~~~~  181 (365)
                      +..+.+.+.+......-...+                                              +.-++++..+.+.
T Consensus       141 ~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~  220 (403)
T PF03209_consen  141 SAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLG  220 (403)
T ss_pred             HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHH
Confidence            988876554321100000000                                              1112222222221


Q ss_pred             HHHhcccccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hhCcchHHHHhHHHHHHHHHHHHHH
Q 017823          182 FFQHVTRINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILAD-RLGRKVLFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~l~~~~~~~~i~~~~~~~~  259 (365)
                      .+    +++.....+-.|- +.+|++..+.. .+....+.+..+|-...+++.. |.++|+....++....++...+...
T Consensus       221 t~----a~~~QD~iLEPygg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  221 TL----AFFMQDVILEPYGGEVFGMSVGETT-RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             HH----HHHhhHHHcCCchhHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            11    2222222222222 56799999988 8888889999999988888766 6777888888888888888777665


Q ss_pred             HhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          260 MADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ...          .+.+.......+++++.+..-.... ...-++.++++.|...|.-.+.
T Consensus       296 ~~~----------~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaa  345 (403)
T PF03209_consen  296 GPL----------GSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAA  345 (403)
T ss_pred             Hhc----------ccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHH
Confidence            311          2344555555555555443322222 2235777777777666655554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.95  E-value=2.9e-09  Score=105.02  Aligned_cols=127  Identities=13%  Similarity=0.109  Sum_probs=109.7

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhh
Q 017823           12 KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSV   91 (365)
Q Consensus        12 ~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~   91 (365)
                      +.+..+.|.+.++..++..++.++.|++.||+|||+.+..+..+..++..+.++++|++.+++.+++.|++.+...+   
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~---  334 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV---  334 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH---
Confidence            45567889999999999999999999999999999999999999999888888899999999999999998888777   


Q ss_pred             hhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH-HHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           92 WLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG-FQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                              ....++.|..|++.|+...+. ++....+|..+++.+.+.+.+   ..|||..|
T Consensus       335 ------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~---~~G~~~~f  385 (420)
T PRK09528        335 ------------------------GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD---SIGFQGTY  385 (420)
T ss_pred             ------------------------HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH---hhCchHHH
Confidence                                    667788899999999887655 677788999999999988874   34677665

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.95  E-value=6.1e-09  Score=99.94  Aligned_cols=116  Identities=20%  Similarity=0.039  Sum_probs=90.8

Q ss_pred             cchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCC
Q 017823          190 NVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG  269 (365)
Q Consensus       190 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  269 (365)
                      .......|.+.++.|.++.+.+ .......++..++.++.|+++||+|||+.+..+.++..++.......          
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------   79 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------   79 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHH-HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----------
Confidence            3444567777888999999998 89999999999999999999999999999999888888877777664          


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                         ++.+...+...+.+.+.+.. .+....+..|.+|+++|+++.++....
T Consensus        80 ---~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~  126 (399)
T TIGR00893        80 ---GAYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSA  126 (399)
T ss_pred             ---cCHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence               22444555555666665443 344456678999999999999987766

>PRK10054 putative transporter; Provisional

Probab=98.92  E-value=1.6e-08  Score=99.26  Aligned_cols=126  Identities=10%  Similarity=0.093  Sum_probs=89.5

Q ss_pred             HHHHHhcccccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHH
Q 017823          180 IPFFQHVTRINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGS  258 (365)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~  258 (365)
                      +..+....+......+.|.++ ++.|+++.+.+ ...+...+...++.++.|+++||+|||+.+..+.....++.+.+.+
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~   92 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIG-YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL   92 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence            333333445566666777776 56899999999 8888888999999999999999999999998888877777766655


Q ss_pred             HHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          259 IMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .             ++.+..++...+.+...+ ...+....+..|..|+++|+++.++.+..
T Consensus        93 ~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  140 (395)
T PRK10054         93 V-------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTM  140 (395)
T ss_pred             H-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence            4             122333333333333333 23444456668999999999998888766

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.91  E-value=2.7e-08  Score=98.10  Aligned_cols=132  Identities=14%  Similarity=-0.010  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHH
Q 017823          174 FVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSR  253 (365)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~  253 (365)
                      ......+.+...........+..|.+.+++|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+.++..++.
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~   87 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFG-LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS   87 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            33333444444344445555667777789999999999 89999999999999999999999999999999988888888


Q ss_pred             HHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          254 VMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.....             ++.+...+.-.+.+++.+.. .|....+.+|.+|+++|+++.++.+..
T Consensus        88 ~~~~~~-------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~  140 (412)
T TIGR02332        88 TATMFA-------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIA  140 (412)
T ss_pred             HHHHHh-------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            877664             22334444455555555433 344455679999999999998888765

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.90  E-value=6.4e-08  Score=96.48  Aligned_cols=253  Identities=14%  Similarity=0.099  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhcc
Q 017823           19 TTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQ   98 (365)
Q Consensus        19 ~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~   98 (365)
                      +.......+...+.++..|.++||+|||..+........+......+.. +|.++    +.|+..+....          
T Consensus        65 ~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~----------  129 (463)
T KOG2816|consen   65 GVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAI----------  129 (463)
T ss_pred             hHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhh----------
Confidence            3333345678889999999999999999999999999988888877766 33333    55554443333          


Q ss_pred             cccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH----------
Q 017823           99 TCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL----------  168 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f----------  168 (365)
                                     ++...++++|....++|....++.......+..++|.++....+..+   .-..+          
T Consensus       130 ---------------~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~---~a~~f~ia~~~~~~~  191 (463)
T KOG2816|consen  130 ---------------FSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG---IALVFLIAAASGILS  191 (463)
T ss_pred             ---------------hhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC---chHHHHHHHHHHHHH
Confidence                           11788889999999999999999999999999999999887664321   21221          


Q ss_pred             ---------------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHH-HH
Q 017823          169 ---------------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLF-RT  202 (365)
Q Consensus       169 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  202 (365)
                                                                   +.+|..+......++..........-..+.++ ..
T Consensus       192 ~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~  271 (463)
T KOG2816|consen  192 LLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK  271 (463)
T ss_pred             HHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee
Confidence                                                         12222233233333322221111110112333 34


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHHHHHHH-HHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHH
Q 017823          203 IKLSESTSLLMSAIVTGSLGTISTSLSM-ILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVL  281 (365)
Q Consensus       203 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (365)
                      +++++++.. ...+...+...++..+.. .+...+|.|+....+.....+.....++..             ..|.....
T Consensus       272 f~w~~~~~s-~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-------------~~w~~~~~  337 (463)
T KOG2816|consen  272 FGWNKKEFS-DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-------------ETWMMFAA  337 (463)
T ss_pred             cCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------cchhhhHH
Confidence            688999888 888888889999988887 778888999988888888888888888762             22222222


Q ss_pred             HHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          282 ICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..+.  .++....|......+...+++++|+++++...+
T Consensus       338 ~v~~--~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i  374 (463)
T KOG2816|consen  338 GVVV--ALAGIVFPAIRAFASILVSPEEQGKVFGIISGI  374 (463)
T ss_pred             HHHH--HhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence            2221  122233444456668888999999999999888

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.89  E-value=5.1e-09  Score=100.33  Aligned_cols=115  Identities=14%  Similarity=0.038  Sum_probs=87.6

Q ss_pred             cchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCC
Q 017823          190 NVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG  269 (365)
Q Consensus       190 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  269 (365)
                      .......|.+.++.|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.++....          
T Consensus        12 ~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------   80 (379)
T TIGR00881        12 KNFALAMPYLVEEIGLSKTDLG-LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS----------   80 (379)
T ss_pred             HhhhhhhHHHHHHhCCCHhHHH-HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence            4445567888888999999998 89999999999999999999999999999999998888888777665          


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVA  319 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  319 (365)
                         ++.+...+...+.+.+.+.. .+....+..|.+|+++|+++.++.+.
T Consensus        81 ---~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~  126 (379)
T TIGR00881        81 ---TSLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNC  126 (379)
T ss_pred             ---hhHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhc
Confidence               22344444555555554433 34446677899999999876665443

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.88  E-value=6e-08  Score=95.46  Aligned_cols=130  Identities=15%  Similarity=0.128  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHH
Q 017823          176 MAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVM  255 (365)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~  255 (365)
                      .......+..........+..|.+.++.|.++.+.. ...+...++..++.++.|+++||+|||+.+..+.+...++...
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~   99 (426)
T PRK12307         21 FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA-FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL   99 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            333333333333444455566777788999999988 8889999999999999999999999999999999998888877


Q ss_pred             HHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          256 IGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ....             +..+...+.-.+.+.+.+.. .+....+..|.+|+++|+++.++....
T Consensus       100 ~~~~-------------~~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~  150 (426)
T PRK12307        100 SGLA-------------SGVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKASAFLVSG  150 (426)
T ss_pred             HHHH-------------hHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhhhHHHHH
Confidence            6665             22344445555555554433 333455668999999999988886655

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.87  E-value=1.2e-08  Score=98.18  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=104.7

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      ++++.++.+.+++.+.......++.++.|++.||+|||+.+..+..+..+......+.++.+.+.+.+++.|++.+...+
T Consensus       228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  307 (375)
T TIGR00899       228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAG  307 (375)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788999888887777888899999999999999998887776666655666677888888899999999888887


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                 ....++.|..|+ +++++.+..+....+|..+++.+++.+.+   ..||+..+
T Consensus       308 ---------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~---~~g~~~~~  356 (375)
T TIGR00899       308 ---------------------------IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE---RWSYHAVY  356 (375)
T ss_pred             ---------------------------HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchhHH
Confidence                                       666777888765 56799999999999999999999988773   34566554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.87  E-value=1.7e-08  Score=98.38  Aligned_cols=133  Identities=12%  Similarity=0.099  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHH
Q 017823          173 QFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVS  252 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~  252 (365)
                      |++.......++...+........|.+.++.|.++.+.+ .......++..++.++.|+++||+|||+.+..+.+...++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~   81 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA   81 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence            344555555555555556666778888899999999888 8888889999999999999999999999999988888877


Q ss_pred             HHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          253 RVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .......             ++.+...+...+.+.+.+... +....+..|.+|+++|+++.++.+..
T Consensus        82 ~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~  135 (392)
T PRK10473         82 SLLCSLA-------------ETSSLFLAGRFLQGIGAGCCY-VVAFAILRDTLDDRRRAKVLSLLNGI  135 (392)
T ss_pred             HHHHHHh-------------CcHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            7766553             112233333344444433322 33455668999999999998887765

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.87  E-value=1.3e-08  Score=99.50  Aligned_cols=121  Identities=13%  Similarity=0.080  Sum_probs=105.8

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVS   90 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~   90 (365)
                      .|++..+.+.+.+...++..++.++.|++.||+|||+.+..+.....++..+..+.++.+.+.+.-++.|++.+...+  
T Consensus       250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--  327 (406)
T PRK11551        250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQS--  327 (406)
T ss_pred             CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHH--
Confidence            477788999999999999999999999999999999999887777777766667777887787888888888877777  


Q ss_pred             hhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc
Q 017823           91 VWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  158 (365)
                                               ....+..|..|+++|++..++.+....+|..+++.+.+.+.+.
T Consensus       328 -------------------------~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        328 -------------------------VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             -------------------------HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence                                     7777889999999999999999999999999999999888743

>PRK12382 putative transporter; Provisional

Probab=98.86  E-value=6.2e-09  Score=101.47  Aligned_cols=122  Identities=15%  Similarity=0.115  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhh
Q 017823           17 LLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYF   96 (365)
Q Consensus        17 ~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~   96 (365)
                      +.+...+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++.+.+++++++.|++.+...+        
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~--------  321 (392)
T PRK12382        250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFP--------  321 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHH--------
Confidence            345566677788899999999999999999999999988888888888888888888999999999998888        


Q ss_pred             cccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           97 SQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                         .....+.|..|+++|++..++.+....+|..+++.+.+.+.+   ..||+..+
T Consensus       322 -------------------~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~---~~g~~~~~  371 (392)
T PRK12382        322 -------------------ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT---SFGYPSVF  371 (392)
T ss_pred             -------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCchHHH
Confidence                               667777899999999999999999999999999999988874   34576665

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.85  E-value=1.4e-08  Score=99.21  Aligned_cols=121  Identities=14%  Similarity=0.049  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhc
Q 017823           18 LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFS   97 (365)
Q Consensus        18 ~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~   97 (365)
                      .+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+         
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------  330 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLP---------  330 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHH---------
Confidence            45666677788889999999999999999999998888888887777788888899999999999999888         


Q ss_pred             ccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           98 QTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                        ....++.+..|+++||+..+..+....+|..+|+.+++.+.   +..||+..|
T Consensus       331 ------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~---~~~g~~~~f  380 (408)
T PRK09874        331 ------------------AVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS---ANYGFRAVF  380 (408)
T ss_pred             ------------------HHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH---hhcchhHHH
Confidence                              77777788889999999999999999999999999999887   334576654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.85  E-value=1.3e-08  Score=99.45  Aligned_cols=122  Identities=18%  Similarity=0.155  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhh
Q 017823           17 LLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYF   96 (365)
Q Consensus        17 ~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~   96 (365)
                      +.++..+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+.+++.+++.|++.+...+        
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~--------  321 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP--------  321 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH--------
Confidence            445666778888999999999999999999999988888888888888888888888999999999998888        


Q ss_pred             cccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           97 SQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                         .......|..|+++|+++.++.+....+|..+++.+.+.+.+   ..||+..+
T Consensus       322 -------------------~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~  371 (399)
T PRK05122        322 -------------------ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS---WFGYPSIF  371 (399)
T ss_pred             -------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHH
Confidence                               666667788999999999999999999999988888777763   34566544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.84  E-value=5.4e-08  Score=97.08  Aligned_cols=117  Identities=13%  Similarity=0.067  Sum_probs=84.6

Q ss_pred             hhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 017823          192 ISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       192 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (365)
                      .....|.+.++ |.+..+.+ ...+...++..++.++.|+++||+|||+.+..+.++..++.+.+.....         .
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g-~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~  116 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------A  116 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------c
Confidence            34556776666 99999998 8899999999999999999999999999999998888888776665410         0


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..+.+...+...+.+++.+..+.+.. ....|.+|+++|+++.++.+..
T Consensus       117 ~~~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~  164 (452)
T PRK11273        117 TSSIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCA  164 (452)
T ss_pred             cccHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHH
Confidence            11233334444455555554444443 3457899999999998876544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.83  E-value=1.4e-08  Score=96.91  Aligned_cols=120  Identities=15%  Similarity=0.033  Sum_probs=108.6

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhcchhhhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFN-IYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~-~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      ++.+..+.+.+.+...++..++.++.+++.||+|||+.+..+..+.+++.....+.++ ++.+.+..++.|++.+...+ 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  320 (365)
T TIGR00900       242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV-  320 (365)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH-
Confidence            5777899999999999999999999999999999999998888888888777777774 88888999999999999988 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                                                ....++.|..|+++|++..+..+....+|..+++.+++.+.+
T Consensus       321 --------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       321 --------------------------PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             --------------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      888889999999999999999999999999999999888763

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.81  E-value=1.9e-08  Score=96.89  Aligned_cols=123  Identities=11%  Similarity=0.037  Sum_probs=98.0

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--HHHHH--hhhHHHHHHHHHHhhcchh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS--ALRGA--AFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~--~~~~~--a~~~~~~~~~r~l~G~~~g   84 (365)
                      ++.+.+..+.+...+...++..++.++.|++.||+|||+.+.....+..+..  ....+  .++.+.+....++.|++.+
T Consensus       248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  327 (394)
T TIGR00883       248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG  327 (394)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            3456778899999999999999999999999999999998775554443333  22222  2466777788889999888


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH-HHHHHHHHHHHHHHHhhhhccc
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG-FQVCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~  158 (365)
                      ...+                           ....++.|.+|+++|+++.+. .+.+..+|..++|.+++.+.+.
T Consensus       328 ~~~~---------------------------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~  375 (394)
T TIGR00883       328 MYTG---------------------------PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM  375 (394)
T ss_pred             HHhh---------------------------hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence            8888                           888889999999999999987 4566778898999999888744

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.81  E-value=3e-08  Score=96.60  Aligned_cols=121  Identities=9%  Similarity=0.077  Sum_probs=111.2

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      +.|.++++.|...+...++..++.++.+++.||+|+|+.+..+.+...+..+..++++|++.++..+++.|+..+...+ 
T Consensus       234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~-  312 (382)
T TIGR00902       234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHL-  312 (382)
T ss_pred             HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH-
Confidence            3678899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHH-HHHHHHHHHHHHHhhhhccc
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQ-VCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~  158 (365)
                                                ....++.+. |+++|++..+.++ ...++|..+++.+++.+.+.
T Consensus       313 --------------------------~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~  355 (382)
T TIGR00902       313 --------------------------AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT  355 (382)
T ss_pred             --------------------------HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                      888888888 8999999999986 57889999999999998843

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.77  E-value=1e-07  Score=92.87  Aligned_cols=118  Identities=10%  Similarity=-0.052  Sum_probs=88.2

Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      .........|.+.++.|.+.++.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.++....        
T Consensus        18 ~~~~~~~~l~~~~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--------   88 (382)
T PRK10091         18 AEFGIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--------   88 (382)
T ss_pred             hHHHHHhChHHHHHHcCCCHHHHh-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--------
Confidence            334555577888899999999988 89999999999999999999999999999999998888888776664        


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                           ++.+...+...+.+.+.+... +.......|.+|+++|+++.++....
T Consensus        89 -----~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (382)
T PRK10091         89 -----SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSG  135 (382)
T ss_pred             -----CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHH
Confidence                 223444444455555444332 33345568899999998888765543

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.77  E-value=3e-08  Score=99.66  Aligned_cols=129  Identities=9%  Similarity=-0.120  Sum_probs=98.7

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhhcchhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA--FNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a--~~~~~~~~~r~l~G~~~g~~   86 (365)
                      ++.|++..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..+.....  .+.+.+....++.+......
T Consensus       304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (496)
T PRK03893        304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI  383 (496)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc
Confidence            4677889999999999999999999999999999999999888877666655443333  33444444455444333333


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                      .+                           ..+.++.|..|+++|++.+++.+....+|..+|+.+++.+.+   ..||+.
T Consensus       384 ~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~---~~g~~~  433 (496)
T PRK03893        384 SG---------------------------LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ---RLDLGT  433 (496)
T ss_pred             ch---------------------------hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc---cCChHH
Confidence            44                           556678899999999999999999999999999999998884   345654


Q ss_pred             H
Q 017823          167 S  167 (365)
Q Consensus       167 ~  167 (365)
                      .
T Consensus       434 ~  434 (496)
T PRK03893        434 A  434 (496)
T ss_pred             H
Confidence            4

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.77  E-value=6.4e-08  Score=96.11  Aligned_cols=117  Identities=14%  Similarity=0.055  Sum_probs=82.7

Q ss_pred             hhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 017823          192 ISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       192 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (365)
                      .....|.+.+ .|.++++.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.+......        .. 
T Consensus        46 ~~~~~p~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------~~-  114 (438)
T TIGR00712        46 FALAMPYLVE-QGFSKGELG-FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP--------WA-  114 (438)
T ss_pred             HHhhhHHHHH-cCCCHhHhH-HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc--------cc-
Confidence            3445665554 699999998 899999999999999999999999999998888877777766654431        00 


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..+.+...+...+.+++.+..+.+. .....|.+|+++|+++.++.+..
T Consensus       115 ~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~  162 (438)
T TIGR00712       115 TSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCA  162 (438)
T ss_pred             cchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHH
Confidence            1122233333444455555444444 34457999999999999987665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.76  E-value=1.4e-09  Score=110.60  Aligned_cols=220  Identities=17%  Similarity=0.120  Sum_probs=3.0

Q ss_pred             ccCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh------------------
Q 017823            6 NISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF------------------   67 (365)
Q Consensus         6 ~~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~------------------   67 (365)
                      .+++.+++++++.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.++|+++.++-+                  
T Consensus        28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~  107 (539)
T PF03137_consen   28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS  107 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence            35677888899999999999999999999999999999999999999999999998876510                  


Q ss_pred             --------------------------------hHHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhccc
Q 017823           68 --------------------------------NIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQ  115 (365)
Q Consensus        68 --------------------------------~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (365)
                                                      -++.++++.++.|+|....++                           
T Consensus       108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t---------------------------  160 (539)
T PF03137_consen  108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT---------------------------  160 (539)
T ss_dssp             --------------------------------------------SSS---------------------------------
T ss_pred             ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc---------------------------
Confidence                                            136788899999999999999                           


Q ss_pred             ccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccC---------------Ccc----hHHHH--------
Q 017823          116 SVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKV---------------GWG----WRISL--------  168 (365)
Q Consensus       116 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~---------------~~g----wr~~f--------  168 (365)
                      ...+|+-|..++|+-+...|+......+|.++|.++++...+...               +..    |-.-|        
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~  240 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF  240 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988876653211               111    22222        


Q ss_pred             ------------------------------------------------------------HhHHHHHHHHHHHHHHhccc
Q 017823          169 ------------------------------------------------------------KYRLQFVMAILIPFFQHVTR  188 (365)
Q Consensus       169 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~  188 (365)
                                                                                  ..+++.++...+........
T Consensus       241 l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~  320 (539)
T PF03137_consen  241 LSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFI  320 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence                                                                        12334455555555555667


Q ss_pred             ccchhhcHHHHH-HHcCCCcchhhHHHHH-HHHHHHHHHHHHHHHHHhhhCc--chHHHHhHHHHHHHH
Q 017823          189 INVISFYAPVLF-RTIKLSESTSLLMSAI-VTGSLGTISTSLSMILADRLGR--KVLFLVGGIQMLVSR  253 (365)
Q Consensus       189 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~gr--r~~l~~~~~~~~i~~  253 (365)
                      ......|.|.|+ .+++.+++.+. .+.. +.--+..+|.+++|++.+|++-  |+.+....+...++.
T Consensus       321 ~~G~~tF~pKylE~QF~~sas~A~-~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~  388 (539)
T PF03137_consen  321 VSGFATFLPKYLESQFGLSASQAS-LLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV  388 (539)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHH-HHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence            778888999999 56788888887 4443 3334677899999999999853  444444444444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.76  E-value=1.9e-07  Score=91.50  Aligned_cols=112  Identities=10%  Similarity=0.061  Sum_probs=87.6

Q ss_pred             hcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchh
Q 017823          194 FYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIG  273 (365)
Q Consensus       194 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  273 (365)
                      ...|.+.++.|.++++.+ ...+...+...+++++.|.++||+|||+.+..+.++..++.+.....             +
T Consensus        41 ~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------------~  106 (394)
T PRK10213         41 SLLTPMAQDLGISEGVAG-QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-------------N  106 (394)
T ss_pred             hhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-------------C
Confidence            346777789999999998 88888999999999999999999999999999999988877776554             2


Q ss_pred             hHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          274 YAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+..++...+.+.+.+.. .|....+++|.+|+++|+++.++....
T Consensus       107 ~~~~l~~~r~l~G~~~g~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~  152 (394)
T PRK10213        107 SFSLLLIGRACLGLALGGF-WAMSASLTMRLVPPRTVPKALSVIFGA  152 (394)
T ss_pred             hHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHcCHhHHHHHHHHHHHH
Confidence            3444555555555555443 344556668999999999999887765

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.76  E-value=9.4e-08  Score=94.71  Aligned_cols=122  Identities=15%  Similarity=0.190  Sum_probs=106.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHH-HHh---h-hHHHHHHHHHHhhcc
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR-KASILVRSTAFLAGSALR-GAA---F-NIYMLIFGRVLLGVG   82 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Gr-k~~l~~~~~~~~~~~~~~-~~a---~-~~~~~~~~r~l~G~~   82 (365)
                      -|.+-+.+..|++.++..++.+++++..|+...|.++ |+.++.+..+..+|+++. +..   + .-+.++++|++.|+|
T Consensus        64 lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg  143 (488)
T KOG2325|consen   64 LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG  143 (488)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC
Confidence            3466678999999999999999999999999999997 888999999999999988 333   3 578999999999999


Q ss_pred             hhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc
Q 017823           83 IGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  158 (365)
                      .|....                            .-.|+++...+++|.++.+....+..+|..+||.++..+...
T Consensus       144 ~~n~a~----------------------------lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  144 VGNFAV----------------------------LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             cccHHH----------------------------HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            887765                            778888888899999999999999999999999988776543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.75  E-value=8.8e-08  Score=95.77  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=92.1

Q ss_pred             cccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcC
Q 017823          186 VTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIG  265 (365)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~  265 (365)
                      ...........|.+.++.|.++++.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+.....      
T Consensus        15 ~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------   87 (485)
T TIGR00711        15 VLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA------   87 (485)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc------
Confidence            33445566678999999999999888 89999999999999999999999999999999988888877766543      


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          266 DHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                             ++.+..++...+.+.+.+. ..+....+..|.+|+++|+++.++....
T Consensus        88 -------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~  134 (485)
T TIGR00711        88 -------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLT  134 (485)
T ss_pred             -------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence                   2233444444554554433 3445566778999999999999987665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.75  E-value=2.8e-07  Score=92.20  Aligned_cols=114  Identities=14%  Similarity=0.034  Sum_probs=78.2

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHH
Q 017823          204 KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLIC  283 (365)
Q Consensus       204 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (365)
                      +.++.+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.+............ ...+.......++.-+
T Consensus        51 ~~~~~~~~-~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~R~  128 (479)
T PRK10077         51 SAANSLLG-FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSI-GPDNTGYVPEFVIYRI  128 (479)
T ss_pred             cCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccc-cccchhHHHHHHHHHH
Confidence            67778888 889999999999999999999999999999999888877776665421000000 0001111223344445


Q ss_pred             HHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          284 VYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+++.+... +....+.+|.+|+++|+++.++....
T Consensus       129 l~G~~~g~~~-~~~~~~i~e~~~~~~rg~~~~~~~~~  164 (479)
T PRK10077        129 IGGIGVGLAS-MLSPMYIAEIAPAHIRGKLVSFNQFA  164 (479)
T ss_pred             HHhhhHhHHh-hHHHHHHHhhCChhhhhHHHHHHHHH
Confidence            5555554433 34456679999999999988886554

>PRK03699 putative transporter; Provisional

Probab=98.75  E-value=1.7e-07  Score=91.72  Aligned_cols=116  Identities=11%  Similarity=-0.017  Sum_probs=86.5

Q ss_pred             ccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          189 INVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       189 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      ........|.+.++.|.++++.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.+.....         
T Consensus        23 ~~~~g~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~---------   92 (394)
T PRK03699         23 VIVTGMVMGPIAEYFNLPVSSMS-NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS---------   92 (394)
T ss_pred             HHHHhhhhHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc---------
Confidence            44555667888899999999998 88888999999999999999999999999998888777777666553         


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHH
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVA  319 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  319 (365)
                          ++.+...+...+.+.+.+...+. ...+..|.+|+++|+++.+..+.
T Consensus        93 ----~~~~~~~~~~~l~G~~~g~~~~~-~~~~i~~~~~~~~r~~~~~~~~~  138 (394)
T PRK03699         93 ----HSLALFSIAMFVLGVVSGITMSI-GTFLITHVYEGKQRGSRLLFTDS  138 (394)
T ss_pred             ----chHHHHHHHHHHHHHhhHhhccc-hhHHhhhhcccchHHHHHHHHHH
Confidence                22334444455555555444433 34556899999999988776543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.75  E-value=4e-08  Score=95.63  Aligned_cols=125  Identities=12%  Similarity=0.052  Sum_probs=99.9

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVS   90 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~   90 (365)
                      .+.+.++.+...+...++..+++++.|++.||+|||+.+..+..+..++.....  + ........++.|++.....|  
T Consensus       230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p--  304 (381)
T PRK03633        230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYP--  304 (381)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHH--
Confidence            467788999999999999999999999999999999999888877777655432  2 23344577788887777777  


Q ss_pred             hhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           91 VWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                               .....+.|..|+++++...+......++|..+||.+++.+.+.   .+|+..|
T Consensus       305 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---~g~~~~f  354 (381)
T PRK03633        305 -------------------------VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---YSDNLLF  354 (381)
T ss_pred             -------------------------HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHH
Confidence                                     7777788999888888888888889999999999999988743   3455443

>PRK03545 putative arabinose transporter; Provisional

Probab=98.74  E-value=7.3e-08  Score=94.01  Aligned_cols=128  Identities=15%  Similarity=0.103  Sum_probs=100.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS-ALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~-~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      ++.|.|..+.+++.+...++..+++++.|++.||+|||+... +..+..++. .+....++.+.+.++.++.|++.+...
T Consensus       234 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~  312 (390)
T PRK03545        234 QVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIG  312 (390)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcch
Confidence            346778899999999999999999999999999999887654 444333333 334556778888889999999877666


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           .....+.|..| ++|+++++.......+|..+|+.+++.+.   ++.|++..
T Consensus       313 ~---------------------------~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~---~~~g~~~~  361 (390)
T PRK03545        313 L---------------------------AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS---LHLGLSSI  361 (390)
T ss_pred             H---------------------------HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccChhHH
Confidence            6                           45556667765 68899999999999999999999999888   44567766


Q ss_pred             H
Q 017823          168 L  168 (365)
Q Consensus       168 f  168 (365)
                      +
T Consensus       362 ~  362 (390)
T PRK03545        362 G  362 (390)
T ss_pred             H
Confidence            5

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.73  E-value=7.5e-08  Score=97.13  Aligned_cols=119  Identities=15%  Similarity=0.114  Sum_probs=88.6

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHhhcchhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSAL---RGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~---~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      +.|++..+.+...+...++..++.++.|+++||+|||+.+..+.++..++...   ...+++...+.++|++.|++.+..
T Consensus       280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  359 (490)
T PRK10642        280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF  359 (490)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            35666777788888888999999999999999999999988877654433332   223355777888999998877766


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH-HHHHHHHHHHHHHHHhhhhc
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG-FQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~  156 (365)
                      ..                           ....++.|.+|++.|+...+. ++.+. ++..++|.+...+.
T Consensus       360 ~g---------------------------~~~~~~~~~~p~~~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~  402 (490)
T PRK10642        360 TG---------------------------VMASTLPAMFPTHIRYSALAAAFNISV-LVAGLTPTLAAWLV  402 (490)
T ss_pred             HH---------------------------HHHHHHHHHCCCccchHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            66                           566677899999999999887 45544 44456666665554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.72  E-value=4.3e-08  Score=96.49  Aligned_cols=121  Identities=11%  Similarity=0.038  Sum_probs=107.4

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      ..|.++.+.+++.+...++..++.++.+++.||.++|+.+..+..+..++.++..+.++.+...++.++.|++.+...+ 
T Consensus       253 ~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  331 (417)
T PRK10489        253 VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSL-  331 (417)
T ss_pred             ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH-
Confidence            3677789999999999999999999999999998888888888888888888888888888888899999998888777 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                                                ...+++.|..|+++||+++++......+|..+|+.+.+.+.+
T Consensus       332 --------------------------~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~  373 (417)
T PRK10489        332 --------------------------LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA  373 (417)
T ss_pred             --------------------------HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence                                      666778899999999999999999999999999999988874

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.72  E-value=2.3e-07  Score=89.87  Aligned_cols=131  Identities=15%  Similarity=0.104  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHH
Q 017823          175 VMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRV  254 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~  254 (365)
                      ++.+.+..|...+......-..|.+.+++|.++..++ ...+.+..+..+++++...+.||+.||++++....++.++.+
T Consensus        15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG-~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~   93 (394)
T COG2814          15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAG-QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL   93 (394)
T ss_pred             HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence            3344444444456667777789999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          255 MIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +..+.             ++.....+.-.+.+...+..|+ +...+..++.|+++|+++.++...-
T Consensus        94 l~alA-------------p~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G  145 (394)
T COG2814          94 LSALA-------------PSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTG  145 (394)
T ss_pred             HHHHh-------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHH
Confidence            98886             3345556666666666655444 4467779999999999999988876

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.72  E-value=6.1e-08  Score=97.11  Aligned_cols=122  Identities=14%  Similarity=-0.027  Sum_probs=91.5

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHhhcchhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSAL--RGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~--~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      +++|+|..+.++..+...++..++.++.|+++||+|||+.+.....+..++..+  ....++.+...+.+++.|+.....
T Consensus       287 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  366 (467)
T PRK09556        287 QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGP  366 (467)
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhH
Confidence            456788999999999999999999999999999999998876654444433322  223356666778888888654333


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHH-HHHHHHHHhhhhcc
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVAT-AVLSANLLNYGTQK  157 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~  157 (365)
                      ..                           .......|..|+++||.+.++.+....+ |..+++.+.+.+.+
T Consensus       367 ~~---------------------------~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        367 QL---------------------------LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HH---------------------------HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            32                           2224456999999999999999888776 77888888888876

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.71  E-value=5.6e-08  Score=93.94  Aligned_cols=113  Identities=16%  Similarity=0.056  Sum_probs=86.3

Q ss_pred             hhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCch
Q 017823          193 SFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI  272 (365)
Q Consensus       193 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  272 (365)
                      ....|.+.++.|.++++.+ ...+...++..++.++.|+++||+|||+.+..+.++..++.......             
T Consensus        11 ~p~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------------   76 (377)
T PRK11102         11 LPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------------   76 (377)
T ss_pred             hccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------------
Confidence            3467788888999999998 88899999999999999999999999999999988888888777654             


Q ss_pred             hhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          273 GYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ++.+...+...+.+++.+.. .+....+..|.+|+++|+++.++.+..
T Consensus        77 ~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (377)
T PRK11102         77 QTIDQLIYMRFLHGLAAAAA-SVVINALMRDMFPKEEFSRMMSFVTLV  123 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            12233344444444444332 333455668999999999999887665

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.69  E-value=9.5e-08  Score=90.75  Aligned_cols=116  Identities=20%  Similarity=0.221  Sum_probs=87.4

Q ss_pred             cchhhcHH-HHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          190 NVISFYAP-VLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       190 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      .......| .+.++.|.++.+.+ ...+...+...++.++.|+++||+|||+.+..+.++..++.+...+.         
T Consensus        13 ~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------   82 (352)
T PF07690_consen   13 SIISPALPLYLAEELGLSPSQIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---------   82 (352)
T ss_dssp             HHHHHHHH-HHHCCSTTTSHCHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---------
Confidence            34445566 56678899999999 89999999999999999999999999999999988888884444432         


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                          ++.+..++..++.+.+.+.. .+....+..|.+|+++|+++.++....
T Consensus        83 ----~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~  129 (352)
T PF07690_consen   83 ----SNFWLLLIARFLLGIGSGFF-SPASNALIADWFPPEERGRAFGILSAG  129 (352)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCTCCHHHHHHHHHHH
T ss_pred             ----hhHHHHhhhccccccccccc-cccccccccccchhhhhhhccccccch
Confidence                11334555555666655443 344456678999999999999988887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=1.6e-06  Score=85.74  Aligned_cols=265  Identities=19%  Similarity=0.188  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhccccc
Q 017823           22 TSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCD  101 (365)
Q Consensus        22 ~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~  101 (365)
                      .++.+..+.+.+++++.+.|+.|.|+.++++......-....-+ +|-+.++++-++.|+|.+..+.             
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~-------------  121 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWT-------------  121 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheec-------------
Confidence            77888899999999999999999999999999998877666544 5577899999999999999888             


Q ss_pred             chhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccC-----CcchH-----------
Q 017823          102 LLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKV-----GWGWR-----------  165 (365)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-----~~gwr-----------  165 (365)
                                    .--.|++|..+++++.+..++.......+.++|...-.......+     ..+-+           
T Consensus       122 --------------GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (461)
T KOG3098|consen  122 --------------GQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDF  187 (461)
T ss_pred             --------------ccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhH
Confidence                          888899999999999999988888777777777665544332211     11111           


Q ss_pred             ---HHH----------------------------H--------------hHHHHHHHHHHHHHHhccc-ccchhhcHHHH
Q 017823          166 ---ISL----------------------------K--------------YRLQFVMAILIPFFQHVTR-INVISFYAPVL  199 (365)
Q Consensus       166 ---~~f----------------------------~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  199 (365)
                         ..+                            .              .+.+.++.+...++..... ......|...+
T Consensus       188 ~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i  267 (461)
T KOG3098|consen  188 EIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCI  267 (461)
T ss_pred             HHHHHHHHHHHHHHHHhhheeecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhh
Confidence               001                            0              0001112222222211111 11111122222


Q ss_pred             H--HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh---hCcchHHHHhHHHHHHHHHHHHHHHhhhcC----CCCC-
Q 017823          200 F--RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADR---LGRKVLFLVGGIQMLVSRVMIGSIMADQIG----DHGG-  269 (365)
Q Consensus       200 ~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~grr~~l~~~~~~~~i~~~~~~~~~~~~~~----~~~~-  269 (365)
                      .  +..+.+............+.+..++....+.+.+|   +||++.+.++.++-.+..++.-.....+..    +..+ 
T Consensus       268 ~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~  347 (461)
T KOG3098|consen  268 SFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPL  347 (461)
T ss_pred             hhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCccccc
Confidence            1  23444444433356667778888888888888755   578888888887777777776665432221    1111 


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                      ...+......++..+.+.+-+ .+....+.+....+|+ .|..+.++
T Consensus       348 ~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~~~~~-~~~~~fsi  392 (461)
T KOG3098|consen  348 LFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIALLYPD-DRAQAFSL  392 (461)
T ss_pred             ccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHHHhcC-chHHHHHH
Confidence            111123344555555555543 4455556666788854 45544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.69  E-value=2.7e-07  Score=93.24  Aligned_cols=131  Identities=16%  Similarity=0.094  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHH
Q 017823          175 VMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRV  254 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~  254 (365)
                      +..+.+..+....-......-.|.+.+++|.+.++.. +..+.+.++...+.++.|+++||+|||+.+..+..+..++.+
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~-~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~   86 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL-WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3334444444344445566678999999999998888 888899999999999999999999999999999999888888


Q ss_pred             HHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccC-CChhhhhHHHHHHHHH
Q 017823          255 MIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSEN-FPLEIISAGQIITVAA  320 (365)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~  320 (365)
                      ..+..             ++.+..++.-.+.+.+.+.. .|.......+. .|+++|+++.|+....
T Consensus        87 ~~~~a-------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~  139 (495)
T PRK14995         87 AAAFS-------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAV  139 (495)
T ss_pred             HHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            87764             22444455545555554433 23223333344 4789999998887666

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.67  E-value=1.6e-07  Score=91.55  Aligned_cols=115  Identities=22%  Similarity=0.113  Sum_probs=96.1

Q ss_pred             chhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 017823          191 VISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGF  270 (365)
Q Consensus       191 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  270 (365)
                      .+..-.+..-+.+|.+++..+ ++.....+...+.+++.|++.||+.||+++.+|..+-.++.+..++.           
T Consensus        51 ~iagv~~~v~~~fni~~s~~G-ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-----------  118 (493)
T KOG1330|consen   51 TIAGVLKEVQTYFNISDSELG-LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-----------  118 (493)
T ss_pred             hhhhhhHHHHHhcCCCchhcc-chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-----------
Confidence            333344455566799999999 99999999999999999999999999999999999999888888876           


Q ss_pred             chhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          271 SIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                        ...|..+++-.+-+.+-+ .+.|+...+++|.+|.++|++..++.+..
T Consensus       119 --~~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~  165 (493)
T KOG1330|consen  119 --NHFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFA  165 (493)
T ss_pred             --HHHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhh
Confidence              446677777777777765 56677677789999999999999999988

>TIGR00897 2A0118 polyol permease family

Probab=98.65  E-value=4e-07  Score=89.35  Aligned_cols=122  Identities=15%  Similarity=0.070  Sum_probs=84.1

Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      +......+.|.+.++.|.++.+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.+.......      
T Consensus        28 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~------  100 (402)
T TIGR00897        28 GDGLEQGWLSPFLKALGLSPQQSA-SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL------  100 (402)
T ss_pred             hhhhHHHhHHHHHHHhCCCHHHhH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            333444567777888999999999 8899999999999999999999999999999988888777654432210      


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                         ...+.+...+...+.+.+.+.. .+.......|.+|+++|+++.|+.++.
T Consensus       101 ---~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~  149 (402)
T TIGR00897       101 ---GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAV  149 (402)
T ss_pred             ---cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence               1112233333344444443322 222233446889999999999886654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.65  E-value=6.2e-07  Score=87.87  Aligned_cols=114  Identities=16%  Similarity=0.095  Sum_probs=81.6

Q ss_pred             hhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 017823          192 ISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       192 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (365)
                      .....|.+.+++|.++.+.. ...+...++..++.++.|+++||+|||+.+..+.....++.+.....            
T Consensus        32 ~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------------   98 (406)
T PRK15402         32 IQPGMLAVVEDFNAGAEWVP-TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA------------   98 (406)
T ss_pred             HhcchHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------------
Confidence            33345667788999998888 88889999999999999999999999999998888877777766554            


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                       ++.+...+...+.+.+.+.. .+.......|.+|++.|.++.++....
T Consensus        99 -~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~  145 (406)
T PRK15402         99 -QSIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANV  145 (406)
T ss_pred             -ccHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence             12233333344434433322 334455668999999988877766543

>PRK10504 putative transporter; Provisional

Probab=98.63  E-value=6.5e-07  Score=89.49  Aligned_cols=125  Identities=17%  Similarity=0.151  Sum_probs=91.4

Q ss_pred             HHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHH
Q 017823          181 PFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIM  260 (365)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~  260 (365)
                      ..+...........+.|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+..... 
T Consensus        18 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-   95 (471)
T PRK10504         18 GFFMQSLDTTIVNTALPSMAQSLGESPLHMH-MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-   95 (471)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-
Confidence            3333344455667789999999999999888 77788888889999999999999999999998877777776655443 


Q ss_pred             hhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          261 ADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                                  ++.+..++...+.+.+.+.. .|.......|.+|+++|+++.++.+..
T Consensus        96 ------------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (471)
T PRK10504         96 ------------GTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLP  142 (471)
T ss_pred             ------------CCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence                        12333444455555554433 344456668999999999998877654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.63  E-value=5.4e-07  Score=86.53  Aligned_cols=119  Identities=14%  Similarity=0.036  Sum_probs=88.1

Q ss_pred             cccccchhhcHHH-HHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhc
Q 017823          186 VTRINVISFYAPV-LFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQI  264 (365)
Q Consensus       186 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~  264 (365)
                      +........+.|. +.++.|.++.+.+ +......++..++.++.|+++||+|||+.+..+.++..++.+......    
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----   88 (366)
T TIGR00886        14 FSVWFAFSPLAVQMIKDDLGLSTAQLG-NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----   88 (366)
T ss_pred             HHHHHHhHHhhhHHHHHHhCCCHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----
Confidence            3344556667785 6688999999999 899999999999999999999999999999999988888887776641    


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHH
Q 017823          265 GDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVA  319 (365)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  319 (365)
                              .+.+...+...+.+.+. ..+.+ ...+.+|.+|+++|+++.++...
T Consensus        89 --------~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~r~~~~~~~~~  133 (366)
T TIGR00886        89 --------QSYSVLLLLRLFIGIAG-GSFAS-CMPWISFFFPKKIQGTALGLAAG  133 (366)
T ss_pred             --------hhHHHHHHHHHHHHHhc-hhhHh-HHHHHHHhcCHhhhhHHHHHHHH
Confidence                    02333344444444442 23333 34566899999999999888653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.62  E-value=2.6e-07  Score=90.01  Aligned_cols=121  Identities=11%  Similarity=0.105  Sum_probs=104.3

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      +.|.+..+.|.+.+...++..+..++.+++.||+|+|+.+..+.....++.++.+++++++.+++..++.|++.+...+ 
T Consensus       234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~-  312 (382)
T PRK11128        234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL-  312 (382)
T ss_pred             HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence            3577788999999999999999999999999999999999999999888888888889999999999999999998888 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHH-HHHHHHHHHHHHHhhhhccc
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQ-VCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~  158 (365)
                                                ....++.+. +++++++..+... ....+|..+|+.+++.+.+.
T Consensus       313 --------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~  355 (382)
T PRK11128        313 --------------------------AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH  355 (382)
T ss_pred             --------------------------HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                      777777776 5666788888875 56778889999999988843

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.61  E-value=7.5e-07  Score=87.93  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=81.7

Q ss_pred             cHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhh
Q 017823          195 YAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGY  274 (365)
Q Consensus       195 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  274 (365)
                      -.|.+.++++.+..+.. ...+...++..++.++.|+++||+|||+.+..+..+..++.+.....             ++
T Consensus        38 ~l~~i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------------~~  103 (413)
T PRK15403         38 GIINVVRDFNADVSLAP-ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------------TS  103 (413)
T ss_pred             CHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------------CC
Confidence            34556678899999988 88899999999999999999999999999999888877777666553             22


Q ss_pred             HHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          275 AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+..++.-.+.+.+.+. ..+..+....|.+|+++|+++.++.+..
T Consensus       104 ~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (413)
T PRK15403        104 MTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSI  148 (413)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            33344444444444332 2344456678999999998887765555

>PRK09952 shikimate transporter; Provisional

Probab=98.59  E-value=3.5e-07  Score=90.93  Aligned_cols=131  Identities=10%  Similarity=-0.046  Sum_probs=92.8

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---h-hhHHHHHHHHHHhhcchhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA---A-FNIYMLIFGRVLLGVGIGF   85 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~---a-~~~~~~~~~r~l~G~~~g~   85 (365)
                      ++|++......+.....+...++.++.|+++||+|||+.+..+..+..++.+....   . ++.+.+++..++.+++.+.
T Consensus       280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  359 (438)
T PRK09952        280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM  359 (438)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence            34556666555666666777888899999999999999988877665554433322   1 2344555566777888887


Q ss_pred             hhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHH-HHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           86 ANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGF-QVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      ..+                           ....++.|.+|++.|+...++. +.+..+|..++|.+...+.+... .+|
T Consensus       360 ~~~---------------------------~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~  411 (438)
T PRK09952        360 VVC---------------------------VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSW  411 (438)
T ss_pred             HHH---------------------------HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence            777                           6778889999999998888884 44566888899988888765322 235


Q ss_pred             HHHH
Q 017823          165 RISL  168 (365)
Q Consensus       165 r~~f  168 (365)
                      +..+
T Consensus       412 ~~~~  415 (438)
T PRK09952        412 HSVA  415 (438)
T ss_pred             hHHH
Confidence            5443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.59  E-value=1.1e-06  Score=85.63  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=80.3

Q ss_pred             hcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchh
Q 017823          194 FYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIG  273 (365)
Q Consensus       194 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  273 (365)
                      ...|.+.++.|.++.+.+ .......+...++.++.|+++||+|||+.+..+.....++.+.....             +
T Consensus        29 p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------------~   94 (394)
T PRK11652         29 PAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------------H   94 (394)
T ss_pred             ccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------------c
Confidence            346777889999999998 88999999999999999999999999999998888777777665543             1


Q ss_pred             hHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          274 YAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+...+...+.+.+.+. ..+.......|.+|.++|+.+.++.+..
T Consensus        95 ~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMG  140 (394)
T ss_pred             cHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            223333444444443332 2334445567888888888876665443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.58  E-value=2.6e-07  Score=91.13  Aligned_cols=128  Identities=11%  Similarity=-0.043  Sum_probs=93.7

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-----h------hHHHHHHHHHH
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA-----F------NIYMLIFGRVL   78 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a-----~------~~~~~~~~r~l   78 (365)
                      +.|++..+.++......++..++.++.|++.||+|||+.+..+..+..++.++.++.     +      +...+....+.
T Consensus       313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (481)
T TIGR00879       313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF  392 (481)
T ss_pred             HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH
Confidence            456778888888889999999999999999999999999998888877777666521     1      22222222222


Q ss_pred             hhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc
Q 017823           79 LGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        79 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  158 (365)
                      .+.......+                           ....++.|..|+++|+++.+..+....+|..+++.+...+.+.
T Consensus       393 ~~~~~~~~~~---------------------------~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       393 IAFFAMGWGP---------------------------VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             HHHHHccccC---------------------------eehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222222234                           5556679999999999999999999999999999988777632


Q ss_pred             cCCcchHHH
Q 017823          159 KVGWGWRIS  167 (365)
Q Consensus       159 ~~~~gwr~~  167 (365)
                         .+|+..
T Consensus       446 ---~~~~~~  451 (481)
T TIGR00879       446 ---IGVGGV  451 (481)
T ss_pred             ---cCccce
Confidence               345544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.57  E-value=2.9e-07  Score=89.94  Aligned_cols=127  Identities=12%  Similarity=0.097  Sum_probs=104.4

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhh
Q 017823           12 KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSV   91 (365)
Q Consensus        12 ~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~   91 (365)
                      +.+..+.|...+...+...++.+..|++.||+|||+.+.++..+.+++..+...++|.+.+++.+++.|++......   
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~---  326 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLV---  326 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH---
Confidence            44566788899999999999999999999999999999999998888888878888999999999999988766555   


Q ss_pred             hhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH-HHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           92 WLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG-FQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                              ....+..+..|++.++...+. .+....+|..+++.+++.+.+.   .||+..|
T Consensus       327 ------------------------~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~---~G~~~~f  377 (396)
T TIGR00882       327 ------------------------GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS---IGFQGAY  377 (396)
T ss_pred             ------------------------HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh---cccHHHH
Confidence                                    455566777787778776665 6788999999999999998843   4566655

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.57  E-value=1.6e-06  Score=87.25  Aligned_cols=114  Identities=12%  Similarity=-0.012  Sum_probs=82.3

Q ss_pred             cchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCC
Q 017823          190 NVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG  269 (365)
Q Consensus       190 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  269 (365)
                      .....+.|.+.+++|.+.++.+ ...+...++..++.++.|+++||+|||+.+..+.+...++.+.....          
T Consensus        53 ~~~~~~~~~l~~~~gls~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----------  121 (476)
T PLN00028         53 FAAAPLLPIIRDNLNLTKSDIG-NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV----------  121 (476)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh----------
Confidence            3445567788899999999888 77888888899999999999999999999988887777776666554          


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVA  319 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  319 (365)
                         .+.+...+..++.+++.+. ..+. ..+.+|.+|+++|+++.|+.+.
T Consensus       122 ---~s~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~  166 (476)
T PLN00028        122 ---SSATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAG  166 (476)
T ss_pred             ---cCHHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHH
Confidence               1122333333444444332 2333 3345899999999999888753

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.57  E-value=1e-06  Score=86.51  Aligned_cols=118  Identities=10%  Similarity=0.034  Sum_probs=86.9

Q ss_pred             cccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCC
Q 017823          188 RINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGD  266 (365)
Q Consensus       188 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~  266 (365)
                      +......+.|.++ ++.|.++.+.+ .......+...+.+++.|+++||+|||+.+..+.....++.+.....       
T Consensus        25 ~~~~~~~~~~~~~~~~~g~s~~~~g-l~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-------   96 (400)
T PRK11646         25 GFFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-------   96 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-------
Confidence            4444455566555 67899999999 88888888999999999999999999999999998888888777653       


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          267 HGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                            +..+...+...+.+.+.+. ..|....+..|.+|+++|+++.|+....
T Consensus        97 ------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~  143 (400)
T PRK11646         97 ------HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQ  143 (400)
T ss_pred             ------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                  1233344444444444432 2343345568999999999999997666

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.57  E-value=1.7e-06  Score=87.61  Aligned_cols=106  Identities=18%  Similarity=0.050  Sum_probs=76.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHH
Q 017823          206 SESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVY  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (365)
                      +..+.. .......++.+++.++.++++||+|||+.+..+.++..++.++......       ..+.......++...+.
T Consensus        54 ~~~~~~-~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~r~l~  125 (502)
T TIGR00887        54 PSSVSA-AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG-------SSPKSVMATLCFWRFWL  125 (502)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC-------cccchHHHHHHHHHHHH
Confidence            344455 7888889999999999999999999999999988888887776655310       00111133455556666


Q ss_pred             HHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          286 KAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       286 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +++.+.... ....+.+|.+|++.|+++.++.+..
T Consensus       126 G~~~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~  159 (502)
T TIGR00887       126 GVGIGGDYP-LSAIITSEFATKKWRGAMMAAVFAM  159 (502)
T ss_pred             HHHHhhhhH-HHHHHHHHhcChhhHHHHHHHHHHH
Confidence            666654444 4467779999999999999887666

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.56  E-value=1.6e-07  Score=93.91  Aligned_cols=130  Identities=11%  Similarity=-0.017  Sum_probs=104.8

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA--FGRKASILV--RSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGF   85 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr--~Grk~~l~~--~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~   85 (365)
                      +.+++..+.+.+.++..++..+++++.|.+.||  +++|+...+  +..+.+++.++...+++++.+++.+++.|++.+.
T Consensus       270 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~  349 (455)
T TIGR00892       270 DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGS  349 (455)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhch
Confidence            357889999999999999999999999999997  334433333  3344445555666778899999999999999998


Q ss_pred             hhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchH
Q 017823           86 ANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWR  165 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr  165 (365)
                      ..+                           ....++.|..|++++++..++.+....+|..+||.+++.+.+..+  +|+
T Consensus       350 ~~~---------------------------~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~  400 (455)
T TIGR00892       350 VGA---------------------------LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYK  400 (455)
T ss_pred             HHH---------------------------HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--Ccc
Confidence            888                           777888999999999999999999999999999999998874332  366


Q ss_pred             HHH
Q 017823          166 ISL  168 (365)
Q Consensus       166 ~~f  168 (365)
                      ..|
T Consensus       401 ~~f  403 (455)
T TIGR00892       401 YIF  403 (455)
T ss_pred             hHH
Confidence            554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.56  E-value=2.3e-07  Score=89.10  Aligned_cols=105  Identities=13%  Similarity=0.093  Sum_probs=88.9

Q ss_pred             ccCCchHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHH
Q 017823           11 SKFDSQLLTTFTSSLY-IAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA-----------FNIYMLIFGRVL   78 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~-i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a-----------~~~~~~~~~r~l   78 (365)
                      .|+|+++.+.+.++.. ++..++.+++|++.||+|||+.+..+.++..++..+..+.           ++.+.+..+.++
T Consensus       239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (356)
T TIGR00901       239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITL  318 (356)
T ss_pred             cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence            5778999998888765 6788999999999999999999988888877776655443           356778888999


Q ss_pred             hhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHH
Q 017823           79 LGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVA  142 (365)
Q Consensus        79 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~  142 (365)
                      .+++.+...+                           ...+++.|.+|+++||+..++.+...+
T Consensus       319 ~~~~~~~~~~---------------------------~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       319 EAVTGGLGTV---------------------------AFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhHHHHH---------------------------HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            9999999999                           899999999999999999999876554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.54  E-value=4.1e-07  Score=87.81  Aligned_cols=137  Identities=16%  Similarity=0.170  Sum_probs=106.1

Q ss_pred             HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHH
Q 017823          169 KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQ  248 (365)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~  248 (365)
                      ++|.+.+....+........-..+..-.|.+.++.++|.++.+ .+.+...+..-++..+.|.++||.+.|+.+..++++
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG-~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLG-ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence            3344444444443333222333445567888888899999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          249 MLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       249 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .++..+++++.             ++.....++..+-+.+-+.+|+|..-.+ +.-+|+++||+..++-++.
T Consensus       104 sai~nil~Gfs-------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~s  161 (448)
T COG2271         104 SAIVNILFGFS-------------PSLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTS  161 (448)
T ss_pred             HHHHHHHHhhh-------------hHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhh
Confidence            99999999986             3455666666666777788888886555 7999999999887777766

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.53  E-value=3.4e-07  Score=94.47  Aligned_cols=221  Identities=15%  Similarity=0.097  Sum_probs=168.2

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--------------------
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA--------------------   66 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a--------------------   66 (365)
                      +++.++++.++.|++.+.+-++..+...+..|.+-|..|-+.+-.+.+++++++++.++-                    
T Consensus       123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~  202 (735)
T KOG3626|consen  123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN  202 (735)
T ss_pred             hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence            456778889999999999999999999999999999999999999999999999998762                    


Q ss_pred             h--------------------------------hHHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcc
Q 017823           67 F--------------------------------NIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWL  114 (365)
Q Consensus        67 ~--------------------------------~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (365)
                      +                                -+..++++.++.|+|....++                          
T Consensus       203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t--------------------------  256 (735)
T KOG3626|consen  203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT--------------------------  256 (735)
T ss_pred             CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc--------------------------
Confidence            0                                023677799999999999999                          


Q ss_pred             cccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC------------c----chHHHH----------
Q 017823          115 QSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG------------W----GWRISL----------  168 (365)
Q Consensus       115 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~------------~----gwr~~f----------  168 (365)
                       ...+|+-|...+++-....++......+|.++|.+++.+..+.-..            .    .|..-|          
T Consensus       257 -lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  257 -LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             -CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999999999988888876542111            1    233333          


Q ss_pred             ----------------------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcH
Q 017823          169 ----------------------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYA  196 (365)
Q Consensus       169 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (365)
                                                                          ...+++.+...+........+.....|.
T Consensus       336 a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl  415 (735)
T KOG3626|consen  336 AVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL  415 (735)
T ss_pred             HHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence                                                                1122345555555555566788888999


Q ss_pred             HHHH-HHcCCCcchhhHHHH-HHHHHHHHHHHHHHHHHHhhhCc--chHHHHhHHHHHHHHHH
Q 017823          197 PVLF-RTIKLSESTSLLMSA-IVTGSLGTISTSLSMILADRLGR--KVLFLVGGIQMLVSRVM  255 (365)
Q Consensus       197 ~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~gr--r~~l~~~~~~~~i~~~~  255 (365)
                      |.|+ ++++.+.+.+. .+. .+.--+..+|.+++|++..|+.-  |.......+...++++.
T Consensus       416 PKyLE~Qfg~sas~An-~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  416 PKYLETQFGISASLAN-ILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             HHHHHHHcCCCHHHHH-HHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence            9999 56899999888 555 44444566888899999999854  34444444444333333

>TIGR00898 2A0119 cation transport protein

Probab=98.52  E-value=3.5e-07  Score=92.25  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             cHHHHHHHcCCC---cchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 017823          195 YAPVLFRTIKLS---ESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       195 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (365)
                      +.|.+.++.+.+   +.+.+ ...+...++..++.++.|+++||+|||+.+..+.++..++.+...+.            
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~-~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------  177 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVD-LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------  177 (505)
T ss_pred             ccccEEEEecceechHHHHH-HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------
Confidence            445556777887   67777 88899999999999999999999999999999888888777766654            


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                       ++.+...+...+.+++.+. ..+....+..|.+|+++|+.+.++....
T Consensus       178 -~~~~~~~~~r~l~G~~~~~-~~~~~~~~~~e~~~~~~r~~~~~~~~~~  224 (505)
T TIGR00898       178 -PNYTVFLVFRLLVGMGIGG-IWVQAVVLNTEFLPKKQRAIVGTLIQVF  224 (505)
T ss_pred             -ccHHHHHHHHHHHHhhccc-hHHHHHHHhheecChhhhHHHHHHHHHH
Confidence             2234444555555555443 3445567779999999999888876444

>PRK11043 putative transporter; Provisional

Probab=98.52  E-value=1.8e-06  Score=84.39  Aligned_cols=108  Identities=18%  Similarity=0.098  Sum_probs=75.9

Q ss_pred             HHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhH
Q 017823          196 APVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYA  275 (365)
Q Consensus       196 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  275 (365)
                      .|.+.++.|.++++.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.+.....             ++.
T Consensus        29 ~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------~~~   94 (401)
T PRK11043         29 FKAIQADLQTSASAVS-ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------------ESA   94 (401)
T ss_pred             HHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------cCH
Confidence            3445678899999998 88999999999999999999999999999998887777766665543             122


Q ss_pred             HHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHH
Q 017823          276 YLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITV  318 (365)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  318 (365)
                      +...+...+.+.+.+.. .+.......|.+|++++++..+..+
T Consensus        95 ~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  136 (401)
T PRK11043         95 AQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIM  136 (401)
T ss_pred             HHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            33333334433433222 2233345578999988877766554

>TIGR00896 CynX cyanate transporter

Probab=98.51  E-value=4.8e-07  Score=86.97  Aligned_cols=122  Identities=13%  Similarity=0.006  Sum_probs=94.7

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      .|.|..+.+.+.+...++..+++++.|++.||+ +||+.+..+..+.+++.....+.++..... .-++.|++.|...+ 
T Consensus       227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~-  304 (355)
T TIGR00896       227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFP-  304 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhH-
Confidence            577899999999999999999999999999999 567777777777777777666665433322 45678999988888 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccC-CCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccC
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMA-PPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKV  160 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  160 (365)
                                                .....+.+.. ++++++...+..+....+|..++|.+.+.+.+..+
T Consensus       305 --------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       305 --------------------------LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             --------------------------HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                      5555554444 45667888898888888889999999888876544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.48  E-value=7e-07  Score=81.32  Aligned_cols=125  Identities=26%  Similarity=0.352  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhhcchhhhhhhhhhh
Q 017823           16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFN--IYMLIFGRVLLGVGIGFANQVSVWL   93 (365)
Q Consensus        16 ~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~--~~~~~~~r~l~G~~~g~~~~~~~~~   93 (365)
                      ...++..+.+.++..+++++.|.+.||+|||+.+..+.....++.+..++..+  .+.+++.|+..|++.+...+     
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----  113 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLP-----  113 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHH-----
Confidence            47899999999999999999999999999998888888766666777777766  89999999999999998888     


Q ss_pred             hhhcccccchhhhhHHHhhcccccceeecccCCC-CCcchhhhHHHH-HHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           94 FYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPP-KNRGAFNIGFQV-CVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                            ....++.|..|+ ++|+...+.... ...+|..+++.++..+... ...+||..+
T Consensus       114 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  167 (338)
T COG0477         114 ----------------------VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAF  167 (338)
T ss_pred             ----------------------HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHH
Confidence                                  888899999987 678888888888 5888888888777766644 445788744

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.48  E-value=9.9e-07  Score=88.62  Aligned_cols=125  Identities=15%  Similarity=0.138  Sum_probs=112.9

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHH
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRK--ASILVRSTAFLAGSALRGA--------AFNIYMLIFGRVL   78 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk--~~l~~~~~~~~~~~~~~~~--------a~~~~~~~~~r~l   78 (365)
                      +++|++..+...+.-+..+...+|++++|++.||+|.|  +++..+..++.+..+...+        .++.+.+.+.-++
T Consensus       310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~  389 (477)
T PF11700_consen  310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL  389 (477)
T ss_pred             HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence            46788899999999999999999999999999999999  8998888888666666555        5788899999999


Q ss_pred             hhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc
Q 017823           79 LGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        79 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  158 (365)
                      .|+..|..++                           ...++.+|..|+++.+...|++....-....+||++.+.+.+.
T Consensus       390 ~G~~~G~~qs---------------------------~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~  442 (477)
T PF11700_consen  390 IGLFMGGIQS---------------------------ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA  442 (477)
T ss_pred             HHHHhhhHHH---------------------------HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999                           9999999999999999999999999999999999999888865


Q ss_pred             cC
Q 017823          159 KV  160 (365)
Q Consensus       159 ~~  160 (365)
                      .+
T Consensus       443 tg  444 (477)
T PF11700_consen  443 TG  444 (477)
T ss_pred             hC
Confidence            54

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.46  E-value=2.4e-06  Score=83.16  Aligned_cols=112  Identities=13%  Similarity=-0.087  Sum_probs=76.9

Q ss_pred             hhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCch
Q 017823          193 SFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI  272 (365)
Q Consensus       193 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  272 (365)
                      ....|.+.+++|.++.+.+ ...+...++..++.+..|+++||+|||+.+.........+.. ....           . 
T Consensus        11 ~~~lp~i~~~~~~s~~~~g-~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~-----------~-   76 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELG-LLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD-----------P-   76 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH-----------h-
Confidence            3457788899999999998 888999999999999999999999999876654433333221 1111           0 


Q ss_pred             hhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          273 GYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+....++.-.+.+.+.+. .. ......+|.+|+++|+++.++....
T Consensus        77 ~~~~~l~~~R~l~G~g~~~-~~-~~~~~~~~~~~~~~r~~a~~~~~~~  122 (368)
T TIGR00903        77 FNYEWLLACQLLAALGQPF-LL-NAFAPAASQIREERRDLVISLLSFA  122 (368)
T ss_pred             ccHHHHHHHHHHHHhHhHH-HH-HHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            1233444445555555442 22 2233448999999999999988766

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.44  E-value=1.1e-06  Score=87.46  Aligned_cols=123  Identities=15%  Similarity=0.126  Sum_probs=90.9

Q ss_pred             cCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Q 017823            7 ISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG-----RKASILVRSTAFLAGSALRGAA----FNIYMLIFGRV   77 (365)
Q Consensus         7 ~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~G-----rk~~l~~~~~~~~~~~~~~~~a----~~~~~~~~~r~   77 (365)
                      .++++|+|+++.....+...+...+ -++.|.++|.+-     ||+-++++..+..++....+..    .+.....+.-+
T Consensus        16 l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~   94 (433)
T PF03092_consen   16 LKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLF   94 (433)
T ss_pred             HHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHH
Confidence            3456777799999988888887765 467899999863     5555666776665555555443    34566666777


Q ss_pred             HhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCC--CCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 017823           78 LLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP--PKNRGAFNIGFQVCVATAVLSANLLNYGT  155 (365)
Q Consensus        78 l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  155 (365)
                      +..+|......                           .+.+++.|...  |+.||...+.......+|.+++..+++.+
T Consensus        95 la~~g~a~~DV---------------------------~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen   95 LASFGYAFADV---------------------------AADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             HHHHHHHHHHH---------------------------hhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            78888888888                           88888888773  33477888888888999999998888776


Q ss_pred             cc
Q 017823          156 QK  157 (365)
Q Consensus       156 ~~  157 (365)
                      .+
T Consensus       148 ~~  149 (433)
T PF03092_consen  148 LD  149 (433)
T ss_pred             hh
Confidence            64

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.44  E-value=6.4e-07  Score=90.95  Aligned_cols=122  Identities=14%  Similarity=0.120  Sum_probs=111.9

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|.++...|++.+...+|..+|++..+++.+|+++++.+..+.++++++.+..+++++.+...++-++.|++......
T Consensus       247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~  326 (524)
T PF05977_consen  247 DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANS  326 (524)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            45667799999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                                                 ...+.+.+..|++.|||+++++++....+..+|..+.+.+.+
T Consensus       327 ---------------------------~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  327 ---------------------------SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             ---------------------------HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       777888899999999999999999999999999998888773

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=98.43  E-value=1.1e-06  Score=87.30  Aligned_cols=122  Identities=12%  Similarity=0.019  Sum_probs=85.6

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HH---HhhhHHHHHHHHHHhhcchhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSAL-RG---AAFNIYMLIFGRVLLGVGIGF   85 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~-~~---~a~~~~~~~~~r~l~G~~~g~   85 (365)
                      ..|++..+.++....+.++..++.++.|+++||+|||+.+..+..+..+.... ..   ..+++.......++.|++.+.
T Consensus       268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  347 (434)
T PRK15075        268 VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGS  347 (434)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            35777888888888899999999999999999999999987765443322211 11   123344444455556666666


Q ss_pred             hhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHH-HHHHHHHHHHHHHhhhhccc
Q 017823           86 ANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQ-VCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~  158 (365)
                      ..+                           ....+..|..|+++|+...++.. .+..++..++|.+.+.+.+.
T Consensus       348 ~~~---------------------------~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~  394 (434)
T PRK15075        348 YNG---------------------------AMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV  394 (434)
T ss_pred             HHh---------------------------hHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            655                           55567899999999999998854 34445566788887777643

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.42  E-value=8e-06  Score=81.01  Aligned_cols=131  Identities=13%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcch-hhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHH
Q 017823          172 LQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSEST-SLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQML  250 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~  250 (365)
                      +...+.+...++..+=  ....+-.|.+.++.|+++++ .+ .+......+..+..+++|+++||+|-|+.+..+.+...
T Consensus        27 ~~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G-~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Ws  103 (511)
T TIGR00806        27 VLVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTN-EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFV  103 (511)
T ss_pred             HHHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            3444455555555442  33444577777899999999 77 99999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          251 VSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       251 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +...+.++.             .......+.-++++++-+..+  ....++.+.+|+++|+++.|+.++.
T Consensus       104 l~t~L~~fa-------------~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg  158 (511)
T TIGR00806       104 CVWLLLLLG-------------TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAA  158 (511)
T ss_pred             HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            888888875             335566667777777777666  3356668999999999999999888

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.41  E-value=1.5e-06  Score=86.77  Aligned_cols=106  Identities=13%  Similarity=-0.086  Sum_probs=78.8

Q ss_pred             HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHH
Q 017823          202 TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVL  281 (365)
Q Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (365)
                      +.+++..+.+ ...+...++..++.++.|+++||+|||+.+..+.++..+..++.....           ....+..++.
T Consensus        70 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~  137 (465)
T TIGR00894        70 NFKWSGALQG-LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFC  137 (465)
T ss_pred             CCCCCHHHhh-HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHH
Confidence            4677888888 889999999999999999999999999999988887777766654331           0112334444


Q ss_pred             HHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          282 ICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      -.+.+.+.+.. .|....+.+|.+|+++|+++.++....
T Consensus       138 r~~~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~  175 (465)
T TIGR00894       138 RVIQGLAQGSV-SPATHKIIVKWAPPKERSRLLGMSTSG  175 (465)
T ss_pred             HHHHHHhcccc-hhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            55555555444 344456679999999999999988775

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.40  E-value=3.5e-06  Score=82.48  Aligned_cols=115  Identities=12%  Similarity=-0.013  Sum_probs=89.3

Q ss_pred             cchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCC
Q 017823          190 NVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG  269 (365)
Q Consensus       190 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  269 (365)
                      .......|.+.+++|.+.++.+ ...+...++..++.++.+++.||+|||+++..+..+..++.+..++.          
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------   94 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAA-LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------   94 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----------
Confidence            4455678888899999999999 89999999999999999999999999999999999999999988875          


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                         ++.+..++.-.+.+.+.+...... ..+..|.+| ++|+++.+...+.
T Consensus        95 ---~~~~~ll~~r~l~Gig~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~  140 (393)
T PRK09705         95 ---PQSALLLSSALLGGVGIGIIQAVM-PSVIKRRFQ-QRTPLVMGLWSAA  140 (393)
T ss_pred             ---cchHHHHHHHHHHHhHHHHHhhhh-hHHHHHHcc-ccchhHHHHHHHH
Confidence               223344455555556655443333 445578887 6789988876543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.40  E-value=1.8e-06  Score=85.15  Aligned_cols=117  Identities=20%  Similarity=0.170  Sum_probs=97.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhcchhhhhhhhhh
Q 017823           14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA-FNIYMLIFGRVLLGVGIGFANQVSVW   92 (365)
Q Consensus        14 ~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a-~~~~~~~~~r~l~G~~~g~~~~~~~~   92 (365)
                      ++.+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++.+...+. ++.+.+.+..++.|++.+...+    
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----  330 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG----  330 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH----
Confidence            35677788888899999999999999999999999999988888887776665 4567777888889999988888    


Q ss_pred             hhhhcccccchhhhhHHHhhcccccceeecccCC-------CCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           93 LFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-------PKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                                             ...++++|..|       ++++|...++.+....+|..+++.+.+.+.+
T Consensus       331 -----------------------~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       331 -----------------------LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             -----------------------HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   66667777654       4567999999999999999999998887763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.40  E-value=1.9e-06  Score=83.99  Aligned_cols=129  Identities=11%  Similarity=-0.033  Sum_probs=92.7

Q ss_pred             cccCCchHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhhcc
Q 017823           10 YSKFDSQLLTTFTSSLY-IAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA------AFNIYMLIFGRVLLGVG   82 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~-i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~------a~~~~~~~~~r~l~G~~   82 (365)
                      |.|+++++.|++..... ....++.++.|++.||+|+|+.+..+..+..+.......      .++.........+.++.
T Consensus       237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (390)
T TIGR02718       237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI  316 (390)
T ss_pred             hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence            35788999999988876 466778899999999999999988777655333332221      12333444455555666


Q ss_pred             hhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCC-CCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC
Q 017823           83 IGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPP-KNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG  161 (365)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  161 (365)
                      .+...+                           .......+..++ +++++..+..+...++|..+++.+++.+.+.   
T Consensus       317 ~g~~~~---------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---  366 (390)
T TIGR02718       317 TGITSV---------------------------AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---  366 (390)
T ss_pred             HHHHHH---------------------------HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            676666                           555566666665 7899999999999999999999999988743   


Q ss_pred             cchHHHH
Q 017823          162 WGWRISL  168 (365)
Q Consensus       162 ~gwr~~f  168 (365)
                      .|++..|
T Consensus       367 ~G~~~~f  373 (390)
T TIGR02718       367 FGYAGGF  373 (390)
T ss_pred             HccHHHH
Confidence            3454443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.40  E-value=1.6e-06  Score=87.26  Aligned_cols=120  Identities=15%  Similarity=0.147  Sum_probs=85.4

Q ss_pred             cccccchhhcHHHHHHH---cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-hCcchHHHHhHHHHHHHHHHHHHHHh
Q 017823          186 VTRINVISFYAPVLFRT---IKLSESTSLLMSAIVTGSLGTISTSLSMILADR-LGRKVLFLVGGIQMLVSRVMIGSIMA  261 (365)
Q Consensus       186 ~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~i~~~~~~~~~~  261 (365)
                      -.+++....+.|.|+++   .|++..+++ .......+...++.+++|+++|| +|||+.+..+..+..++.+.+...  
T Consensus        23 ~~~~~~~~~~L~~yl~~~~~lg~s~~~ag-~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--   99 (475)
T TIGR00924        23 RFSYYGMQGILAVYLVQQAGLGFSQEQAF-IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--   99 (475)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--
Confidence            34566667778888854   799999999 89999999999999999999999 899999999999988888777653  


Q ss_pred             hhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhh---hhHHHHHHHHH
Q 017823          262 DQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEI---ISAGQIITVAA  320 (365)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~  320 (365)
                                 +..+...+...+.+.+.+. ..|....+.+|.+|+++   |+++.++.+..
T Consensus       100 -----------~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~  149 (475)
T TIGR00924       100 -----------IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMS  149 (475)
T ss_pred             -----------ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHH
Confidence                       1122233333344444333 33344555678887654   77776665544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.38  E-value=3.7e-06  Score=71.50  Aligned_cols=125  Identities=22%  Similarity=0.171  Sum_probs=102.5

Q ss_pred             ccCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhh
Q 017823            6 NISNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGF   85 (365)
Q Consensus         6 ~~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~   85 (365)
                      +.++.-++++..--.-.++.+....+.+++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-++.|++.+.
T Consensus        27 ~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~  105 (156)
T PF05978_consen   27 HERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAAL  105 (156)
T ss_pred             hhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHH
Confidence            3333344555555555667778889999999999999999999999999988654443 557889999999999999999


Q ss_pred             hhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc
Q 017823           86 ANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  158 (365)
                      .+.                           ....++.+..++++|++..+++......+.++|+++.....+.
T Consensus       106 lW~---------------------------aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~  151 (156)
T PF05978_consen  106 LWT---------------------------AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG  151 (156)
T ss_pred             hhH---------------------------hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999                           8888899999999999999999988888999998887776543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.37  E-value=1.5e-05  Score=79.64  Aligned_cols=106  Identities=8%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHH
Q 017823          202 TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVL  281 (365)
Q Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (365)
                      ++|+++++.+ ...++..+...+.++..|++.||+|.|+.+..+..+..+..+..++...       +.. ++.+..++.
T Consensus        64 ~~~ls~~q~g-~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~-------~~~-~s~~~lli~  134 (462)
T PRK15034         64 GFNFTTDQLF-LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ-------NPN-TPFGIFIVI  134 (462)
T ss_pred             hcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc-------ccC-CCHHHHHHH
Confidence            6899999998 8888899999999999999999999999999988888877776665310       001 223344444


Q ss_pred             HHHHHHhhccccccccccccccCCChhhhhHHHHHHH
Q 017823          282 ICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITV  318 (365)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  318 (365)
                      ..+.+++ +..+.+ ....+++.+|+++||++.|+..
T Consensus       135 r~l~Gig-g~~f~~-~~~~vs~wfp~~~rG~A~Gi~~  169 (462)
T PRK15034        135 ALLCGFA-GANFAS-SMGNISFFFPKAKQGSALGING  169 (462)
T ss_pred             HHHHHHH-HHhHHH-HHHHHHHHCCHhHhHHHHHHHH
Confidence            4444444 333433 3455689999999999999984

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.35  E-value=3.1e-06  Score=82.96  Aligned_cols=121  Identities=16%  Similarity=0.026  Sum_probs=81.2

Q ss_pred             cccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh-----Ccch-HHHHhHHHHHHHHHHHHHH
Q 017823          186 VTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRL-----GRKV-LFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~l~~~~~~~~i~~~~~~~~  259 (365)
                      .........-.|.++++.|++.++.+ ........  .+..++.|+++||+     |||| .+..+..+.+++...+.+.
T Consensus        12 ~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~   88 (402)
T PRK11902         12 GLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC   88 (402)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence            33455566678999999999999998 55444443  58889999999999     7776 5777777777676666553


Q ss_pred             HhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          260 MADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .          +....+......++.... .....+....+..|.+|+|+|+++.++....
T Consensus        89 ~----------~~~~~~~l~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g  138 (402)
T PRK11902         89 P----------PHAALWPLAGLAVLVAFL-SASQDIVFDAYSTDVLHPEERGAGAAVKVLG  138 (402)
T ss_pred             C----------ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChhhhhHHHHHHHHH
Confidence            1          112233333333333333 3334555567779999999999887776554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.34  E-value=7.5e-05  Score=72.98  Aligned_cols=267  Identities=10%  Similarity=0.028  Sum_probs=175.9

Q ss_pred             cccCCchHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823           10 YSKFDSQLLT-TFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus        10 ~~~~~~~~~~-~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +.|++..|.. -+.-...-.+....++...++|..+.|++++++.+...+...+..+.++...+-+..+..|++.+....
T Consensus        34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~eva  113 (412)
T PF01770_consen   34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVA  113 (412)
T ss_pred             ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence            3566666654 333344556677888999999999999999999999999999999999999999999999999887554


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                                  ..+|+-...|+++-.++.+......-+|..++.++|-.+.+... ...+...
T Consensus       114 ----------------------------y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-~sy~~L~  164 (412)
T PF01770_consen  114 ----------------------------YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-VSYFQLN  164 (412)
T ss_pred             ----------------------------HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHH
Confidence                                        66777777788888888888888888887777777766654221 1222221


Q ss_pred             ------------------------------------------------------------------------------Hh
Q 017823          169 ------------------------------------------------------------------------------KY  170 (365)
Q Consensus       169 ------------------------------------------------------------------------------~~  170 (365)
                                                                                                    -+
T Consensus       165 ~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y  244 (412)
T PF01770_consen  165 YISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCY  244 (412)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHh
Confidence                                                                                          22


Q ss_pred             HHHHHHHHHHHHHHhcccccchhhcHHHHHHHc---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHh--
Q 017823          171 RLQFVMAILIPFFQHVTRINVISFYAPVLFRTI---KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVG--  245 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~--  245 (365)
                      +++.++...++.....+++.....|...+.++.   +-+..-.+ ..-....+.+.++.+..|++..++.+..-+..+  
T Consensus       245 ~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG-~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~  323 (412)
T PF01770_consen  245 SNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNG-AVEAASTLLGAIAALLAGYVKVNWDRWGELALGVF  323 (412)
T ss_pred             cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccch-HHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHH
Confidence            334455555666666677777778888887776   22222334 556666677777888888885555554333322  


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          246 GIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       246 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..+.+..++.+...             ++.|...+..+++...+.+.......-+ +.....|.-|...|+...+
T Consensus       324 S~l~a~~L~lm~~t-------------~~Iwv~Y~~yIif~~~y~fliTiA~~qI-A~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  324 SLLQAGLLFLMSFT-------------GNIWVCYAGYIIFRSLYMFLITIASFQI-AKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccceeeeeeeHHHH
Confidence            22333333333332             4566777777777777765544443333 4444555556666655443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.34  E-value=3.5e-06  Score=85.13  Aligned_cols=129  Identities=9%  Similarity=0.040  Sum_probs=94.8

Q ss_pred             cccCCchHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHHHHhhcchh
Q 017823           10 YSKFDSQLLTTFTS-SLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALR---GAA-FNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus        10 ~~~~~~~~~~~~~s-~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~a-~~~~~~~~~r~l~G~~~g   84 (365)
                      +.|+|.++.++... ...++..++.++.|++.||+|||+.+..+..+..+..+..   +.. ++.+.+...-++..+..|
T Consensus       252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g  331 (491)
T PRK11010        252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGG  331 (491)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            46888999999975 5668999999999999999999998776665555444322   222 345555555566555555


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      ...+                           ...++..+..|++.++...++.+...++|..+++.+.+.+.+   ..||
T Consensus       332 ~~~~---------------------------~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~---~~G~  381 (491)
T PRK11010        332 MGTA---------------------------AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE---AHGW  381 (491)
T ss_pred             HHHH---------------------------HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCh
Confidence            5555                           556667888888899999999999999998888888877774   3467


Q ss_pred             HHHH
Q 017823          165 RISL  168 (365)
Q Consensus       165 r~~f  168 (365)
                      +..|
T Consensus       382 ~~~f  385 (491)
T PRK11010        382 PTFY  385 (491)
T ss_pred             HHHH
Confidence            6554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.34  E-value=1.3e-06  Score=84.46  Aligned_cols=125  Identities=16%  Similarity=0.149  Sum_probs=115.6

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|++..+...+.....+..+++++++|++.||+|.|+++..+.++..+.++..-+......+.++-.+.|.+.|..+.
T Consensus       281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA  360 (438)
T COG2270         281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA  360 (438)
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence            35677799999999999999999999999999999999999999999999999888888888888888999999999999


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccC
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKV  160 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  160 (365)
                                                 .+-+|..+..|+++-++..+++....-.+..+||.+...+.+..+
T Consensus       361 ---------------------------~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         361 ---------------------------SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             ---------------------------HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence                                       999999999999999999999999999999999999888876654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.33  E-value=1.7e-06  Score=95.82  Aligned_cols=120  Identities=14%  Similarity=0.040  Sum_probs=106.8

Q ss_pred             cccCCch-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823           10 YSKFDSQ-LLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus        10 ~~~~~~~-~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      .++.+.. +.+++.+...++..+++++.|++.||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+...+
T Consensus       262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  341 (1146)
T PRK08633        262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV  341 (1146)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence            4567788 899999999999999999999999999999999888888888888888888888888999999999998888


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                                 ...+++.+..|+++||+++++.+....+|.++++.++..+.
T Consensus       342 ---------------------------~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        342 ---------------------------PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             ---------------------------HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       77788899999999999999999999999888887776654

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.33  E-value=6.1e-06  Score=75.32  Aligned_cols=266  Identities=14%  Similarity=0.121  Sum_probs=150.0

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      ..+++-..++|.+....+-...+...+.|.++|+-|||+.-+.-++..++++ ++-.++.+-.++++|++-|+..+..+.
T Consensus        65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFS  143 (454)
T KOG4332|consen   65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFS  143 (454)
T ss_pred             hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHH
Confidence            3456667778777777666777888899999999999998665555454443 334567888999999999999988877


Q ss_pred             h-hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHH--------HHHHHHHHHHhhhhcccc
Q 017823           89 V-SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCV--------ATAVLSANLLNYGTQKIK  159 (365)
Q Consensus        89 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~--------~~g~~i~~~~~~~~~~~~  159 (365)
                      . +-|+                           +.|..  ++|+.-.-+....+        .+=.+++++.+..+.+..
T Consensus       144 aFEsWl---------------------------iaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~  194 (454)
T KOG4332|consen  144 AFESWL---------------------------IAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF  194 (454)
T ss_pred             HHHHHH---------------------------HHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence            2 3333                           45653  34443333322221        122223333333332211


Q ss_pred             CCcchHHHH------------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHH
Q 017823          160 VGWGWRISL------------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAP  197 (365)
Q Consensus       160 ~~~gwr~~f------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (365)
                      . .|-..+|                                          ...++..+.-.+...+....+.....|.|
T Consensus       195 s-lGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTP  273 (454)
T KOG4332|consen  195 S-LGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTP  273 (454)
T ss_pred             c-cCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecc
Confidence            1 1111111                                          11122333333344443444444555666


Q ss_pred             HHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcc--hHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhh
Q 017823          198 VLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRK--VLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGY  274 (365)
Q Consensus       198 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  274 (365)
                      .+- ++.+   .-.+ .+..-+....++|+.+..++..|-..|  ..+.+.+....+.+.+......    ..++  ...
T Consensus       274 aLspn~e~---iPhG-fiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~----vsP~--kes  343 (454)
T KOG4332|consen  274 ALSPNDEE---IPHG-FIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS----VSPS--KES  343 (454)
T ss_pred             cCCCCccc---CCch-hHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc----cCCC--cCC
Confidence            553 1111   2234 566777778888888887776554333  3444444444444433333221    1111  233


Q ss_pred             HHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823          275 AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                      ....++..+.+....+..|+.+... -++..|.+.|++.+-+
T Consensus       344 ~~~s~i~F~~~E~cvGlfwPSimkm-RsqyIPEearstimNf  384 (454)
T KOG4332|consen  344 PSESLIGFCLFEACVGLFWPSIMKM-RSQYIPEEARSTIMNF  384 (454)
T ss_pred             chHHHHHHHHHHHHHhhcchHHHHH-HHhhCCHHHHhhhhhh
Confidence            4455777788888888888777544 4889999999876544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.32  E-value=3.2e-05  Score=70.96  Aligned_cols=120  Identities=13%  Similarity=0.114  Sum_probs=98.4

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA-------FNIYMLIFGRVLLG   80 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a-------~~~~~~~~~r~l~G   80 (365)
                      ++.+|+|.+|...+.+.-.+|..+| ++.|.+.||+|+|.++.++.+...+|-.....+       .++|.+.+..++.|
T Consensus        29 k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~  107 (250)
T PF06813_consen   29 KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGG  107 (250)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHc
Confidence            4567788999999999999999874 889999999999999999999999988877664       35678888888888


Q ss_pred             cchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           81 VGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      .+.+....                           .+.....+.+| ++||.+.++.....+++..+-..+-..+.
T Consensus       108 ~s~~~~~t---------------------------a~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  108 NSSCWFNT---------------------------ASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             ccHHHhhh---------------------------HHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            88776666                           55555668886 68999999999999998877666655554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.31  E-value=6.2e-06  Score=82.29  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccc
Q 017823          213 MSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFS  292 (365)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (365)
                      ...+...+++++|+..++.++||+|||..+.++.++..++.++......          .+.....++.-++.+...+..
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~----------~~~~e~li~GR~i~Gl~~gl~  133 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS----------APSFEMLILGRLIVGLACGLS  133 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHhHHH
Confidence            4567778899999999999999999999999998888888888777632          234555666666666665555


Q ss_pred             cccccccccccCCChhhhhHHHHHHHHH
Q 017823          293 WGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       293 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.. ..+..|..|++.||....+....
T Consensus       134 ~~~~-pmyl~E~sP~~~RG~~g~~~~~~  160 (485)
T KOG0569|consen  134 TGLV-PMYLTEISPKNLRGALGTLLQIG  160 (485)
T ss_pred             HHHH-HHHHhhcChhhhccHHHHHHHHH
Confidence            5544 45668999999999876665555

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.27  E-value=9.2e-06  Score=80.20  Aligned_cols=121  Identities=13%  Similarity=0.023  Sum_probs=89.4

Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      .........|.+.++.|.++.+.+ ...+...++..++++..+++.||+|||+.+..+..+..++.+.+....       
T Consensus        18 ~~~~~~~l~~~~~~~~~~s~~~~g-~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-------   89 (410)
T TIGR00885        18 ANDITNPMVPQFQQAFTLTAFQAA-LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-------   89 (410)
T ss_pred             HHHhHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-------
Confidence            334555677888899999999999 999999999999999999999999999999999999888877754431       


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                         ..++.+..++..++.+.+.+....+. ..+..|..|+++|++..++.+..
T Consensus        90 ---~~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  138 (410)
T TIGR00885        90 ---EIMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSF  138 (410)
T ss_pred             ---hhccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHH
Confidence               01223344455555555555444433 33446788988888888876665

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.25  E-value=0.0017  Score=64.36  Aligned_cols=141  Identities=18%  Similarity=0.078  Sum_probs=90.4

Q ss_pred             hhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCch
Q 017823          193 SFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI  272 (365)
Q Consensus       193 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  272 (365)
                      ...+..|+...|+++...+ ..=....+.++.++.+..++.+|+|..+.=..+......++.+..........   +.+.
T Consensus       278 ~~lmt~yl~~~G~s~~~ig-i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~---~~~~  353 (432)
T PF06963_consen  278 GGLMTAYLKSQGYSPSVIG-IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS---PFSS  353 (432)
T ss_pred             cHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC---Cchh
Confidence            4456677777899999998 88888899999999999999999999888777777665555444433221100   0011


Q ss_pred             hhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH-HHHHHHHHHHHhhcccCC
Q 017823          273 GYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA-GVFFFLTTFMHFFLPETK  338 (365)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~f~~~~~~~~~~~~et~  338 (365)
                      ......+..+..--.+.- ++.....-+..|..|+++|++..|+-++. ..|-++..++....|+++
T Consensus       354 ~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~  419 (432)
T PF06963_consen  354 ISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPS  419 (432)
T ss_pred             hHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChH
Confidence            222222333332222221 12222234558999999999999999888 555555555555666554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.25  E-value=1.5e-05  Score=80.07  Aligned_cols=142  Identities=11%  Similarity=0.079  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh----hhCcchHHHHh-HH
Q 017823          173 QFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILAD----RLGRKVLFLVG-GI  247 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~l~~~-~~  247 (365)
                      +.+......+..++ .......+.+.++++.|.+..... .......+.+.+..++.|+++|    |+|||+.++.. ..
T Consensus         5 ~li~~~~~~~Giq~-~~~l~~~~l~~yl~~lg~~~~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQF-GWALQLSLLTPYVQELGIPHAWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            34444444444444 455666677788899999999998 8889999999999999999999    59999988765 45


Q ss_pred             HHHHHHHHHHHHHhhh--cCCCC-CCchhh-HHHHHHHHHHHHHhhccccccccccccccCCChhhh--hHHHHHH
Q 017823          248 QMLVSRVMIGSIMADQ--IGDHG-GFSIGY-AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEII--SAGQIIT  317 (365)
Q Consensus       248 ~~~i~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~  317 (365)
                      ...++..++.......  ..+.. +..... .+..++...+..++.+....|.. ++.+|..|+++|  +.+.++.
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~  157 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYF  157 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHH
Confidence            5555555554431100  00000 000011 12233334444455555556664 556999998866  3455543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.23  E-value=9e-06  Score=80.59  Aligned_cols=119  Identities=10%  Similarity=-0.021  Sum_probs=75.9

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--H--hhhHHHHHHHHHHhhcchhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG--A--AFNIYMLIFGRVLLGVGIGF   85 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~--~--a~~~~~~~~~r~l~G~~~g~   85 (365)
                      +.|++..+.+...++..++..+++++.|+++||+|||+.+.....+.++......  .  .++.+..+..-.+.+...+.
T Consensus       273 ~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (432)
T PRK10406        273 TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSF  352 (432)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888899999999999999999988776554433332221  1  12233222222222233333


Q ss_pred             hhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHH-HHHHHHHHHhhhh
Q 017823           86 ANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVA-TAVLSANLLNYGT  155 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~-~g~~i~~~~~~~~  155 (365)
                      ..+                           ....+..|.+|+|.|+.+.++.+.... +.....|.+...+
T Consensus       353 ~~~---------------------------~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l  396 (432)
T PRK10406        353 YTS---------------------------ISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL  396 (432)
T ss_pred             HHH---------------------------HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence            333                           445667899999999999999775433 3233455555544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.22  E-value=7.8e-06  Score=80.11  Aligned_cols=120  Identities=10%  Similarity=-0.145  Sum_probs=97.9

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +.+|.|+.+.|.+.+...++..++++..+++.||+++|+.+..+. +.++.....++.++++...+.-++.|++.+...+
T Consensus       234 ~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~  312 (393)
T PRK11195        234 VALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVV  312 (393)
T ss_pred             HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence            456788999999999999999999999999999999998887775 3344444556677788778888899999888877


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCC-cchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKN-RGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                                 ...+.+.|..|+++ +|++.+..+....+|..++..+...+.
T Consensus       313 ---------------------------~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        313 ---------------------------PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             ---------------------------hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                                       66667777766654 799999999999999999888877664

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.22  E-value=9e-06  Score=81.86  Aligned_cols=134  Identities=13%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh-CcchHHHHhHHHH
Q 017823          172 LQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRL-GRKVLFLVGGIQM  249 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~l~~~~~~~  249 (365)
                      +.....+....... ..++....+.|.++ ++.|+++.++. ...........++.+++|+++||+ |||+.+..+.++.
T Consensus         9 ~~l~~l~~~~~~e~-fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          9 RAIYYVVALQIWEY-FSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            33344444444333 35566667888887 45799999998 888888888899999999999999 9999999999888


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChh--hhhHHHHHHHHH
Q 017823          250 LVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLE--IISAGQIITVAA  320 (365)
Q Consensus       250 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~  320 (365)
                      .++.+.+....            .......+...+...+.+. ..+....+.+|.+|++  .|.++.++.+..
T Consensus        87 ~lg~lll~~~~------------~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~  146 (493)
T PRK15462         87 AIGHVVLGASE------------IHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAA  146 (493)
T ss_pred             HHHHHHHHHhh------------cchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHH
Confidence            88876554320            0011112222222233332 2233345679999986  688888887766

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.21  E-value=9e-06  Score=82.59  Aligned_cols=101  Identities=11%  Similarity=-0.000  Sum_probs=79.8

Q ss_pred             HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHH
Q 017823          201 RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILV  280 (365)
Q Consensus       201 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (365)
                      +....+..... ...++..++..+|+++.|+++||+|||+++.++..+..++.+..++.             ++.+...+
T Consensus       111 ~~~c~~~~~~~-~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~  176 (521)
T KOG0255|consen  111 NLVCDSSTLVA-LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLI  176 (521)
T ss_pred             ceeeCcHhHHH-HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHH
Confidence            44455666666 78899999999999999999999999999999999999998777775             33455566


Q ss_pred             HHHHHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823          281 LICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                      +-++.+++.+. ...+.+.+..|.++++.|+.+..+
T Consensus       177 ~Rfl~G~~~~~-~~~~~~~~~~E~~~~~~R~~~~~~  211 (521)
T KOG0255|consen  177 FRFLSGFFGSG-PLTVGFGLVAEIVSPKQRGLALTL  211 (521)
T ss_pred             HHHHHHhhccc-hhHHhHhhheeecCcchhhHHHHH
Confidence            66665555543 344556777999999999999888

>PRK10133 L-fucose transporter; Provisional

Probab=98.20  E-value=1.8e-05  Score=78.84  Aligned_cols=121  Identities=13%  Similarity=-0.040  Sum_probs=88.5

Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      .......+.|.+.+++|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.+++....       
T Consensus        41 ~~~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-------  112 (438)
T PRK10133         41 ANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-------  112 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            445666778888889999999999 999999999999999999999999999999999999988887653221       


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                         ..++.+..++...+.+.+.+...... ..+..|..|++.|....++.+..
T Consensus       113 ---~a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~  161 (438)
T PRK10133        113 ---EIMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTF  161 (438)
T ss_pred             ---hcCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHH
Confidence               01224455555666666665544444 33446777777666555555554

>TIGR01272 gluP glucose/galactose transporter

Probab=98.19  E-value=9.1e-06  Score=77.18  Aligned_cols=118  Identities=8%  Similarity=-0.048  Sum_probs=92.9

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      .+|+++++.+...+.+..+..++.+..+++.||+|+|+.+..+..+..++.++....++... ..+-++.|++.+..+| 
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P-  249 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFP-  249 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHH-
Confidence            46888999999999999999999999999999999999988888877777766655544332 3455588999999999 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                                                ...+...+..|+ +.+.+.++. ....+|..+.|++.+.+.+
T Consensus       250 --------------------------~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       250 --------------------------TIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             --------------------------HHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence                                      777777777664 455666665 4566888999988777764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PTZ00207 hypothetical protein; Provisional

Probab=98.12  E-value=1.8e-05  Score=81.17  Aligned_cols=121  Identities=12%  Similarity=0.046  Sum_probs=81.0

Q ss_pred             ccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          189 INVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       189 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      .+.+..+.|.+.+++|++..+.. ....+ +.......++.|++.||+|+|+++.++.++..++.++.+.....      
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~l~-~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~------  114 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRDLS-TITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE------  114 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHH-HHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence            34556778888899999998887 55554 33334566788999999999999999999999999888775210      


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                       .-..+.+...+..++.+.+.+...... .....+.+| ++||++.|+....
T Consensus       115 -~i~~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~  163 (591)
T PTZ00207        115 -VIEGSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTF  163 (591)
T ss_pred             -cccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHH
Confidence             001223334444444444433222222 334478887 6789999988877

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.12  E-value=1.8e-05  Score=79.95  Aligned_cols=135  Identities=15%  Similarity=0.187  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHhcccccchhhcHHHHH-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-hCcchHHHHhHHH
Q 017823          171 RLQFVMAILIPFFQHVTRINVISFYAPVLF-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADR-LGRKVLFLVGGIQ  248 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~  248 (365)
                      ++..+..+...+...+ .++....+.+.|+ ++.|++.+++. ..............+++|+++|| +|||+.+..+.++
T Consensus        13 p~~~~~~~~~~~~er~-~~y~~~~~l~~yl~~~lg~~~~~a~-~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         13 PRPFFMIFFVELWERF-GYYGVQGILAVFFVKQLGFSQEQAF-ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             ChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            3444444444444433 4555555566665 66899988887 77777777788888899999999 9999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhh--hhHHHHHHHHH
Q 017823          249 MLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEI--ISAGQIITVAA  320 (365)
Q Consensus       249 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~  320 (365)
                      ..++.+......            .......+...+.+.+.+... |....+..|.+|++.  |+++.++.+..
T Consensus        91 ~~~g~~~~~~~~------------~~~~ll~~~~~l~~ig~g~~~-~~~~~li~~~~p~~~~~~~~~~~~~~~~  151 (489)
T PRK10207         91 LAIGYFMTGMSL------------LKPDLIFIALGTIAVGNGLFK-ANPASLLSKCYPPKDPRLDGAFTLFYMS  151 (489)
T ss_pred             HHHHHHHHHHhc------------cchhHHHHHHHHHHhcccccc-CCHHHHHHHhcCCCchhhhcchhHHHHH
Confidence            999888877641            111222233334444444333 334566789998874  45544444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.12  E-value=6.3e-06  Score=91.53  Aligned_cols=121  Identities=13%  Similarity=0.013  Sum_probs=102.5

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--------------------hh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA--------------------FN   68 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a--------------------~~   68 (365)
                      +.+|.+..+.+++.+.+.++..+++++.|++.|+.++++.+..+.++.++..+..++.                    ++
T Consensus       254 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  333 (1140)
T PRK06814        254 ETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH  333 (1140)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence            3467779999999999999999999999999998887776666666655555444442                    67


Q ss_pred             HHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHH
Q 017823           69 IYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSA  148 (365)
Q Consensus        69 ~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~  148 (365)
                      .+.+.++.++.|++.+...+                           ...+++.+..|+++||++++..+....+|..++
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~---------------------------~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig  386 (1140)
T PRK06814        334 GWRILIDLFGLAAAGGLYIV---------------------------PLFAALQAWANPAHRARVIAANNVLNAAFMVAG  386 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHhHH---------------------------HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHH
Confidence            78888899999999999988                           888889999999999999999999999999999


Q ss_pred             HHHhhhhc
Q 017823          149 NLLNYGTQ  156 (365)
Q Consensus       149 ~~~~~~~~  156 (365)
                      +++.+.+.
T Consensus       387 ~~~~g~l~  394 (1140)
T PRK06814        387 TIILALLQ  394 (1140)
T ss_pred             HHHHHHHH
Confidence            99887775

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.11  E-value=2.3e-05  Score=63.52  Aligned_cols=91  Identities=22%  Similarity=0.201  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 017823          216 IVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGP  295 (365)
Q Consensus       216 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (365)
                      ....++..++.++.+++.||+|||+.+..+.....++.+.....             ++.+...+...+.+.+.+.. .+
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~   70 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFA-LV   70 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHH-HH
Confidence            34567788899999999999999999988887777776665543             12334444445555554433 34


Q ss_pred             ccccccccCCChhhhhHHHHHHHHH
Q 017823          296 LRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       296 ~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ....+..|.+|+++|+++.++.+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~   95 (141)
T TIGR00880        71 AGAALIADIYPPEERGVALGLMSAG   95 (141)
T ss_pred             hHHHHHHHHCChhhhhHHHHHHHHh
Confidence            4556678999999999999998876

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.11  E-value=9.4e-06  Score=77.55  Aligned_cols=97  Identities=18%  Similarity=0.028  Sum_probs=71.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHH
Q 017823          208 STSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKA  287 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (365)
                      ..++ .+-+.+.+...+.+...|.++||+|||.++..|.+..++..+.++...             +....++.-.+.+ 
T Consensus        68 ~yaG-flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-------------~F~afv~aR~l~G-  132 (451)
T KOG2615|consen   68 FYAG-FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-------------NFAAFVLARFLGG-  132 (451)
T ss_pred             hhhh-hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhh-
Confidence            3455 788889999999999999999999999999999999999888777752             2222222233333 


Q ss_pred             hhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          288 GFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       288 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+..-.+. .-++++|++++|.|+.+++.....
T Consensus       133 i~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a  164 (451)
T KOG2615|consen  133 IFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTA  164 (451)
T ss_pred             hccCchHH-HHHHHHhhcChhhccceeeeeehh
Confidence            33333343 456779999999999888777666

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.09  E-value=1e-05  Score=84.36  Aligned_cols=143  Identities=13%  Similarity=-0.050  Sum_probs=96.8

Q ss_pred             HHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHH
Q 017823          176 MAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVM  255 (365)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~  255 (365)
                      .......+.+.........-.|.+.++++++..+.+ .+.+...++..++.++.+++.||.+||+.+.++.++++++.++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll  114 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL  114 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence            333333444333333444455666788999999998 8999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhhcCCCC--------------------C-----------------Cc-hhhHHHHHHHHHHHHHhhcccccccc
Q 017823          256 IGSIMADQIGDHG--------------------G-----------------FS-IGYAYLILVLICVYKAGFAFSWGPLR  297 (365)
Q Consensus       256 ~~~~~~~~~~~~~--------------------~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (365)
                      +++..........                    .                 .. .......++.-++.+++.+ ...++.
T Consensus       115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~  193 (633)
T TIGR00805       115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLG  193 (633)
T ss_pred             HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcC
Confidence            8776322110000                    0                 00 0012233344444444443 334555


Q ss_pred             ccccccCCChhhhhHHHHHHHHH
Q 017823          298 WLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       298 ~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..++.|.+|++.|+...++.+..
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~  216 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESI  216 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHH
Confidence            67889999999999999887766

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09848 glucuronide transporter; Provisional

Probab=98.08  E-value=2e-05  Score=78.52  Aligned_cols=120  Identities=8%  Similarity=-0.020  Sum_probs=92.9

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhcchhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF--NIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~--~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+|.++...++......++..++.++.+++.||+|+|+.+..+..+..++.+...+.+  +++.+.+..++.|+|.+...
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~  337 (448)
T PRK09848        258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM  337 (448)
T ss_pred             ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444677888999999999999999999999988888877776653  67777778889999999998


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCC-------CcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPK-------NRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      +                           ...++..|..|.+       ++|...+..+....+|..+++.+.+.+.
T Consensus       338 ~---------------------------~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        338 T---------------------------VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             H---------------------------HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8                           6777777776643       4588889999999999999888876654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.05  E-value=1.1e-05  Score=76.70  Aligned_cols=101  Identities=14%  Similarity=0.004  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhh
Q 017823           26 YIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNN  105 (365)
Q Consensus        26 ~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~  105 (365)
                      .+.-.-|.++.+.+.||+|||+.+.++.+++++..++...+.+.-...+.-+..-+...+.++                 
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fq-----------------  453 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQ-----------------  453 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchhe-----------------
Confidence            456677889999999999999999999999999988887775433333333333334455566                 


Q ss_pred             hhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhh
Q 017823          106 FQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNY  153 (365)
Q Consensus       106 ~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  153 (365)
                                ..+.|..|.+|.+-|+...|.-....-+|.++.|+++.
T Consensus       454 ----------vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~  491 (528)
T KOG0253|consen  454 ----------VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAM  491 (528)
T ss_pred             ----------EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHH
Confidence                      88999999999999999999999999999999999983

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.04  E-value=2.9e-05  Score=76.91  Aligned_cols=114  Identities=14%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhcchhhhhhhhhhh
Q 017823           16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF--NIYMLIFGRVLLGVGIGFANQVSVWL   93 (365)
Q Consensus        16 ~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~--~~~~~~~~r~l~G~~~g~~~~~~~~~   93 (365)
                      ...+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+  |.+.+++.-++.|++.+..+.     
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~-----  334 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFV-----  334 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccc-----
Confidence            5678888899999999999999999999999999999999999999988886  999999999999999999998     


Q ss_pred             hhhcccccchhhhhHHHhhcccccceeecccCCC-------CCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           94 FYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPP-------KNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                            ...++++|..+.       ++.|...+......-+|..+++.+.+.+.
T Consensus       335 ----------------------~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  335 ----------------------IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             ----------------------ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence                                  888888887763       33577888888888888888887766554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.00  E-value=1.4e-07  Score=93.60  Aligned_cols=99  Identities=16%  Similarity=0.111  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhh
Q 017823          210 SLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGF  289 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (365)
                      .. +......++..+|+++.|+++||+|||+.+..+..+..++.++..+..          ...+.+...+.-.+.+++.
T Consensus        48 ~~-~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~R~~~G~~~  116 (451)
T PF00083_consen   48 SS-LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP----------SYNNFWMLLIGRFLIGFGI  116 (451)
T ss_pred             HH-HHHHHHHhhhcccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc
Confidence            34 677888999999999999999999999999999999988888887752          0013444555555666665


Q ss_pred             ccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          290 AFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       290 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.... ....+..|..|++.|+...++....
T Consensus       117 g~~~~-~~~~~~~E~~~~~~R~~~~~~~~~~  146 (451)
T PF00083_consen  117 GGAYV-VSPIYISEIAPPKHRGFLSSLFQLF  146 (451)
T ss_pred             ccccc-ccccccccccccccccccccccccc
Confidence            54443 4467779999999998776666555

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.99  E-value=2.2e-05  Score=72.41  Aligned_cols=128  Identities=9%  Similarity=-0.004  Sum_probs=99.5

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHhhcchhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTA-FLAGSALRGAAFNIYMLIFGRVLLGVGIGFA   86 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~-~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~   86 (365)
                      ++.+|+|+...+.+.+..+...++.+++.|.++||+|++...+.+..+ +.++.....|+  ++.=..+..++|++....
T Consensus       292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysll  369 (459)
T KOG4686|consen  292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLL  369 (459)
T ss_pred             HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHH
Confidence            467888999999999999999999999999999999999887765544 44554444443  333445667788876665


Q ss_pred             hhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcch
Q 017823           87 NQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGW  164 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gw  164 (365)
                      ..                           +.-..++...|.++.|.+.+..|...++|..+-+.+++.+.+..+.+-|
T Consensus       370 Ac---------------------------slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~  420 (459)
T KOG4686|consen  370 AC---------------------------SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN  420 (459)
T ss_pred             HH---------------------------HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence            54                           3444566677888999999999999999999999999999977654334

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.97  E-value=6.1e-05  Score=72.95  Aligned_cols=110  Identities=15%  Similarity=0.057  Sum_probs=82.6

Q ss_pred             HHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhH
Q 017823          196 APVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYA  275 (365)
Q Consensus       196 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  275 (365)
                      .+.+-+++++|+.+.. ++..+..+.+.+.+++-|++.||+|.|+....+.++..+-.+...+..         ..+++ 
T Consensus        37 ~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~---------~~~~~-  105 (417)
T COG2223          37 GVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV---------TYPST-  105 (417)
T ss_pred             HhhhccccCCCHHHHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc---------cCCch-
Confidence            3344478999999999 999999999999999999999999999999999999888888888763         11122 


Q ss_pred             HHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHH
Q 017823          276 YLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITV  318 (365)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  318 (365)
                      +..+++....+.+-  +.-.+....+++.+|+|++|.+.|+.-
T Consensus       106 ~~ll~~gll~G~~G--asFav~m~~~s~~fP~~~qG~AlGI~g  146 (417)
T COG2223         106 WQLLVIGLLLGLAG--ASFAVGMPNASFFFPKEKQGLALGIAG  146 (417)
T ss_pred             HHHHHHHHHHhccc--ceehcccccccccCChhhhhHHHHHhc
Confidence            33333333333322  222233455689999999999999987

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.94  E-value=0.00012  Score=72.09  Aligned_cols=119  Identities=15%  Similarity=0.177  Sum_probs=101.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHH----HHHHhhcchhhhh
Q 017823           13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA-FNIYMLIF----GRVLLGVGIGFAN   87 (365)
Q Consensus        13 ~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a-~~~~~~~~----~r~l~G~~~g~~~   87 (365)
                      .+.+..+...++..++-...-...+++..|+|.|+.+.++.+..++=..+.+.. ++.+....    ...+.|+..+...
T Consensus       240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~  319 (400)
T PF03825_consen  240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH  319 (400)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence            456677878888888888888999999999999999999999999998888887 55444333    3456999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHH-HHHHHHHHHHHHhhhhccc
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQV-CVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~~  158 (365)
                      .                           ....++.+..|++.|+++.+++.. ..++|..+|..+++.+.+.
T Consensus       320 ~---------------------------a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~  364 (400)
T PF03825_consen  320 A---------------------------ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA  364 (400)
T ss_pred             H---------------------------HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9                           999999999999999999999876 6789999999999998843

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.92  E-value=2.6e-05  Score=77.57  Aligned_cols=116  Identities=9%  Similarity=0.065  Sum_probs=92.3

Q ss_pred             cchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCC
Q 017823          190 NVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGG  269 (365)
Q Consensus       190 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  269 (365)
                      ..+.+++--.+++.+-.+..-+ ....+...+.++.-+.++++.+|+|+-+++.+++.+..+-.+.+...          
T Consensus       388 ~lv~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L----------  456 (618)
T KOG3762|consen  388 GLVFTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL----------  456 (618)
T ss_pred             HHHHHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence            3334444444577776666666 77777888889999999999999999999999988888887777766          


Q ss_pred             CchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          270 FSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                         .++|..+..-++-+...+..|..+ .++++...|++.|++++++....
T Consensus       457 ---~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~  503 (618)
T KOG3762|consen  457 ---QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGI  503 (618)
T ss_pred             ---cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHH
Confidence               557777777777778888777776 46779999999999999999988

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.91  E-value=0.00012  Score=74.48  Aligned_cols=95  Identities=18%  Similarity=0.089  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhc
Q 017823          211 LLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFA  290 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (365)
                      . +..+...++..++.++.|+++|++|||+.+.++.+...++.++....             .+.....+.-++.+++.+
T Consensus        92 s-~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G  157 (513)
T KOG0254|consen   92 G-LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVG  157 (513)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchh
Confidence            5 78899999999999999999999999999999999999999999886             245566667777777766


Q ss_pred             cccccccccccccCCChhhhhHHHHHHHHH
Q 017823          291 FSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       291 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ...... ..+.+|..|++.||...+.....
T Consensus       158 ~~~~~~-piy~sEiap~~~RG~l~~~~~l~  186 (513)
T KOG0254|consen  158 GASVLA-PVYISEIAPAHIRGTLVSLYQLF  186 (513)
T ss_pred             hhhhcc-hhhHhhcCChhhhHHHHHHHHHH
Confidence            554444 56779999999999888776655

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.89  E-value=0.0001  Score=67.57  Aligned_cols=123  Identities=18%  Similarity=0.175  Sum_probs=85.3

Q ss_pred             ccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCC
Q 017823          187 TRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGD  266 (365)
Q Consensus       187 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~  266 (365)
                      ...+.+..|.|.+-++.|++.++.. .+.....++..+ .++.|.+.||+|.+.++.++.....++..++......    
T Consensus        16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~-~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~----   89 (250)
T PF06813_consen   16 GTTYTFSAYSPQLKSRLGYSQSQLN-TLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG----   89 (250)
T ss_pred             CcccchhhhhHHHHHHhCCCHHHHH-HHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            3567778899999999999999988 777777788776 5889999999999999999999999999888776411    


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhhcccc-ccccccccccCCChhhhhHHHHHHHHH
Q 017823          267 HGGFSIGYAYLILVLICVYKAGFAFSW-GPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                        ..+....+...+..++.  +.+..+ .........+++|. +||++.|+.-+.
T Consensus        90 --~i~~~~~~~~~~~~~l~--~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~  139 (250)
T PF06813_consen   90 --RIPSLPVWLMCLFLFLG--GNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGF  139 (250)
T ss_pred             --ccCccchHHHHHHHHHH--cccHHHhhhHHHHHHHHhCcc-ccCceehhhhHH
Confidence              11112233333333332  222222 22222333588985 799988887766

>PRK09669 putative symporter YagG; Provisional

Probab=97.86  E-value=0.00012  Score=72.72  Aligned_cols=115  Identities=17%  Similarity=0.111  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 017823           16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA--AFNIYMLIFGRVLLGVGIGFANQVSVWL   93 (365)
Q Consensus        16 ~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~--a~~~~~~~~~r~l~G~~~g~~~~~~~~~   93 (365)
                      +..+.+.....+...++.+++++++||+|+|+.+..+..+..+......+  .++++.+++..++.|++.+...+     
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-----  338 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTP-----  338 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH-----
Confidence            34455566667888889999999999999999998887766554433222  35677788888999999999988     


Q ss_pred             hhhcccccchhhhhHHHhhcccccceeecccCC-------CCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           94 FYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-------PKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                                            ...++++|..+       .++.|...+.......+|..+|+.+++.+.+
T Consensus       339 ----------------------~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        339 ----------------------LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             ----------------------HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  77778877765       2234566788888888999998888877653

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.82  E-value=0.00014  Score=73.11  Aligned_cols=116  Identities=11%  Similarity=0.079  Sum_probs=88.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhhcchhhhhh
Q 017823           14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA-----AFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus        14 ~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~-----a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +....+.+.+...++..++.++++++.||+|+|+.+..+..+.+++.+...+     .++.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777889999999999999999999998888776666655432     34567777778888999988888


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCC-------CCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-------PKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                                 ...+++.|..+       .++.|...+......-+|..+++.+.+.+.
T Consensus       344 ---------------------------~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        344 ---------------------------LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             ---------------------------HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       77777888755       223355778888888888888887776665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.0001  Score=73.83  Aligned_cols=106  Identities=16%  Similarity=0.069  Sum_probs=86.9

Q ss_pred             HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHH
Q 017823          202 TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVL  281 (365)
Q Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (365)
                      ++..++++.+ .+.+....+.+++.+.++++.||+|-|+++..+.++..+..++......           ...+..+++
T Consensus        67 ~~~ws~~~k~-~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~  134 (466)
T KOG2532|consen   67 EYDWSSTEKG-LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVL  134 (466)
T ss_pred             eecCCHHHHH-HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHH
Confidence            4567888888 8999999999999999999999999999999999999999988888742           123355666


Q ss_pred             HHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          282 ICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      -.+.+++.+..+..+ ..+.++-.|+++|++..++..+.
T Consensus       135 R~lqGl~~g~~~pa~-~~i~~~W~P~~Ers~~~ail~~g  172 (466)
T KOG2532|consen  135 RFLQGLGQGVLFPAI-GSILAKWAPPNERSTFIAILTAG  172 (466)
T ss_pred             HHHhHHHHhHHHhhh-hceeeeECCHHHHHHHHHHHHHH
Confidence            667777777666665 45668999999999998888777

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.78  E-value=5.7e-05  Score=76.53  Aligned_cols=124  Identities=12%  Similarity=0.014  Sum_probs=112.8

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG--RKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~G--rk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      +.+++.++.+.+.++..+...++.++.|+++|+..  ++....++.+..+++.....++++++.++..-++.|+..|...
T Consensus       327 ~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~  406 (509)
T KOG2504|consen  327 SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFS  406 (509)
T ss_pred             hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999988  5666678888888888899999999999999999999999998


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccC
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKV  160 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  160 (365)
                      .                           ..+..+.|..+.++-..+.|+.....+++.++||++++.+.+..+
T Consensus       407 ~---------------------------l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg  452 (509)
T KOG2504|consen  407 S---------------------------LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG  452 (509)
T ss_pred             H---------------------------HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence            8                           666778999999999999999999999999999999998876654

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.77  E-value=0.0051  Score=64.33  Aligned_cols=133  Identities=15%  Similarity=0.208  Sum_probs=104.9

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVRSTAFLAGSALRGAAFN--------IYMLIFGRVLL   79 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~a~~--------~~~~~~~r~l~   79 (365)
                      +.++++.+....+...+.-...+..+++|.++|+ +||++.+.++.++..+|.++.+++..        ....+++-.+.
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi   95 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI   95 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence            4567778888888888888889999999999996 69999999999999999888776521        23466777888


Q ss_pred             hcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCC---cchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           80 GVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKN---RGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        80 G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      .+|.|+.-+                           ...+...|-+++++   |.....++..+.++|.++++.+...+.
T Consensus        96 a~G~GgiKp---------------------------~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~  148 (654)
T TIGR00926        96 ALGTGGIKP---------------------------CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR  148 (654)
T ss_pred             Hhhcccccc---------------------------CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999988                           88888888776543   566777888899999999988887776


Q ss_pred             ccc----CCcchHHHH
Q 017823          157 KIK----VGWGWRISL  168 (365)
Q Consensus       157 ~~~----~~~gwr~~f  168 (365)
                      +..    ...+|...|
T Consensus       149 ~~~~~fg~~~~~~~aF  164 (654)
T TIGR00926       149 GDVGCFGCQDCYPLAF  164 (654)
T ss_pred             HhhcccccCcchHHHH
Confidence            321    224587777

>TIGR00788 fbt folate/biopterin transporter

Probab=97.74  E-value=6.1e-05  Score=75.71  Aligned_cols=123  Identities=7%  Similarity=-0.058  Sum_probs=105.7

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHH
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA----------FNIYMLIFGRVL   78 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a----------~~~~~~~~~r~l   78 (365)
                      +..|+++++.|.+.....++..++....+++.+|++.|+.+.++.++.+++.......          ++.+..+..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            4688999999999999999999999999999999999999999999998877554311          333455566778


Q ss_pred             hhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccc
Q 017823           79 LGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKI  158 (365)
Q Consensus        79 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  158 (365)
                      .+++.+....                           ....++.+..|++++|...++.+...++|..+++.+++.+.+.
T Consensus       361 ~~~~~g~~~~---------------------------~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       361 AEVLAQLKFM---------------------------PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             HHHHHHHHHc---------------------------cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888                           8889999999999999999999999999999999988888743

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.72  E-value=0.00012  Score=74.15  Aligned_cols=110  Identities=11%  Similarity=0.003  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHhhcchh
Q 017823           18 LTTFTSSLYIAGLIASLFA----SSVTRAFGRKASILVRSTAFLAGSALRGAAFN---------IYMLIFGRVLLGVGIG   84 (365)
Q Consensus        18 ~~~~~s~~~i~~~i~~~~~----g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~---------~~~~~~~r~l~G~~~g   84 (365)
                      .+++.+...+...+.+++.    +++.||+++++.+.++.++.+++.+..+.+.+         .++++..+++.|+|++
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4555556665555555555    66666777778889999999999888777755         4678999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYG  154 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  154 (365)
                      ...|                           ....++.+..|++.||+.++.+....++|..++..+...
T Consensus       398 ~~~p---------------------------~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~  440 (500)
T PRK09584        398 MISG---------------------------LGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL  440 (500)
T ss_pred             HHhH---------------------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999                           999999999999999999999998888888888777643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.72  E-value=0.00028  Score=72.38  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=79.6

Q ss_pred             HHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhH
Q 017823          196 APVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYA  275 (365)
Q Consensus       196 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  275 (365)
                      .+.+.++.|-++...  ++.+...+...++.++.|.++|.+|||..++.+.++..++.++.+..             ++.
T Consensus        67 l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------------~~~  131 (599)
T PF06609_consen   67 LPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------------QNM  131 (599)
T ss_pred             HHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------CcH
Confidence            455567788766555  46677788899999999999999999999999999999998887765             223


Q ss_pred             HHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          276 YLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ...+....+.+++.+  ...+....++|..|.+.|..+.++....
T Consensus       132 ~~~iag~~l~GvgaG--~~~~~~~~isEl~p~k~R~~~~~~~~~~  174 (599)
T PF06609_consen  132 NTFIAGMVLYGVGAG--VQELAALAISELVPNKWRGLGLAIASIP  174 (599)
T ss_pred             HHHHHHHHHHHHhhH--HHHHHHHHHHHhcccchhhhHhHHHHHH
Confidence            344555556555543  3334455579999999998877766544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.70  E-value=0.00018  Score=53.64  Aligned_cols=65  Identities=18%  Similarity=0.350  Sum_probs=55.7

Q ss_pred             HHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHH
Q 017823          183 FQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQ  248 (365)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~  248 (365)
                      +..+.+.....-|.|.++++.|+++.+.+ ....+..+..++++++.|.++||.++++........
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33455667777899999999999999999 999999999999999999999999999887765543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.68  E-value=0.0001  Score=72.31  Aligned_cols=116  Identities=12%  Similarity=0.098  Sum_probs=101.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhh
Q 017823           14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWL   93 (365)
Q Consensus        14 ~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~   93 (365)
                      +.+..|.+.+..-+.-++.-.+..++.+|+|.|+.++++.++..+=-.++++++|++.+.+.+.+.|+-.+....     
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lv-----  331 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLV-----  331 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH-----
Confidence            356689999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             hhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH-HHHHHHHHHHHHHHHhhhhc
Q 017823           94 FYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG-FQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~  156 (365)
                                            ....|+.+.+|+|-.+....+ .+....+|..+.+.+++.+.
T Consensus       332 ----------------------a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly  373 (412)
T PF01306_consen  332 ----------------------AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY  373 (412)
T ss_dssp             ----------------------HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence                                  999999999998877777666 46788889988888888887

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.60  E-value=6.9e-05  Score=73.24  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHH-HHHHHHHHHHHHHHhhhHHHH------------
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKASILV-RSTAFLAGSALRGAAFNIYML------------   72 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr----~Grk~~l~~-~~~~~~~~~~~~~~a~~~~~~------------   72 (365)
                      ..|++....+.+.-...+...+.+|+.|+.+||    |||||.++. +..+..++.++.+++.++..+            
T Consensus        61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~r  140 (498)
T KOG0637|consen   61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPR  140 (498)
T ss_pred             HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchH
Confidence            356667788888888888899999999999996    898887654 666778888888888655333            


Q ss_pred             -----HHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcch-hhhHHHHHHHHHHH
Q 017823           73 -----IFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGA-FNIGFQVCVATAVL  146 (365)
Q Consensus        73 -----~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~g~~  146 (365)
                           +++-.+.-+..-....                           .+-+++.|...+++|.+ +++++....++|..
T Consensus       141 ai~~~~lg~~LLD~A~n~~qg---------------------------p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv  193 (498)
T KOG0637|consen  141 AIVLFILGFWLLDVANNTLQG---------------------------PCRALLADLARGDAKKTRANSVFSFFMAVGNV  193 (498)
T ss_pred             HHHHHHHHhHHHHhhhhhhhh---------------------------hHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence                 3333333333333333                           77788889887776666 99999999999999


Q ss_pred             HHHHHhhhh
Q 017823          147 SANLLNYGT  155 (365)
Q Consensus       147 i~~~~~~~~  155 (365)
                      +|...+.+.
T Consensus       194 LGY~~g~y~  202 (498)
T KOG0637|consen  194 LGYALGSYL  202 (498)
T ss_pred             eeeeccccc
Confidence            998888643

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.50  E-value=0.00091  Score=64.96  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=105.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhhcchh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTR-AFGRKASILVRSTAFLAGSALRGA---AFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~d-r~Grk~~l~~~~~~~~~~~~~~~~---a~~~~~~~~~r~l~G~~~g   84 (365)
                      +-+|+|..+.+.++.....|..++-...|++.. |.++|+....++...+++..+..+   ..+.+.+-.+-++.|++.|
T Consensus       237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G  316 (403)
T PF03209_consen  237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG  316 (403)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence            347889999999999999999999999998887 677777777777776666555443   3678999999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                      ....                           ...+.+.+..++++.|..+|.+....+++..++..+++.+.|
T Consensus       317 ~f~v---------------------------gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  317 LFTV---------------------------GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHH---------------------------HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999                           888889999999999999999999999999999999988764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.46  E-value=0.00047  Score=67.65  Aligned_cols=102  Identities=17%  Similarity=0.094  Sum_probs=68.5

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCch-hhHHHHHHHHH
Q 017823          205 LSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI-GYAYLILVLIC  283 (365)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  283 (365)
                      +++.... .+.....++.++|+++.|++.||+|||++.....+++.++.++.+...       ...++ .--+.....-.
T Consensus        81 ~ps~i~~-~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~-------~~~~~~~~m~~L~~~R~  152 (538)
T KOG0252|consen   81 YPSGVLA-LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV-------GTTSPLGVMMTLCFFRF  152 (538)
T ss_pred             CCchHHH-HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC-------CCCCCcchhhHHHHHHH
Confidence            3344445 778888899999999999999999999999999999999888555431       11111 11122222222


Q ss_pred             HHHHhhccccccccccccccCCChhhhhHHHH
Q 017823          284 VYKAGFAFSWGPLRWLVPSENFPLEIISAGQI  315 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  315 (365)
                      +.+++.+ +--|+..++.+|....+.||+-.+
T Consensus       153 ~LGiGIG-GDYPlSAtI~SE~an~~~RGa~ia  183 (538)
T KOG0252|consen  153 LLGIGIG-GDYPLSATIMSESANKKTRGAFIA  183 (538)
T ss_pred             Hhhcccc-CCCcchHHHhhhhhhhccccceeE
Confidence            3333333 334777888899999998886443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.43  E-value=0.00072  Score=51.16  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=58.1

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYML   72 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~   72 (365)
                      ++.++|.++.+++.+..++|+.+|++...++.++..+++.+..+.+...+..+.+++.++++..
T Consensus        20 ~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   20 ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            4556779999999999999999999999999999888999999999999999999999887654

Note that many members are hypothetical proteins.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=9.3e-05  Score=71.26  Aligned_cols=123  Identities=15%  Similarity=0.008  Sum_probs=96.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhh
Q 017823           15 SQLLTTFTSSLYIAGLIASLFASSVTRAFG--RKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVW   92 (365)
Q Consensus        15 ~~~~~~~~s~~~i~~~i~~~~~g~l~dr~G--rk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~   92 (365)
                      ..+.|...--..+.++++..+.|.++||++  |-.....+.+.....+....+++++.++++-++..|++.+....    
T Consensus       305 ~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~da----  380 (464)
T KOG3764|consen  305 GWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADA----  380 (464)
T ss_pred             CcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHH----
Confidence            457777777788999999999999999999  64445667777777888888999999999999999998888776    


Q ss_pred             hhhhcccccchhhhhHHHhhcccccceeecccCC---CC---CcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHH
Q 017823           93 LFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP---PK---NRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRI  166 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~---~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~  166 (365)
                                             +......+..+   .+   --|...++.+.++.+|..+||.+++.+.   +..|++|
T Consensus       381 -----------------------sl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv---~~iGF~w  434 (464)
T KOG3764|consen  381 -----------------------SLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV---EAIGFEW  434 (464)
T ss_pred             -----------------------HHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe---eehhHHH
Confidence                                   33222232222   22   4578999999999999999999999988   4445554


Q ss_pred             H
Q 017823          167 S  167 (365)
Q Consensus       167 ~  167 (365)
                      .
T Consensus       435 l  435 (464)
T KOG3764|consen  435 L  435 (464)
T ss_pred             H
Confidence            4

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.25  E-value=0.00037  Score=69.58  Aligned_cols=117  Identities=13%  Similarity=0.057  Sum_probs=104.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhh
Q 017823           13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVW   92 (365)
Q Consensus        13 ~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~   92 (365)
                      -.+...|........+-...-++.+++.+|+|+-+++.+++....+=-+..+..+|+|+.+...+++|+..+..+.    
T Consensus       403 ~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWa----  478 (618)
T KOG3762|consen  403 GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWA----  478 (618)
T ss_pred             CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHH----
Confidence            3466777666677777888889999999999999999999999999999999999999999999999999999999    


Q ss_pred             hhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHH-HHHHHHHHHHHHhhhhc
Q 017823           93 LFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQV-CVATAVLSANLLNYGTQ  156 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~  156 (365)
                                             ...+|++..+||+.|..+.++.+. ..++|--+|.++|+...
T Consensus       479 -----------------------a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v  520 (618)
T KOG3762|consen  479 -----------------------AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV  520 (618)
T ss_pred             -----------------------HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh
Confidence                                   999999999999999999999876 67788888888888777

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.21  E-value=0.0046  Score=59.20  Aligned_cols=83  Identities=19%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHH
Q 017823          169 KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQ  248 (365)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~  248 (365)
                      +.+++.+....+....    -+.+..|.-.+.+++|+++.+.. .+.......+.+...+.|.++||+|||+..+..+++
T Consensus        34 ~Fqr~yl~vY~La~~a----DWLQGpY~Y~LY~~yg~~~~qIa-~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cil  108 (354)
T PF05631_consen   34 RFQRKYLLVYLLAMAA----DWLQGPYLYALYESYGFSEHQIA-ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCIL  108 (354)
T ss_pred             HHHHHHHHHHHHHHHH----HHhhcchhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            5555555555554433    33444455555688999999998 888888888889999999999999999998888888


Q ss_pred             HHHHHHHH
Q 017823          249 MLVSRVMI  256 (365)
Q Consensus       249 ~~i~~~~~  256 (365)
                      ..++++.-
T Consensus       109 y~~scl~k  116 (354)
T PF05631_consen  109 YSLSCLTK  116 (354)
T ss_pred             HHHHHHHH
Confidence            87777643

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.20  E-value=0.0054  Score=61.96  Aligned_cols=105  Identities=14%  Similarity=-0.042  Sum_probs=75.6

Q ss_pred             HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHH
Q 017823          201 RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILV  280 (365)
Q Consensus       201 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (365)
                      ++.++..++.. ...+++.++.+++.+.++++.||++-.+.+....+...+..++-...             .+.+..++
T Consensus        74 edl~~~~~~l~-~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ia  139 (495)
T KOG2533|consen   74 EDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIA  139 (495)
T ss_pred             cccchhhhhhh-hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHH
Confidence            45567777777 88999999999999999999999995444443333332222222222             34556677


Q ss_pred             HHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          281 LICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .-++.+..-+.+|++... +.+.-+.+++|++-+|+.++.
T Consensus       140 lr~llGl~es~~wP~~~~-~lg~wy~~~e~g~r~~~~~a~  178 (495)
T KOG2533|consen  140 LRFLLGLFESGGWPGVVA-ILGNWYGKSERGLRMGIWYAS  178 (495)
T ss_pred             HHHHHHHHhcccchHHHH-HHHhhcChhhhhhhHHHHHHh
Confidence            777777887878877754 458999999999999998866

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.17  E-value=0.0011  Score=49.40  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=41.3

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTA   55 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~   55 (365)
                      +.|+|+.++|.+.++..+...++++++|.++||++|++.++.....
T Consensus        29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            4788899999999999999999999999999999998887665544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.0046  Score=61.59  Aligned_cols=118  Identities=14%  Similarity=0.128  Sum_probs=89.1

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhcchhhhhhh
Q 017823           12 KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF--NIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        12 ~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~--~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      +.+..+..........+..++.++...+++|+|+|+++..+..+..++.++.-+.+  +.+..++..++.+++.+...+ 
T Consensus       268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~-  346 (467)
T COG2211         268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP-  346 (467)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc-
Confidence            34455666777777788888899999999999999999999999999999988875  788888999999999999988 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCC------CCC-cchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP------PKN-RGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~~~-r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                                ...++++|..+      .++ -|...+......=+|..++..+.++..
T Consensus       347 --------------------------l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         347 --------------------------LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             --------------------------ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      55555554432      222 356666666666666666665554443

>PRK11462 putative transporter; Provisional

Probab=97.09  E-value=0.0042  Score=62.26  Aligned_cols=114  Identities=12%  Similarity=0.019  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhcchhhhhhhhhhh
Q 017823           16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF--NIYMLIFGRVLLGVGIGFANQVSVWL   93 (365)
Q Consensus        16 ~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~--~~~~~~~~r~l~G~~~g~~~~~~~~~   93 (365)
                      ...+.+...+.++..++.+++++++||+|+|+.+..+..+.++..++..+.+  +.+.+.+.-++.|++.+...+     
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~-----  337 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTP-----  337 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH-----
Confidence            3455677788888899999999999999999987755554444333333322  233344455666776665555     


Q ss_pred             hhhcccccchhhhhHHHhhcccccceeecccCC-----CCCc--chhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           94 FYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-----PKNR--GAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~~~r--~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                            ....++.|..+     ..+|  |...+......-+|..+++.+++.+.
T Consensus       338 ----------------------l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        338 ----------------------IQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             ----------------------HHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  33334444433     1222  44455556667777777777666554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.05  E-value=0.0039  Score=59.68  Aligned_cols=129  Identities=15%  Similarity=0.048  Sum_probs=101.8

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      |-|+|.++.|...+...+.....++....+++|. .+|+..+.......++.....+.+.-..++- -++.|+|.|..++
T Consensus       237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~  315 (395)
T COG2807         237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFP  315 (395)
T ss_pred             HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHH
Confidence            5688899999999999999999999999999965 5677777788888888877777755433333 4899999999999


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCC-CCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP-PKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                                                 .+...+.+..+ +++-++.++..|....+=...||.+.+.+.|..+  +|+.+
T Consensus       316 ---------------------------laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~  366 (395)
T COG2807         316 ---------------------------LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAP  366 (395)
T ss_pred             ---------------------------HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHH
Confidence                                       77777766554 4556778888888777777889999999987765  56655


Q ss_pred             H
Q 017823          168 L  168 (365)
Q Consensus       168 f  168 (365)
                      .
T Consensus       367 ~  367 (395)
T COG2807         367 L  367 (395)
T ss_pred             H
Confidence            4

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.05  E-value=0.065  Score=52.54  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823           18 LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus        18 ~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      .+.+.-+-.+...+..+.+.+..+|...+.=+..+..+..++.++.++++|.+.-+++-++.+++.|....
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~  131 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEV  131 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHH
Confidence            34455555566777777888889988755555667778888999999999999999999999998887776

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.98  E-value=0.18  Score=50.72  Aligned_cols=137  Identities=13%  Similarity=0.136  Sum_probs=81.7

Q ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--hhHHHH----HHHHHHhhcch---h
Q 017823           15 SQLLTTFTSSLYIAGLIA-SLFASSVTRAFGRKASILVRSTAFLAGSALRGAA--FNIYML----IFGRVLLGVGI---G   84 (365)
Q Consensus        15 ~~~~~~~~s~~~i~~~i~-~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a--~~~~~~----~~~r~l~G~~~---g   84 (365)
                      ...+.++-+...+..++. .++.+++++|++|++.+-.....+...-.+.++.  ++...+    ..-....+...   +
T Consensus        42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~  121 (472)
T TIGR00769        42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG  121 (472)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence            467888888888877777 8899999999999999987777776666665554  111000    00000111100   0


Q ss_pred             hhhhhhhhhhhhcc-cccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           85 FANQVSVWLFYFSQ-TCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      .......|..+.-. .+++-+++-+-+     ..-.++.|..++++-.|..+.+..+.++|.++++.+...+.
T Consensus       122 ~i~~~~~W~~~~FYv~~elw~~~vvS~-----lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       122 FIAILRIWSFALFYVMAELWGSVVLSL-----LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00011112111000 011112221111     22345689999999999999999999999999998877765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.97  E-value=0.03  Score=47.66  Aligned_cols=120  Identities=16%  Similarity=0.118  Sum_probs=82.8

Q ss_pred             hcccccchhhcHHHHHHHcCC------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHH
Q 017823          185 HVTRINVISFYAPVLFRTIKL------SESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGS  258 (365)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~  258 (365)
                      .++++.........++++.+-      ++..-. ....+......+++++...+.+++|.|+.+.++.+...+-......
T Consensus         8 ~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~-~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~   86 (156)
T PF05978_consen    8 LFTAFQTQSFIQESVIHSVHERNPSSISAGLGY-YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY   86 (156)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhcCcccccccccH-HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            344445554455555544332      233333 5667777778888899999999999999999998887765555433


Q ss_pred             HHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          259 IMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                                    +..+..+....+.+++.+..|.... .+..+..+++.|++-.++...+
T Consensus        87 --------------~~~~~l~~~s~l~G~~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i  133 (156)
T PF05978_consen   87 --------------PNSYTLYPASALLGFGAALLWTAQG-TYLTSYSTEETIGRNTGIFWAI  133 (156)
T ss_pred             --------------hhHHHHHHHHHHHhhhhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHH
Confidence                          2245566666677788777777764 4557888899999988887777

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.95  E-value=0.0052  Score=61.55  Aligned_cols=123  Identities=14%  Similarity=0.142  Sum_probs=107.3

Q ss_pred             ccCccccCCchHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchh
Q 017823            6 NISNYSKFDSQLLTTFTSSLYIAGLIASLFAS-SVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         6 ~~~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g-~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g   84 (365)
                      -++..+++++.+.+.+.+...+...+++++.. .+...+|-|+.+..|+..-.+.....+++++.|++....++.++. +
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~  345 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G  345 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence            35667899999999999999999999998777 788889999999999999999999999999999999998887765 5


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      ...+                           ...+.++.+.+++++|++.++....-++...+++.+-..+.
T Consensus       346 ~~~p---------------------------a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  346 IVFP---------------------------AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             chhH---------------------------HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            6666                           67888899999999999999999999999988888755543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.82  E-value=0.02  Score=55.56  Aligned_cols=71  Identities=14%  Similarity=0.048  Sum_probs=62.5

Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHH
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~  259 (365)
                      .........|.+.+.++.+..++. ........+..+.++..+++.+|+|+|+-++.+..++++++.++.-.
T Consensus        28 ~~~l~diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA   98 (422)
T COG0738          28 ITCLNDILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA   98 (422)
T ss_pred             HhhcchhhHHHHHHHhCccHHHHH-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence            344555678888899999999999 88888889999999999999999999999999999999999888654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.79  E-value=0.0063  Score=60.83  Aligned_cols=111  Identities=12%  Similarity=0.043  Sum_probs=77.3

Q ss_pred             HHHHH--cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCc-chHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhh
Q 017823          198 VLFRT--IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGR-KVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGY  274 (365)
Q Consensus       198 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  274 (365)
                      .|+++  .+-+.+..+ +......++..++.++.++...|.+. |+.++.+++.+.++.++.....+.        ++..
T Consensus        59 pYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~--------~~~~  129 (488)
T KOG2325|consen   59 PYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV--------PNGV  129 (488)
T ss_pred             hhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc--------ccch
Confidence            44555  566667777 88888999999999999999999986 888889999999999988655322        3335


Q ss_pred             HHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHH
Q 017823          275 AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVA  319 (365)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  319 (365)
                      .++++++-++.+++.  +...+.-.+++...-.++|.++++....
T Consensus       130 ~y~mL~~R~l~Gvg~--~n~a~lR~Y~a~~s~~~dR~rA~a~~~~  172 (488)
T KOG2325|consen  130 KYLMLVARILTGVGV--GNFAVLRAYIADASTVEDRPRAFAATSG  172 (488)
T ss_pred             HHHHHHHHHHcCcCc--ccHHHHHHHHHhccCccchHHHHHHhhh
Confidence            666666666655543  2333445566665555566666665555

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.68  E-value=0.011  Score=58.91  Aligned_cols=125  Identities=14%  Similarity=0.224  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHhcccccchhhcHHHHHHHcC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh-CcchHHHHh
Q 017823          171 RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIK----LSESTSLLMSAIVTGSLGTISTSLSMILADRL-GRKVLFLVG  245 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~l~~~  245 (365)
                      .|.......+-+.-.++.+.......-++..+.+    ++++++. .....+....-...+++|+++||+ |+|+.+..+
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~-~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG   98 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHAT-GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG   98 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            4455555666666555444443333333334555    9999988 788888888888999999999995 999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChh
Q 017823          246 GIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLE  308 (365)
Q Consensus       246 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  308 (365)
                      .+++.++.++++...          ... .....+.+.+...+.+ ..-|-...+..|++|++
T Consensus        99 ail~~iGh~~L~~~~----------~~~-~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~  149 (498)
T COG3104          99 AILMAIGHLVLAISS----------VSG-PGGLYIGLALIIVGTG-LFKPNISSLLGELYPKD  149 (498)
T ss_pred             HHHHHHHHHHHhccc----------ccc-ccHHHHHHHHHHhccc-cccccHHHHHHHhcCCC
Confidence            999999999988751          001 1122222332234433 33444455668888765

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.54  E-value=0.024  Score=54.05  Aligned_cols=250  Identities=9%  Similarity=0.034  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhh
Q 017823           27 IAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNF  106 (365)
Q Consensus        27 i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~  106 (365)
                      -.+.+.-++.=.+.|..-.|++++.-.......-.+..+.++.+.+=+..+..|...+...                   
T Consensus        53 YSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-------------------  113 (433)
T KOG3810|consen   53 YSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-------------------  113 (433)
T ss_pred             HHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-------------------
Confidence            3455566667778998888999888777777777788889999999999999998876554                   


Q ss_pred             hHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchH---------------------
Q 017823          107 QLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWR---------------------  165 (365)
Q Consensus       107 ~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr---------------------  165 (365)
                               ..++|+-+..+|+++.++.+......-.|...|..++-.+.+... ..+.                     
T Consensus       114 ---------AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP  183 (433)
T KOG3810|consen  114 ---------AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLP  183 (433)
T ss_pred             ---------hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCC
Confidence                     478889999999999999999888888888888877766654321 1110                     


Q ss_pred             ----HHH---------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHH
Q 017823          166 ----ISL---------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRT  202 (365)
Q Consensus       166 ----~~f---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (365)
                          ..+                                       .++++.+.-..++.....+++.-...|...+-++
T Consensus       184 ~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~  263 (433)
T KOG3810|consen  184 RVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKE  263 (433)
T ss_pred             CCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHh
Confidence                000                                       2333444445555555566777777777777766


Q ss_pred             cCCCcchh--hHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHH--HhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHH
Q 017823          203 IKLSESTS--LLMSAIVTGSLGTISTSLSMILADRLGRKVLFL--VGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLI  278 (365)
Q Consensus       203 ~g~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (365)
                      .. ++...  .+..=.+..+.++++.+..|++--.+.|..-+.  ++....+.....+..             ....|..
T Consensus       264 ~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~-------------t~~Iw~~  329 (433)
T KOG3810|consen  264 VA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ-------------TQHIWVC  329 (433)
T ss_pred             hC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc-------------ccceehh
Confidence            54 22211  113344556667777888888865555553322  232222222222211             1335666


Q ss_pred             HHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          279 LVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+...++...+....+.....+ ++....|.-|...|+...+
T Consensus       330 Ya~yvlfr~~y~l~itiA~~~i-A~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  330 YAGYVLFRVIYQLTITIATFQI-ARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             hhhHHHHHhhHhhhhhHHHHHH-HHhhhhhhheeeeehHHHH
Confidence            6667777666665544443333 5556666667666665554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.90  E-value=0.2  Score=49.46  Aligned_cols=140  Identities=14%  Similarity=0.077  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHHHhcccccchhhcHHHH--H-HHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhH
Q 017823          170 YRLQFVMAILIPFFQHVTRINVISFYAPVL--F-RTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGG  246 (365)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~  246 (365)
                      ++||++..+...+.. ++.......|.|.-  . +-+| +.+.+. +...++.+..++..+.++|+.||+|-|....++.
T Consensus        40 y~rRW~vLl~~slL~-~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~-wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   40 YPRRWVVLLAFSLLN-FSNGMQWIQYAPINNYVNSFYG-SSSAAD-WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             chhHhHHHHHHHHHH-hcCcchheeehhHHHHHHHHhc-chHHHH-HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            455555554444433 44434444455442  2 2345 566666 8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCchhhHH--HHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          247 IQMLVSRVMIGSIMADQIGDHGGFSIGYAY--LILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       247 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.+++..+=....      .+..+ +..+  .....-.+....... .-.++.-+..--+|+++|+++..+....
T Consensus       117 ~ln~iGa~Ir~iss------~p~v~-~~f~~~l~~~Gq~iaa~Aq~F-im~lPskiA~~WF~~~qra~A~~~~v~~  184 (480)
T KOG2563|consen  117 VLNGIGAWIRLISS------LPFVP-PLFRRPLTHTGQSIAAAAQPF-ILGLPSKIAAVWFPPDQRAIATVLGVMG  184 (480)
T ss_pred             HHHHHHHHHhhhcc------Ccccc-ccchhhhhHHhHHHHHHhhhH-hhccccHHHHhhCCcchhhhhhhHHHhc
Confidence            99888876655442      11111 1122  222222222111111 1112222334468999999988877666

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.30  E-value=0.11  Score=39.38  Aligned_cols=66  Identities=15%  Similarity=0.008  Sum_probs=58.6

Q ss_pred             hhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHH
Q 017823          193 SFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       193 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~  259 (365)
                      ....|...++.++|.++.+ ++.+...++..+|.+...++.++.++++.+..+.+...+....+++.
T Consensus        12 TplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888899999999999 99999999999999999999999888888999988888888888775

Note that many members are hypothetical proteins.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.85  E-value=0.76  Score=45.28  Aligned_cols=131  Identities=11%  Similarity=-0.008  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHhcccccchhhcHHHHH-HH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHH
Q 017823          172 LQFVMAILIPFFQHVTRINVISFYAPVLF-RT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQM  249 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~  249 (365)
                      +.....+...++..+-   ..-.|...|+ +. .|+++++..--+.-+-.-..++.-++...+.|.++-|++++++.+..
T Consensus         5 ~~~~llc~~gf~~~fr---PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~   81 (412)
T PF01770_consen    5 KITLLLCLFGFFKEFR---PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY   81 (412)
T ss_pred             HHHHHHHHHHHHHhcC---CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4445555555555442   3333444444 43 78887776512233333445566677788899999999999988887


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          250 LVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       250 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+...++.+.             ......-+.-+.++...+.-.  ..+.++-...|+++--++.+.+.+.
T Consensus        82 i~t~~lll~~-------------~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa  137 (412)
T PF01770_consen   82 IITWLLLLFG-------------TSVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAA  137 (412)
T ss_pred             HHHHHHHHHH-------------CcHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHH
Confidence            7777776654             223344444555554443322  2223333445777666666666655

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.81  E-value=0.0082  Score=61.43  Aligned_cols=134  Identities=10%  Similarity=-0.095  Sum_probs=1.3

Q ss_pred             cccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcC
Q 017823          186 VTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIG  265 (365)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~  265 (365)
                      .........-.+.+-++++++.++++ .+.+..-++..+..++..+..+|-.|-+.+-.+.++++++.+++.........
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G-~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSG-LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            33333334445566688999999999 99999999999999999999999877788888999999999888875433221


Q ss_pred             CCC---------------------------------CCchhhHHHHHHHHHHHHHhhccccc---cccccccccCCChhh
Q 017823          266 DHG---------------------------------GFSIGYAYLILVLICVYKAGFAFSWG---PLRWLVPSENFPLEI  309 (365)
Q Consensus       266 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~p~~~  309 (365)
                      ...                                 .............+++..+..+++-.   ++...++-|.++++.
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~  174 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN  174 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence            100                                 00011122223333333344444433   456677889999998


Q ss_pred             hhHHHHHHHHH
Q 017823          310 ISAGQIITVAA  320 (365)
Q Consensus       310 r~~~~~~~~~~  320 (365)
                      .+...|+..++
T Consensus       175 splYiGi~~~~  185 (539)
T PF03137_consen  175 SPLYIGILYAM  185 (539)
T ss_dssp             -----------
T ss_pred             CccchhhhhHH
Confidence            88888888777

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.91  E-value=0.067  Score=51.94  Aligned_cols=92  Identities=21%  Similarity=0.301  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---h------HHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhccccc
Q 017823           47 ASILVRSTAFLAGSALRGAAF---N------IYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSV  117 (365)
Q Consensus        47 ~~l~~~~~~~~~~~~~~~~a~---~------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (365)
                      |+++++.++..+|.++..++.   +      .+.+.++-.+.++|.|+.-+                           ..
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~---------------------------ni   54 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKP---------------------------NI   54 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHH---------------------------HH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccc---------------------------cH
Confidence            577888888999988855442   2      36789999999999999999                           88


Q ss_pred             ceeecccCCCC---CcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823          118 PLYLSEMAPPK---NRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus       118 ~~~~~e~~~~~---~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                      ..+..|-++++   +|.+...++..+.++|.+++..+..++.   ++.||.+.|
T Consensus        55 ~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~---~~~~~~~~f  105 (372)
T PF00854_consen   55 SPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQ---QNYGWFLGF  105 (372)
T ss_dssp             HHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HCS-HHHHH
T ss_pred             HHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhc---cccchhhhh
Confidence            88888888765   3556777889999999999999988888   556798888

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.45  E-value=0.32  Score=47.78  Aligned_cols=111  Identities=14%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-----HHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhh
Q 017823           15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTA-----FLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQV   89 (365)
Q Consensus        15 ~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~-----~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~   89 (365)
                      ..+..+....|.+|-.++.--...+  |+  |+..+...+-     +.+.....-+.+|.|..++.-+..|+..|..+. 
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV-  354 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV-  354 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH-
Confidence            5677777888888777764332221  33  3333332222     222222333458889998999999999999998 


Q ss_pred             hhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           90 SVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                                                .....+.|..|+++|...++....+.++|.+++.+++..+.
T Consensus       355 --------------------------NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  355 --------------------------NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             --------------------------HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                                      77777888889999999999999999999999999988765

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=92.71  E-value=2.2  Score=44.14  Aligned_cols=129  Identities=15%  Similarity=0.083  Sum_probs=93.2

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhh--------------------
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVRSTAFLAGSALRGAAFN--------------------   68 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~a~~--------------------   68 (365)
                      +++.+.....-..+.+.-......+.++.++|.| ||-+++.++.++..+|..+..++..                    
T Consensus        67 ~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~  146 (571)
T KOG1237|consen   67 ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCES  146 (571)
T ss_pred             HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccC
Confidence            3444455566666666666667778999999975 8999999999998888665544311                    


Q ss_pred             -----HHHHHHHHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCC----CCC--cchhhhHH
Q 017823           69 -----IYMLIFGRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP----PKN--RGAFNIGF  137 (365)
Q Consensus        69 -----~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~~--r~~~~~~~  137 (365)
                           ...+..+..+..+|.|+.-+                           ....+-+|-++    +++  +.....++
T Consensus       147 ~s~~q~~~~~~~l~lia~G~gg~r~---------------------------~~~~fGadQfd~~~~~~~~~~~~fFnW~  199 (571)
T KOG1237|consen  147 PSKLQLAVLYGALYLIALGAGGIRP---------------------------CLLAFGADQFDELDPVEVKGIPSFFNWF  199 (571)
T ss_pred             cchHHHHHHHHHHHHheeccCCCCC---------------------------cchhhcccccCccCcchhhCcccchhHH
Confidence                 13566677778889999888                           66666666665    222  34678888


Q ss_pred             HHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823          138 QVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus       138 ~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                      .....+|.+++..+..+.+   ++.+|.+-|
T Consensus       200 yf~~~~g~l~a~t~~vyiq---~~~~w~lgf  227 (571)
T KOG1237|consen  200 YFSQNGGALLAQTVLVYIQ---DNVGWKLGF  227 (571)
T ss_pred             HHHHHHHHHHHHHHHHhhh---hcccceeec
Confidence            9999999999999888887   445677776

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=92.63  E-value=1.3  Score=43.97  Aligned_cols=118  Identities=18%  Similarity=0.093  Sum_probs=83.5

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---Hhh-------hHHHHHHHHHHhhc
Q 017823           12 KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG---AAF-------NIYMLIFGRVLLGV   81 (365)
Q Consensus        12 ~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~---~a~-------~~~~~~~~r~l~G~   81 (365)
                      |+++..+|..-+...+....+.....++.+|+|..|.=..+...-.....++.   +++       +...++.+-++.-+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999988876666554332222222   221       22333333333333


Q ss_pred             chhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823           82 GIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      |.=+.-.                           ...-++-|..|+++||..++......++--++...++..+.
T Consensus       369 GLW~fDL---------------------------~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  369 GLWSFDL---------------------------AVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHhhhH---------------------------HHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3323333                           45566789999999999999999999988888888776554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=92.56  E-value=1.2  Score=39.79  Aligned_cols=116  Identities=21%  Similarity=0.155  Sum_probs=68.9

Q ss_pred             chhhcHHHHHHHcCCCc--chhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          191 VISFYAPVLFRTIKLSE--STSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       191 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      ......+.+..+.+.+.  .... .......+...++.++.|.+.||.|||+.+..+......+.+......        
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------   90 (338)
T COG0477          20 LLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------   90 (338)
T ss_pred             hHHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------
Confidence            33345556666665554  3455 677788888888889999999999999777776655334433333321        


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCCh-hhhhHHHHHHHH
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPL-EIISAGQIITVA  319 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~  319 (365)
                         ....+...+.....+.+.+ ...+....+..|..|+ +.|+...+....
T Consensus        91 ---~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (338)
T COG0477          91 ---NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTL  138 (338)
T ss_pred             ---cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence               0112222333332333332 3344556667888887 667776666665

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=92.42  E-value=1.5  Score=42.80  Aligned_cols=96  Identities=18%  Similarity=0.090  Sum_probs=56.1

Q ss_pred             HHHHHHHHh-----hhhhhHHHHH-HHHHHHHHHHHHHHh-----------hhHHHHHHHHHHhhcchhhhhhhhhhhhh
Q 017823           33 SLFASSVTR-----AFGRKASILV-RSTAFLAGSALRGAA-----------FNIYMLIFGRVLLGVGIGFANQVSVWLFY   95 (365)
Q Consensus        33 ~~~~g~l~d-----r~Grk~~l~~-~~~~~~~~~~~~~~a-----------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~   95 (365)
                      -+.+.++.|     |+||||..++ +..+....+...+.-           ++...+...-++.-+..+.--.       
T Consensus        80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDI-------  152 (510)
T KOG3574|consen   80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDI-------  152 (510)
T ss_pred             HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhh-------
Confidence            357778888     9999998755 444443333333322           1222222222333333343333       


Q ss_pred             hcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 017823           96 FSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGT  155 (365)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  155 (365)
                                          +...+...+..+++-|-++....++...|..++..+-..+
T Consensus       153 --------------------AVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL  192 (510)
T KOG3574|consen  153 --------------------AVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLAL  192 (510)
T ss_pred             --------------------hhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEe
Confidence                                4455556677788889888888888888887776654443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.26  E-value=14  Score=37.40  Aligned_cols=138  Identities=12%  Similarity=0.130  Sum_probs=76.2

Q ss_pred             chHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh---------hhH-HHHHHHHHHhhcch
Q 017823           15 SQLLTTFTSSLYI-AGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA---------FNI-YMLIFGRVLLGVGI   83 (365)
Q Consensus        15 ~~~~~~~~s~~~i-~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a---------~~~-~~~~~~r~l~G~~~   83 (365)
                      +..+..+-....+ ...+......+++|+++|++++-.....+...-.+.++.         ++. +.-...+...|+. 
T Consensus        57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~-  135 (491)
T PF03219_consen   57 AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK-  135 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH-
Confidence            4455555554444 334556778999999999999877666666555555543         111 1111111111111 


Q ss_pred             hhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           84 GFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        84 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                      +.......|.+..-..  ....+.-|+++.  .--.+..|..+.++-.|..+.+..+.++|.++++.+...+.+
T Consensus       136 ~~i~~~~~Wt~slfYv--~aElwgsvvlSl--LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYV--MAELWGSVVLSL--LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222332211000  001111222221  113446788888999999999999999999999988887776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.88  E-value=0.59  Score=49.20  Aligned_cols=148  Identities=11%  Similarity=-0.050  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHH
Q 017823          172 LQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLV  251 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i  251 (365)
                      +.++..+....+.+......+..-.+.+-+.++++.++.+ .+....-++..+......+...|..|-+.+-.+.+++++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG-~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSG-LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcce-eEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            3444444444444333333333334445577899999998 888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCC------------CC---------------------CCc--hhhHHHHHHHHHHHHHhhcccc---
Q 017823          252 SRVMIGSIMADQIGD------------HG---------------------GFS--IGYAYLILVLICVYKAGFAFSW---  293 (365)
Q Consensus       252 ~~~~~~~~~~~~~~~------------~~---------------------~~~--~~~~~~~~~~~~~~~~~~~~~~---  293 (365)
                      +.++..+........            .+                     +..  ........+.+++..+..+++-   
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            999888763321110            00                     000  0111112222333333333333   


Q ss_pred             ccccccccccCCChhhhhHHHHHHHHH
Q 017823          294 GPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       294 ~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .++...++-|...+++-+...|+.+++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSM  281 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHH
Confidence            345566778888888888888888877

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.82  E-value=0.2  Score=49.66  Aligned_cols=146  Identities=14%  Similarity=0.124  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh----hCcchHHHHhH-
Q 017823          172 LQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADR----LGRKVLFLVGG-  246 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~l~~~~-  246 (365)
                      ++.+....+.+..++ +......|.|.+.++.|.+..... +......+.+.+.+++.|..+||    +||||.++... 
T Consensus        32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S-~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s  109 (498)
T KOG0637|consen   32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSS-IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS  109 (498)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCccccc-ccccccccccceecccccccccccccccccccchHHHhh
Confidence            344444455555555 445566688889999999999888 78888888999999999999996    68888776544 


Q ss_pred             HHHHHHHHHHHHHHhhhc--CCCCCCch--hhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhH-HHHHHHHH
Q 017823          247 IQMLVSRVMIGSIMADQI--GDHGGFSI--GYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISA-GQIITVAA  320 (365)
Q Consensus       247 ~~~~i~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~  320 (365)
                      ....+++.+++.....-.  .+.+..+.  ......++.+.+.-+..+...+|.-. +..++..++.+.+ +.+....+
T Consensus       110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra-~L~Dl~~~d~~~~~Ans~f~~f  187 (498)
T KOG0637|consen  110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRA-LLADLARGDAKKTRANSVFSFF  187 (498)
T ss_pred             HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHH-HHHHhccChhhhhccchhHHHH
Confidence            445555555555432211  12211111  11222233333444454556677643 4467776666666 66655555

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=91.25  E-value=3  Score=43.83  Aligned_cols=64  Identities=22%  Similarity=0.188  Sum_probs=50.0

Q ss_pred             cHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-hCcchHHHHhHHHHHHHHHHHHHH
Q 017823          195 YAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADR-LGRKVLFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       195 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~i~~~~~~~~  259 (365)
                      +..++.+..|++++.+. ..........-+..+++|+++|+ +||++.+..+.++..++..++.+.
T Consensus        10 LvlYl~~~lg~~~~~A~-~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926        10 LVLYFLNFLGFSESTST-VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             HHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            33344466888888887 77777777778888999999997 599999999988888888777653

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=90.95  E-value=20  Score=36.41  Aligned_cols=40  Identities=15%  Similarity=0.057  Sum_probs=28.3

Q ss_pred             cceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q 017823          117 VPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus       117 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  156 (365)
                      +..+...+..+++++.++.....+.+.|..++..+-..+.
T Consensus       139 VDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  139 VDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             eehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence            3344455667888998888888888888877776655544

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.66  E-value=6.1  Score=39.63  Aligned_cols=98  Identities=16%  Similarity=0.079  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccc
Q 017823          213 MSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFS  292 (365)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (365)
                      ....+.....+++.++++.+.|+++.|..+.++.....+..+.+...              +.+.....-.+.+++.+..
T Consensus        54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~--------------N~y~~yfssallG~Gaall  119 (461)
T KOG3098|consen   54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP--------------NSYYLYFSSALLGFGAALL  119 (461)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc--------------chHHHHHHHHHhhhhHHhe
Confidence            55777788889999999999999999999999988887777776653              2566677777778888877


Q ss_pred             cccccccccccCCChhhhhHHHHHHHHHHHHHH
Q 017823          293 WGPLRWLVPSENFPLEIISAGQIITVAAGVFFF  325 (365)
Q Consensus       293 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~f~~  325 (365)
                      |..- -.+.+|..++|.+.+..++..++..+..
T Consensus       120 w~Gq-G~ylt~~st~~tie~Nisi~Wai~~~~l  151 (461)
T KOG3098|consen  120 WTGQ-GGYLTSNSTRETIERNISIFWAIGQSSL  151 (461)
T ss_pred             eccc-ceehhhcCChhhHHHHHHHHHHHHHHHH
Confidence            7765 4566899999999999999999844443

>PRK03612 spermidine synthase; Provisional

Probab=87.45  E-value=5.8  Score=40.56  Aligned_cols=37  Identities=11%  Similarity=0.015  Sum_probs=29.4

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKA   47 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~   47 (365)
                      +|-+....+.+.+++..|.++|+..++++.++.-|+.
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~   81 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF   81 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            4556788899999999999999999998875544433

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=87.33  E-value=14  Score=35.54  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhh
Q 017823           25 LYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus        25 ~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      .++.....+.+.+.+.+++|-|+++.++.......- ..-+=+.+..++-.-...|++.+..+.
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~  129 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWA  129 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccc
Confidence            345556677777799999999999988887776532 222336788999999999999999998

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=83.75  E-value=1.7  Score=43.17  Aligned_cols=119  Identities=12%  Similarity=0.044  Sum_probs=85.9

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhhc
Q 017823           12 KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAA----------FNIYMLIFGRVLLGV   81 (365)
Q Consensus        12 ~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a----------~~~~~~~~~r~l~G~   81 (365)
                      ++|+...+.+..+..++..++........-+..-|+++..+.++..+..+....-          ++.+..+.--++..+
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            4889999999988899999999988888888888888887777766655532211          111222222333333


Q ss_pred             chhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 017823           82 GIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQK  157 (365)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  157 (365)
                      ..+..+-                           ....+++|..|+..-|...++.....++|..++..++..+.+
T Consensus       331 ~~~i~~m---------------------------P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~  379 (433)
T PF03092_consen  331 IGMIAFM---------------------------PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME  379 (433)
T ss_pred             HHHHHHH---------------------------HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333                           555668999999999999999999999999998888887764

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.87  E-value=23  Score=35.81  Aligned_cols=112  Identities=8%  Similarity=-0.020  Sum_probs=63.1

Q ss_pred             chhhHHHHHHHHHHHHHH-HHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCC-CCC---------Cchhh--
Q 017823          208 STSLLMSAIVTGSLGTIS-TSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGD-HGG---------FSIGY--  274 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~---------~~~~~--  274 (365)
                      +... ++-+...+...+. .++-+++++|++|++.+...........+++++..+-.... |++         .+.+.  
T Consensus        43 e~i~-fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~  121 (472)
T TIGR00769        43 EIIP-FLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG  121 (472)
T ss_pred             hhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence            3344 4444444444444 78889999999999999888877777777777764321111 111         00000  


Q ss_pred             ------HHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          275 ------AYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       275 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                            .|...+.............+-+-|..++|.+.+++-.+-.++....
T Consensus       122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~g  173 (472)
T TIGR00769       122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLG  173 (472)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence                  1111111111122222223336678889999998887777766665

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=82.69  E-value=26  Score=34.51  Aligned_cols=83  Identities=18%  Similarity=0.241  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-----hhCcchHHHHh
Q 017823          171 RLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILAD-----RLGRKVLFLVG  245 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~grr~~l~~~  245 (365)
                      ++.+...+.....+ ........ -.|.+++.-|.|.+..+ ......  --.--.++...+.|     |+||||..++-
T Consensus        30 ~~~illLl~LYllQ-GiP~GL~~-~iP~lL~ak~vSyt~~a-~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQ-GIPLGLIG-AIPLLLQAKGVSYTSQA-IFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hhhHHHHHHHHHHc-CCchhHhh-hhHHHhcCCCcchhhhh-hhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceeee
Confidence            44444444444444 54555555 78999987777665544 111111  11122456667777     99999987654


Q ss_pred             HHHHHHHHHHHHHH
Q 017823          246 GIQMLVSRVMIGSI  259 (365)
Q Consensus       246 ~~~~~i~~~~~~~~  259 (365)
                      + ...++..+..+.
T Consensus       105 ~-q~llG~~mllLs  117 (510)
T KOG3574|consen  105 C-QYLLGLFMLLLS  117 (510)
T ss_pred             h-HHHHHHHHHHHh
Confidence            2 333444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		7e-11

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 175 VMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVXXXXXXXXXXXXXXXAD 234
           V+ +++  FQ    INV+ +YAP +F+T+  S   +LL + IV                D
Sbjct: 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV-GVINLTFTVLAIMTVD 337
Query: 235 RLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWG 294
           + GRK L ++G + M +    +G+    Q       + G   L+ +L   Y A FA SWG
Sbjct: 338 KFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLF--YVAAFAMSWG 388
Query: 295 PLRWLVPSENFPLEIISAGQIITVAA 320
           P+ W++ SE FP  I      I VAA
Sbjct: 389 PVCWVLLSEIFPNAIRGKALAIAVAA 414
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.94
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2xut_A	524	Proton/peptide symporter family protein; transport	99.79
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.77
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.02
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.75
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.74
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.72
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.69
2xut_A	524	Proton/peptide symporter family protein; transport	98.64
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.61

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=6.5e-36  Score=296.76  Aligned_cols=308  Identities=27%  Similarity=0.457  Sum_probs=250.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH------------------HhhhHHHHHH
Q 017823           13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRG------------------AAFNIYMLIF   74 (365)
Q Consensus        13 ~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~------------------~a~~~~~~~~   74 (365)
                      .++++.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++++                  +++|++++++
T Consensus        52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~  131 (491)
T 4gc0_A           52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI  131 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence            3456789999999999999999999999999999999999999999999998                  4789999999


Q ss_pred             HHHHhhcchhhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 017823           75 GRVLLGVGIGFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYG  154 (365)
Q Consensus        75 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  154 (365)
                      +|+++|++.|...+                           ..+.+++|+.|+++|++..+..+.+...|.++++.++..
T Consensus       132 ~R~l~G~g~G~~~~---------------------------~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~  184 (491)
T 4gc0_A          132 YRIIGGIGVGLASM---------------------------LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF  184 (491)
T ss_dssp             HHHHHHHHHHHHHH---------------------------HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---------------------------HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence            99999999999999                           999999999999999999999999999999999998877


Q ss_pred             hcccc-----CCcchHHHH-------------------------------------------------------------
Q 017823          155 TQKIK-----VGWGWRISL-------------------------------------------------------------  168 (365)
Q Consensus       155 ~~~~~-----~~~gwr~~f-------------------------------------------------------------  168 (365)
                      .....     ..++||..+                                                             
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  264 (491)
T 4gc0_A          185 IARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGR  264 (491)
T ss_dssp             HHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhh
Confidence            65432     235677776                                                             


Q ss_pred             --------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcch
Q 017823          169 --------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKV  240 (365)
Q Consensus       169 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  240 (365)
                              ..+++.........++++.+.+....|.|.+.+..+.+..... ......++...++.++++++.||+|||+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~  343 (491)
T 4gc0_A          265 KTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKP  343 (491)
T ss_dssp             HHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHH
T ss_pred             hhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence                    0112345556666777778888888999999999888887777 7778888999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          241 LFLVGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       241 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+..+...+.++.+.++.....         ....+..++...++..+++.+++|+.+.+.+|++|++.|+++.|+.++.
T Consensus       344 ~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~  414 (491)
T 4gc0_A          344 LQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA  414 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence            9999988888888777665321         1223445555666667777888999999999999999999999998776


Q ss_pred             ----------------------------HHHHH-------HHHHHHhhcccCCCCChHHHHHHHccCCccee
Q 017823          321 ----------------------------GVFFF-------LTTFMHFFLPETKNVPIELMDKCWREHWFWRK  357 (365)
Q Consensus       321 ----------------------------~~f~~-------~~~~~~~~~~et~~~~~~~~~~~~~~~~~~~~  357 (365)
                                                  ..|++       ..++.++++||||+|++||+|+.++++.+++|
T Consensus       415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~  486 (491)
T 4gc0_A          415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ  486 (491)
T ss_dssp             HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence                                        01111       33456678999999999999998876655444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.94  E-value=1.2e-26  Score=226.81  Aligned_cols=268  Identities=14%  Similarity=0.021  Sum_probs=211.7

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHhhcchh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGA----AFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~----a~~~~~~~~~r~l~G~~~g   84 (365)
                      +++ .|..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.++    ++|++.++++|++.|++.+
T Consensus        56 ~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  134 (451)
T 1pw4_A           56 EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG  134 (451)
T ss_dssp             SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred             HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhh
Confidence            445 77999999999999999999999999999999999999999999999999999    9999999999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcc-
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWG-  163 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~g-  163 (365)
                      ...+                           ...+++.|++|+++|++++++.+.+..+|.++++.++..+.   +..+ 
T Consensus       135 ~~~~---------------------------~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~  184 (451)
T 1pw4_A          135 MGWP---------------------------PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM---AWFND  184 (451)
T ss_dssp             HTHH---------------------------HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH---HHTCC
T ss_pred             hccc---------------------------hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcc
Confidence            9999                           88999999999999999999999999999999999998765   3345 


Q ss_pred             hHHHH----------------------Hh--------------------------------H----HHHHHHHHHHHHHh
Q 017823          164 WRISL----------------------KY--------------------------------R----LQFVMAILIPFFQH  185 (365)
Q Consensus       164 wr~~f----------------------~~--------------------------------~----~~~~~~~~~~~~~~  185 (365)
                      ||+.|                      +.                                +    ++.++...+..+..
T Consensus       185 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (451)
T 1pw4_A          185 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV  264 (451)
T ss_dssp             STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHH
Confidence            88776                      00                                0    12233333333333


Q ss_pred             cccccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh--CcchHHHHhHHHHH-HHHHHHHHHHh
Q 017823          186 VTRINVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTISTSLSMILADRL--GRKVLFLVGGIQML-VSRVMIGSIMA  261 (365)
Q Consensus       186 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~l~~~~~~~~-i~~~~~~~~~~  261 (365)
                      .........+.|.++++ .|.++.+.+ .......++.+++.++.+++.||+  |||+.+..+..+.. ++.+.+...  
T Consensus       265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  341 (451)
T 1pw4_A          265 YLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--  341 (451)
T ss_dssp             HHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--
Confidence            44556677788888876 799999888 888999999999999999999999  99988877766555 443333221  


Q ss_pred             hhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          262 DQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                               +....+...+...+.+.+.... .+....+..|.+|++.|+++.|+.+..
T Consensus       342 ---------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (451)
T 1pw4_A          342 ---------PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLF  390 (451)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             ---------cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence                     1112334444444455544333 333456678999999999999988765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=4.4e-25  Score=215.13  Aligned_cols=267  Identities=12%  Similarity=0.077  Sum_probs=210.8

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHhhcchh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALR---GAAFNIYMLIFGRVLLGVGIG   84 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~a~~~~~~~~~r~l~G~~~g   84 (365)
                      .+++|.|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.   +++++++.++++|++.|++.+
T Consensus        53 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  132 (438)
T 3o7q_A           53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG  132 (438)
T ss_dssp             HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHH
Confidence            34567779999999999999999999999999999999999999999999999999   888999999999999999999


Q ss_pred             hhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhc-cccCC--
Q 017823           85 FANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQ-KIKVG--  161 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~~~--  161 (365)
                      ...+                           ....++.|++|+|+|++++++.+.+..+|..+++.++..+. +....  
T Consensus       133 ~~~~---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  185 (438)
T 3o7q_A          133 CLET---------------------------AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS  185 (438)
T ss_dssp             HHHH---------------------------HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred             Hhhh---------------------------hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            9999                           89999999999999999999999999999999999998887 43321  


Q ss_pred             --------------------cchHHHH-----------------------------------------HhHHHHHHHHHH
Q 017823          162 --------------------WGWRISL-----------------------------------------KYRLQFVMAILI  180 (365)
Q Consensus       162 --------------------~gwr~~f-----------------------------------------~~~~~~~~~~~~  180 (365)
                                          .+||+.+                                         ..+++.++....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (438)
T 3o7q_A          186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVL  265 (438)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHH
T ss_pred             ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHH
Confidence                                0188877                                         001122233333


Q ss_pred             HHHHhcccccchhhcHHHH-HHHc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHH
Q 017823          181 PFFQHVTRINVISFYAPVL-FRTI-KLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGS  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~  258 (365)
                      ..+...........+.|.+ +++. |.++.+.+ .......++.+++.++.++++||+|||+.+..+..+..++.+.+..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T 3o7q_A          266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF  344 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            3333334455666788888 7665 99999998 8888899999999999999999999999999888877777666554


Q ss_pred             HHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHH
Q 017823          259 IMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITV  318 (365)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  318 (365)
                      .             +..+ ..+...+.+++.+.. .|..+.+..|.+|++ |+++.++..
T Consensus       345 ~-------------~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~  388 (438)
T 3o7q_A          345 A-------------GGHV-GLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV  388 (438)
T ss_dssp             C-------------CHHH-HHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred             c-------------CCcH-HHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH
Confidence            3             1122 233334444555444 345566668999977 787777766

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.92  E-value=5e-24  Score=211.28  Aligned_cols=276  Identities=12%  Similarity=0.045  Sum_probs=203.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            9 NYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         9 ~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      +++|.|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++.++++|++.++++|++.|++.+...
T Consensus        47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence            4577789999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCC--cchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKN--RGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWR  165 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr  165 (365)
                      +                           ....++.|++|+++  |+.+.+..+.+.++|..+++.++..+.+   ..|||
T Consensus       127 ~---------------------------~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~g~~  176 (491)
T 4aps_A          127 P---------------------------NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE---AAGYH  176 (491)
T ss_dssp             H---------------------------HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCHH
T ss_pred             c---------------------------hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh---hhhHH
Confidence            9                           89999999999998  6778888999999999999999998873   35799


Q ss_pred             HHH------------------H-----------------hHHH-------------------------------------
Q 017823          166 ISL------------------K-----------------YRLQ-------------------------------------  173 (365)
Q Consensus       166 ~~f------------------~-----------------~~~~-------------------------------------  173 (365)
                      +.|                  +                 ..++                                     
T Consensus       177 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (491)
T 4aps_A          177 VAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIV  256 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHH
Confidence            988                  0                 0000                                     


Q ss_pred             -----------------------H----HHHHHHHHHHhcccccchhhcHHHHHHH-cCCCcchhhHHHHHHHHHHHHHH
Q 017823          174 -----------------------F----VMAILIPFFQHVTRINVISFYAPVLFRT-IKLSESTSLLMSAIVTGSLGTIS  225 (365)
Q Consensus       174 -----------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~  225 (365)
                                             .    ....................+.|.+.++ .+.+..... .......+...++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  335 (491)
T 4aps_A          257 AIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLY  335 (491)
T ss_dssp             HHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHH
Confidence                                   0    1111111222222334445566667654 566655566 6777888889999


Q ss_pred             HHHHHHHHhhhCcchHHH-----HhHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccc
Q 017823          226 TSLSMILADRLGRKVLFL-----VGGIQMLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLV  300 (365)
Q Consensus       226 ~~~~g~l~dr~grr~~l~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (365)
                      .++.+++.||++||+...     .+..+..++.+.+....... .+   ..+...+.......+.+.+... ..+..+.+
T Consensus       336 ~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~  410 (491)
T 4aps_A          336 TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEML-ISPVGLSV  410 (491)
T ss_dssp             HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHT-TTTHHHHH
T ss_pred             HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence            999999999999986544     55556666655554432111 00   0111233444445555555443 34455677


Q ss_pred             cccCCChhhhhHHHHHHHHH
Q 017823          301 PSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       301 ~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ..|.+|++.|+++.|+.+..
T Consensus       411 ~~~~~p~~~~g~~~g~~~~~  430 (491)
T 4aps_A          411 TTKLAPKAFNSQMMSMWFLS  430 (491)
T ss_dssp             HHHHTTTTCSSSSTHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHH
Confidence            89999999999999988777

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=2.1e-24  Score=206.67  Aligned_cols=269  Identities=15%  Similarity=0.157  Sum_probs=203.9

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhh
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFAN   87 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~   87 (365)
                      .+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++.++++|++.++++|++.|++.+...
T Consensus        27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~  106 (375)
T 2gfp_A           27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGG  106 (375)
T ss_dssp             HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence            35677789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchHHH
Q 017823           88 QVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWRIS  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~  167 (365)
                      +                           ....++.|+.|+|+|+++++..+.+..+|..+++.++..+.   +..+||..
T Consensus       107 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~  156 (375)
T 2gfp_A          107 V---------------------------MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD---TMWNWRAC  156 (375)
T ss_dssp             H---------------------------HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS---CHHHHHHH
T ss_pred             h---------------------------hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HhccHHHH
Confidence            9                           88999999999999999999999999999999999999887   34579988


Q ss_pred             H-------------------------------------HhHHHHHHHHHHHHHHhcccccchhhcHHHHHHH-cCCCcch
Q 017823          168 L-------------------------------------KYRLQFVMAILIPFFQHVTRINVISFYAPVLFRT-IKLSEST  209 (365)
Q Consensus       168 f-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~  209 (365)
                      +                                     ..+++.........+...........+.|.++++ .|.++.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  236 (375)
T 2gfp_A          157 YLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT  236 (375)
T ss_dssp             HHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            8                                     0122223333333333334455556667777655 7888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHH-HHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHh
Q 017823          210 SLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQ-MLVSRVMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAG  288 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (365)
                      .+ .......++.+++..+.+++.||.+++  ...+... ...+...+.....         ..++.+...+...+.+++
T Consensus       237 ~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~  304 (375)
T 2gfp_A          237 VS-ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFG  304 (375)
T ss_dssp             HH-HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHH
Confidence            88 888888899999999999999998873  2222222 2222221111100         012234444455555565


Q ss_pred             hccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          289 FAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       289 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      .+.. .+....+..|..| ++|+++.|+.+..
T Consensus       305 ~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~  334 (375)
T 2gfp_A          305 AGML-FPLATSGAMEPFP-FLAGTAGALVGGL  334 (375)
T ss_dssp             HHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred             HHHh-hHHHHHHHHHhCC-cccchHHHHHHHH
Confidence            5544 3444666789998 8999999999877

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.79  E-value=1.5e-19  Score=180.56  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=118.0

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhcchhhhhh
Q 017823           11 SKFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVRSTAFLAGSALRGAAF-NIYMLIFGRVLLGVGIGFANQ   88 (365)
Q Consensus        11 ~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~a~-~~~~~~~~r~l~G~~~g~~~~   88 (365)
                      +++|+.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.++.++++ +++.++++|++.|++.+...+
T Consensus        49 ~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  128 (524)
T 2xut_A           49 EELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKP  128 (524)
T ss_dssp             SSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence            338899999999999999999999999999999 999999999999999999999998 999999999999999999999


Q ss_pred             hhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH---HHHHHHHHHHHHHHHhhhhccccCCcchH
Q 017823           89 VSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG---FQVCVATAVLSANLLNYGTQKIKVGWGWR  165 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~i~~~~~~~~~~~~~~~gwr  165 (365)
                                                 ...+++.|++|+++|++..+.   .+.+.++|..+++.+++.+.+   ..+||
T Consensus       129 ---------------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~  178 (524)
T 2xut_A          129 ---------------------------LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---NFGAA  178 (524)
T ss_dssp             ---------------------------HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---TSCHH
T ss_pred             ---------------------------hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHH
Confidence                                       889999999999999877666   888999999999999888873   35799


Q ss_pred             HHH
Q 017823          166 ISL  168 (365)
Q Consensus       166 ~~f  168 (365)
                      ..|
T Consensus       179 ~~f  181 (524)
T 2xut_A          179 VAF  181 (524)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.77  E-value=6.3e-19  Score=171.95  Aligned_cols=264  Identities=9%  Similarity=0.029  Sum_probs=160.4

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHhhhH-HHHHHHHHHhhcch
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGS---ALRGAAFNI-YMLIFGRVLLGVGI   83 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~---~~~~~a~~~-~~~~~~r~l~G~~~   83 (365)
                      ++++|+|+.+.|++.+.+.++..++++++|+++||+|||+++..+..+..++.   ....+++.. ..+..++.+.|++.
T Consensus        35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (417)
T 2cfq_A           35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL  114 (417)
T ss_dssp             HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577889999999999999999999999999999999999998887765432   112233222 12445677777766


Q ss_pred             hhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCC--CCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC
Q 017823           84 GFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPP--KNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG  161 (365)
Q Consensus        84 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  161 (365)
                      +...+                           .......++.++  ++|+...+..+.+..+|..+++.++..+.+    
T Consensus       115 g~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----  163 (417)
T 2cfq_A          115 GFCFN---------------------------AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----  163 (417)
T ss_dssp             THHHH---------------------------TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----
T ss_pred             HHHHh---------------------------hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            66554                           333333334332  355666677666677777777777766542    


Q ss_pred             cchHHHH--------------------H-h------------------------HHHHHHHHHHHHHHhcccccchhhcH
Q 017823          162 WGWRISL--------------------K-Y------------------------RLQFVMAILIPFFQHVTRINVISFYA  196 (365)
Q Consensus       162 ~gwr~~f--------------------~-~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (365)
                      .+||..|                    + .                        +++..+......+.....+.....+.
T Consensus       164 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (417)
T 2cfq_A          164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF  243 (417)
T ss_dssp             HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            2456555                    0 0                        01111122221111111222233345


Q ss_pred             HHHHHHc-CC---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCch
Q 017823          197 PVLFRTI-KL---SESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFSI  272 (365)
Q Consensus       197 ~~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  272 (365)
                      |.++.+. +.   +....+ ....+..+..+++.++.++++||+|||+.+..+..+..+..+.+...             
T Consensus       244 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------------  309 (417)
T 2cfq_A          244 ANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------------  309 (417)
T ss_dssp             HHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence            6666442 21   233334 55667777888999999999999999999887777666654444321             


Q ss_pred             hhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHH
Q 017823          273 GYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIIT  317 (365)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  317 (365)
                      +..+..++...+...+... ..+..+.+.+|.+|++.|++++++.
T Consensus       310 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~  353 (417)
T 2cfq_A          310 TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            1122233333333333222 2223356779999999999998875

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.02  E-value=1.2e-09  Score=105.86  Aligned_cols=135  Identities=12%  Similarity=0.040  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhcccccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHH
Q 017823          174 FVMAILIPFFQHVTRINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSR  253 (365)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~  253 (365)
                      .+.......+...........+.|.+.++. .++.+.+ ...+...++..++.++.|+++||+|||+.+..+.++..++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~  106 (451)
T 1pw4_A           29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  106 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            333333333433444455666778888888 8999998 89999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          254 VMIGSIMADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +...+....         .++.+..++...+.+++.+... +....+.+|.+|+++|+++.++....
T Consensus       107 ~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~  163 (451)
T 1pw4_A          107 LFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCA  163 (451)
T ss_dssp             HHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHhhhhc---------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHH
Confidence            888762100         0223344555555566555443 34456679999999999999988776

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.75  E-value=9.8e-09  Score=97.39  Aligned_cols=118  Identities=11%  Similarity=0.098  Sum_probs=91.7

Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      .........|.+.++.|.++.+.+ ...+...+...++.++.|+++||+|||+.+..+.....++.+.....        
T Consensus        15 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------   85 (375)
T 2gfp_A           15 AQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------   85 (375)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------
Confidence            344445567777888999999998 89999999999999999999999999999999999888888877765        


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                           ++.+...+...+.+.+.+. ..+....+..|.+|+++|+++.++.+..
T Consensus        86 -----~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (375)
T 2gfp_A           86 -----SSLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMG  132 (375)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred             -----ccHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence                 2344445555555555443 3344456678999999999998887776

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.74  E-value=4.2e-08  Score=96.39  Aligned_cols=107  Identities=14%  Similarity=0.052  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCC-----CCCCchhhHHHHHHHHHHHHH
Q 017823          213 MSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGD-----HGGFSIGYAYLILVLICVYKA  287 (365)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  287 (365)
                      +..+...++..+|+++.|+++||+|||+.+.++.++..++.++.++........     ......++.+..++.-++.++
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~  138 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI  138 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence            566677888999999999999999999999999999988888777531000000     000012334555666666666


Q ss_pred             hhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          288 GFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       288 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      +.+.. .+....+.+|..|++.|++..++....
T Consensus       139 g~G~~-~~~~~~~i~E~~p~~~rg~~~~~~~~~  170 (491)
T 4gc0_A          139 GVGLA-SMLSPMYIAELAPAHIRGKLVSFNQFA  170 (491)
T ss_dssp             HHHHH-HHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence            65543 344567779999999999988876655

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.72  E-value=4.2e-08  Score=94.67  Aligned_cols=121  Identities=13%  Similarity=-0.038  Sum_probs=95.1

Q ss_pred             cccchhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCC
Q 017823          188 RINVISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDH  267 (365)
Q Consensus       188 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~  267 (365)
                      .........|.+.++.|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.++......      
T Consensus        41 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------  113 (438)
T 3o7q_A           41 ANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------  113 (438)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc------
Confidence            345566678888899999999999 9999999999999999999999999999999999999888887743210      


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          268 GGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                          .++.+..++...+.+.+.+....+ ...+.+|.+|+++|+++.++.+..
T Consensus       114 ----~~~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~  161 (438)
T 3o7q_A          114 ----IMNYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGHFRLNLAQTF  161 (438)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred             ----cccHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHHHHHHHHHHH
Confidence                123445556666666666544443 356679999999999998888777

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.69  E-value=9.5e-09  Score=99.61  Aligned_cols=115  Identities=12%  Similarity=0.080  Sum_probs=97.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhhhhh
Q 017823           15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSVWLF   94 (365)
Q Consensus        15 ~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~~~~   94 (365)
                      ....+...+...++..++.++.|++.||+|||+.+..+..+.+++.+..++.++.+.+++..++.+++.+...+      
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------  331 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV------  331 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHH------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH------
Confidence            45667888888888899999999999999999999988888888877777778888888888888887766666      


Q ss_pred             hhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhH-HHHHHHHHHHHHHHHhhhhc
Q 017823           95 YFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIG-FQVCVATAVLSANLLNYGTQ  156 (365)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~  156 (365)
                                           ....++.|..|++.|+...+. .+....+|..++|.+++.+.
T Consensus       332 ---------------------~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~  373 (417)
T 2cfq_A          332 ---------------------GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             ---------------------HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred             ---------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence                                 566788999999999999888 47888899999999988776

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.64  E-value=1.8e-07  Score=92.82  Aligned_cols=115  Identities=12%  Similarity=-0.034  Sum_probs=84.7

Q ss_pred             cccchhhcHHHHH-HHcC------CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh-CcchHHHHhHHHHHHHHHHHHHH
Q 017823          188 RINVISFYAPVLF-RTIK------LSESTSLLMSAIVTGSLGTISTSLSMILADRL-GRKVLFLVGGIQMLVSRVMIGSI  259 (365)
Q Consensus       188 ~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~l~~~~~~~~i~~~~~~~~  259 (365)
                      ..+....+.|.++ ++.|      .++.+.+ ...+...++..++.++.|+++||+ |||+.+..+.++..++.++....
T Consensus        27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~  105 (524)
T 2xut_A           27 SFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF  105 (524)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence            3444455666665 5678      8999998 899999999999999999999999 99999999988888887776653


Q ss_pred             HhhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHH
Q 017823          260 MADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQII  316 (365)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  316 (365)
                                 + .+.+...+...+.+++.+.. .+....+.+|.+|+++|+++.+.
T Consensus       106 -----------~-~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~  149 (524)
T 2xut_A          106 -----------E-HSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKA  149 (524)
T ss_dssp             -----------S-SCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHH
T ss_pred             -----------c-ccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHH
Confidence                       1 12344455555556665543 34445667999999999765554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.61  E-value=2.5e-07  Score=90.93  Aligned_cols=118  Identities=15%  Similarity=0.129  Sum_probs=85.6

Q ss_pred             cccchhhcHHHHH-HH-----cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-hCcchHHHHhHHHHHHHHHHHHHHH
Q 017823          188 RINVISFYAPVLF-RT-----IKLSESTSLLMSAIVTGSLGTISTSLSMILADR-LGRKVLFLVGGIQMLVSRVMIGSIM  260 (365)
Q Consensus       188 ~~~~~~~~~~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~i~~~~~~~~~  260 (365)
                      .++....+.+.++ ++     .|.+..+.+ ...+...++..++.++.|+++|| +|||+.+..+..+..++.+..... 
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-  105 (491)
T 4aps_A           28 SYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred             HHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-
Confidence            4444545566666 44     799999999 89999999999999999999999 899999999988888887776543 


Q ss_pred             hhhcCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhh--hhHHHHHHHHH
Q 017823          261 ADQIGDHGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEI--ISAGQIITVAA  320 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~  320 (365)
                                  ++.+...+...+.+.+.+... +....+.+|.+|+++  |+++.++.+..
T Consensus       106 ------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~  154 (491)
T 4aps_A          106 ------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFG  154 (491)
T ss_dssp             ------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred             ------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHH
Confidence                        123344445555555554433 444566789999988  66666654444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.81
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.11
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.82

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.2e-26  Score=223.31  Aligned_cols=272  Identities=14%  Similarity=-0.022  Sum_probs=204.3

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhhcchhh
Q 017823           10 YSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAF----NIYMLIFGRVLLGVGIGF   85 (365)
Q Consensus        10 ~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~----~~~~~~~~r~l~G~~~g~   85 (365)
                      ++|+|.++.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++.++++    +++.++++|++.|++.|.
T Consensus        53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  132 (447)
T d1pw4a_          53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM  132 (447)
T ss_dssp             SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhh
Confidence            4688899999999999999999999999999999999999999999999999888764    778999999999999999


Q ss_pred             hhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCCcchH
Q 017823           86 ANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVGWGWR  165 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~gwr  165 (365)
                      ..+                           ....++.|++|+|+|++++++.+.+..+|..+++.++.......  .+||
T Consensus       133 ~~~---------------------------~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--~~w~  183 (447)
T d1pw4a_         133 GWP---------------------------PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWH  183 (447)
T ss_dssp             THH---------------------------HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCST
T ss_pred             hhh---------------------------HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--hccc
Confidence            999                           88999999999999999999999999999999998877665433  2466


Q ss_pred             HHH----------------------------------------------------------HhHHHHHHHHHHHHHHhcc
Q 017823          166 ISL----------------------------------------------------------KYRLQFVMAILIPFFQHVT  187 (365)
Q Consensus       166 ~~f----------------------------------------------------------~~~~~~~~~~~~~~~~~~~  187 (365)
                      +.+                                                          ..+++..+......+....
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (447)
T d1pw4a_         184 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL  263 (447)
T ss_dssp             TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhh
Confidence            655                                                          0011223333333333333


Q ss_pred             cccchhhcHHHHHH-HcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCC
Q 017823          188 RINVISFYAPVLFR-TIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGD  266 (365)
Q Consensus       188 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~  266 (365)
                      .......+.|.+++ ..+.+..+.. .......+..+++.++.+++.||++||+....................      
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  336 (447)
T d1pw4a_         264 LRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW------  336 (447)
T ss_dssp             HHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT------
T ss_pred             hhhcchhhhhhhcccccccccchhh-hhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH------
Confidence            44556667777774 4688888888 888999999999999999999999988655544443333333332221      


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          267 HGGFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                        .....+.+...++.++.+++.. +..+....+..|.+|++.|+++.|+.+..
T Consensus       337 --~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  387 (447)
T d1pw4a_         337 --MNPAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLF  387 (447)
T ss_dssp             --SCCTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             --hcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence              1112234444444444444433 33445566778999999999999987765

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5e-20  Score=172.44  Aligned_cols=262  Identities=10%  Similarity=0.018  Sum_probs=170.3

Q ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHhhcch
Q 017823            8 SNYSKFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYML----IFGRVLLGVGI   83 (365)
Q Consensus         8 ~~~~~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~----~~~r~l~G~~~   83 (365)
                      ++++|+|+++.|++.+++.++..+++++.|+++||+|||++++.+..+..++..+..+..+....    ++.+.+.+.+.
T Consensus        35 ~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (417)
T d1pv7a_          35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL  114 (417)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTG
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence            34567889999999999999999999999999999999999999999998888888877665443    44455555444


Q ss_pred             hhhhhhhhhhhhhcccccchhhhhHHHhhcccccceeecccCC--CCCcchhhhHHHHHHHHHHHHHHHHhhhhccccCC
Q 017823           84 GFANQVSVWLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAP--PKNRGAFNIGFQVCVATAVLSANLLNYGTQKIKVG  161 (365)
Q Consensus        84 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  161 (365)
                      +....                           .......+..+  .+++.+..+........+..+++.++..+.+.   
T Consensus       115 ~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---  164 (417)
T d1pv7a_         115 GFCFN---------------------------AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---  164 (417)
T ss_dssp             GGGGT---------------------------THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             ccccc---------------------------chhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc---
Confidence            44443                           22222222222  23455666777778888888888888777632   


Q ss_pred             cchHHHH-------------------------------------------------HhHHHHHHHHHHHHHHhcccccch
Q 017823          162 WGWRISL-------------------------------------------------KYRLQFVMAILIPFFQHVTRINVI  192 (365)
Q Consensus       162 ~gwr~~f-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  192 (365)
                       +|+..+                                                 +..+...........    .....
T Consensus       165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  239 (417)
T d1pv7a_         165 -NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSC----TYDVF  239 (417)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHH----HHHHH
T ss_pred             -cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHH----HHHhh
Confidence             233333                                                 001111111111111    11111


Q ss_pred             hhcHHHHHHH----cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCC
Q 017823          193 SFYAPVLFRT----IKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHG  268 (365)
Q Consensus       193 ~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  268 (365)
                      ....+.+...    .+.+..... .......++..++..+.+++.||.++|+.+..+..+..++.+.+...         
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------  309 (417)
T d1pv7a_         240 DQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------  309 (417)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred             hccccccccccccccccchhhhc-ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc---------
Confidence            1122222221    222334444 56677778888999999999999999999999888887777766553         


Q ss_pred             CCchhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHH
Q 017823          269 GFSIGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVA  319 (365)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  319 (365)
                          ++.+...+...+.+++.+.... ....+.+|.+|++.|+++.++...
T Consensus       310 ----~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  355 (417)
T d1pv7a_         310 ----TSALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFC  355 (417)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCGGGHHHHHHHHHT
T ss_pred             ----cccchhhHHHHHHHHHHHHHHH-HHHHHHHHHCCHhHHHHHHHHHHH
Confidence                2344455555566666554444 445667899999999999887544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.5e-10  Score=109.42  Aligned_cols=117  Identities=12%  Similarity=0.036  Sum_probs=87.2

Q ss_pred             hhhcHHHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhCcchHHHHhHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 017823          192 ISFYAPVLFRTIKLSESTSLLMSAIVTGSLGTISTSLSMILADRLGRKVLFLVGGIQMLVSRVMIGSIMADQIGDHGGFS  271 (365)
Q Consensus       192 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  271 (365)
                      +....|. +++.|++.++.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.+..+.....         
T Consensus        44 ~~~~~p~-~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---------  112 (447)
T d1pw4a_          44 FALAMPY-LVEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------  112 (447)
T ss_dssp             HHHHHHH-TTSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH---------
T ss_pred             HHHHHHH-HHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh---------
Confidence            3444554 456899999999 99999999999999999999999999999999999888888877664211         


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccccccccCCChhhhhHHHHHHHHH
Q 017823          272 IGYAYLILVLICVYKAGFAFSWGPLRWLVPSENFPLEIISAGQIITVAA  320 (365)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  320 (365)
                      ....+..++...+.+++.+..+.+. ..+..|.+|+++|+++.++.+..
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~  160 (447)
T d1pw4a_         113 TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCA  160 (447)
T ss_dssp             HSSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhcccccccccccc
Confidence            0122344444455555544444433 45668999999999999987776

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.8e-09  Score=99.36  Aligned_cols=127  Identities=11%  Similarity=0.070  Sum_probs=111.4

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcchhhhhhhhh
Q 017823           12 KFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVRSTAFLAGSALRGAAFNIYMLIFGRVLLGVGIGFANQVSV   91 (365)
Q Consensus        12 ~~~~~~~~~~~s~~~i~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~a~~~~~~~~~r~l~G~~~g~~~~~~~   91 (365)
                      +.+....+...+...++..++..+.+++.||+|||+.+..+..+..++.+...+.++.+.+++..++.|++.+...+   
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~---  331 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV---  331 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH---
Confidence            34466777888888899999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             hhhhhcccccchhhhhHHHhhcccccceeecccCCCCCcchhhhHH-HHHHHHHHHHHHHHhhhhccccCCcchHHHH
Q 017823           92 WLFYFSQTCDLLNNFQLVLICWLQSVPLYLSEMAPPKNRGAFNIGF-QVCVATAVLSANLLNYGTQKIKVGWGWRISL  168 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~gwr~~f  168 (365)
                                              ....++.|..|+++|++..+.. +....+|..+++.+.+.+.+   ..||+..+
T Consensus       332 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~---~~g~~~~~  382 (417)
T d1pv7a_         332 ------------------------GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---SIGFQGAY  382 (417)
T ss_dssp             ------------------------HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHCHHHHH
T ss_pred             ------------------------HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHH
Confidence                                    8888999999999999999975 56788999999999888873   34565543