Citrus Sinensis ID: 017835
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 365 | 2.2.26 [Sep-21-2011] | |||||||
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.978 | 1.0 | 0.616 | 1e-133 | |
| Q6VMW0 | 366 | 8-hydroxyquercetin 8-O-me | N/A | no | 0.950 | 0.948 | 0.543 | 1e-106 | |
| B0EXJ8 | 355 | Tabersonine 16-O-methyltr | N/A | no | 0.961 | 0.988 | 0.526 | 1e-101 | |
| Q93WU2 | 357 | Eugenol O-methyltransfera | N/A | no | 0.947 | 0.969 | 0.484 | 6e-95 | |
| Q93WU3 | 356 | Chavicol O-methyltransfer | N/A | no | 0.945 | 0.969 | 0.481 | 5e-93 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.967 | 0.980 | 0.473 | 1e-92 | |
| Q8GSN1 | 348 | Myricetin O-methyltransfe | N/A | no | 0.936 | 0.982 | 0.490 | 1e-91 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.950 | 0.985 | 0.462 | 1e-90 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.950 | 0.985 | 0.459 | 1e-90 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.950 | 0.985 | 0.459 | 2e-90 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function desciption |
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Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/365 (61%), Positives = 273/365 (74%), Gaps = 8/365 (2%)
Query: 1 MDLTKGKNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQL 60
MDL G IS ELL +QAHVWN+IF+F+ SMSLKCAIQLGIPDIIHNH KPMTL +L
Sbjct: 1 MDLANGV----ISAELLHAQAHVWNHIFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPEL 56
Query: 61 LTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAP 120
+ L +HP ++QCVY LMRILVHSGF A Q+ + ++EEGY+LT AS+LLL D LS+ P
Sbjct: 57 VAKLPVHPKRSQCVYRLMRILVHSGFLAAQRVQQGKEEEGYVLTDASRLLLMDDSLSIRP 116
Query: 121 FLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMA 180
+LAMLDPILTKPWH +S W QNDD T F + +FWDYA E +LN+ FNE MA
Sbjct: 117 LVLAMLDPILTKPWHYLSAWFQNDD----PTPFHTAYERSFWDYAGHEPQLNNSFNEAMA 172
Query: 181 SDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLK 240
SD RL +S L+ + + VF GLN+LVDVGGGTG +A AIA FPH+ CTV D HVVA L+
Sbjct: 173 SDARLLTSVLLKEGQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQ 232
Query: 241 SNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300
+ NL Y G+MFEAIPPADA+L+K +LH+W++EECVKILK C++AI GKVIIID
Sbjct: 233 GSKNLNYFAGDMFEAIPPADAILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIID 292
Query: 301 IKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSL 360
+ M + DYK+TETQLF DM MM+ G ER+E EW KLF +AGFS YKIT +LG+RSL
Sbjct: 293 MIMMKNQGDYKSTETQLFFDMTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGLRSL 352
Query: 361 IEVYP 365
IEVYP
Sbjct: 353 IEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0 |
| >sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1 | Back alignment and function description |
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Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/359 (54%), Positives = 259/359 (72%), Gaps = 12/359 (3%)
Query: 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCV 74
ELL++QAHVWN+I+S++NSMSLKCAIQLGIPD IH H P+TL+QL L I+ K+ +
Sbjct: 12 ELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHGL 71
Query: 75 YHLMRILVHSGFF-------ALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLD 127
+ LMRILVHSGFF ++ E E+E+ Y LT AS+LLL+ PLS+APF LAM D
Sbjct: 72 FRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMSD 131
Query: 128 PILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTS 187
P+ T+ WH +S W +ND A F +GM F +YAV + RLN FNE MA D +
Sbjct: 132 PVYTETWHHLSEWFRND----AVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVN 187
Query: 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKY 247
S L +C+++F+GL ++VDVGGGTG A IA FP +ECTV D P+VV LK + NL +
Sbjct: 188 SILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSF 247
Query: 248 VGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIA-INGKAGKVIIIDIKMESE 306
V G+MF+ IP ADA+ +K +LH+WNDEECVKILK CK+AI+ N K+I+++I ME E
Sbjct: 248 VSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDE 307
Query: 307 KADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
K ++ TET+LF DM M+ ++ G+ER+EKEW KLFF+AGF++YKIT VLG+RS+IEV+P
Sbjct: 308 KETHEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
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8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether. Mentha piperita (taxid: 34256) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1 | Back alignment and function description |
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Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/359 (52%), Positives = 246/359 (68%), Gaps = 8/359 (2%)
Query: 10 DNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL--QIH 67
D S+E +QA +W+ SF+ S SLKCA++LGIPD I NH KP+TL++L L +H
Sbjct: 2 DVQSEEFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVH 61
Query: 68 PTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLD 127
P+K +Y LMR+L +GF + ++ + E E Y LT +S++LLK PL+L +L M D
Sbjct: 62 PSKAPFIYRLMRVLAKNGFCS-EEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMAD 120
Query: 128 PILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTS 187
P+ K W +S W QN+DD ++T F HG NFW Y+ FFNE MASD++L S
Sbjct: 121 PVQLKAWESLSDWYQNEDD--SSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLIS 178
Query: 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKY 247
LI + K +FEGL +LVD+GGGTGT+A AIAK FP ++CTVFD PHVVA+L+S N+++
Sbjct: 179 KLLIGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEF 238
Query: 248 VGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307
V G+MFE IP A+A+ +K +LH+WNDE+CVKILK+CKKAI K GKVIIID+ M S+K
Sbjct: 239 VAGDMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIP--AKGGKVIIIDMVMYSDK 296
Query: 308 ADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLG-VRSLIEVYP 365
D +TQ MDM M+V +ER EKEWA LF EAGFSDYKI L RSLIEVYP
Sbjct: 297 KDDHLVKTQTSMDMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
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16-O-methyltransferase involved in the biosynthesis of vindoline. Highly specific for 16-hydroxytabersonine. No activity with tabersonine, 3-hydroxytyramine, 4-hydroxytyramine, 5-hydroxytryptamine (5HT), 2,3-dihydro-3-hydroxytabersonine, lochnericine, hoerhammericine, 16-hydroxy-2,3-dihydro-3-hydroxytabersonine, 16-hydroxylochnericine, 16-hydroxyhoerhammericine, quercetin, kaempferol and caffeic acid as substrates. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1 | Back alignment and function description |
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Score = 347 bits (891), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 231/353 (65%), Gaps = 7/353 (1%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
+++LLQ+Q HVWN++++F NSMSLKCAIQLGIPDI+H H +PMTL+QLL ++ I+ KTQ
Sbjct: 12 TEQLLQAQVHVWNHMYAFANSMSLKCAIQLGIPDILHKHGRPMTLSQLLQSIPINKEKTQ 71
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTK 132
C LMR LV+S FF +++ + N QE Y LT AS LLLK+ PL++ P + +LDP T
Sbjct: 72 CFQRLMRALVNSNFF-IEENNSNNQEVCYWLTPASCLLLKEAPLTVTPLVQVVLDPTFTN 130
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
PWH +S W ++ AT F +G FW+ E FF+E M+ D+RL +
Sbjct: 131 PWHHMSEWFTHEKH---ATQFEAANGCTFWEKLANEPSKGRFFDEAMSCDSRLIAHVFTK 187
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNM 252
K V EG+ TLVDVGGG GT+A AI + P I+CTV D PHVVA L+S NL Y+GG+M
Sbjct: 188 DYKHVIEGIRTLVDVGGGNGTMAKAIVEAMPTIKCTVIDLPHVVAGLESTDNLNYIGGDM 247
Query: 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312
F++IP ADA+L+K ++H+W+D E +KILK CK A+ + GK + + + + D +
Sbjct: 248 FQSIPSADAILLKSIIHDWDDVEGLKILKKCKDAVVMGGKVIIIDV--VVGVNHDID-EV 304
Query: 313 TETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
E QL DM MM +ER EW KL ++AGF YK+T GVRSLIE YP
Sbjct: 305 LEDQLHFDMAMMCYFNAKERTMSEWEKLIYDAGFKSYKLTPAFGVRSLIEAYP 357
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Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
| >sp|Q93WU3|CVMT1_OCIBA Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1 | Back alignment and function description |
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Score = 341 bits (874), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 170/353 (48%), Positives = 231/353 (65%), Gaps = 8/353 (2%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
+++LLQ+QAHVWN++++F NSMSLKCAIQLGIPDI+H H PMTL+QLL + I+ K+Q
Sbjct: 12 TEQLLQAQAHVWNHMYAFANSMSLKCAIQLGIPDILHKHDHPMTLSQLLKAIPINKEKSQ 71
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTK 132
LMR LV+S FF + + N QE Y LT AS+LLLK PL++AP + +LDP T
Sbjct: 72 SFQRLMRALVNSNFFI--EENSNNQEVCYWLTPASRLLLKGAPLTVAPLVQVVLDPTFTN 129
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
PWH +S W ++++ AT F +G FW+ + + FF+E M+ D+RL + L
Sbjct: 130 PWHYMSEWFKHENH---ATQFEAANGCTFWEKLANKPSMGRFFDEAMSCDSRLVAHVLTK 186
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNM 252
K V +G+ TLVDVGGG GT+A AI + P ++CTV D PHVVA L+S L Y+GG+M
Sbjct: 187 DYKHVIDGIRTLVDVGGGNGTMAKAIVEAVPTMKCTVLDLPHVVAGLESTDKLSYIGGDM 246
Query: 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312
F++IP ADA+L+K ++H+W+DEE +KILK CK A+ I GK + + + + D +
Sbjct: 247 FQSIPSADAILLKFIIHDWDDEEGLKILKRCKDAVGIGGKVIIIDV--VVGVNHDVD-EV 303
Query: 313 TETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
E QL DM MM +ER EW KL AGF+ YK+T GVRSLIE YP
Sbjct: 304 LEDQLHFDMAMMSYFNAKERTMNEWEKLISAAGFTSYKLTPAFGVRSLIEAYP 356
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Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of chavicol to methylchavicol. Can also convert eugenol to methyleugenol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
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Score = 340 bits (872), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/359 (47%), Positives = 237/359 (66%), Gaps = 6/359 (1%)
Query: 9 NDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHP 68
N + EL +Q H++ ++++FV+SM+LK A++LGI D IHNH KPMTL +L ++L++HP
Sbjct: 6 NGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLPELSSSLKLHP 65
Query: 69 TKTQCVYHLMRILVHSGFFALQ--KTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAML 126
+K +Y +R+L H+GFFA K++E E+E Y+LT +SKLL+ L+ + L
Sbjct: 66 SKVNILYRFLRLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGAL 125
Query: 127 DPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLT 186
P W W D + T F G N+WD+ +++ F + MA+D+RL
Sbjct: 126 HPSSLDMWGVSKKWFHEDKEQ---TLFECATGENYWDFLNKDSDSLSMFQDAMAADSRLF 182
Query: 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLK 246
A I + K VFEGL +LVDV GGTG +A I + FPHI+CTVFDQP VV +L N NL
Sbjct: 183 KLA-IQENKHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLN 241
Query: 247 YVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306
+VGG+MF+++P ADAVL+K VLH+WNDE +KILKN K+AI+ GK GKVIIIDI ++
Sbjct: 242 FVGGDMFKSVPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDEN 301
Query: 307 KADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
D TE QL D++M+ + G+ER +KEW KL ++AGFS YKIT + G +SLIEVYP
Sbjct: 302 SDDRGLTELQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
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Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q8GSN1|MOMT_CATRO Myricetin O-methyltransferase OS=Catharanthus roseus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/355 (49%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
S E+ +QAH + +FSF + SLKCA+QLGIPD IH+H KPM L+ L +L I+P+K
Sbjct: 5 SSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKAP 64
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTK 132
+Y LMRILV +G+F+ E++ Y LT ++LLLK+ PL+ +L + K
Sbjct: 65 YIYRLMRILVAAGYFS------EEEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELK 118
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
W+ +S W QN+D T F HG NFWD+ E + F+ MA+D+ L S LI
Sbjct: 119 AWNAMSEWFQNED----LTAFETAHGKNFWDFGA-EDKYGKNFDGVMAADSILVSKMLIP 173
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNM 252
+ +FEGL++LVDVGGGTGT+A AIAK FP ++CTVFD PHVVA+L+S NL++VGG+M
Sbjct: 174 EFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDM 233
Query: 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID-IKMESEK-ADY 310
FE IP A+A+L+K +LH+W DEECVK+LK C+KAI K GKVI+I+ + M+S+K +
Sbjct: 234 FEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENE 293
Query: 311 KTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+ + Q+ D+ MMV +ER E+EWA LF EAGFS YKI ++ RS IEVYP
Sbjct: 294 EAVKAQISSDIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
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Methylates myricetin and dihydromyricetin at 2 sites. Inactive towards 16-hydroxytabersonine, the phenylpropanoids 5-hydroxyferulate, caffeate and their CoA-esters, flavones and flavonones possessing 2 or 3 B-ring hydroxyl groups. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 9 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/357 (46%), Positives = 239/357 (66%), Gaps = 10/357 (2%)
Query: 9 NDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHP 68
N E+ ++QA ++ +I++F++SMSLK A+ + IP+IIHNH KP++L+ L++ LQ+
Sbjct: 6 NGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVPS 65
Query: 69 TKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP 128
+K V LMR L H+GFF + ++EE Y LT AS+LL++ L LAP + +LDP
Sbjct: 66 SKIGNVRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRGSDLCLAPMVECVLDP 121
Query: 129 ILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSS 188
L+ +H++ WI +D T F + G FWD+ + N FN+ MASD++L +
Sbjct: 122 TLSGSYHELKKWIYEED----LTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYV 248
AL C VF+GL ++VDVGGGTGT A I + FP ++C VFD+P VV +L + NL YV
Sbjct: 178 AL-RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYV 236
Query: 249 GGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA 308
GG+MF +IP ADAVL+K +LHNW D++C++ILK CK+A+ +GK GKV IID+ + +K
Sbjct: 237 GGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKKD 296
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+ + T+ +L MD+ M L G+ERNE+EW KLF EAGF YKI+ + G SLIE+YP
Sbjct: 297 ENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 240/357 (67%), Gaps = 10/357 (2%)
Query: 9 NDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHP 68
N E+ ++QA ++ +I++F++SMSLK A+++ IP+II NH KP++L+ L++ LQ+
Sbjct: 6 NGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPS 65
Query: 69 TKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP 128
+K V LMR L H+GFF + ++EE Y LT AS+LL++ L LAP + +LDP
Sbjct: 66 SKIGNVRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRGSDLCLAPMVECVLDP 121
Query: 129 ILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSS 188
L+ +H++ WI +D T F + G FWD+ + N FN+ MASD++L +
Sbjct: 122 TLSGSYHELKKWIYEED----LTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYV 248
AL C VF+GL ++VDVGGGTGT A I + FP ++C VFD+P VV +L + NL YV
Sbjct: 178 AL-RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYV 236
Query: 249 GGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA 308
GG+MF +IP ADAVL+K +LHNW D++C++ILK CK+A+ +GK GKV IID+ ++ +K
Sbjct: 237 GGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKD 296
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+ + T+ +L MD+ M L G+ERNE+EW KLF EAGF YKI+ + G SLIE+YP
Sbjct: 297 ENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 240/357 (67%), Gaps = 10/357 (2%)
Query: 9 NDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHP 68
N E+ ++QA ++ +I++F++SMSLK A+++ IP+II NH KP++L+ L++ LQ+
Sbjct: 6 NGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPS 65
Query: 69 TKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP 128
+K V LMR L H+GFF + ++EE Y LT AS+LL++ L LAP + +LDP
Sbjct: 66 SKIGNVRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRGSDLCLAPMVECVLDP 121
Query: 129 ILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSS 188
L+ +H++ WI +D T F + G FWD+ + N FN+ MASD++L +
Sbjct: 122 TLSGSYHELKKWIYEED----LTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYV 248
AL C VF+GL ++VDVGGGTGT A I + FP ++C VFD+P VV +L + NL YV
Sbjct: 178 AL-RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYV 236
Query: 249 GGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA 308
GG+MF +IP ADAVL+K +LHNW D++C++ILK CK+A+ +GK GKV IID+ ++ +K
Sbjct: 237 GGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD 296
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+ + T+ +L MD+ M L G+ERNE+EW KLF EAGF YKI+ + G SLIE+YP
Sbjct: 297 ENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 365 | ||||||
| 147816431 | 357 | hypothetical protein VITISV_020020 [Viti | 0.956 | 0.977 | 0.688 | 1e-144 | |
| 225446491 | 357 | PREDICTED: 8-hydroxyquercetin 8-O-methyl | 0.956 | 0.977 | 0.688 | 1e-144 | |
| 330375623 | 367 | orcinol O-methyltransferase-like protein | 0.980 | 0.975 | 0.666 | 1e-140 | |
| 224146520 | 357 | flavonoid o-methyltransferase related [P | 0.947 | 0.969 | 0.675 | 1e-138 | |
| 20514369 | 366 | orcinol O-methyltransferase [Rosa hybrid | 0.978 | 0.975 | 0.655 | 1e-137 | |
| 225446494 | 357 | PREDICTED: tabersonine 16-O-methyltransf | 0.978 | 1.0 | 0.638 | 1e-137 | |
| 147865742 | 357 | hypothetical protein VITISV_005827 [Viti | 0.978 | 1.0 | 0.638 | 1e-137 | |
| 20514367 | 367 | orcinol O-methyltransferase [Rosa hybrid | 0.980 | 0.975 | 0.650 | 1e-136 | |
| 225446489 | 357 | PREDICTED: 8-hydroxyquercetin 8-O-methyl | 0.956 | 0.977 | 0.648 | 1e-135 | |
| 123718246 | 346 | putative orcinol O-methyltransferase [Ro | 0.939 | 0.991 | 0.669 | 1e-134 |
| >gi|147816431|emb|CAN61955.1| hypothetical protein VITISV_020020 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/353 (68%), Positives = 283/353 (80%), Gaps = 4/353 (1%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
S ELL +QAHVWN+IF+F+NSMSLKCAIQLGIPDIIHNH KPMTL +L+ L IHP K
Sbjct: 9 SSELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPIHPKKVW 68
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTK 132
CVY LMRILV SGFFA QK E+EQEEGY+LT AS+LLL+D PLS+ PFLLAMLDPILTK
Sbjct: 69 CVYRLMRILVQSGFFARQKVEESEQEEGYVLTHASRLLLEDDPLSVRPFLLAMLDPILTK 128
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
PWH VS W QNDD T F HG FWDY E +JN+FFNE MASD RL +S LI
Sbjct: 129 PWHYVSAWFQNDD----PTPFDTAHGXTFWDYGGHEPKJNNFFNEAMASDARLVTSXLIK 184
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNM 252
CK VFEGLN+LVDVGGGTGT+A AIA FPH+ CTVFD PHVVA L+ + NL Y+GG+M
Sbjct: 185 DCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGSKNLNYLGGDM 244
Query: 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312
F+ IPPADA+L+K +LH+WNDEECVKIL+ C++AI K GKVIIID+ ME++K D ++
Sbjct: 245 FKGIPPADAILLKWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDES 304
Query: 313 TETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
ETQLF DMLMM+LV G+ERNEKEW KLF +AGFS YKIT +LG+RSLIEVYP
Sbjct: 305 METQLFFDMLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446491|ref|XP_002278211.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/353 (68%), Positives = 283/353 (80%), Gaps = 4/353 (1%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
S ELL +QAHVWN+IF+F+NSMSLKCAIQLGIPDIIHNH KPMTL +L+ L IHP K
Sbjct: 9 SSELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPIHPKKVW 68
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTK 132
CVY LMRILV SGFFA QK E+EQEEGY+LT AS+LLL+D PLS+ PFLLAMLDPILTK
Sbjct: 69 CVYRLMRILVQSGFFARQKVEESEQEEGYVLTHASRLLLEDDPLSVRPFLLAMLDPILTK 128
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
PWH VS W QNDD T F HG FWDY E ++N+FFNE MASD RL +S LI
Sbjct: 129 PWHYVSAWFQNDD----PTPFDTAHGRTFWDYGGHEPKINNFFNEAMASDARLVTSVLIK 184
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNM 252
CK VFEGLN+LVDVGGGTGT+A AIA FPH+ CTVFD PHVVA L+ + NL Y+GG+M
Sbjct: 185 DCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGSKNLNYLGGDM 244
Query: 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312
F+ IPPADA+L+K +LH+WNDEECVKIL+ C++AI K GKVIIID+ ME++K D ++
Sbjct: 245 FKGIPPADAILLKWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDES 304
Query: 313 TETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
ETQLF DMLMM+LV G+ERNEKEW KLF +AGFS YKIT +LG+RSLIEVYP
Sbjct: 305 METQLFFDMLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|330375623|gb|AEC13057.1| orcinol O-methyltransferase-like protein [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/363 (66%), Positives = 286/363 (78%), Gaps = 5/363 (1%)
Query: 3 LTKGKNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLT 62
L + +N S+ELL +QAH+WN+IFSF+NSMSLK AIQLGIPDII+ H PMTL++L +
Sbjct: 10 LNQKWSNGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTS 69
Query: 63 TLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFL 122
L IHPTK+ VY LMRILVHSGFFA +K S+ + EEGY LT AS+LLLKDHPLSL PFL
Sbjct: 70 ALPIHPTKSHSVYRLMRILVHSGFFAKKKLSKTD-EEGYTLTDASQLLLKDHPLSLTPFL 128
Query: 123 LAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASD 182
AMLDP+LTKPW+ +STW QNDD T F HGM FWDY + + HFFN+ MASD
Sbjct: 129 TAMLDPVLTKPWNYLSTWFQNDD----PTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASD 184
Query: 183 TRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN 242
RL +S +I CK VFEGL +LVDVGGGTGT+A AIA FPHIECTV D PHVVADL+ +
Sbjct: 185 ARLVTSVIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS 244
Query: 243 GNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302
NLKY GG+MFEA+PPAD VL+K +LH+WNDEECVKILK ++AI K GKVIIID+
Sbjct: 245 KNLKYTGGDMFEAVPPADTVLLKWILHDWNDEECVKILKRSREAITSKDKNGKVIIIDMM 304
Query: 303 MESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIE 362
ME++K D ++ ETQLF DMLMM LV G+ERNEKEWAKLF +AGFSDYKIT +LG+RSLIE
Sbjct: 305 MENQKGDEESIETQLFFDMLMMALVTGKERNEKEWAKLFTDAGFSDYKITPILGLRSLIE 364
Query: 363 VYP 365
VYP
Sbjct: 365 VYP 367
|
Source: Rosa chinensis Species: Rosa chinensis Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146520|ref|XP_002326036.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222862911|gb|EEF00418.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/351 (67%), Positives = 285/351 (81%), Gaps = 5/351 (1%)
Query: 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCV 74
ELLQ+QAHVWN+IF+FVNSMSLKCAIQLGIPD+IHNH KPMTL++L+ L IHP+K +
Sbjct: 12 ELLQAQAHVWNHIFNFVNSMSLKCAIQLGIPDVIHNHGKPMTLSELVAVLPIHPSKAPGI 71
Query: 75 YHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPW 134
Y LMRILVHSGFFA Q S + EGY+LT+AS+LL+KD+P S+ PFLLAMLDPILT+PW
Sbjct: 72 YRLMRILVHSGFFATQNNSGETEGEGYVLTNASQLLIKDNPFSVTPFLLAMLDPILTQPW 131
Query: 135 HQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKC 194
H VS W QND A ++F H W+YA ET LNHFFNE MASD RL SS L+++C
Sbjct: 132 HYVSVWFQND----APSSFYTAHQRTCWEYAGHETELNHFFNEAMASDARLVSSVLVNEC 187
Query: 195 KDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE 254
K VFEGLN+LVDVGGGTGT+A AIAK+F H++CTVFD PHVVA L+ + NLKY+ G+MFE
Sbjct: 188 KGVFEGLNSLVDVGGGTGTVAKAIAKEFQHLDCTVFDLPHVVAGLEGSENLKYLSGDMFE 247
Query: 255 AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE 314
AIP ADA+L+K +LH+WNDEECVKILK CK+AI + GK+IIID+ +E+ K +TE
Sbjct: 248 AIPQADAILLKWILHDWNDEECVKILKQCKEAIK-GREGGKLIIIDMVVENNKEVEGSTE 306
Query: 315 TQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
TQLF DMLMM+LV G+ERNEKEWAKLF +AGFS+YKI VLG+RSLIEVYP
Sbjct: 307 TQLFFDMLMMILVTGKERNEKEWAKLFTDAGFSNYKINPVLGLRSLIEVYP 357
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20514369|gb|AAM23005.1|AF502434_1 orcinol O-methyltransferase [Rosa hybrid cultivar] gi|27527924|emb|CAD29459.1| orcinol O-methyltransferase [Rosa chinensis] gi|53748112|emb|CAH05078.1| orcinol O-methyltransferase 2 [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/363 (65%), Positives = 284/363 (78%), Gaps = 6/363 (1%)
Query: 3 LTKGKNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLT 62
L + +N S+ELL +QAH+WN+IFSF+NSMSLK AIQLGIPDII+ H PMTL++L +
Sbjct: 10 LNQKWSNGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHG-PMTLSELTS 68
Query: 63 TLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFL 122
L IHPTK+ VY LMRILVHSGFFA +K S+ + EEGY LT AS+LLLKDHPLSL PFL
Sbjct: 69 ALPIHPTKSHSVYRLMRILVHSGFFAKKKLSKTD-EEGYTLTDASQLLLKDHPLSLTPFL 127
Query: 123 LAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASD 182
AMLDP+LT PW+ +STW QN+D T F HGM FWDY + + H FN+ MASD
Sbjct: 128 TAMLDPVLTTPWNYLSTWFQNED----PTPFDTAHGMTFWDYGNHQPSIAHLFNDAMASD 183
Query: 183 TRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN 242
RL +S +I CK VFEGL +LVDVGGGTGT+A AIA FPHIECTV D PHVVADL+ +
Sbjct: 184 ARLVTSVIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS 243
Query: 243 GNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302
NLKY GG+MFEA+PPAD VL+K +LH+WNDEEC+KILK + AI K GKVIIID+
Sbjct: 244 KNLKYTGGDMFEAVPPADTVLLKWILHDWNDEECIKILKRSRVAITSKDKKGKVIIIDMM 303
Query: 303 MESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIE 362
ME++K D ++ ETQLF DMLMM LV+G+ERNEKEWAKLF +AGFSDYKIT +LG+RSLIE
Sbjct: 304 MENQKGDEESIETQLFFDMLMMALVRGQERNEKEWAKLFTDAGFSDYKITPILGLRSLIE 363
Query: 363 VYP 365
VYP
Sbjct: 364 VYP 366
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446494|ref|XP_002278294.1| PREDICTED: tabersonine 16-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/365 (63%), Positives = 279/365 (76%), Gaps = 8/365 (2%)
Query: 1 MDLTKGKNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQL 60
MDL G+ IS ELL +QAHVWN+IF+F+NSMSLKCAIQLGIPDIIHNH KPMT +L
Sbjct: 1 MDLANGE----ISAELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTFPEL 56
Query: 61 LTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAP 120
+ L +HP ++QCVY LMRILVHSGF A Q+ + EQEEGY+LT AS+LLL D LS+ P
Sbjct: 57 VAKLPVHPKRSQCVYRLMRILVHSGFLAAQRVQQGEQEEGYVLTDASRLLLMDDSLSIRP 116
Query: 121 FLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMA 180
FLLAMLDP+LTKPWH +S W QNDD T F H FWDYA E +LN+FFNE MA
Sbjct: 117 FLLAMLDPVLTKPWHYLSAWFQNDD----PTPFHTAHEQPFWDYAGHEPQLNNFFNEAMA 172
Query: 181 SDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLK 240
SD+RL S L+ + K +FEGLN+LVDVGGGTG +A AIA FPH+ CTV D PHVVA L+
Sbjct: 173 SDSRLVISVLLKEGKGLFEGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLPHVVAGLQ 232
Query: 241 SNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300
+ NL Y G+MFEAIPPADA+L+K +LH+W+DEECVKILK C++AI GKVIIID
Sbjct: 233 ESKNLNYFAGDMFEAIPPADAILLKWILHDWSDEECVKILKRCREAIPSKENGGKVIIID 292
Query: 301 IKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSL 360
+ M + DYK+ ETQL+ DM+MM+LV G ER+E EW KLF +AGFS YKIT +LG+RSL
Sbjct: 293 MIMMKNQGDYKSVETQLYFDMVMMILVTGRERDENEWEKLFLDAGFSHYKITPILGLRSL 352
Query: 361 IEVYP 365
IEVYP
Sbjct: 353 IEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865742|emb|CAN78992.1| hypothetical protein VITISV_005827 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/365 (63%), Positives = 279/365 (76%), Gaps = 8/365 (2%)
Query: 1 MDLTKGKNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQL 60
MDL G+ IS ELL +QAHVWN+IF+F+NSMSLKCAIQLGIPDIIHNH KPMT +L
Sbjct: 1 MDLANGE----ISAELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTFPEL 56
Query: 61 LTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAP 120
+ L +HP ++QCVY LMRILVHSGF A Q+ + EQEEGY+LT AS+LLL D LS+ P
Sbjct: 57 VAKLPVHPKRSQCVYRLMRILVHSGFLAAQRVQQGEQEEGYVLTDASRLLLMDDSLSIRP 116
Query: 121 FLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMA 180
FLLAMLDP+LTKPWH +S W QNDD T F H FWDYA E +LN+FFNE MA
Sbjct: 117 FLLAMLDPVLTKPWHYLSAWFQNDD----PTPFHTAHEQPFWDYAGHEPQLNNFFNEAMA 172
Query: 181 SDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLK 240
SD+RL S L+ + K +FEGLN+LVDVGGGTG +A AIA FPH+ CTV D PHVVA L+
Sbjct: 173 SDSRLVISVLLKEGKGLFEGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDPPHVVAGLQ 232
Query: 241 SNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300
+ NL Y G+MFEAIPPADA+L+K +LH+W+DEECVKILK C++AI GKVIIID
Sbjct: 233 ESKNLNYFAGDMFEAIPPADAILLKWILHDWSDEECVKILKRCREAIPSKENGGKVIIID 292
Query: 301 IKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSL 360
+ M + DYK+ ETQL+ DM+MM+LV G ER+E EW KLF +AGFS YKIT +LG+RSL
Sbjct: 293 MIMMKNQGDYKSVETQLYFDMVMMILVTGRERDENEWEKLFLDAGFSHYKITPILGLRSL 352
Query: 361 IEVYP 365
IEVYP
Sbjct: 353 IEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20514367|gb|AAM23004.1|AF502433_1 orcinol O-methyltransferase [Rosa hybrid cultivar] gi|27527922|emb|CAD29458.1| orcinol O-methyltransferase [Rosa chinensis] gi|53748110|emb|CAH05077.1| orcinol O-methyltransferase 1 [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/363 (65%), Positives = 283/363 (77%), Gaps = 5/363 (1%)
Query: 3 LTKGKNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLT 62
L + +N S+ELL +QAH+WN+IFSF+NSMSLK AIQLGIPDII+ H PMTL++L +
Sbjct: 10 LNQKWSNGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTS 69
Query: 63 TLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFL 122
L IHPTK+ VY LMRILVHSGFFA +K S+ + EEGY LT AS+LLLKDHPLSL P+L
Sbjct: 70 ALPIHPTKSHSVYRLMRILVHSGFFAKKKLSKTD-EEGYTLTDASQLLLKDHPLSLTPYL 128
Query: 123 LAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASD 182
AMLDP+LT PW+ +STW QNDD T F HGM FWDY + + H FN+ MASD
Sbjct: 129 TAMLDPVLTNPWNYLSTWFQNDD----PTPFDTAHGMTFWDYGNHQPSIAHLFNDAMASD 184
Query: 183 TRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN 242
RL +S +I+ CK VFEGL +LVDVGGGTGTLA AIA FPHIECTV D PHVVADL+ +
Sbjct: 185 ARLVTSVIINDCKGVFEGLESLVDVGGGTGTLAKAIADAFPHIECTVLDLPHVVADLQGS 244
Query: 243 GNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302
NLKY GG+MFEA+PPAD VL+K +LH+W+DEEC+KIL+ + AI K GKVIIID+
Sbjct: 245 KNLKYTGGDMFEAVPPADTVLLKWILHDWSDEECIKILERSRVAITGKEKKGKVIIIDMM 304
Query: 303 MESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIE 362
ME++K D ++ ETQLF DMLMM LV G+ERNEKEWAKLF +AGFSDYKIT + G+RSLIE
Sbjct: 305 MENQKGDEESIETQLFFDMLMMALVGGKERNEKEWAKLFTDAGFSDYKITPISGLRSLIE 364
Query: 363 VYP 365
VYP
Sbjct: 365 VYP 367
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446489|ref|XP_002278190.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/353 (64%), Positives = 277/353 (78%), Gaps = 4/353 (1%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
S ELL + AHVWN+IF+F+NSMSLKCAI+LGIPDIIHNH KPMTL++L+ L ++P KT+
Sbjct: 9 STELLHAHAHVWNHIFNFINSMSLKCAIELGIPDIIHNHGKPMTLSELVAELPVNPEKTK 68
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTK 132
CVY LMR+LV SGFF ++ E+ QEEGY+LT AS+LLLKD PLS PFLLAMLDP+L
Sbjct: 69 CVYRLMRLLVQSGFFTRKRVQESGQEEGYVLTHASRLLLKDDPLSARPFLLAMLDPVLIT 128
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
PW VS W QNDD T F HG FWDYA E +LN+FFNE MASD RL +S LI
Sbjct: 129 PWQYVSAWFQNDD----PTPFDTAHGRTFWDYAGHEPKLNNFFNEAMASDARLVTSVLIK 184
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNM 252
CK +F GLN+LVDVGGGTGT+A AIA FPH+ CTV D PHVVA L+ + NL Y+ G+M
Sbjct: 185 DCKGIFVGLNSLVDVGGGTGTVARAIANAFPHLNCTVLDLPHVVAGLEGSKNLNYLAGDM 244
Query: 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312
FEAIPPADA+L+K +LH+WN +ECVKILK C+ AI K GKVIIID+ ME++KAD ++
Sbjct: 245 FEAIPPADAILLKWILHDWNHDECVKILKRCRDAIPSKEKGGKVIIIDMMMENQKADDES 304
Query: 313 TETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
ETQLF DMLMM+++ G+ERN K+W KLFF+AGFS YKIT +LG+RSLIEVYP
Sbjct: 305 IETQLFWDMLMMIVLTGQERNIKDWEKLFFDAGFSGYKITPMLGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|123718246|emb|CAJ65638.1| putative orcinol O-methyltransferase [Rosa hugonis] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/348 (66%), Positives = 274/348 (78%), Gaps = 5/348 (1%)
Query: 8 NNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIH 67
+N S+ELL +QAH+WN+IFSF+NSMSLK AIQLGIPDII+ H PMTL++L + L IH
Sbjct: 4 SNGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGCPMTLSELTSALPIH 63
Query: 68 PTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLD 127
PTK+ VY LMRILVHSGFFA +K S+ + EEGY LT AS+LLLKDHPLSL PFL AMLD
Sbjct: 64 PTKSHSVYRLMRILVHSGFFAKKKLSKTD-EEGYTLTDASQLLLKDHPLSLTPFLTAMLD 122
Query: 128 PILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTS 187
P+LTKPWH +STW QNDD T F HGM FWDY + + HFFN+ MA D RL +
Sbjct: 123 PVLTKPWHYLSTWFQNDD----PTPFDTAHGMTFWDYGNHQPSMAHFFNDAMACDARLVT 178
Query: 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKY 247
S +I CK VFEGL +LVDVGGGTGT+A AIA FPHIECTV D PHVVADL+ + NLKY
Sbjct: 179 SVIIDDCKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGSKNLKY 238
Query: 248 VGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307
GG+MFEA+PPAD VL+K +LH+WNDEECVKILK CK+AI K GKVIIID+ ME++K
Sbjct: 239 TGGDMFEAVPPADTVLLKWILHDWNDEECVKILKRCKEAITSKDKKGKVIIIDMIMENQK 298
Query: 308 ADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL 355
D ++ ETQLF DMLMM L+ G+ERNEKEWAKLF +AGFSDYKIT +L
Sbjct: 299 VDEESIETQLFFDMLMMALLTGKERNEKEWAKLFTDAGFSDYKITPIL 346
|
Source: Rosa hugonis Species: Rosa hugonis Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 365 | ||||||
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.969 | 0.967 | 0.483 | 2.8e-89 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.953 | 0.980 | 0.452 | 1e-75 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.950 | 0.945 | 0.402 | 3.3e-70 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.986 | 0.986 | 0.389 | 8e-69 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.936 | 0.982 | 0.425 | 7.2e-68 | |
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.961 | 0.983 | 0.388 | 1.9e-67 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.964 | 0.941 | 0.358 | 1.1e-57 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.980 | 0.937 | 0.306 | 1.2e-42 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.569 | 0.64 | 0.322 | 4.5e-38 | |
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.876 | 0.881 | 0.264 | 3.5e-27 |
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 177/366 (48%), Positives = 233/366 (63%)
Query: 8 NNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIH 67
N + ELL++QAHVWN+I+S++NSMSLKCAIQLGIPD IH H P+TL+QL L I+
Sbjct: 5 NGISSKQELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNIN 64
Query: 68 PTKTQCVYHLMRILVHSGFFALQKTS-------ENEQEEGYILTSASKLLLKDHPLSLAP 120
K+ ++ LMRILVHSGFF K E E+E+ Y LT AS+LLL+ PLS+AP
Sbjct: 65 KAKSHGLFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAP 124
Query: 121 FLLAMLDPILTKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMA 180
F LAM DP+ T+ WH +S W +N F +GM F +YAV + RLN FNE MA
Sbjct: 125 FALAMSDPVYTETWHHLSEWFRNDAVAA----FDTKYGMTFPEYAVADDRLNVLFNEAMA 180
Query: 181 SDTRLTSSALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLK 240
D +S L +C+++F+ A IA FP +ECTV D P+VV LK
Sbjct: 181 CDAGFVNSILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLK 240
Query: 241 SNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXX-XXXXXX 299
+ NL +V G+MF+ IP ADA+ +K +LH+WNDEECVKIL
Sbjct: 241 GSENLSFVSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILV 300
Query: 300 DIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRS 359
+I ME EK ++ TET+LF DM M+ ++ G+ER+EKEW KLFF+AGF++YKIT VLG+RS
Sbjct: 301 EIVMEDEKETHEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRS 360
Query: 360 LIEVYP 365
+IEV+P
Sbjct: 361 VIEVFP 366
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 161/356 (45%), Positives = 211/356 (59%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL--QIHPTK 70
S+E +QA +W+ SF+ S SLKCA++LGIPD I NH KP+TL++L L +HP+K
Sbjct: 5 SEEFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHPSK 64
Query: 71 TQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPIL 130
+Y LMR+L +GF + ++ + E E Y LT +S++LLK PL+L +L M DP+
Sbjct: 65 APFIYRLMRVLAKNGFCS-EEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPVQ 123
Query: 131 TKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSAL 190
K W +S W QN F HG NFW Y+ FFNE MASD++L S L
Sbjct: 124 LKAWESLSDWYQNEDDSSTA--FETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLL 181
Query: 191 IHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGG 250
I + K +FE A AIAK FP ++CTVFD PHVVA+L+S N+++V G
Sbjct: 182 IGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFVAG 241
Query: 251 NMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKADY 310
+MFE IP A+A+ +K +LH+WNDE+CVKIL D+ M S+K D
Sbjct: 242 DMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKGGKVIII--DMVMYSDKKDD 299
Query: 311 KTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLG-VRSLIEVYP 365
+TQ MDM M+V +ER EKEWA LF EAGFSDYKI L RSLIEVYP
Sbjct: 300 HLVKTQTSMDMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 145/360 (40%), Positives = 207/360 (57%)
Query: 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCV 74
EL +Q H++ ++++FV+SM+LK A++LGI D+IHNH KP+TL +L + L++HP+K +
Sbjct: 12 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADVIHNHGKPITLPELASALKLHPSKVGIL 71
Query: 75 YHLMRILVHSGFFALQ-------KTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLD 127
Y +R+L H+GFFA K E E+E Y LT SKLL+K P LA + L
Sbjct: 72 YRFLRLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALH 131
Query: 128 PILTKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLN--HFFNEGMASDTRL 185
P W W + F G +FWD+ +++ F E MA+D+++
Sbjct: 132 PSSLDMWRSSEKWFKEDKELTL---FESATGESFWDFLNKDSESGTLSMFQEAMAADSQM 188
Query: 186 TSSALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNL 245
AL +C+ VFE I ++FPH++CTVFDQP VV +L N NL
Sbjct: 189 FKLAL-KECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENL 247
Query: 246 KYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMES 305
K+VGG+MF++IPPADAVL+K VLH+WNDE +KIL DI ++
Sbjct: 248 KFVGGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISIDE 307
Query: 306 EKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
D + TE QL D++M+ + G+ER +KEW KL +AGFS YKIT + G +SLIEV+P
Sbjct: 308 ASGDRELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 144/370 (38%), Positives = 211/370 (57%)
Query: 1 MDLTKGKNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQL 60
MD + +++ EL Q+Q H++ ++++FV+SM+LK A++LGI D+IH+H KP+TL +L
Sbjct: 1 MDFSSSNGSEDT--ELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPEL 58
Query: 61 LTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENE---QEEGYILTSASKLLLKDHPLS 117
T L + P+K ++ +R+L H+GFFA S E +E Y LT SKLL+K +
Sbjct: 59 ATALNLRPSKIGVLHRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTC 118
Query: 118 LAPFLLAMLDPILTKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLN--HFF 175
LAP + L P W W F G +FW++ +ET + F
Sbjct: 119 LAPIVKGALHPSSLDMWRSSKKWFLEDNEELTL--FESATGESFWEFLNKETESDTLSMF 176
Query: 176 NEGMASDTRLTSSALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHV 235
E MA+D+ + AL +CK VFE I + FPH++CTVFDQP V
Sbjct: 177 QEAMAADSHMFKLAL-KECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQV 235
Query: 236 VADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXX 295
VA+L + NL +VGG+MF+++PPADAVL+K VLH+WNDE +KIL
Sbjct: 236 VANLTGDENLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGK 295
Query: 296 XXXXDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL 355
DI ++ D + TE +L D++M+ + G+ER +KEW KL ++AGFS YKIT +
Sbjct: 296 VIIIDISIDETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPIC 355
Query: 356 GVRSLIEVYP 365
G +SLIEV+P
Sbjct: 356 GFKSLIEVFP 365
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 151/355 (42%), Positives = 208/355 (58%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
S E+ +QAH + +FSF + SLKCA+QLGIPD IH+H KPM L+ L +L I+P+K
Sbjct: 5 SSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKAP 64
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTK 132
+Y LMRILV +G+F SE E++ Y LT ++LLLK+ PL+ +L + K
Sbjct: 65 YIYRLMRILVAAGYF-----SE-EEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELK 118
Query: 133 PWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
W+ +S W QN F HG NFWD+ E + F+ MA+D+ L S LI
Sbjct: 119 AWNAMSEWFQNEDLTA----FETAHGKNFWDFGA-EDKYGKNFDGVMAADSILVSKMLIP 173
Query: 193 KCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNM 252
+ +FE A AIAK FP ++CTVFD PHVVA+L+S NL++VGG+M
Sbjct: 174 EFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDM 233
Query: 253 FEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXD-IKMESEKADYK 311
FE IP A+A+L+K +LH+W DEECVK+L + + M+S+K + +
Sbjct: 234 FEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENE 293
Query: 312 -TTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+ Q+ D+ MMV +ER E+EWA LF EAGFS YKI ++ RS IEVYP
Sbjct: 294 EAVKAQISSDIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
|
|
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 139/358 (38%), Positives = 208/358 (58%)
Query: 9 NDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHP 68
N E+ Q QA ++ +I++F++SM LK ++L IP+IIHNH KP+T+++L++ L++
Sbjct: 6 NGRKPSEIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVPQ 65
Query: 69 TKTQCVYHLMRILVHSGFFALQKTSENEQE-EGYILTSASKLLLKDHPLSLAPFLLAMLD 127
TK V +MR + H+GFF + E ++E E Y LT+AS+LL+K L LAP + +LD
Sbjct: 66 TKAGNVQRIMRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLD 125
Query: 128 PILTKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTS 187
P L+ +HQ+ WI F + G +FW++ N FN+ MASD+++ +
Sbjct: 126 PTLSGSYHQLKKWIYEEDLTL----FGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMIN 181
Query: 188 SALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKY 247
AL C FE A I FP+++C VFD+P VV +L NL Y
Sbjct: 182 LAL-RDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSY 240
Query: 248 VGGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEK 307
VGG+MF+++P ADAVL+K +LHNW D +C +IL ++ + +
Sbjct: 241 VGGDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQ 300
Query: 308 ADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+++ T T+L MD+ M L G+ER+E+EW KLF EAGF DYKI+ + G SLIEVYP
Sbjct: 301 DEHEITGTKLLMDVNMACL-NGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 132/368 (35%), Positives = 201/368 (54%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
S ELLQ+ +WN +SF+ S++L A+ L I D IH TL+Q+L + + P K
Sbjct: 8 SRELLQAHVELWNQTYSFMKSVALAVALDLHIADAIHRRGGAATLSQILGEIGVRPCKLP 67
Query: 73 CVYHLMRILVHSGFFAL-QKTSE--NEQEEG----YILTSASKLLLKDHP---LSLAPFL 122
++ +MR+L SG F + Q ++E + + +G Y LT+AS LL+ SL+P L
Sbjct: 68 GLHRIMRVLTVSGTFTIVQPSAETMSSESDGREPVYKLTTASSLLVSSESSATASLSPML 127
Query: 123 LAMLDPILTKPWHQ-VSTWIQNXXXXXXXXX--FALPHGMNFWDYAVRETRLNHFFNEGM 179
+L P P ++ W ++ F L +G W+ R+ +N FN M
Sbjct: 128 NHVLSPFRDSPLSMGLTAWFRHDEDEQAPGMCPFTLMYGTTLWEVCRRDDAINALFNNAM 187
Query: 180 ASDTRLTSSALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHVVADL 239
A+D+ L+ + +VF AIA FP ++CTV D PHVVA
Sbjct: 188 AADSNFLMQILLKEFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDLPHVVAKA 247
Query: 240 KSN--GNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXXXX 297
S+ GN+++VGG+MFE+IPPA+ VL+K +LH+W+++EC+KIL
Sbjct: 248 PSSSIGNVQFVGGDMFESIPPANVVLLKWILHDWSNDECIKILKNCKQAIPSRDAGGKII 307
Query: 298 XXDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGV 357
D+ + S+ +D K ETQ+ D+ +M + G ER+E+EW K+F EAGF DYKI +LG+
Sbjct: 308 IIDVVVGSDSSDTKLLETQVIYDLHLMK-IGGVERDEQEWKKIFLEAGFKDYKIMPILGL 366
Query: 358 RSLIEVYP 365
RS+IE+YP
Sbjct: 367 RSIIELYP 374
|
|
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 115/375 (30%), Positives = 178/375 (47%)
Query: 3 LTKGKNNDN---ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNH--AKPMTL 57
L + K DN + DE ++ +W +F F + + KCAI L IP+ I NH ++P+TL
Sbjct: 10 LDRNKMEDNKRKVLDEEAKASLDIWKYVFGFADIAAAKCAIDLKIPEAIENHPSSQPVTL 69
Query: 58 NQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL--KDHP 115
+L + + P+ + +MR LVH G F T + GY+ T S+ L+ +
Sbjct: 70 AELSSAVSASPSHLR---RIMRFLVHQGIFKEIPTKDG-LATGYVNTPLSRRLMITRRDG 125
Query: 116 LSLAPFLLAMLDPILTKPWHQVSTWIQNXXXXXXXXXFALPHGMNFWDYAVRETRLNHFF 175
SLAPF+L P + PW ++S+ + + F HG + W +A L+
Sbjct: 126 KSLAPFVLFETTPEMLAPWLRLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMI 185
Query: 176 NEGMASDTRLTSSALIHKCKDVFEXXXXXXXXXXXXXXXASAIAKKFPHIECTVFDQPHV 235
NE MA D R + C +F+ + K+FP I+ FD PHV
Sbjct: 186 NEAMACDARRVVPRVAGACHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHV 245
Query: 236 VADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILXXXXXXXXXXXXXXX 295
+ + ++ V G+MF++IP DA+ IK VLH+W D++C+KIL
Sbjct: 246 IEVAEVLDGVENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPNIGKVL 305
Query: 296 XXXXDI-----KMESEKADYKTTETQLFMDMLMMVLVK-GEERNEKEWAKLFFEAGFSDY 349
I M ++ D K +L +DM+MM G+ER KEW + EAGF+ Y
Sbjct: 306 IVESVIGENKKTMIVDERDEKLEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARY 365
Query: 350 KITDVLGVRSLIEVY 364
++ D+ V+SLI Y
Sbjct: 366 EVRDIDDVQSLIIAY 380
|
|
| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 69/214 (32%), Positives = 103/214 (48%)
Query: 157 HGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEXXXXXXXXXXXXXXXAS 216
HG + W +A + NE MA D R + C+ +F+
Sbjct: 110 HGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGETMG 169
Query: 217 AIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEEC 276
+ K+FP I+ FD PHV+ + ++ V G+MF++IP +DAV+IK VLH+W D++C
Sbjct: 170 ILVKEFPWIKGFNFDLPHVIEVAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDKDC 229
Query: 277 VKILXXXXXXXXXXXXXXXXXXXDI-----KMESEKADYKTTETQLFMDMLMMVLVK-GE 330
+KIL I M +E+ D K +L +DM+MMV G+
Sbjct: 230 IKILKNCKEAVLPNIGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHTSTGK 289
Query: 331 ERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364
ER KEW + EAGF+ Y++ D V+SLI Y
Sbjct: 290 ERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323
|
|
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 89/336 (26%), Positives = 156/336 (46%)
Query: 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQI-HPTKTQCVYHLMRILVHSGFFAL--Q 90
M+LK A++L + +I+ + PM+ ++ + L +P + ++R+L +
Sbjct: 34 MALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNR 93
Query: 91 KTSENEQEEGYILTSASKLLLKDHP-LSLAPFLLAMLDPILTKPWHQVSTWIQNXXXXXX 149
K S + E Y L K L K+ +S+A L D +L + W+ + I +
Sbjct: 94 KLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIP-- 151
Query: 150 XXXFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEXXXXXXXXXX 209
F +GM+ ++Y + R N FN GM++ + +T ++ K FE
Sbjct: 152 ---FNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKG-FEGLTSLVDVGG 207
Query: 210 XXXXXASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLH 269
I K+P+++ FD PHV+ D S+ +++VGG+MF ++P DA+ +K + H
Sbjct: 208 GIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICH 267
Query: 270 NWNDEECVKILXXXXXXXXXXXXXXXXXXXDIKMESEKADYKTTETQLFMDMLMMVLVKG 329
+W+DE CVK L I E+ + T + + +D +M+ G
Sbjct: 268 DWSDEHCVKFLKNCYESLPEDGKVILAEC--ILPETPDSSLSTKQV-VHVDCIMLAHNPG 324
Query: 330 -EERNEKEWAKLFFEAGFSDYKIT-DVLGVRSLIEV 363
+ER EKE+ L +GF K+ D GV +LIE+
Sbjct: 325 GKERTEKEFEALAKASGFKGIKVVCDAFGV-NLIEL 359
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B0EXJ8 | HTOMT_CATRO | 2, ., 1, ., 1, ., 9, 4 | 0.5264 | 0.9616 | 0.9887 | N/A | no |
| Q6VMW0 | Q8OMT_MENPI | 2, ., 1, ., 1, ., 8, 8 | 0.5431 | 0.9506 | 0.9480 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 365 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 6e-95 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 1e-16 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 8e-11 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 4e-06 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 5e-05 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 9e-04 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 0.003 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 6e-95
Identities = 106/247 (42%), Positives = 149/247 (60%), Gaps = 11/247 (4%)
Query: 96 EQEEGYILTSASKLLLKDHPL-SLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFA 154
E Y LT ASKLL+K SLAP LL DP L + W + ++ F
Sbjct: 2 RGGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGG-----PPFE 56
Query: 155 LPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTL 214
GM F++Y + N FN MA+ +RL ++ + F GL++LVDVGGGTG L
Sbjct: 57 RAFGMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKIL-ETAFDFSGLSSLVDVGGGTGAL 115
Query: 215 ASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDE 274
A+AI + +PHI+ VFD PHV+AD S +++VGG+ FE++P ADA+L+K VLH+W+DE
Sbjct: 116 AAAIVRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDE 175
Query: 275 ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNE 334
+CVKILK C +A+ GKVI++++ + + D TE L +D+ M+VL G+ER E
Sbjct: 176 DCVKILKRCYEAL---PPGGKVIVVEMVLPEDPDDDLETE-VLLLDLNMLVLNGGKERTE 231
Query: 335 KEWAKLF 341
KEW KL
Sbjct: 232 KEWRKLL 238
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-16
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILV 82
M LKCAI+LGIPDII H KP++ ++L + L ++P + L+R+L
Sbjct: 1 MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 8e-11
Identities = 39/197 (19%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 169 TRLNHFFNEGM-ASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIEC 227
TR ++ + E + S+ + L+ + K +G+ ++DVGGG G +++A+ K FP ++
Sbjct: 119 TREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDS 176
Query: 228 TVFDQPHVVADLKSN-------GNLKYVGGNMF-EAIPPADAVLIKCVLHNWNDEECVKI 279
T+ + P + + N ++ + +++ E+ P ADAVL +L++ N++ +
Sbjct: 177 TILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIM 236
Query: 280 LKNCKKAIAINGKAGKVIIIDIKMESEKA---DYKTTETQLFMDMLMMVLVKGEERNEKE 336
K A+ G+++I+D+ ++ + DY + ++ M + +
Sbjct: 237 CKKAFDAMR---SGGRLLILDMVIDDPENPNFDYLSH----YILGAGMPFSVLGFKEQAR 289
Query: 337 WAKLFFEAGFSDYKITD 353
+ ++ G+ D +
Sbjct: 290 YKEILESLGYKDVTMVR 306
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-06
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 205 VDVGGGTGTLASAIAKKFPHIECTVFD-QPHVVA---------DLKSNGNLKYVGGNMFE 254
+D+G GTGTL A+ + P +E T D P + L ++ + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 255 -AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGK 292
D V+ VLH+ D +L+N ++ + G
Sbjct: 61 LDPGSFDVVVASNVLHHLADPR--AVLRNLRRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-05
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 205 VDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP----PA 259
+DVG GTG LA A+A++ T D P ++A + K+V G+ E +P
Sbjct: 1 LDVGCGTGLLAEALARRGGA-RVTGVDLSPEMLALARKRAPRKFVVGDA-EDLPFPDESF 58
Query: 260 DAVLIKCVLHNWND-----EECVKILK 281
D V+ VLH+ D E ++LK
Sbjct: 59 DVVVSSLVLHHLPDPERALREIARVLK 85
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-05
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN------GNLKYVGGNM--- 252
++D+G GTG+LA +A+ FP T D P ++ + N + +V G+
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63
Query: 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGK 292
+ + DAV I + +++L + G+
Sbjct: 64 LDLLEGFDAVFIGGGGGD-----LLELLDALASLLKPGGR 98
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 9e-04
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN------GNLKYVGGNMFE- 254
++D+G GTG LA A+A P T D P + + N++ + G+ E
Sbjct: 1 RVLDLGCGTGALALALA-SGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 255 ---AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301
A D ++ LH E+ + L+ ++ + K G V+++ +
Sbjct: 60 PPEADESFDVIISDPPLH-HLVEDLARFLEEARRLL----KPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 33/202 (16%)
Query: 161 FWDYAVRETRLNHFFNEG-MASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIA 219
FW Y +H N G D R AL + D+ + +VDVGGGTG I
Sbjct: 77 FWFYRFLSIVYDHIINPGHWTEDMR--DDAL--EPADLSDRNLKVVDVGGGTGFTTLGIV 132
Query: 220 KKFPHIECTVFDQ-PHVVADLKSNGNLK---YVGGNMFEAIP----PADAVLIKCVLHNW 271
K T+ DQ PH +A K LK + G+ E +P AD + + W
Sbjct: 133 KHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDA-EDLPFPTDYADRYVSAGSIEYW 191
Query: 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE-TQLFMDMLMMVLVKGE 330
D + + K+A + GK +I + T ++ F D+ M+
Sbjct: 192 PDPQ-----RGIKEAYRVLKIGGKACLIG-------PVHPTFWLSRFFADVWMLF----- 234
Query: 331 ERNEKEWAKLFFEAGFSDYKIT 352
E+E+ + F +AGF D K+
Sbjct: 235 -PKEEEYIEWFTKAGFKDVKLK 255
|
Length = 340 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.76 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.76 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.76 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.75 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.73 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.72 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.7 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.66 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.65 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.65 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.65 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.65 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.64 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.64 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.64 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.63 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.62 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.62 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.61 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.6 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.59 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.59 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.57 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.57 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.55 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.54 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.54 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.54 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.53 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.52 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.52 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.51 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.5 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.5 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.49 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.48 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.48 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.47 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.47 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.47 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.47 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.46 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.46 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.45 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.43 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.43 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.42 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.41 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.4 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.4 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.37 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.36 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.35 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.35 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.35 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.34 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.33 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.33 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.32 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.28 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.27 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.27 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.26 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.24 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.23 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.22 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.22 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.2 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.19 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.17 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.16 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.16 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.15 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.14 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.13 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.11 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.11 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.1 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.1 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.09 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.09 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.09 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.08 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.06 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.05 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.05 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.05 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.04 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.03 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.02 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.0 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.99 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.98 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.98 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.98 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.98 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.97 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.96 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.96 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.92 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.91 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.9 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.89 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.89 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.89 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.88 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.86 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.85 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.85 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.85 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.82 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.81 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.81 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.77 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.74 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.74 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.74 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.73 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.72 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.72 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.71 | |
| PLN02366 | 308 | spermidine synthase | 98.7 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.7 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.67 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.65 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.65 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.64 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.64 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.63 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.61 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.61 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.58 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.55 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.54 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.48 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.46 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.44 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.44 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.43 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.42 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.41 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.4 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.4 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.39 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.37 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.37 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.34 | |
| PLN02476 | 278 | O-methyltransferase | 98.32 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.3 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.28 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.28 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.27 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.25 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.24 | |
| PLN02823 | 336 | spermine synthase | 98.22 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.22 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.22 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.21 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.19 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.15 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.12 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.07 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.05 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.02 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.02 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.02 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.01 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.0 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.99 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.97 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.96 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.92 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.92 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.91 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.89 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.88 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.86 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.83 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.8 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.8 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.78 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.78 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.74 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.72 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.7 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.62 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.62 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.61 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.6 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.55 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.51 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.46 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.46 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.42 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.41 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.4 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.39 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.31 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.3 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.26 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.21 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.2 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.19 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 97.19 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.19 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.18 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.17 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.13 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.13 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.1 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.09 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.09 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.08 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.08 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.08 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.03 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.0 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.91 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.91 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.91 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.78 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.75 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.66 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.64 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.62 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.62 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.6 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.51 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.51 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.47 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.46 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 96.39 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 96.38 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.24 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.18 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 96.11 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.11 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 96.06 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.05 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 96.04 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 96.02 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 96.02 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.96 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 95.92 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.91 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 95.87 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 95.86 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.77 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 95.73 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.66 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.63 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.62 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.6 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 95.58 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 95.53 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 95.5 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 95.48 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.44 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 95.39 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.35 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.29 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 95.13 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.07 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.0 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 94.98 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 94.97 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 94.94 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.9 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.88 | |
| PHA00738 | 108 | putative HTH transcription regulator | 94.73 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 94.72 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 94.64 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 94.63 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 94.59 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 94.41 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 94.31 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.26 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.2 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 93.94 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 93.93 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 93.91 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 93.83 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.81 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.81 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 93.73 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 93.61 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 93.59 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.59 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 93.57 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 93.41 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.05 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.03 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 93.03 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.0 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 92.96 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 92.94 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 92.88 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 92.76 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 92.75 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 92.74 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 92.7 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 92.69 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 92.57 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.48 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 92.32 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 91.99 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 91.89 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 91.74 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 91.72 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 91.72 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.66 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 91.64 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 91.62 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 91.61 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 91.49 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 91.48 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 91.44 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 91.4 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 91.36 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 91.26 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.25 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 91.24 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 91.22 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 91.07 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 90.77 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 90.19 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 90.17 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 90.08 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 89.86 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 89.64 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 89.63 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 89.6 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 89.51 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 89.45 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 89.26 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 89.23 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 89.0 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 88.72 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.63 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 88.41 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 88.19 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 88.12 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 88.12 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 88.03 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 88.01 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 87.97 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 87.78 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 87.78 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 87.75 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.3 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 87.1 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 86.58 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 86.13 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 86.07 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 85.87 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 85.83 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 85.44 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 85.31 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 85.0 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 84.94 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 84.61 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 84.52 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 84.25 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 84.23 | |
| PF02319 | 71 | E2F_TDP: E2F/DP family winged-helix DNA-binding do | 84.17 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 83.92 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 83.75 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 83.71 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 83.39 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 82.92 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 82.57 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 82.49 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 82.37 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 82.28 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 82.27 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 82.18 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 82.16 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 82.04 | |
| COG2512 | 258 | Predicted membrane-associated trancriptional regul | 81.56 | |
| COG5631 | 199 | Predicted transcription regulator, contains HTH do | 81.52 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 81.21 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 81.13 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 80.84 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 80.56 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 80.34 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 80.18 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 80.02 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=303.28 Aligned_cols=333 Identities=31% Similarity=0.485 Sum_probs=287.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcC--CCCCCcchHHHHHHHHHhcCceeccccCC
Q 017835 17 LQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ--IHPTKTQCVYHLMRILVHSGFFALQKTSE 94 (365)
Q Consensus 17 ~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~--~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 94 (365)
.++..+++++++++...++|++|+||||||+|.++ ++ ..|||..+. ..|.++.+++|+||.|+++++++..-..
T Consensus 4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~- 79 (342)
T KOG3178|consen 4 NEASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG- 79 (342)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-
Confidence 45667899999999999999999999999999974 33 788888777 3444788999999999999999986421
Q ss_pred CCccceEecCccchhhhcCC-CCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHH
Q 017835 95 NEQEEGYILTSASKLLLKDH-PLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNH 173 (365)
Q Consensus 95 ~~~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 173 (365)
+ + .|.+++.++++.++. ..+++.++.........+.|..+.++++.+. .+|..++|...++|...+.....
T Consensus 80 -~-~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-----~~~~~~~G~~l~~~~~~~~~~~~ 151 (342)
T KOG3178|consen 80 -G-E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-----DAFATAHGMMLGGYGGADERFSK 151 (342)
T ss_pred -c-e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-----cCCccccchhhhhhcccccccHH
Confidence 1 2 799999999766433 3589999988878889999999999999987 68888999888999988888888
Q ss_pred HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccC-CCeEEEeCCC
Q 017835 174 FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-GNLKYVGGNM 252 (365)
Q Consensus 174 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~ 252 (365)
.++++|...+......+++.+. +++.....||+|+|.|..+..++..||+++++.+|+|.+++.+... ..|+.+.+|+
T Consensus 152 ~~~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm 230 (342)
T KOG3178|consen 152 DFNGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM 230 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc
Confidence 8999998887777666777666 4778899999999999999999999999999999999999998875 7799999999
Q ss_pred CCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC-CccCccchhhhhhhhhhhhhcc-Ccc
Q 017835 253 FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES-EKADYKTTETQLFMDMLMMVLV-KGE 330 (365)
Q Consensus 253 ~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~-~~~ 330 (365)
+++.|..|+|++.++||||+|++|+++|++|++.|+| +|+|++.|.+.++ ...+...+.....+|++|+... +|+
T Consensus 231 fq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gk 307 (342)
T KOG3178|consen 231 FQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGK 307 (342)
T ss_pred cccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccce
Confidence 9999999999999999999999999999999999999 9999999998886 3222111233457788888775 599
Q ss_pred ccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 331 ERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 331 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+|+.+|+..++.++||.+..+...+..+++|+++|
T Consensus 308 ert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 308 ERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred eccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999999999986
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=290.77 Aligned_cols=290 Identities=18% Similarity=0.334 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 31 VNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 31 ~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
..+.+|++|+++||||.|.+ +|.|++|||+++|+ +++.+++|||+|+++|+|++. +++|++|+.+..+
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~-------~~~y~~t~~~~~~ 69 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-------DGKWSLTEFADYM 69 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec-------CCcEecchhHHhh
Confidence 35789999999999999986 79999999999999 679999999999999999986 5899999999855
Q ss_pred hcCCCCC----hHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhh-cCccc
Q 017835 111 LKDHPLS----LAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMA-SDTRL 185 (365)
Q Consensus 111 ~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~ 185 (365)
..+++.. ..++..+. .......|.+|.++++++ ++|...++ +....++. ..|...|. .....
T Consensus 70 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~------~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~ 136 (306)
T TIGR02716 70 FSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ------KNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKF 136 (306)
T ss_pred ccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC------cccccccC-----CCCCCHHH-HHhHHHHHHhcchh
Confidence 5443311 11222222 111235678999999854 23332221 11111122 22333333 33333
Q ss_pred chHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC
Q 017835 186 TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP 257 (365)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~ 257 (365)
..+.+.+.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|++++.+|+++ ++|
T Consensus 137 ~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 137 AIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 3455666666 77889999999999999999999999999999999988887763 4689999999997 677
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhh-hhhhhhhccCccccCHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLF-MDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~t~~e 336 (365)
++|+|++++++|+|+++.+.++|++++++|+| ||+++|.|.+.++.... .+...... ....+. ..-...++.++
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~e 289 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENP-NFDYLSHYILGAGMP-FSVLGFKEQAR 289 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc-hhhHHHHHHHHcccc-cccccCCCHHH
Confidence 89999999999999999889999999999999 99999999988665422 11111111 111111 11122346899
Q ss_pred HHHHHHhcCCccceEE
Q 017835 337 WAKLFFEAGFSDYKIT 352 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~ 352 (365)
|.++|+++||+.+++.
T Consensus 290 ~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 290 YKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHcCCCeeEec
Confidence 9999999999987654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=283.78 Aligned_cols=235 Identities=36% Similarity=0.715 Sum_probs=204.0
Q ss_pred cceEecCccchhhhcCCC-CChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHH
Q 017835 98 EEGYILTSASKLLLKDHP-LSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFN 176 (365)
Q Consensus 98 ~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (365)
++.|++|+.|+.|..+++ .++..++.++..+..+..|.+|.+++++|. ++|+..+|.++|+++.++++..+.|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-----~~~~~~~g~~~~~~~~~~~~~~~~f~ 77 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-----PPFEKAFGTPFFEYLEEDPELAKRFN 77 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS------HHHHHHSS-HHHHHHCSHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-----CHHHHhcCCcHHHhhhhChHHHHHHH
Confidence 589999999997776665 568888877667778999999999999997 88999999899999999999999999
Q ss_pred HHhhcCcccch-HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCC
Q 017835 177 EGMASDTRLTS-SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA 255 (365)
Q Consensus 177 ~~m~~~~~~~~-~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~ 255 (365)
++|...+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.+|++++
T Consensus 78 ~~m~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~ 155 (241)
T PF00891_consen 78 AAMAEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDP 155 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC
T ss_pred HHHHhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhh
Confidence 99999887776 66777788 7888999999999999999999999999999999999999999899999999999998
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCC--cEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKA--GKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
+|.+|+|+++++||+|+++++.++|++++++|+| | |+|+|+|.+.++....+........+|++|+..++|++||
T Consensus 156 ~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt 232 (241)
T PF00891_consen 156 LPVADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERT 232 (241)
T ss_dssp CSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EE
T ss_pred hccccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcC
Confidence 8899999999999999999999999999999999 8 9999999999988766422222358999999988999999
Q ss_pred HHHHHHHHH
Q 017835 334 EKEWAKLFF 342 (365)
Q Consensus 334 ~~e~~~ll~ 342 (365)
.+||++||+
T Consensus 233 ~~e~~~ll~ 241 (241)
T PF00891_consen 233 EEEWEALLK 241 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=143.37 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=120.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++.+|||||||||..+..+++..+..+++++|. +.|++.+++ ...|+++.+|+.+ |+| +||+|.+++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 34789999999999999999999999999999999 999999885 2339999999999 888 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh-hhhcc------C-----------c
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML-MMVLV------K-----------G 329 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~------~-----------~ 329 (365)
|+++++. .+.|++++|+||| ||+++++|...+...... .....+.+. .+... + .
T Consensus 129 lrnv~d~--~~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~ 200 (238)
T COG2226 129 LRNVTDI--DKALKEMYRVLKP---GGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIR 200 (238)
T ss_pred hhcCCCH--HHHHHHHHHhhcC---CeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHH
Confidence 9999987 7899999999999 999999999887654321 111111111 11101 1 1
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCC-ceeEEE
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLG-VRSLIE 362 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~ 362 (365)
+..+.+++.++++++||+.+....... ...+..
T Consensus 201 ~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 201 RFPDQEELKQMIEKAGFEEVRYENLTFGIVALHR 234 (238)
T ss_pred hCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEE
Confidence 223889999999999999888665543 344433
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=146.74 Aligned_cols=160 Identities=20% Similarity=0.246 Sum_probs=119.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCC-CCC--CceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-AIP--PADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~~--~~D~i~ 263 (365)
..++.+|||||||+|.++..+++.+ |..+++++|+ +.|++.+++ ..+++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 6779999999 899988763 2479999999987 665 499999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh--h-hc-c-----------C
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM--M-VL-V-----------K 328 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~-~~-~-----------~ 328 (365)
+..++|+++++ .++|++++++||| ||++++.|...+......++ ...++.... . .. . -
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999999876 6889999999999 99999999876553221100 000111000 0 00 0 0
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEcCC-ceeEEEEe
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDVLG-VRSLIEVY 364 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~ 364 (365)
...++.+++.++++++||+.++.....+ ...+..++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 2345999999999999999998888754 45565554
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=150.29 Aligned_cols=161 Identities=19% Similarity=0.328 Sum_probs=81.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..++.+|||+|||||..+..+++.. |+.+++++|. +.|++.+++ ..+|+++.+|..+ |++ .||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5677899999999999999999874 6789999999 999999885 3589999999988 776 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh--hh--ccC------------cc
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM--MV--LVK------------GE 330 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~--~~~------------~~ 330 (365)
.+|++++. .+.|++++|+||| ||+++|+|...+...... .....++.... .. ..+ ..
T Consensus 125 glrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHH--HHHHH-----------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCCchhh--ceeeeeeccccccccccccccccccccccccccc
Confidence 99999987 6789999999999 999999999887653210 00111111000 00 001 11
Q ss_pred ccCHHHHHHHHHhcCCccceEEEcC-CceeEEEEeC
Q 017835 331 ERNEKEWAKLFFEAGFSDYKITDVL-GVRSLIEVYP 365 (365)
Q Consensus 331 ~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 365 (365)
..+.+++.++++++||+.++..+.. |...+..++|
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccCC
Confidence 2278999999999999999887774 4456655543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-18 Score=150.16 Aligned_cols=149 Identities=12% Similarity=0.152 Sum_probs=115.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~v 267 (365)
.+..+|||||||+|.++..+++.+ |+++++++|+ +.+++.+++ ..+++++.+|+.+ +.+.+|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 467899999999999999999874 7899999999 899988864 3478999999987 6678999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh------------------ccCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV------------------LVKG 329 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~------------------~~~~ 329 (365)
+||+++++...+|++++++|+| ||.+++.|.+.+....... ....+.... ...-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999988788999999999999 9999999987655332110 011110000 0112
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcC
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
...|.+++.++++++||+.+++....
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~ 229 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQC 229 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 34599999999999999987664443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=143.65 Aligned_cols=155 Identities=15% Similarity=0.241 Sum_probs=119.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~ 259 (365)
..++..+. +.+..+|||||||+|..+..+++.+ +++++++|+ +.+++.+++ ..++.++.+|+.+ +++ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 44566665 7788999999999999999998775 679999999 888887775 4579999999987 555 49
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..+++|++.++...+|++++++|+| ||++++.+.......... . ...... . .......+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~~~-~-~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKAYI-K-KRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHHHH-H-hcCCCCCCHHHHHH
Confidence 999999999999866678999999999999 999999998665432110 1 111110 0 01123458899999
Q ss_pred HHHhcCCccceEEEcC
Q 017835 340 LFFEAGFSDYKITDVL 355 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~ 355 (365)
+|+++||+.+.+....
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999888764
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=141.13 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=123.4
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-- 257 (365)
.++..+. ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3444555 5677899999999999999999885 6789999999 888877764 3579999999977 444
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhh-hhhhh---------------
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQ-LFMDM--------------- 321 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~-~~~d~--------------- 321 (365)
.||+|++..++|++++. .++|+++.++|+| ||++++.+...+.... +.... .++..
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKE 185 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHH
Confidence 49999999999998876 6899999999999 9999998875443211 10000 00000
Q ss_pred -hhhhccCccccCHHHHHHHHHhcCCccceEEEcC-CceeEEEEeC
Q 017835 322 -LMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL-GVRSLIEVYP 365 (365)
Q Consensus 322 -~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 365 (365)
...........+.+++.++|+++||+++++.... +..+++.++|
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 186 YSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000001223478999999999999999998886 6678888775
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=145.52 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=113.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK--FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~v 267 (365)
.+..+|||||||+|..+..+++. +|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 56789999999999999999884 68999999999 999998875 3489999999987 6667999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh------hh-------hccC-ccccC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML------MM-------VLVK-GEERN 333 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~------~~-------~~~~-~~~~t 333 (365)
+|++++++...++++++++|+| ||.+++.|.+........+. ....+.++. .. ...+ -...+
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 9999988778999999999999 99999999776544322110 000111110 00 0000 11238
Q ss_pred HHHHHHHHHhcCCccceEE
Q 017835 334 EKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~ 352 (365)
.++..++|+++||+.+..+
T Consensus 211 ~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 211 VETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHHcCchhHHHH
Confidence 8999999999999876543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=143.82 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=111.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 789999999 888877664 3579999999987 555 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccC-ccch-hhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKAD-YKTT-ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~-~~~~-~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
+||+++. .+++++++++|+| ||++++.++........ .... .....++-...........+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999886 6899999999999 99999988754322111 0010 00011111011001112348999999999999
Q ss_pred CccceEEEcC
Q 017835 346 FSDYKITDVL 355 (365)
Q Consensus 346 f~~~~~~~~~ 355 (365)
|.++++....
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999887664
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=139.76 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=110.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC--CCCceEEEe
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA--IPPADAVLI 264 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~~~~D~i~~ 264 (365)
..+++.++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+. .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 45666666 56779999999999999999999999999999999 889998874 5789999998763 235999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchh-h---hhhhhhh-hhhc-cCccccCHHHHH
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE-T---QLFMDML-MMVL-VKGEERNEKEWA 338 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~-~---~~~~d~~-~~~~-~~~~~~t~~e~~ 338 (365)
+.++||++++ .+++++++++|+| ||++++..+..... ....... . ..+.... .... ......+.+++.
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 169 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFDA-PSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYA 169 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcCC-hhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHH
Confidence 9999999876 6889999999999 99988864321110 0000000 0 0010000 0000 112345899999
Q ss_pred HHHHhcCCccce
Q 017835 339 KLFFEAGFSDYK 350 (365)
Q Consensus 339 ~ll~~aGf~~~~ 350 (365)
++|+++||++..
T Consensus 170 ~~l~~aGf~v~~ 181 (255)
T PRK14103 170 ELLTDAGCKVDA 181 (255)
T ss_pred HHHHhCCCeEEE
Confidence 999999998543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=138.44 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=109.7
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-Cc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~ 259 (365)
+...++ ...+.+|||||||+|.++..++..++. +++++|. +.++.+++. ..++.++.+|+.+ +.+ .|
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344454 234689999999999999999998765 6999998 555543221 3579999999877 544 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||..++ ..+|+++++.|+| ||.+++...+.+...... ......+..+ . .....++.+++.+
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~~--~--~~~~lps~~~l~~ 260 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAKM--R--NVYFIPSVPALKN 260 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhcC--c--cceeCCCHHHHHH
Confidence 999999999999887 6789999999999 999988766655443221 1011111111 0 0012358999999
Q ss_pred HHHhcCCccceEEEc
Q 017835 340 LFFEAGFSDYKITDV 354 (365)
Q Consensus 340 ll~~aGf~~~~~~~~ 354 (365)
+++++||+++++...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999999988765
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=117.93 Aligned_cols=98 Identities=24% Similarity=0.463 Sum_probs=83.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCC-CC-C-CCCceEEEecc-c
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNM-FE-A-IPPADAVLIKC-V 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~-~~-~-~~~~D~i~~~~-v 267 (365)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+ .. + .++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999999999999999999999 888888774 68999999999 33 2 33699999999 6
Q ss_pred cccCCh-hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWND-EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+|++.. ++..++|+++++.|+| ||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 665543 5778999999999999 88888865
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=138.20 Aligned_cols=140 Identities=29% Similarity=0.425 Sum_probs=111.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~ 271 (365)
.+..+|||||||+|.++..+++..+..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 4568999999999999999999888889999999 888888775 3578999999987 554 49999999999999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
+++ ..+|++++++|+| ||++++++...+.... .....+..+ ...+.+|+.++|+++||+.+++
T Consensus 192 ~d~--~~~L~e~~rvLkP---GG~LvIi~~~~p~~~~------~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDP--QRGIKEAYRVLKI---GGKACLIGPVHPTFWL------SRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCH--HHHHHHHHHhcCC---CcEEEEEEecCcchhH------HHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 987 5789999999999 9999988765432110 001111111 1248899999999999999988
Q ss_pred EEcC
Q 017835 352 TDVL 355 (365)
Q Consensus 352 ~~~~ 355 (365)
....
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 8764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=136.19 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=108.8
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc-------cCCCeEEEeCCCCC-CC-CCc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK-------SNGNLKYVGGNMFE-AI-PPA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~-~~~ 259 (365)
++..+. ...+++|||||||+|.++..++..++. +++++|. +.++.+++ ...++.+...++.+ +. ..|
T Consensus 113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 444444 455689999999999999999988654 7999998 65655432 14678888888766 32 369
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||+.++ ...|++++++|+| ||.|++.+.+.+...... ......+.. +. ......+..++.+
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~k--~~--nv~flpS~~~L~~ 259 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYAK--MK--NVYFIPSVSALKN 259 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHHh--cc--ccccCCCHHHHHH
Confidence 999999999999887 6789999999999 999999877665432211 000011110 00 0012348899999
Q ss_pred HHHhcCCccceEEEc
Q 017835 340 LFFEAGFSDYKITDV 354 (365)
Q Consensus 340 ll~~aGf~~~~~~~~ 354 (365)
+++++||+.+++...
T Consensus 260 ~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 260 WLEKVGFENFRILDV 274 (314)
T ss_pred HHHHCCCeEEEEEec
Confidence 999999999988765
|
Known examples to date are restricted to the proteobacteria. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.3e-15 Score=130.00 Aligned_cols=166 Identities=24% Similarity=0.319 Sum_probs=121.6
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-- 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-- 257 (365)
++..+. ..+..+|||||||+|.++..++..+| ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 344444 34668999999999999999999987 789999999 777777764 2568999999987 333
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-----hccC----
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-----VLVK---- 328 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~---- 328 (365)
.||+|++.+++|++++. ..+|+++.++|+| ||++++++...+..... ......+..... ...+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAEA 192 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcHH
Confidence 59999999999998876 6889999999999 99999998866543211 000000000000 0000
Q ss_pred --------ccccCHHHHHHHHHhcCCccceEEEcC-CceeEEEEeC
Q 017835 329 --------GEERNEKEWAKLFFEAGFSDYKITDVL-GVRSLIEVYP 365 (365)
Q Consensus 329 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 365 (365)
...++.++|.++|+++||+++.+.... +...++.+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 193 YSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123478999999999999999998864 5678888764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=144.80 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=117.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~ 258 (365)
..+++.+. .+++.+|||||||+|..+..+++.+ +++++++|+ +.+++.+++ ..+++++.+|+.+ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34555555 5677899999999999999998876 789999999 788887764 3579999999987 555 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++..+++|++++ ..+|++++++|+| ||++++.++......... ....++ . ..+...++.+++.
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~---~--~~g~~~~~~~~~~ 399 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEYI---K--QRGYDLHDVQAYG 399 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHHH---H--hcCCCCCCHHHHH
Confidence 9999999999999887 6899999999999 999999988764422211 111111 1 1234566899999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
++++++||+++.+....
T Consensus 400 ~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 400 QMLKDAGFDDVIAEDRT 416 (475)
T ss_pred HHHHHCCCeeeeeecch
Confidence 99999999998776543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=128.27 Aligned_cols=160 Identities=20% Similarity=0.211 Sum_probs=119.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
..++.+|||+|||+|..+..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|+++.++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999999886 79999999 777777664 3578999999987 443 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc-----------------Cccc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV-----------------KGEE 331 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~~ 331 (365)
|+.++. ..+++++++.|+| ||++++.+...+.... +......+...+.... ....
T Consensus 117 ~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (223)
T TIGR01934 117 RNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANAL---LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF 188 (223)
T ss_pred CCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchh---hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhC
Confidence 988876 6899999999999 9999999876544321 1000000000000000 0123
Q ss_pred cCHHHHHHHHHhcCCccceEEEcCCc-eeEEEEeC
Q 017835 332 RNEKEWAKLFFEAGFSDYKITDVLGV-RSLIEVYP 365 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 365 (365)
.+.++|.++|+++||+++++.+..+. ..+++++|
T Consensus 189 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 189 PSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 47899999999999999999888665 67877775
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=131.27 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=107.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEeccccccC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNW 271 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~ 271 (365)
++|||||||+|..+..+++.+|+++++++|+ +.+++.+++ ..+++++..|+.+ +.+ .||+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777777664 4688999999866 444 59999999999999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
++. ..+|++++++|+| ||++++.+.......... . .. ......+..+|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~--~~--------~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE---H--EE--------TTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc---c--cc--------cccccCCHHHHHHHHHHCCCeEEEe
Confidence 875 6899999999999 999999987543211100 0 00 0111348899999999999999988
Q ss_pred EEcC
Q 017835 352 TDVL 355 (365)
Q Consensus 352 ~~~~ 355 (365)
....
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7764
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=123.90 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=97.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCCCceEEEeccccccCCh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIPPADAVLIKCVLHNWND 273 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~~D~i~~~~vlh~~~~ 273 (365)
..+..+|||||||+|.++..+.+. +.+++++|+ +.+++. ..+.....+... +...||+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 467889999999999999999666 349999999 777776 223333322223 2236999999999999997
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc--cCccccCHHHHHHHHHhcCCccce
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL--VKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+ ..+|+++++.|+| ||.+++.++........ ....+..... .....++.++|+++++++||++++
T Consensus 94 ~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 P--EEFLKELSRLLKP---GGYLVISDPNRDDPSPR-------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHCEEE---EEEEEEEEEBTTSHHHH-------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred H--HHHHHHHHHhcCC---CCEEEEEEcCCcchhhh-------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6 7899999999999 89999988876431110 1111111111 234567999999999999999875
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=124.58 Aligned_cols=138 Identities=25% Similarity=0.415 Sum_probs=102.2
Q ss_pred cCCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC-CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIA-KKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP-PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~-~~D~i~~~~ 266 (365)
+...+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ .+++++..+|+.+ + ++ .||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 456899999999999999999 5588999999999 999998875 4589999999999 4 43 699999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhh-hhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQL-FMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
++|++++. ..+|+++.+.|++ +|.+++.+....+..... ...... ......+. ..+. +.++|..+|+++|
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMNLYSEVWSMI-YIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHHHHHHHHHHC-C-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHHHHHHHhhhh-hccc--CHHHHHHHHHhcC
Confidence 99999987 6889999999999 899999988732221110 100001 01111110 1112 7889999999988
|
... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=133.40 Aligned_cols=159 Identities=12% Similarity=0.129 Sum_probs=111.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++++. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45677777 8999999999999999999999998 899999999 777776653 578999999987643489
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-hccCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-VLVKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~t~~e~~ 338 (365)
|.|++..++.|+..+....+++++.+.|+| ||++++............ ......++... ...+|...+.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHH
Confidence 999999999999988889999999999999 999988777765543211 00000122111 12467777999999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
..++++||++..+...+
T Consensus 203 ~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHTT-EEEEEEE-H
T ss_pred HHHhcCCEEEEEEEEcC
Confidence 99999999998887664
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=125.06 Aligned_cols=140 Identities=18% Similarity=0.207 Sum_probs=106.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-~ 258 (365)
+.+++.+. ..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 45555565 455689999999999999999986 579999999 888887764 2458888899876 444 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++..++|++++++...++++++++|+| ||++++++....++.... . . .....+.+|+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~---~-----~-------~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---V-----G-------FPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC---C-----C-------CCCccCHHHHH
Confidence 9999999999999888889999999999999 999887765543322110 0 0 01124788898
Q ss_pred HHHHhcCCccceE
Q 017835 339 KLFFEAGFSDYKI 351 (365)
Q Consensus 339 ~ll~~aGf~~~~~ 351 (365)
++++ ||+++..
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 8887 8987665
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=137.34 Aligned_cols=148 Identities=15% Similarity=0.117 Sum_probs=106.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
++.+|||||||+|.++..+++. +.+++++|. +.+++.++. ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4579999999999999988864 789999999 888888774 2479999999866 433 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh-ccCccccCHHHHHHHHHhcCCc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV-LVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
||++++ ..+|++++++|+| ||.+++......................+.-.. ....+.++.+|+.++|+++||+
T Consensus 209 eHv~d~--~~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 999988 6899999999999 899998875432110000000000001110000 0012356999999999999999
Q ss_pred cceEEEc
Q 017835 348 DYKITDV 354 (365)
Q Consensus 348 ~~~~~~~ 354 (365)
++++.-+
T Consensus 284 i~~~~G~ 290 (322)
T PLN02396 284 VKEMAGF 290 (322)
T ss_pred EEEEeee
Confidence 9888554
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=130.86 Aligned_cols=146 Identities=21% Similarity=0.351 Sum_probs=111.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
++++.+|||||||+|..+..+++. .+..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567889999999999988877765 46678999999 888888875 3589999999877 554 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
++|++++. .++|+++.++|+| ||++++.+......... . ...+..+.....+...+.++|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPE----E--IRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCH----H--HHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99988776 6789999999999 99999998876442211 1 111112221123445688999999999999
Q ss_pred ccceEEEc
Q 017835 347 SDYKITDV 354 (365)
Q Consensus 347 ~~~~~~~~ 354 (365)
..+++...
T Consensus 224 ~~v~i~~~ 231 (272)
T PRK11873 224 VDITIQPK 231 (272)
T ss_pred CceEEEec
Confidence 98877443
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-15 Score=131.20 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=106.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--CCC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--AIP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~~--~~D~i~~~~ 266 (365)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 578999999 889988874 3578999999865 232 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch-hhhhh-hhhhh---hhccCccccCHHHHHHHH
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT-ETQLF-MDMLM---MVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-~~~~~-~d~~~---~~~~~~~~~t~~e~~~ll 341 (365)
++||++++ ..+|+++.++|+| ||.+++............... ..... ..+.. .........+.+++.+++
T Consensus 121 vl~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 99999887 5789999999999 999988755432110000000 00000 00000 000112235889999999
Q ss_pred HhcCCccceEEEcCCc
Q 017835 342 FEAGFSDYKITDVLGV 357 (365)
Q Consensus 342 ~~aGf~~~~~~~~~~~ 357 (365)
+++||+++.+.-+..+
T Consensus 196 ~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 196 EEAGWQIMGKTGVRVF 211 (255)
T ss_pred HHCCCeEeeeeeEEEE
Confidence 9999999876655443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=121.89 Aligned_cols=147 Identities=23% Similarity=0.288 Sum_probs=111.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHHHhccc---------CCCeEEEeCCCCC-CCC--C
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH------IECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-AIP--P 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~~--~ 258 (365)
.....++||++||||..+..+++.-+. .++++.|+ |+|+..+++ ..++.++++|..+ |+| .
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 345699999999999999999998766 78999999 999998774 4569999999998 888 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh---------------h
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML---------------M 323 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---------------~ 323 (365)
+|.|++..-+-+|++. .+.|++++|+||| ||++.++|+.--+......+ .....++.. .
T Consensus 178 ~D~yTiafGIRN~th~--~k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~f-y~~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHI--QKALREAYRVLKP---GGRFSCLEFSKVENEPLKWF-YDQYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred ceeEEEecceecCCCH--HHHHHHHHHhcCC---CcEEEEEEccccccHHHHHH-HHhhhhhhhchhhHhhhhhHhhhhh
Confidence 9999999999999998 7889999999999 99999999855442111000 000111110 0
Q ss_pred hhccCccccCHHHHHHHHHhcCCccce
Q 017835 324 MVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 324 ~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+...-.+..+.++++.+.+++||+.+.
T Consensus 252 LveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 101112233889999999999999886
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=127.26 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=126.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++++. ++++.+|||||||-|.+++.+++.+ +++++++++ +++.+.+++ ..++++...|..+-.+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 45677787 8999999999999999999999999 899999999 777777664 458999999987755559
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-hccCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-VLVKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~t~~e~~ 338 (365)
|-|++..+++|+..+.-..+|+++++.|+| ||++++.....++.... ...++... ...+|..++..++.
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~ 208 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEIL 208 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHH
Confidence 999999999999998889999999999999 99999988877664431 11111111 13578888999999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
+..+++||.+..+..+.
T Consensus 209 ~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 209 ELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHhcCcEEehHhhhc
Confidence 99999999988776654
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-14 Score=125.33 Aligned_cols=106 Identities=18% Similarity=0.337 Sum_probs=91.1
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCC--CCceEE
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAI--PPADAV 262 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~--~~~D~i 262 (365)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.++.+|+.+.. ..||+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 345666666 67789999999999999999999999999999999 888988876 567899999987632 369999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++..++|++++. ..+|++++++|+| ||.+++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999999988876 6899999999999 8988875
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=123.26 Aligned_cols=156 Identities=20% Similarity=0.290 Sum_probs=111.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--Cc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~ 259 (365)
+++.+. ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++..+|+.. +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344455 6778899999999999999999987 7889999999 777776654 4678999999876 444 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc-hhhhhhhhhhhhhccCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT-TETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
|+|++..+++|+++. ..++++++++|+| ||.+++.++........... ...........- ......+..+|.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 999999999999887 6789999999999 99999988643221111000 001111111110 112234567899
Q ss_pred HHHHhcCCccceEEEc
Q 017835 339 KLFFEAGFSDYKITDV 354 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~ 354 (365)
++++++||+.+++...
T Consensus 162 ~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 162 GLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHcCCCceeEEEE
Confidence 9999999998766543
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=121.70 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=116.2
Q ss_pred hhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhc
Q 017835 161 FWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADL 239 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 239 (365)
.|+.++..++....+...|..........+++.+.....+..+|||||||+|.++..+++. +.+++++|. +.++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 3444444433334444433222222223333333311245789999999999999999876 568999999 8888887
Q ss_pred cc-------CCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc
Q 017835 240 KS-------NGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312 (365)
Q Consensus 240 ~~-------~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 312 (365)
++ ..++++..+|+.+....||+|++..+++|++.+....+++++.+.+++ + .++.+.+ .... .
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~---~-~~i~~~~---~~~~---~ 163 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE---R-VIFTFAP---KTAW---L 163 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC---C-EEEEECC---CchH---H
Confidence 64 248999999987744679999999999999887778899999999886 4 3333221 1100 0
Q ss_pred hhhhhhhhhhhhhc---cCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 313 TETQLFMDMLMMVL---VKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 313 ~~~~~~~d~~~~~~---~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
.....+.-..... ..-..++.+++.++++++||+++......
T Consensus 164 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 164 -AFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred -HHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 0000111000000 11123489999999999999999887654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=118.69 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=103.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~ 259 (365)
..+.+.+. ..+..+|||+|||+|..+..++++ +.+++++|. +.+++.+++ .-++.+...|+.. +.+ .|
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 34555555 445679999999999999999986 579999999 888887653 2246777778765 333 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++|+++.+....++++++++|+| ||++++++.......... . ......+.+|+.+
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~---~------------~~~~~~~~~el~~ 157 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCH---M------------PFSFTFKEDELRQ 157 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCC---C------------CcCccCCHHHHHH
Confidence 999999999999888888999999999999 999888776543321110 0 0011348889988
Q ss_pred HHHhcCCccceEE
Q 017835 340 LFFEAGFSDYKIT 352 (365)
Q Consensus 340 ll~~aGf~~~~~~ 352 (365)
+|. +|+++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 886 47776655
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-14 Score=106.27 Aligned_cols=88 Identities=26% Similarity=0.479 Sum_probs=75.7
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHH
Q 017835 205 VDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECV 277 (365)
Q Consensus 205 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~ 277 (365)
||+|||+|..+..+++. +..+++++|. +.+++.+++ ..++.++.+|+.+ +++ .||+|++.+++||+++. .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~--~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP--E 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH--H
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCH--H
Confidence 79999999999999998 8899999999 888888876 5667799999988 666 49999999999999444 8
Q ss_pred HHHHHHHHhcccCCCCcEEEE
Q 017835 278 KILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 278 ~~L~~i~~~L~p~~~gG~lli 298 (365)
+++++++|+||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 999999999999 888875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=115.78 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=123.1
Q ss_pred cCCC-eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc----c--CCCe-EEEeCCCCCC---CC--------C
Q 017835 199 EGLN-TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK----S--NGNL-KYVGGNMFEA---IP--------P 258 (365)
Q Consensus 199 ~~~~-~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~~i-~~~~~d~~~~---~~--------~ 258 (365)
.... +|||||+|||..+..+++.+|+++..-.|. +....... . .+++ .-+..|+.++ .+ .
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3334 599999999999999999999999888887 33322222 1 2222 2234566552 21 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc-cCccccCHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL-VKGEERNEKEW 337 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~t~~e~ 337 (365)
||+|++.+++|-.+.+.+..+++.+.++|+| ||.|+++-+...+....+ .....||-..... .....|+.+++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v 176 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDV 176 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHH
Confidence 9999999999999999999999999999999 999999999887765432 3334566555443 34677899999
Q ss_pred HHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 338 AKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.++.+++||+..+++.+|....+++++|
T Consensus 177 ~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 177 EALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 9999999999999999999877777665
|
The function of this family is unknown. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.9e-14 Score=135.74 Aligned_cols=143 Identities=19% Similarity=0.273 Sum_probs=108.1
Q ss_pred CChhHHHhhCchHHHHHHHHhhcCccc--chHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH
Q 017835 159 MNFWDYAVRETRLNHFFNEGMASDTRL--TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHV 235 (365)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 235 (365)
..+|+++...++..+.|...|...... ........++ ..++.+|||||||+|..+..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 367888887777777776555432211 1111122233 34678999999999999999999999999999999 788
Q ss_pred HHhccc-----CCCeEEEeCCCCC-C--CC--CceEEEeccccccC-----------ChhHHHHHHHHHHHhcccCCCCc
Q 017835 236 VADLKS-----NGNLKYVGGNMFE-A--IP--PADAVLIKCVLHNW-----------NDEECVKILKNCKKAIAINGKAG 294 (365)
Q Consensus 236 ~~~a~~-----~~~i~~~~~d~~~-~--~~--~~D~i~~~~vlh~~-----------~~~~~~~~L~~i~~~L~p~~~gG 294 (365)
++.+++ ..++.++.+|+.+ + ++ .||+|+++.++|+| +++...++|++++++||| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 888764 2467888899876 3 33 49999999999986 245678999999999999 99
Q ss_pred EEEEEeeecCCC
Q 017835 295 KVIIIDIKMESE 306 (365)
Q Consensus 295 ~lli~e~~~~~~ 306 (365)
++++.|.+.++.
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999999766543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=114.86 Aligned_cols=150 Identities=19% Similarity=0.126 Sum_probs=109.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeE-EEeCCCCC-C-CC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLK-YVGGNMFE-A-IP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~-~~~~d~~~-~-~~--~~D~i~~~~ 266 (365)
+....+|+||||+|..-.. -.--|.+++|.+|. +.|.+.+.+ ..++. |+.++..+ + .+ +||+|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 4556889999999987432 22236889999999 777776653 45566 78887776 4 34 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+|.-..++ ++.|++++++|+| ||+++++|++..+.+... .......+......+.|+..|.+.|+ .|+++-|
T Consensus 154 vLCSve~~--~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n--~i~q~v~ep~~~~~~dGC~ltrd~~e-~Leda~f 225 (252)
T KOG4300|consen 154 VLCSVEDP--VKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWN--RILQQVAEPLWHLESDGCVLTRDTGE-LLEDAEF 225 (252)
T ss_pred EEeccCCH--HHHHHHHHHhcCC---CcEEEEEecccccchHHH--HHHHHHhchhhheeccceEEehhHHH-Hhhhccc
Confidence 99754554 8999999999999 999999999987765431 12223444444444668888888884 5688899
Q ss_pred ccceEEEcCCc
Q 017835 347 SDYKITDVLGV 357 (365)
Q Consensus 347 ~~~~~~~~~~~ 357 (365)
+..+....+.+
T Consensus 226 ~~~~~kr~~~~ 236 (252)
T KOG4300|consen 226 SIDSCKRFNFG 236 (252)
T ss_pred ccchhhcccCC
Confidence 98887777544
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=118.76 Aligned_cols=150 Identities=21% Similarity=0.182 Sum_probs=101.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CC--CCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AI--PPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~--~~~D~i~~~~v 267 (365)
.+..+|||||||+|.++..|++. .|+.+++++|+ +.+++.+++ ..++++...+... +. ..||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 56689999999999998888764 46679999999 999988875 2456666554433 22 25999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccC-----ccccCHHHHHHHHH
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK-----GEERNEKEWAKLFF 342 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~t~~e~~~ll~ 342 (365)
+||+++++..++|++++++++ |.+++.+...+...... +........-....... .+.++.+|+.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 999999887899999999986 56666666544211100 00000000000000011 23459999999999
Q ss_pred hcCCccceEEEcC
Q 017835 343 EAGFSDYKITDVL 355 (365)
Q Consensus 343 ~aGf~~~~~~~~~ 355 (365)
+ ||++...++..
T Consensus 213 ~-Gf~~~~~~~~~ 224 (232)
T PRK06202 213 Q-GWRVERQWPFR 224 (232)
T ss_pred C-CCeEEecccee
Confidence 9 99987776654
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=114.67 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=127.6
Q ss_pred HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCC
Q 017835 174 FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGN 251 (365)
Q Consensus 174 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d 251 (365)
.|.++-...++.. .+++..++ ..+..+|+|+|||+|..+..|++++|+..++|+|- +.|++.|++ ..+++|..+|
T Consensus 7 ~Yl~F~~eRtRPa-~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aD 83 (257)
T COG4106 7 QYLQFEDERTRPA-RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEAD 83 (257)
T ss_pred HHHHHHHhccCcH-HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceeccc
Confidence 3444444555443 56888888 88899999999999999999999999999999998 999999876 7899999999
Q ss_pred CCCCCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhh--hhhhhhhhc-
Q 017835 252 MFEAIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQL--FMDMLMMVL- 326 (365)
Q Consensus 252 ~~~~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~--~~d~~~~~~- 326 (365)
+.+-.| +.|+++++.+||-++|. .++|.++...|.| ||.|.+.=+..-+............ -+...+...
T Consensus 84 l~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~ 158 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRG 158 (257)
T ss_pred HhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEECCCccCchhHHHHHHHHhcCchhhhhCccc
Confidence 988444 69999999999988887 7899999999999 8988886443222211100000000 011111110
Q ss_pred -cCccccCHHHHHHHHHhcCCccceEEEc------CCceeEEEEe
Q 017835 327 -VKGEERNEKEWAKLFFEAGFSDYKITDV------LGVRSLIEVY 364 (365)
Q Consensus 327 -~~~~~~t~~e~~~ll~~aGf~~~~~~~~------~~~~~vi~~~ 364 (365)
......+...+-++|...+-++ .+++. ++...|++..
T Consensus 159 ~~r~~v~s~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 159 LTRAPLPSPAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred cccCCCCCHHHHHHHhCccccee-eeeeeeccccCCCccchhhhe
Confidence 1223348899999999887664 34443 3345555543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-14 Score=122.49 Aligned_cols=143 Identities=19% Similarity=0.221 Sum_probs=107.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CC----CeEEEeCCCCCCCCCceEEEeccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NG----NLKYVGGNMFEAIPPADAVLIKCV 267 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----~i~~~~~d~~~~~~~~D~i~~~~v 267 (365)
+++|||||||+|.++..|++. +.+++++|+ +.+++.|++ .. |+++.+.|.....+.||+|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999998 589999999 889998875 22 467777777665667999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc-----CccccCHHHHHHHHH
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV-----KGEERNEKEWAKLFF 342 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~t~~e~~~ll~ 342 (365)
++|..|+ ..+++.+.+.|+| +|+++|......-..... ...+.+....... ..+..+.+++.+++.
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~~~----~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~ 238 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSFAG----TIFLAEIVLRIVPKGTHTWEKFINPEELTSILN 238 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHhhc----cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHH
Confidence 9999988 7899999999999 899999876553332211 1111111122111 234459999999999
Q ss_pred hcCCccceEEEc
Q 017835 343 EAGFSDYKITDV 354 (365)
Q Consensus 343 ~aGf~~~~~~~~ 354 (365)
.+|+++..+.-.
T Consensus 239 ~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 239 ANGAQVNDVVGE 250 (282)
T ss_pred hcCcchhhhhcc
Confidence 999987766443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-14 Score=121.83 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=103.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCC--eEEEeCCCCC-C--CCCceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGN--LKYVGGNMFE-A--IPPADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~--i~~~~~d~~~-~--~~~~D~i~~~~vlh~ 270 (365)
++.+|||||||.|.++..|++. +.+|+++|+ +..++.|+. .+. +.+.+....+ . ...||+|+|..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 5789999999999999999998 589999999 888998884 333 3355555554 2 246999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-hccCccccCHHHHHHHHHhcCCccc
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-VLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
.+++ ..+++++.+.+|| ||.+++......-...............+.-. ...-.+...++|+..++.++|+.+.
T Consensus 137 v~dp--~~~~~~c~~lvkP---~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 137 VPDP--ESFLRACAKLVKP---GGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred cCCH--HHHHHHHHHHcCC---CcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 9999 5699999999999 88888877653222110000000000100000 0011344588999999999999877
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
....+
T Consensus 212 ~~~g~ 216 (243)
T COG2227 212 DRKGL 216 (243)
T ss_pred eecce
Confidence 76555
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-13 Score=117.47 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=105.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChhH
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEE 275 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~ 275 (365)
+..+|||||||+|.++..+++.+ +.+++++|. +.|++.+++. ..++.+|+.+ |++ .||+|++..++||+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46899999999999999999987 579999999 9999998753 3457788877 665 49999999999999887
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh---hhhccCc-------------cccCHHHHHH
Q 017835 276 CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML---MMVLVKG-------------EERNEKEWAK 339 (365)
Q Consensus 276 ~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~-------------~~~t~~e~~~ 339 (365)
.+.|++++++||| . +.++|...++...... ....++... +.....+ ...+.+++.+
T Consensus 127 -~~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~--~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 127 -EKVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRK--YLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred -HHHHHHHHHHhcC---c--eEEEEeCCCCcHHHHH--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 6789999999998 4 3344544333211000 000111100 0000111 1238899999
Q ss_pred HHHhcCCccceEEEcC-CceeEEEEeC
Q 017835 340 LFFEAGFSDYKITDVL-GVRSLIEVYP 365 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~-~~~~vi~~~~ 365 (365)
+++++| ..++...+. |...+..++|
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEEEee
Confidence 999984 667777774 4466666553
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-13 Score=117.98 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=103.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CCC--CceEEEeccccccCCh
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~ 273 (365)
...+|||||||+|.++..+++.+|..+++++|. +.++..++. ..++.++.+|+.+ +++ .||+|++..++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 347999999999999999999999999999999 777777665 3578999999987 433 4999999999998877
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEE
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 352 (365)
. .++|++++++|+| ||.+++.++...... ....... .......+.++|.+++.++ |+...+.
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFGPGTLH------ELRQSFG-----QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCCccCHH------HHHHHHH-----HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 6 6799999999999 899998765432211 0000110 0123455888999999988 8866554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=117.36 Aligned_cols=146 Identities=12% Similarity=0.138 Sum_probs=104.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAV 262 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i 262 (365)
..+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++ ...+.++.+|+.+ +++ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44555555 345689999999999999888764 579999999 889988875 3446788999877 554 49999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
+++.++|+.++. ..+|+++.++|+| ||.+++..+....-. .....+..........+..+.++|.+++.
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~------el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSLP------ELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCchH------HHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 999999877766 6899999999999 899988766432211 11111110000011234458899999999
Q ss_pred hcCCcc
Q 017835 343 EAGFSD 348 (365)
Q Consensus 343 ~aGf~~ 348 (365)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 888763
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.1e-13 Score=118.54 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHHhcccC--------------------------
Q 017835 199 EGLNTLVDVGGGTGT----LASAIAKKFP-----HIECTVFDQ-PHVVADLKSN-------------------------- 242 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 242 (365)
.+..+|+|+|||+|. ++..+++.++ +.+++++|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 445799999999996 4556666654 578999999 8999988751
Q ss_pred -------CCeEEEeCCCCCC-CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 243 -------GNLKYVGGNMFEA-IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 243 -------~~i~~~~~d~~~~-~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.+|+|..+|+.++ .+ .||+|+|.+++||++++...+++++++++|+| ||.|++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 3789999999984 32 59999999999999988888999999999999 89988854
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-13 Score=115.53 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=89.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCCC--CceEEEeccccccCCh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~~~~ 273 (365)
..+..+|||||||+|..+..|++..|+.+++++|+ +.+++.+++ ..++.+..+|+.++++ .||+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34667999999999999999999888999999999 889999986 4678889999888654 5999999999999988
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
++..++++++.++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 788899999999974 788888876544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=116.26 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=101.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~D~i~~~~vlh~ 270 (365)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++.+..+|+......||+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456899999999999999999874 56999999 888888774 24799999995434446999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh-h-hccCccccCHHHHHHHHHhcCCcc
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM-M-VLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
++++....+++++.+.+++ |.++..... .... ........... . ........+..+|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~~~---~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFAPY---TPLL---ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEECCc---cHHH---HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9998889999999987754 444433211 1000 00000000000 0 001123458899999999999999
Q ss_pred ceEEEcC
Q 017835 349 YKITDVL 355 (365)
Q Consensus 349 ~~~~~~~ 355 (365)
.++.+..
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9887764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-13 Score=129.27 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=110.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC---CCC--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE---AIP-- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~---~~~-- 257 (365)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. ..+++++.+|+.+ +++
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 44555555 4456799999999999999999874 48999999 888877653 4578999999964 344
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++..++||+++++..++|++++++|+| ||.+++.|.......... .. ......++..+|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHHH
Confidence 49999999999999998889999999999999 999999987654432210 00 012233578899
Q ss_pred HHHHHhcCCccce
Q 017835 338 AKLFFEAGFSDYK 350 (365)
Q Consensus 338 ~~ll~~aGf~~~~ 350 (365)
.+++.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 9999999998653
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-14 Score=110.31 Aligned_cols=87 Identities=28% Similarity=0.465 Sum_probs=59.0
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CC---CeEEEeCCCCCCCC--CceEEEeccccccCC
Q 017835 205 VDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NG---NLKYVGGNMFEAIP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 205 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---~i~~~~~d~~~~~~--~~D~i~~~~vlh~~~ 272 (365)
||||||+|.++..+++.+|..+++++|+ +.+++.+++ .. ++++...|..+..+ .||+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 888877765 12 34444555444333 699999999999995
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEE
Q 017835 273 DEECVKILKNCKKAIAINGKAGKV 296 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~l 296 (365)
+. ..+|+++++.|+| ||+|
T Consensus 81 ~~--~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 DI--EAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp -H--HHHHHHHTTT-TS---S-EE
T ss_pred hH--HHHHHHHHHHcCC---CCCC
Confidence 54 7999999999999 8875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=123.72 Aligned_cols=153 Identities=9% Similarity=0.076 Sum_probs=112.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCCCCCCceEEEe
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFEAIPPADAVLI 264 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~~~~~~D~i~~ 264 (365)
.+++.+. .+++.+|||||||+|.++..+++.+ +++++++|+ +.+++.+++ ...+++...|+.+....||+|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 3445555 6788999999999999999998876 679999999 888888775 23577888887653346999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhc
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEA 344 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 344 (365)
..+++|.++.....++++++++|+| ||++++.+...+...... ..+.+- ....++...+.+++.+.++ .
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~--yifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINK--YIFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCcee--eecCCCcCCCHHHHHHHHH-C
Confidence 9999999877778999999999999 999999876554322110 011111 1123456668888888766 5
Q ss_pred CCccceEEEcC
Q 017835 345 GFSDYKITDVL 355 (365)
Q Consensus 345 Gf~~~~~~~~~ 355 (365)
||.+..+...+
T Consensus 304 ~~~v~d~~~~~ 314 (383)
T PRK11705 304 LFVMEDWHNFG 314 (383)
T ss_pred CcEEEEEecCh
Confidence 88887776554
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=119.34 Aligned_cols=131 Identities=20% Similarity=0.164 Sum_probs=100.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEeccccccC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNW 271 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~ 271 (365)
+..+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++...|+.. +.+ .||+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 3469999999999999999886 579999999 788877653 2368888888876 344 59999999999999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
+++....+++++.++|+| ||.+++++....+....+ . .....++..|+.++++. |++++.
T Consensus 198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~-------p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------M-------PFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------C-------CCCcccCHHHHHHHhCC--CEEEEE
Confidence 988889999999999999 999888765543322110 0 00122478899998865 888776
Q ss_pred E
Q 017835 352 T 352 (365)
Q Consensus 352 ~ 352 (365)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-13 Score=102.98 Aligned_cols=88 Identities=24% Similarity=0.431 Sum_probs=74.2
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CC--CCceEEEec-ccccc
Q 017835 204 LVDVGGGTGTLASAIAKKF---PHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AI--PPADAVLIK-CVLHN 270 (365)
Q Consensus 204 iLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~--~~~D~i~~~-~vlh~ 270 (365)
|||+|||+|..+..+.+.+ |..+++++|+ +.+++.+++ ..++++++.|+.+ ++ ..||+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999999 889998875 3589999999988 43 369999995 55999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCc
Q 017835 271 WNDEECVKILKNCKKAIAINGKAG 294 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG 294 (365)
+++++..++|+++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 66
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=115.40 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=105.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc---c----CCCeEEEeCCCCC-C-CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK---S----NGNLKYVGGNMFE-A-IP 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~----~~~i~~~~~d~~~-~-~~ 257 (365)
..+..+++ .-.+++|||||||+|.++..++.+.+. .++|+|. +....+.. + ..++.+...-+.+ + ..
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 44555564 235689999999999999999999654 6999996 33222222 1 2334444333333 2 23
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++..||+|..++ ...|+++++.|+| ||.|++-..+.+.+.... +....++..+ . ...-..|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~rYa~m--~--nv~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDRYAKM--R--NVWFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCcccCC--C--ceEEeCCHHHH
Confidence 59999999999999998 7899999999999 888887777766554321 1111111111 1 11223489999
Q ss_pred HHHHHhcCCccceEEEc
Q 017835 338 AKLFFEAGFSDYKITDV 354 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~ 354 (365)
..|++.+||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999988766
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=115.34 Aligned_cols=137 Identities=17% Similarity=0.217 Sum_probs=99.2
Q ss_pred cCCCeEEEecCCccHHHHH--HHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCCCC---CCceEEEe
Q 017835 199 EGLNTLVDVGGGTGTLASA--IAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEAI---PPADAVLI 264 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~---~~~D~i~~ 264 (365)
.++++|+|||||.|.++.. ++..+|+.+++++|. +.+++.|++ .++++|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 4779999999998855333 334689999999999 888887775 368999999998732 36999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhc
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEA 344 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 344 (365)
. ++|+|+.++-.++|+++++.|+| ||.+++--. .. .. .++ ....+.++.+
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~~---~G-------~r-~~L---------Yp~v~~~~~~------ 251 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRSA---HG-------AR-AFL---------YPVVDPCDLR------ 251 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEecc---cc-------hH-hhc---------CCCCChhhCC------
Confidence 9 99999766668999999999999 787777431 11 00 111 1222334332
Q ss_pred CCccceEEEc-CC-ceeEEEEeC
Q 017835 345 GFSDYKITDV-LG-VRSLIEVYP 365 (365)
Q Consensus 345 Gf~~~~~~~~-~~-~~~vi~~~~ 365 (365)
||++..+.+- +. ..++|.+++
T Consensus 252 gf~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 252 GFEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred CeEEEEEECCCCCceeeEEEEEe
Confidence 9998766555 33 388888875
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-12 Score=106.97 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=104.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCC-CCceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAI-PPADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~-~~~D~i~~~~vlh~~ 271 (365)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ .-+++++.+|+.+.. +.||+|+++..+|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 4457899999999999999999876 8999999 888887764 236788999987743 369999999888766
Q ss_pred Chh-------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcccc
Q 017835 272 NDE-------------------ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEER 332 (365)
Q Consensus 272 ~~~-------------------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 332 (365)
++. ...++|+++.++|+| ||+++++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~---------------------------- 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN---------------------------- 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence 542 135789999999999 999998764221
Q ss_pred CHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 333 NEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
...++.+++++.||....+..-.-+.-.+.++
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 24677888999999988888777666655555
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-12 Score=108.25 Aligned_cols=121 Identities=23% Similarity=0.386 Sum_probs=94.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh 269 (365)
..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 56778999999999999999999999999999999 888887764 3578999998865544 599999976654
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
+ ...+++++.+.|+| ||++++..... -+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 24678999999999 89887743211 034667788999999876
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
++...
T Consensus 153 ~~~~~ 157 (187)
T PRK08287 153 DCVQL 157 (187)
T ss_pred eEEEE
Confidence 65433
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-12 Score=109.47 Aligned_cols=138 Identities=12% Similarity=0.158 Sum_probs=96.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhc----ccCCCeEEEeCCCCCC-----CC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADL----KSNGNLKYVGGNMFEA-----IP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~i~~~~~d~~~~-----~~-~~D~i~~~~ 266 (365)
.+++.+|||+|||+|.++..+++..+..+++++|. +.+++.+ +...++.++.+|...+ ++ .+|+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 67889999999999999999999887668999999 7666643 3346799999998753 12 4898874
Q ss_pred ccccCChh-HHHHHHHHHHHhcccCCCCcEEEEE-eeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhc
Q 017835 267 VLHNWNDE-ECVKILKNCKKAIAINGKAGKVIII-DIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEA 344 (365)
Q Consensus 267 vlh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 344 (365)
+.+++ ....+|++++++||| ||+++|. ... +.+... ...+..++..++++++
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~-~~d~~~-------------------~~~~~~~~~~~~l~~a 201 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKAR-SIDVTK-------------------DPKEIFKEEIRKLEEG 201 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecc-cccCcC-------------------CHHHHHHHHHHHHHHc
Confidence 34433 234568999999999 9999994 321 100000 0001123445899999
Q ss_pred CCccceEEEcCCc---eeEEEE
Q 017835 345 GFSDYKITDVLGV---RSLIEV 363 (365)
Q Consensus 345 Gf~~~~~~~~~~~---~~vi~~ 363 (365)
||++++....... +..+.+
T Consensus 202 GF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 202 GFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred CCeEEEEEcCCCCcCCeEEEEE
Confidence 9999999887433 444443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=107.56 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=100.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCC-C---
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFE-A--- 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~--- 255 (365)
.++.+|||+|||.|..+..|+++ +.+|+++|+ +..++.+.. ..+|++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999987 789999999 777776421 3478999999998 3
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHH
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEK 335 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~ 335 (365)
.+.||.|+-..++||++.+.....++.+.++|+| ||+++++....+...... .....+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~g-----------------pp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAG-----------------PPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCC-----------------cCCCCCHH
Confidence 2359999999999999999989999999999999 898887766553221100 00124888
Q ss_pred HHHHHHHhcCCccceEEE
Q 017835 336 EWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~ 353 (365)
|+.++|.. +|.+..+..
T Consensus 171 eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 171 EVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHhcC-CceEEEEee
Confidence 99988864 455554433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=116.92 Aligned_cols=144 Identities=16% Similarity=0.097 Sum_probs=96.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----C-------CCeEEEeCCCCCCCCCceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----N-------GNLKYVGGNMFEAIPPADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-------~~i~~~~~d~~~~~~~~D~i~~~~v 267 (365)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .++++...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 679999999 888887764 1 3578888887543346999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc---CccccCHHHHHHHHHhc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV---KGEERNEKEWAKLFFEA 344 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~t~~e~~~ll~~a 344 (365)
+||++++....+++.+.+. .+ |+++|.. .+.... +......... ..... ..-..+.+++.++|+++
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~~----g~liIs~--~p~~~~---~~~l~~~g~~-~~g~~~~~r~y~~s~eel~~lL~~A 290 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-AE----KRLIISF--APKTLY---YDILKRIGEL-FPGPSKATRAYLHAEADVERALKKA 290 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-cC----CEEEEEe--CCcchH---HHHHHHHHhh-cCCCCcCceeeeCCHHHHHHHHHHC
Confidence 9999988777888888754 44 4555432 111100 0000000000 00000 01123799999999999
Q ss_pred CCccceEEEcCC
Q 017835 345 GFSDYKITDVLG 356 (365)
Q Consensus 345 Gf~~~~~~~~~~ 356 (365)
||++........
T Consensus 291 Gf~v~~~~~~~~ 302 (315)
T PLN02585 291 GWKVARREMTAT 302 (315)
T ss_pred CCEEEEEEEeec
Confidence 999876655543
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-12 Score=105.94 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=89.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C-CCCceEEEeccccccC
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A-IPPADAVLIKCVLHNW 271 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~~~~D~i~~~~vlh~~ 271 (365)
+.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ + ...||+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 68999999999999999998899999999999 777766553 3579999999977 2 23699998866 4432
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh---cCCcc
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE---AGFSD 348 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~---aGf~~ 348 (365)
..+++.+++.|+| ||++++... .. ...++..+.+. .||+.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~~------~~-----------------------~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYKG------KK-----------------------YLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEcC------CC-----------------------cHHHHHHHHHhhhhcCceE
Confidence 4568888999999 899887531 00 23344444444 79999
Q ss_pred ceEEEcCCc
Q 017835 349 YKITDVLGV 357 (365)
Q Consensus 349 ~~~~~~~~~ 357 (365)
+++.+..++
T Consensus 165 ~~~~~~~~~ 173 (181)
T TIGR00138 165 LEVPPLTGP 173 (181)
T ss_pred eeccccCCC
Confidence 999888665
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=114.17 Aligned_cols=97 Identities=13% Similarity=0.258 Sum_probs=78.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC--CC-Cc-----eE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA--IP-PA-----DA 261 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~--~~-~~-----D~ 261 (365)
.++.+|||+|||+|..+..|++..+ ..+++++|+ +.+++.+.+ ..+|.++++|+.+. .+ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3557999999999999999999987 689999999 888877754 13466789999873 32 23 34
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+++...+++++++++..+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 5556889999999999999999999999 888876
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=104.60 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=83.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D 260 (365)
.+.+.++ .-+..++||+|||.|..+..|+++ +..|+++|. +..++.+.+ .-.|+....|+.+ .++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3555555 445689999999999999999998 789999999 666766553 3458889999987 454 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+|++..|+++++.+...++++++.+.++| ||.+++.....
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~ 136 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFME 136 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB-
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecc
Confidence 99999999999999999999999999999 88877766543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=113.31 Aligned_cols=108 Identities=19% Similarity=0.345 Sum_probs=87.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCCCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFEAIP 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~~~ 257 (365)
..+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.+++ ..+++++..|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34566666 33346999999999999999999999999999999 777877764 1378999999987543
Q ss_pred --CceEEEecccccc---CChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 258 --PADAVLIKCVLHN---WNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 258 --~~D~i~~~~vlh~---~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.||+|+++-.+|. +++..+.++|+++++.|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 5999999766553 4566678999999999999 99999874
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-12 Score=106.57 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=99.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCC-eEEEeCCCCC--CCC-CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGN-LKYVGGNMFE--AIP-PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-i~~~~~d~~~--~~~-~~D~i~~~~vl 268 (365)
....+.||.|+|.|..+..++-.. --++..+|. +..++.|++ ..+ .++.+..+.+ |.+ .||+||+.+++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998876543 236778887 888888874 234 3455555554 433 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
-|++|++.+++|++++++|+| +|.|+|=|.+...... .+|- ..+.-.|+.+.|+++|++||+++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~----~DsSvTRs~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDE----EDSSVTRSDEHFRELFKQAGLRL 196 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEET----TTTEEEEEHHHHHHHHHHCT-EE
T ss_pred ccCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCC----ccCeeecCHHHHHHHHHHcCCEE
Confidence 999999999999999999999 8888888887765421 1111 12345689999999999999999
Q ss_pred ceEEEcCCc
Q 017835 349 YKITDVLGV 357 (365)
Q Consensus 349 ~~~~~~~~~ 357 (365)
++.....++
T Consensus 197 v~~~~Q~~f 205 (218)
T PF05891_consen 197 VKEEKQKGF 205 (218)
T ss_dssp EEEEE-TT-
T ss_pred EEeccccCC
Confidence 988777553
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=106.52 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=95.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCC--CceEEEeccccccCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh~~~ 272 (365)
++..+|||||||+|.++..+++. ...+++++|+ +.+++.++. .+++++.+|+.+ +++ .||+|++.+++||++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 45679999999999999888765 3568899999 788887763 568888888865 233 499999999999998
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch-----hhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 273 DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT-----ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
++ .++|+++.+.+++ +.+.+ +..........+. .....+........+.+..+.+++.++++++||+
T Consensus 90 d~--~~~l~e~~r~~~~----~ii~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~ 161 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH----AIVSF--PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLR 161 (194)
T ss_pred CH--HHHHHHHHHhCCe----EEEEc--CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCE
Confidence 76 6788888777654 32221 1100000000000 0000000000000123456999999999999999
Q ss_pred cceEEEcC
Q 017835 348 DYKITDVL 355 (365)
Q Consensus 348 ~~~~~~~~ 355 (365)
+++....+
T Consensus 162 v~~~~~~~ 169 (194)
T TIGR02081 162 ILDRAAFD 169 (194)
T ss_pred EEEEEEec
Confidence 98877664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-11 Score=101.78 Aligned_cols=118 Identities=22% Similarity=0.279 Sum_probs=91.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh 269 (365)
+++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3478999999999999999999999999999999 888887764 3459999999877 323 5999998752
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
. ....+++++++.|+| ||++++++... ...++.++.+..|+++.
T Consensus 122 --~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred --c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence 2 236789999999999 99999875311 23345666677799877
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
+++..
T Consensus 166 ~~~~~ 170 (187)
T PRK00107 166 EVIEL 170 (187)
T ss_pred eeEEE
Confidence 77655
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=104.03 Aligned_cols=132 Identities=12% Similarity=0.107 Sum_probs=100.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCCC----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFEA---- 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~~---- 255 (365)
.+..+|||+|||.|..+..|+++ +.+|+++|+ +..++.+.. ..+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 789999999 777776421 35789999999983
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHH
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEK 335 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~ 335 (365)
.+.||+|+-..++|+++.+...+.++.+.++|+| ||+++++....+...... .....+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~g-----------------Pp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAG-----------------PPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCC-----------------CCCCCCHH
Confidence 2358999999999999999999999999999999 887666555443221110 00124889
Q ss_pred HHHHHHHhcCCccceEEE
Q 017835 336 EWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~ 353 (365)
|+.+++.. +|.+..+..
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99998864 266555544
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=108.14 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=100.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-C--C-CCceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-A--I-PPADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~-~~~D~i~~~~v 267 (365)
..+..+|||||||+|.++..+++. +.+++++|. +.++..+++ ..++++...|+.+ + . ..||+|++.++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 346789999999999999988875 568999998 777776653 3357777777765 2 2 25999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh-ccCccccCHHHHHHHHHhcCC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV-LVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~t~~e~~~ll~~aGf 346 (365)
+++.++. ..+|+++.+.|+| ||.+++..+........................ ....+..+.++|.++++++||
T Consensus 124 l~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 124 LEHVPDP--ASFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 9998876 5789999999999 899887654211100000000000000000000 011234588999999999999
Q ss_pred ccceEEE
Q 017835 347 SDYKITD 353 (365)
Q Consensus 347 ~~~~~~~ 353 (365)
+++....
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9887754
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-12 Score=103.84 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=93.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
-....+++|+|||.|.++..|+.++ -+++++|. +..++.+++ .++|+++..|+-+..| .||+|+++.++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4566899999999999999999986 37899999 888998875 5799999999988555 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 271 WND-EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 271 ~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
+++ ++...+++++.++|+| ||.|++..+.- . ....+ |.....+.+.++|.+. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~rd-~---------~c~~w---------gh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHARD-A---------NCRRW---------GHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-H-H---------HHHHT---------T-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEecC-C---------ccccc---------CcccchHHHHHHHHHH-hhhe
Confidence 986 6778899999999999 89888866521 1 00111 3333567778888876 4444
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
+....
T Consensus 176 ~~~~~ 180 (201)
T PF05401_consen 176 ERVEC 180 (201)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 44333
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-11 Score=100.36 Aligned_cols=99 Identities=22% Similarity=0.400 Sum_probs=80.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vlh 269 (365)
....+|||+|||+|..+..+++.+|..+++++|. +.+++.+++ .+.++++..|.+++.+ .||+|++.--+|
T Consensus 30 ~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 30 HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 3678999999999999999999999999999999 888887764 2339999999999665 599999988776
Q ss_pred cCCh---hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 270 NWND---EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 270 ~~~~---~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.-.+ .-..++++.+.+.|+| ||.++++-
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 5443 3468899999999999 89997644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=105.60 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=100.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CC-CeEEEeCCCCC-C--C-CCceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NG-NLKYVGGNMFE-A--I-PPADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~i~~~~~d~~~-~--~-~~~D~i~~~~vl 268 (365)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. ++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888764 46999999 777776654 12 58888888765 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhh--hh--hhhc---cCccccCHHHHHHHH
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMD--ML--MMVL---VKGEERNEKEWAKLF 341 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d--~~--~~~~---~~~~~~t~~e~~~ll 341 (365)
|+..+. ..+|++++++|+| ||.+++......... ....... .. .... ...+..+..+|.+++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~---gG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 191 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP---GGILFFSTINRTPKS------YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL 191 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC---CcEEEEEecCCCchH------HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence 999877 5789999999999 899888764321100 0000000 00 0000 112344889999999
Q ss_pred HhcCCccceEEEc
Q 017835 342 FEAGFSDYKITDV 354 (365)
Q Consensus 342 ~~aGf~~~~~~~~ 354 (365)
+++||+++++...
T Consensus 192 ~~~G~~i~~~~~~ 204 (224)
T TIGR01983 192 ESAGLRVKDVKGL 204 (224)
T ss_pred HHcCCeeeeeeeE
Confidence 9999999887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=103.90 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=107.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC-----CC--CceEEEecc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPH--IECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA-----IP--PADAVLIKC 266 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~-----~~--~~D~i~~~~ 266 (365)
.+||+||||.|....-+++..|+ +++...|. |..++..++ ..++.....|+..+ .+ ..|++++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999888 89999998 888888775 45666666677663 11 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcc---ccCHHHHHHHHHh
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGE---ERNEKEWAKLFFE 343 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~t~~e~~~ll~~ 343 (365)
+|.-++++.-...+++++++||| ||.|++-|....+-.... +. ....++.+......|. ..+.+++++++.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 99999999889999999999999 999999887654422110 10 0112222222222332 2399999999999
Q ss_pred cCCccceE
Q 017835 344 AGFSDYKI 351 (365)
Q Consensus 344 aGf~~~~~ 351 (365)
+||..++.
T Consensus 228 agf~~~~~ 235 (264)
T KOG2361|consen 228 AGFEEVQL 235 (264)
T ss_pred cccchhcc
Confidence 99986543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.6e-11 Score=93.53 Aligned_cols=100 Identities=20% Similarity=0.326 Sum_probs=78.7
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--C-C-CC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--A-I-PP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~-~~ 258 (365)
++..+. ..+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|... + . +.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 334444 45567999999999999999999999999999999 777877653 3578999888764 1 2 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
||+|++....+ ...++++++++.|+| ||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 99999976543 335889999999999 8887763
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=108.73 Aligned_cols=107 Identities=18% Similarity=0.305 Sum_probs=85.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC-CceEE
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP-PADAV 262 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-~~D~i 262 (365)
++..++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ .-..+++..|..+..+ .||+|
T Consensus 188 Ll~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 188 LLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 444454 23346899999999999999999999999999999 788887764 2245677888877544 59999
Q ss_pred EeccccccC---ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 263 LIKCVLHNW---NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 263 ~~~~vlh~~---~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+++..+|+. ......++++++.+.|+| ||.++|+-.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 999888863 334568999999999999 999988654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-10 Score=102.88 Aligned_cols=123 Identities=23% Similarity=0.341 Sum_probs=94.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEeccccc-
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVLH- 269 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vlh- 269 (365)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. ..+++++.+|+.++.+ .||+|++.-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456999999999999999999999999999999 888887764 3479999999988654 599999853322
Q ss_pred -----cCChhH------------------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc
Q 017835 270 -----NWNDEE------------------CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL 326 (365)
Q Consensus 270 -----~~~~~~------------------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 326 (365)
.+.... ...+++++.+.|+| ||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC-------------------------
Confidence 222111 23788999999999 888776210
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
....+++.++|+++||+.++++..
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 013467889999999998877665
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=96.79 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=98.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCC--CceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh~~ 271 (365)
.+++.+|||+|||.|.++..|.+. .++++.|+|+ +..+..+. ...+.++++|+.+ .+| +||.|+++.+|.+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 467899999999999999888886 5899999998 55555544 5778899999988 355 49999999999998
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh--------------hhhccCccccCHHHH
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML--------------MMVLVKGEERNEKEW 337 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--------------~~~~~~~~~~t~~e~ 337 (365)
..+ .++|+++.|+-+ +.+|.=+ +-+.. ...+.+. ..-..|-+..|..++
T Consensus 89 ~~P--~~vL~EmlRVgr------~~IVsFP---NFg~W------~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 89 RRP--DEVLEEMLRVGR------RAIVSFP---NFGHW------RNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred hHH--HHHHHHHHHhcC------eEEEEec---ChHHH------HHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 887 678888877633 3333211 11100 0000000 000123344599999
Q ss_pred HHHHHhcCCccceEEEcCC
Q 017835 338 AKLFFEAGFSDYKITDVLG 356 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~~~ 356 (365)
.++.++.|+++.+...+.+
T Consensus 152 e~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 152 EDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHHHCCCEEEEEEEEcC
Confidence 9999999999998887754
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-10 Score=99.70 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=91.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HHHhcccCCCeEEEeCCCCCC------CCCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PH----VVADLKSNGNLKYVGGNMFEA------IPPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~~~------~~~~D~i~~~ 265 (365)
+++..+|||+|||+|.++..+++.. +.-+++++|. +. +++.++...+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 6788999999999999999999986 4558999998 44 455555457899999998764 2358999886
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.. .++ +...++.++++.||| ||.++|...........+ ...+=.+|. ++|+++|
T Consensus 210 va---~pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~------------------pe~~f~~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA---QPD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAK------------------PEVVFASEV-QKLKKEG 263 (293)
T ss_pred CC---Ccc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCC------------------HHHHHHHHH-HHHHHcC
Confidence 63 133 335566789999999 899998321111111000 001111445 7889999
Q ss_pred CccceEEEcC
Q 017835 346 FSDYKITDVL 355 (365)
Q Consensus 346 f~~~~~~~~~ 355 (365)
|++++...+.
T Consensus 264 F~~~e~v~L~ 273 (293)
T PTZ00146 264 LKPKEQLTLE 273 (293)
T ss_pred CceEEEEecC
Confidence 9999988885
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-10 Score=99.71 Aligned_cols=124 Identities=22% Similarity=0.259 Sum_probs=91.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---C----CCeEEEeCCCCCCCCCceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---N----GNLKYVGGNMFEAIPPADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~----~~i~~~~~d~~~~~~~~D~i~~~~vlh~ 270 (365)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ . .++.+..+|. .||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 5678999999999999988776543 36999999 888887765 1 2333333321 69999875432
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+....+++++.+.|+| ||++++..... ...+++.+.+++.||++++
T Consensus 190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ---NPLLELAPDLARLLKP---GGRLILSGILE----------------------------EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHHHHHHHHhcCC---CcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEEE
Confidence 2346789999999999 89988864321 0356778899999999999
Q ss_pred EEEcCCceeEEEEe
Q 017835 351 ITDVLGVRSLIEVY 364 (365)
Q Consensus 351 ~~~~~~~~~vi~~~ 364 (365)
+....++.+++--+
T Consensus 236 ~~~~~~W~~~~~~~ 249 (250)
T PRK00517 236 VLERGEWVALVGKK 249 (250)
T ss_pred EEEeCCEEEEEEEe
Confidence 98888887776544
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-10 Score=100.60 Aligned_cols=135 Identities=21% Similarity=0.361 Sum_probs=98.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vl 268 (365)
..+..+|||+|||+|..+..++..+|..+++++|. +.+++.+++ ..++.++.+|++++.+ .||+|++.-..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 35667999999999999999999999999999999 777777764 3589999999988654 59999985222
Q ss_pred c------cCCh------------------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh
Q 017835 269 H------NWND------------------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM 324 (365)
Q Consensus 269 h------~~~~------------------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 324 (365)
. ...+ +....+++++.+.|+| ||.+++ +. +.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g~---------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----GY---------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----Cc----------------
Confidence 1 1111 1235788899999999 888776 22 00
Q ss_pred hccCccccCHHHHHHHHHhcCCccceEEE-cCCceeEEEEe
Q 017835 325 VLVKGEERNEKEWAKLFFEAGFSDYKITD-VLGVRSLIEVY 364 (365)
Q Consensus 325 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~ 364 (365)
...+++.+++++.||+.++++. ..+...++.++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0235688899999998766643 34555555554
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=100.91 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=77.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCC-CC-C--CC--CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNM-FE-A--IP--PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~-~~-~--~~--~~D~i~~~~ 266 (365)
+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 578999999999999999999999999999999 888887764 36799999998 33 2 43 499999865
Q ss_pred ccccCC------hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWN------DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
...... ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 432111 11136789999999999 89998864
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-09 Score=91.61 Aligned_cols=134 Identities=18% Similarity=0.267 Sum_probs=96.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCC-eEEEeCCCCCCCC--CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGN-LKYVGGNMFEAIP--PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~-i~~~~~d~~~~~~--~~D~i~~~~v 267 (365)
.++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++ .++ +.++.+|+.++++ .||+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 56679999999999999999988 689999999 788877753 122 8899999988654 4999998655
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccC
Q 017835 268 LHNWN-------------------DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK 328 (365)
Q Consensus 268 lh~~~-------------------~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 328 (365)
++... ......+++++.++|+| ||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence 43211 12245689999999999 88887754210
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEcCCc---eeEEEEeC
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDVLGV---RSLIEVYP 365 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~---~~vi~~~~ 365 (365)
...+++.++++++||++..+...... ..+++.+|
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 13456788999999998776554322 44555543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=95.27 Aligned_cols=101 Identities=8% Similarity=0.047 Sum_probs=86.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCC-CC--
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFE-AI-- 256 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~-- 256 (365)
.++.+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..+|++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999998 778999999 777776421 4589999999998 32
Q ss_pred ---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 257 ---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 257 ---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
..||+|+-..++++++++...+..+.+.++|+| ||+++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence 259999999999999999999999999999999 999998876543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=95.88 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=87.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~ 259 (365)
+.+++.++ .....+|||+|||.|.+++.+++.+|+.+++.+|. ...++.+++ .++..+...|..++.. .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 55677787 55555999999999999999999999999999999 666777664 2333567778888765 59
Q ss_pred eEEEeccccccC---ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 260 DAVLIKCVLHNW---NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 260 D~i~~~~vlh~~---~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|.|+++--+|.= .+.-+.++++...+.|++ ||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 999999988842 234456999999999999 999998765
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=97.31 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=76.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--- 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--- 257 (365)
+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|. +.+++.+++ ..+++++.+|+.+..+
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344444 56778999999999999999988764 568999999 888877764 2468999999987432
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.||+|++..++++++ +++.+.|+| ||+|++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 599999998887655 357788999 8998774
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-10 Score=93.91 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=88.4
Q ss_pred EEeec-hHHHHhccc---------CCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCc
Q 017835 228 TVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAG 294 (365)
Q Consensus 228 ~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG 294 (365)
+++|. +.|++.|++ ..+++++.+|+.+ +++ .||+|++..++|++++. .+.|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 47888 889988753 2369999999987 655 49999999999999876 7899999999999 99
Q ss_pred EEEEEeeecCCCccCccchhhhhhhhhhhhh---c-cC-----------ccccCHHHHHHHHHhcCCccceEEEcCCc-e
Q 017835 295 KVIIIDIKMESEKADYKTTETQLFMDMLMMV---L-VK-----------GEERNEKEWAKLFFEAGFSDYKITDVLGV-R 358 (365)
Q Consensus 295 ~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---~-~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~ 358 (365)
++++.|...++...... ....+....... . .. ....+.+++.++|+++||+.++....... .
T Consensus 76 ~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 76 RVSILDFNKSNQSVTTF--MQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEEEEECCCCChHHHHH--HHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 99999987654321100 000000000000 0 00 12348899999999999999988777543 4
Q ss_pred eEE
Q 017835 359 SLI 361 (365)
Q Consensus 359 ~vi 361 (365)
.+.
T Consensus 154 ~~~ 156 (160)
T PLN02232 154 GNL 156 (160)
T ss_pred Hee
Confidence 443
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.9e-10 Score=95.64 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=100.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCC-CCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFE-AIP 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~~ 257 (365)
..+..+||..|||.|.-+..|+++ +.+++|+|+ +..++.+.+ ..+|++.++|+++ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 466789999999999999999998 689999999 777777621 4578999999999 222
Q ss_pred ---CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCcc-CccchhhhhhhhhhhhhccCccccC
Q 017835 258 ---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA-DYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 258 ---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
.||+|+=...|+-++++...+..+.+.++|+| ||+++++....+.... .+|+ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 59999999999999999999999999999999 8996665554433221 1111 127
Q ss_pred HHHHHHHHHhcCCccceEEE
Q 017835 334 EKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~ 353 (365)
.+|+.++|. .+|++.....
T Consensus 172 ~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEec
Confidence 889999988 7888776654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=94.48 Aligned_cols=125 Identities=11% Similarity=0.183 Sum_probs=97.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---CC--CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---IP--PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~~--~~D~i~~ 264 (365)
.....+|||+|||+|..+..++++++.++++++|+ +.+.+.|++ .+||++++.|+.+- .+ .||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34489999999999999999999999999999999 888888775 68999999999882 22 4999999
Q ss_pred ccccccCCh----------------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccC
Q 017835 265 KCVLHNWND----------------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK 328 (365)
Q Consensus 265 ~~vlh~~~~----------------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 328 (365)
+--.+.-.. -....+++.+++.||| ||++.++-.. +
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~--e----------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP--E----------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH--H-----------------------
Confidence 754432221 1246788999999999 8999886531 0
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEc
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
...||.+++.+.+|...++..+
T Consensus 174 ----rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 ----RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred ----HHHHHHHHHHhcCCCceEEEEe
Confidence 3457788888888887766555
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=97.49 Aligned_cols=97 Identities=22% Similarity=0.399 Sum_probs=75.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEeccc-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKCV- 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~v- 267 (365)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|++.--
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 3457999999999999999999999999999999 888888774 3579999999987654 4999998511
Q ss_pred ------------cccCCh----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 268 ------------LHNWND----------EECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 268 ------------lh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+++.+. +....+++++.+.|+| ||++++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 111111 1236789999999999 787664
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-09 Score=98.70 Aligned_cols=134 Identities=16% Similarity=0.250 Sum_probs=95.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC-CC---CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA-IP---PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~-~~---~~D~i~~~~vl 268 (365)
.+..+|||+|||+|.++..++..+|+.+++++|. +.+++.+++ ..+++++.+|++++ .+ .||+|+++-.-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3456999999999999999999999999999999 888888875 34799999999763 22 49999995421
Q ss_pred ccCC---------------------h--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 269 HNWN---------------------D--EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 269 h~~~---------------------~--~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
..-. + +...++++.+.+.|+| ||.++ +|.-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG~~--------------------- 384 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHGFD--------------------- 384 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEECcc---------------------
Confidence 1000 0 1124677777889998 77755 443110
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEEe
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEVY 364 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 364 (365)
..+++.+++++.||+.+++..- .+...++.++
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 2456788889999987776554 4555555443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-10 Score=95.85 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=76.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C---CC--CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A---IP--PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~---~~--~~D~i~~~~ 266 (365)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+ + .+ .+|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999999999999999999 878877653 3589999999975 1 33 488888765
Q ss_pred ccccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWNDEE-------CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..+ |+... ...++++++++|+| ||.|++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 432 32211 14689999999999 89988765
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=95.32 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=91.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCC-C-CceEEEeccccccCChhH
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAI-P-PADAVLIKCVLHNWNDEE 275 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~-~-~~D~i~~~~vlh~~~~~~ 275 (365)
...+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++ ..+++++.+|+.+.. . .||+|++.-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 356999999999999999988887789999999 888888876 468999999998833 2 599999988887764432
Q ss_pred H------------------HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 276 C------------------VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 276 ~------------------~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
. .+.++.....|+| +|.+++. ++.. + ++ ....+.+++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~---yss~---~-------~y---------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA---YSGR---P-------YY---------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE---Eecc---c-------cc---------cccCCHHHH
Confidence 1 3456666778888 6766555 1110 0 11 112378899
Q ss_pred HHHHHhcCCc
Q 017835 338 AKLFFEAGFS 347 (365)
Q Consensus 338 ~~ll~~aGf~ 347 (365)
+++++++||.
T Consensus 199 ~~~l~~~g~~ 208 (279)
T PHA03411 199 LKWSKQTGLV 208 (279)
T ss_pred HHHHHhcCcE
Confidence 9999999985
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-09 Score=95.79 Aligned_cols=96 Identities=22% Similarity=0.382 Sum_probs=75.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEec------
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIK------ 265 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~------ 265 (365)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 888887774 2469999999998665 59999985
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 -------CVLHNWND----------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 -------~vlh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+++|-|. .....+++++.+.|+| ||.++ +|.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~-~e~ 244 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLV-CEI 244 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEE-EEE
Confidence 23332221 1356789999999999 77654 443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=94.77 Aligned_cols=100 Identities=14% Similarity=0.216 Sum_probs=77.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI--- 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--- 256 (365)
..+++.++ ..++.+|||||||+|..+..+++.. ++.+++++|. +.+++.+++ ..+++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 33455555 6788999999999999999888875 4579999999 888887764 357999999988732
Q ss_pred CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 257 PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 257 ~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..||+|++....++++ +.+.+.|+| ||++++..
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~~ 176 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIPV 176 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEEE
Confidence 2599999987765443 356678999 99988853
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4e-09 Score=91.02 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=76.0
Q ss_pred hhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CC-CC
Q 017835 192 HKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AI-PP 258 (365)
Q Consensus 192 ~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~-~~ 258 (365)
..+. ..++.+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .++++++.+|+.+ .. +.
T Consensus 34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3444 6778899999999999999998764 6679999999 888887653 3678999999876 22 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
||.|++... ......+++.+.+.|+| ||++++
T Consensus 112 ~D~V~~~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 112 FDRIFIGGG-----SEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCEEEECCC-----cccHHHHHHHHHHHcCC---CcEEEE
Confidence 999998532 22346789999999999 888875
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.6e-10 Score=99.74 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=73.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC---CeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH---IECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~ 270 (365)
....+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..++++..+|..+ |++ .||+|++...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 34578999999999999999988764 37899999 888888875 5778999999887 655 4999987543
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+ ..+++++++|+| ||+++++.+
T Consensus 161 -~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 -P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred -C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236789999999 999998764
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-09 Score=96.60 Aligned_cols=94 Identities=20% Similarity=0.375 Sum_probs=75.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEeccc----
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKCV---- 267 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~v---- 267 (365)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|++.--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888888774 3579999999987554 5999998511
Q ss_pred ---------cccCCh----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 268 ---------LHNWND----------EECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 268 ---------lh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+++.+. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 122121 2236889999999999 787765
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=91.91 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=78.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCCC---------CC--
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA---------IP-- 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~-- 257 (365)
+.+.+. .++++.+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ .+
T Consensus 42 ~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 42 IQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 344443 24677899999999999999999986 45799999995532 235699999999883 22
Q ss_pred CceEEEeccccccCChhH---------HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEE---------CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~---------~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+|+|++..+.+....+. ...+|+++.++|+| ||.+++..+
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~ 166 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF 166 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence 499999977665443221 24689999999999 899988654
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=93.46 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=76.5
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---P 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~ 257 (365)
.+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|. +.+++.+++ ..+++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444455 67789999999999999999998864 567999998 888887764 357999999998732 2
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.||+|++.....+. .+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 59999988765443 3457788999 8998874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=87.79 Aligned_cols=100 Identities=23% Similarity=0.310 Sum_probs=82.2
Q ss_pred HhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---CCCce
Q 017835 191 IHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---IPPAD 260 (365)
Q Consensus 191 ~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~~~~D 260 (365)
+.++. ..++.+++|||||+|..+..++..+|..+++.+|. ++.++..++ .++++++.+|.-+. .+.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 34444 68889999999999999999999999999999998 766666553 78999999998773 34699
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.|++...- ....+|+.+...|+| ||+|++.-.
T Consensus 105 aiFIGGg~------~i~~ile~~~~~l~~---ggrlV~nai 136 (187)
T COG2242 105 AIFIGGGG------NIEEILEAAWERLKP---GGRLVANAI 136 (187)
T ss_pred EEEECCCC------CHHHHHHHHHHHcCc---CCeEEEEee
Confidence 99997752 346789999999999 888887543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=88.84 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=95.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC--C-CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI--P-PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~--~-~~D~i~~~~v 267 (365)
+...+|||+|||.|.++..|++..=.-..+++|. +..++.|+. ++.|+|++.|+.+|. + .||+|+-..+
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 3444999999999999999999843335789998 777766653 455999999999952 3 4999987766
Q ss_pred cccCC------hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 268 LHNWN------DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 268 lh~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
+.-++ .......+..+.+.|+| ||+++|.... .|.+|+.+.+
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f 193 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEF 193 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHH
Confidence 54332 22235678888899999 8888885431 2789999999
Q ss_pred HhcCCccceEEEcCC
Q 017835 342 FEAGFSDYKITDVLG 356 (365)
Q Consensus 342 ~~aGf~~~~~~~~~~ 356 (365)
+.-||......+.|.
T Consensus 194 ~~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 194 ENFNFEYLSTVPTPT 208 (227)
T ss_pred hcCCeEEEEeeccce
Confidence 999999888888763
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-09 Score=98.69 Aligned_cols=106 Identities=12% Similarity=0.198 Sum_probs=80.8
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CCC--
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AIP-- 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~~-- 257 (365)
+++.+. ......+||||||+|.++..++..+|+..++|+|+ +.++..+.+ ..++.++.+|+.. .++
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 34567999999999999999999999999999999 777776653 4689999999854 344
Q ss_pred CceEEEeccccccCChhH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEE-----CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~-----~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+|.|+++... .|+... ...+|+.++++|+| ||.+.+...
T Consensus 192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 49999875432 243221 15789999999999 899888653
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-09 Score=90.24 Aligned_cols=101 Identities=23% Similarity=0.349 Sum_probs=77.7
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CC-CC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AI-PP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~-~~ 258 (365)
++..+. ..++.+|||+|||+|.++..+++..|+.+++++|. +.+++.+++ ..+++++.+|+.+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344444 56778999999999999999998888899999999 888887764 3579999998865 22 24
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+|.+++.. . .....+++++.+.|+| ||++++...
T Consensus 110 ~d~v~~~~-----~-~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG-----G-RPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCEEEEEC-----C-cCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 67665421 1 2346889999999999 899888764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=99.73 Aligned_cols=132 Identities=19% Similarity=0.358 Sum_probs=95.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEecc--c
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKC--V 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~--v 267 (365)
+..+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++- +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 888888774 3579999999987554 599999842 1
Q ss_pred ------------cccCCh----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 268 ------------LHNWND----------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 268 ------------lh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
+.+.+. +....+++++.+.|+| ||.+++ |.-.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~---------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF---------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC----------------------
Confidence 111110 1234678888999999 887765 4211
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEE
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEV 363 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~ 363 (365)
...+++.+++.+.||..+++..- .+...++.+
T Consensus 272 ------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 ------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 02456788888899987776554 454444443
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=96.15 Aligned_cols=97 Identities=19% Similarity=0.344 Sum_probs=77.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CCC-CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AIP-PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~~-~~D~i~~~~ 266 (365)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567999999999999999999999999999999 999988874 3689999999865 233 599998753
Q ss_pred ccc--cCChh-HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 267 VLH--NWNDE-ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 267 vlh--~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+ ..+.. ...++++++++.|+| ||++++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 22 12211 126899999999999 8888874
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.9e-09 Score=93.74 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=84.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC-CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh 269 (365)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..++.+...+.....+ .||+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 45689999999999999888765 3458999999 788887764 3456666666433223 699999865432
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
....++.++.+.|+| ||.+++...... ..+++.+.+++. |+++
T Consensus 237 -----~l~~ll~~~~~~Lkp---gG~li~sgi~~~----------------------------~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKP---GGWLILSGILET----------------------------QAQSVCDAYEQG-FTVV 279 (288)
T ss_pred -----HHHHHHHHHHHHcCC---CcEEEEEeCcHh----------------------------HHHHHHHHHHcc-Ccee
Confidence 346789999999999 899888653210 235566666665 8777
Q ss_pred eEEEcC
Q 017835 350 KITDVL 355 (365)
Q Consensus 350 ~~~~~~ 355 (365)
++....
T Consensus 280 ~~~~~~ 285 (288)
T TIGR00406 280 EIRQRE 285 (288)
T ss_pred eEeccC
Confidence 665544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=83.44 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=75.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C--CC--CceEEEeccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A--IP--PADAVLIKCV 267 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~~--~~D~i~~~~v 267 (365)
+.+|||+|||+|.++..+++.. ..+++++|+ +..++.++. ..+++++.+|+.+ . .+ .||+|+++-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 3589999999999999999998 789999999 888787764 4689999999987 2 33 5999999866
Q ss_pred cccCC------hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWN------DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.+... .+....+++++.+.|+| ||.++++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 65332 12346889999999999 89888764
|
... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=90.19 Aligned_cols=155 Identities=16% Similarity=0.238 Sum_probs=111.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC------CCCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH--IECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA------IPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~------~~~~D~i 262 (365)
...-+||||.||.|.+....+..+|. .++...|. +..++..++ .+-++|..+|.++. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35689999999999999999999997 68888898 766776553 34459999999983 3468999
Q ss_pred EeccccccCChhH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc-----cccCHHH
Q 017835 263 LIKCVLHNWNDEE-CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG-----EERNEKE 336 (365)
Q Consensus 263 ~~~~vlh~~~~~~-~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~t~~e 336 (365)
+.+.+...++|.+ +...|+-+++++.| ||.|+....-+..+ .+.....+ ...-+| +.||..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQ-----le~IAr~L----tsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQ-----LEMIARVL----TSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcc-----hHHHHHHH----hcccCCCceEEEecCHHH
Confidence 9999999999976 45579999999999 78777654322211 11111111 000011 3479999
Q ss_pred HHHHHHhcCCccceE-EEcCCceeEEEEeC
Q 017835 337 WAKLFFEAGFSDYKI-TDVLGVRSLIEVYP 365 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~-~~~~~~~~vi~~~~ 365 (365)
+.++++.+||+.++. +..-|.++|-.|++
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999999986644 33356677776654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=87.92 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=75.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh 269 (365)
..++.+|||+|||+|.++..+++. +..+++++|. +.+++.+++ ..+++++.+|+.+..+ .||+|++.-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 456689999999999999998876 3348999999 777776654 2368889999877443 599999864322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 270 NWND-------------------EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 270 ~~~~-------------------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.-+. .....+++++.+.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1111 1135688899999999 99999865443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.8e-09 Score=78.69 Aligned_cols=92 Identities=24% Similarity=0.364 Sum_probs=75.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc------cCCCeEEEeCCCCCCC----CCceEEEeccccccC
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK------SNGNLKYVGGNMFEAI----PPADAVLIKCVLHNW 271 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~i~~~~~d~~~~~----~~~D~i~~~~vlh~~ 271 (365)
+|+|+|||.|..+..+++ .+..+++++|. +.....++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67789999998 66666554 1568899999998832 259999999999875
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+....+++++.+.++| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 44558899999999999 8888765
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-09 Score=88.54 Aligned_cols=110 Identities=16% Similarity=0.316 Sum_probs=80.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------------------
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------------- 241 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------- 241 (365)
+..++.++..+-....+|||||.+|.++..+++.|....+.|+|+ +..+..|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334455543345678999999999999999999998888999999 777887763
Q ss_pred -----------------------CCCeEEEeCCCCC-CCCCceEEEec----cccccCChhHHHHHHHHHHHhcccCCCC
Q 017835 242 -----------------------NGNLKYVGGNMFE-AIPPADAVLIK----CVLHNWNDEECVKILKNCKKAIAINGKA 293 (365)
Q Consensus 242 -----------------------~~~i~~~~~d~~~-~~~~~D~i~~~----~vlh~~~~~~~~~~L~~i~~~L~p~~~g 293 (365)
..+..+...||.. ..+.||+|+|- +|=-+|.|+-...+|++|++.|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 0122233334443 24569999874 333468899999999999999999 5
Q ss_pred cEEEEEee
Q 017835 294 GKVIIIDI 301 (365)
Q Consensus 294 G~lli~e~ 301 (365)
| ++|+|+
T Consensus 203 G-iLvvEP 209 (288)
T KOG2899|consen 203 G-ILVVEP 209 (288)
T ss_pred c-EEEEcC
Confidence 4 555664
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=89.48 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=91.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeE----EEeCCCCC-CC-CCceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLK----YVGGNMFE-AI-PPADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~----~~~~d~~~-~~-~~~D~i~~~~v 267 (365)
..++.++||+|||+|-++++.++.. -.+++++|+ |..++.+++ .+.+. ....+... +. ..||+|+++=
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI- 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI- 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence 3688999999999999999988874 346999999 777777764 33333 33333333 22 2599998854
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
| .+ -..++...+.+.++| ||++++.-. +.+ ..+...+.++++||.
T Consensus 238 L---A~-vl~~La~~~~~~lkp---gg~lIlSGI-l~~---------------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 238 L---AE-VLVELAPDIKRLLKP---GGRLILSGI-LED---------------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred h---HH-HHHHHHHHHHHHcCC---CceEEEEee-hHh---------------------------HHHHHHHHHHhCCCe
Confidence 3 22 236888899999999 888877442 111 245678888999999
Q ss_pred cceEEEcCCceeEE
Q 017835 348 DYKITDVLGVRSLI 361 (365)
Q Consensus 348 ~~~~~~~~~~~~vi 361 (365)
++++....++.++.
T Consensus 283 v~~~~~~~eW~~i~ 296 (300)
T COG2264 283 VVEVLEREEWVAIV 296 (300)
T ss_pred EeEEEecCCEEEEE
Confidence 99998888877764
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-08 Score=87.65 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=87.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCCCC-----CCceEEEeccccc--
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFEAI-----PPADAVLIKCVLH-- 269 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~~~-----~~~D~i~~~~vlh-- 269 (365)
..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+++.. ..||+|++.--..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888888775 234688999988743 2499999863221
Q ss_pred ----cCChh------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc
Q 017835 270 ----NWNDE------------------ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV 327 (365)
Q Consensus 270 ----~~~~~------------------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (365)
..+++ ....+++.+.+.|+| ||++++.-. . +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~~-~-~---------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVETS-E-R---------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-c-c----------------------
Confidence 11111 124788888899999 888775321 0 0
Q ss_pred CccccCHHHHHHHHHhcCCccceEEEc
Q 017835 328 KGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 328 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..+++.+++++.||+.....+-
T Consensus 220 -----~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 220 -----QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred -----hHHHHHHHHHHCCCCceeeEcc
Confidence 2346678888899986544433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-08 Score=81.92 Aligned_cols=160 Identities=17% Similarity=0.219 Sum_probs=96.0
Q ss_pred hhHHHhhCchHHHHHHHHhhcCcc----cchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH
Q 017835 161 FWDYAVRETRLNHFFNEGMASDTR----LTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVV 236 (365)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 236 (365)
-++.+..+|+....|++..+.... ...+.+++.+. ..++...|.|+|||.+.++..+.+ ..++.-+|+-..
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~- 104 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP- 104 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S-
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-
Confidence 356667778777777766655432 22344555554 124457999999999999866542 357888887221
Q ss_pred HhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch
Q 017835 237 ADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT 313 (365)
Q Consensus 237 ~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~ 313 (365)
.++ ++..|+.. |.+ ..|+++++..|- .. ....+|+++.|+||| ||.|.|.|...
T Consensus 105 -----n~~--Vtacdia~vPL~~~svDv~VfcLSLM--GT-n~~~fi~EA~RvLK~---~G~L~IAEV~S---------- 161 (219)
T PF05148_consen 105 -----NPR--VTACDIANVPLEDESVDVAVFCLSLM--GT-NWPDFIREANRVLKP---GGILKIAEVKS---------- 161 (219)
T ss_dssp -----STT--EEES-TTS-S--TT-EEEEEEES-----SS--HHHHHHHHHHHEEE---EEEEEEEEEGG----------
T ss_pred -----CCC--EEEecCccCcCCCCceeEEEEEhhhh--CC-CcHHHHHHHHheecc---CcEEEEEEecc----------
Confidence 233 56789976 766 499999988873 33 347899999999999 99999998632
Q ss_pred hhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 314 ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 314 ~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
++ -..+++.+.++..||+....-.......+.+++
T Consensus 162 ---Rf-------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 162 ---RF-------------ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp ---G--------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred ---cC-------------cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 11 145778888999999988765445555565554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=89.60 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=87.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~vlh 269 (365)
.++.+|||||||||-+++..++.. ..+++++|+ |..++.+++ ..++.+. ...+ ....||+|+++-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~-- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANIL-- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES---
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCC--
Confidence 566899999999999999888764 347999999 777777764 4566553 1111 2246999987432
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
.+....++..+.+.|+| ||.+++.-... + ..+++.+.+++ ||++.
T Consensus 235 ---~~vL~~l~~~~~~~l~~---~G~lIlSGIl~-~---------------------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 235 ---ADVLLELAPDIASLLKP---GGYLILSGILE-E---------------------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp ---HHHHHHHHHHCHHHEEE---EEEEEEEEEEG-G---------------------------GHHHHHHHHHT-TEEEE
T ss_pred ---HHHHHHHHHHHHHhhCC---CCEEEEccccH-H---------------------------HHHHHHHHHHC-CCEEE
Confidence 23457788899999999 77777744321 1 24566778877 99999
Q ss_pred eEEEcCCceeEEEE
Q 017835 350 KITDVLGVRSLIEV 363 (365)
Q Consensus 350 ~~~~~~~~~~vi~~ 363 (365)
+.....++.+++-=
T Consensus 280 ~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 280 EEREEGEWVALVFK 293 (295)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEEEE
Confidence 99988888777543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-08 Score=85.90 Aligned_cols=104 Identities=16% Similarity=0.301 Sum_probs=87.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-IP 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~~ 257 (365)
..++.... +.++.+|+|.|.|+|.++..|+.. .|..+++.+|. +...+.|.+ .+++++..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 44666677 899999999999999999999974 68789999998 888887775 56799999999884 33
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.+|.+++ +++++ .+.+.+++++|+| ||.+.++.+..
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkp---gg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKP---GGVVVVYSPTV 198 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCC---CcEEEEEcCCH
Confidence 5999988 67887 7899999999999 99999987654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-08 Score=92.11 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=88.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
.+++.+|||+|||+|.++..++.. +.+++++|. +.++..++. ...+.+..+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567789999999999999887654 678999999 888876653 2347889999987 543 5999999532
Q ss_pred cc-------cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 268 LH-------NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 268 lh-------~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
.. +...+...++|+++++.|+| ||++++.-+. ..+|.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~-------------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT-------------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC-------------------------------CCCHHHH
Confidence 21 11123347899999999999 8998876431 1134567
Q ss_pred HHhcCCccceEEEc
Q 017835 341 FFEAGFSDYKITDV 354 (365)
Q Consensus 341 l~~aGf~~~~~~~~ 354 (365)
++++|| ++..+..
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 889999 8777665
|
This family is found exclusively in the Archaea. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.8e-08 Score=86.79 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=92.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-CceEEEec--ccccc--
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PADAVLIK--CVLHN-- 270 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~D~i~~~--~vlh~-- 270 (365)
+|||+|||+|..++.++..+|+++++++|+ +..++.|+. ..++.++.+|.+++.+ .||+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888888875 2566677779999766 69999985 22221
Q ss_pred -CC------------------hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccc
Q 017835 271 -WN------------------DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEE 331 (365)
Q Consensus 271 -~~------------------~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 331 (365)
.. -+...+++.++.+.|+| || ++++|.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g-~l~le~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GG-VLILEIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---Cc-EEEEEECCC---------------------------
Confidence 10 12345778888889998 44 444443211
Q ss_pred cCHHHHHHHHHhcC-CccceEEEc-CCceeEEEE
Q 017835 332 RNEKEWAKLFFEAG-FSDYKITDV-LGVRSLIEV 363 (365)
Q Consensus 332 ~t~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi~~ 363 (365)
..+++.+++.+.| |..+.+..- .+...++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 3567789999999 665666555 344444443
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-08 Score=86.27 Aligned_cols=96 Identities=13% Similarity=0.197 Sum_probs=73.3
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---CCc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---PPA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~~~ 259 (365)
++..+. ..+..+|||||||+|..+..+++.. .+++++|. +.+++.+++ ..+++++.+|..+.. ..|
T Consensus 70 l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 70 MTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 344444 5678899999999999998877774 37999998 777777764 346999999987743 259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
|+|++...++++ .+.+.+.|+| ||++++.-
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence 999998776544 3456788999 89888754
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=85.84 Aligned_cols=95 Identities=14% Similarity=0.277 Sum_probs=71.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCCC---------CC--CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA---------IP--PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~--~~D~i~~~ 265 (365)
..++.+|||+|||+|.++..+++.+ +..+++++|+.+.. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4678899999999999999998886 56789999994433 245788888898762 23 49999985
Q ss_pred cccc---cCC------hhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 266 CVLH---NWN------DEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 266 ~vlh---~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
...| .|. .+...++|+++++.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4322 121 12236789999999999 8988875
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.2e-09 Score=88.15 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=97.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCe-EEEeC---CCCC--CCCCceE
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNL-KYVGG---NMFE--AIPPADA 261 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i-~~~~~---d~~~--~~~~~D~ 261 (365)
+++...+ ..+..++||+|||||..+..|... --+.+++|+ ..|++++.+..-. ++.+. +|.. ....+|+
T Consensus 116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHhcc--CCccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 3444444 445899999999999999998877 346899999 8899998752111 11111 2333 2336999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
|+...||-++..- ..++.-+...|+| ||-+.+.-...++..... +.+..++ ..+..-+++++
T Consensus 192 i~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f~-l~ps~Ry------------AH~~~YVr~~l 253 (287)
T COG4976 192 IVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDDGGFV-LGPSQRY------------AHSESYVRALL 253 (287)
T ss_pred hhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCCCCee-cchhhhh------------ccchHHHHHHH
Confidence 9999999888765 5788999999999 787777544444332110 0000000 12566678999
Q ss_pred HhcCCccceEEEc
Q 017835 342 FEAGFSDYKITDV 354 (365)
Q Consensus 342 ~~aGf~~~~~~~~ 354 (365)
+..||+++++.++
T Consensus 254 ~~~Gl~~i~~~~t 266 (287)
T COG4976 254 AASGLEVIAIEDT 266 (287)
T ss_pred HhcCceEEEeecc
Confidence 9999999988776
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-08 Score=84.96 Aligned_cols=97 Identities=14% Similarity=0.266 Sum_probs=70.0
Q ss_pred CCCeEEEecCCccH--HHHH--HHHH----CC-CCeEEEeec-hHHHHhccc----------------------------
Q 017835 200 GLNTLVDVGGGTGT--LASA--IAKK----FP-HIECTVFDQ-PHVVADLKS---------------------------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~--~~~~--l~~~----~p-~~~~~~~D~-~~~~~~a~~---------------------------- 241 (365)
+..+|...||++|. ++++ +.+. .+ ..++.+.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999994 3333 3331 12 468899999 888888862
Q ss_pred ------CCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 242 ------NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 242 ------~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
..+|+|...|+.+ +.+ .+|+|+|.+||-+++++...++++++++.|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3589999999999 322 59999999999999999999999999999999 8888774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-08 Score=90.30 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCC--C--CCCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFE--A--IPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~--~--~~~~D~i 262 (365)
++..+||+||||.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4568999999999999999997655568999999 888888774 4689999999876 2 2259999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++...-+..+.. -..++++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 986443322221 136789999999999 8877753
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.5e-08 Score=84.42 Aligned_cols=146 Identities=16% Similarity=0.219 Sum_probs=93.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC-CceEEEeccccccCChhHHH
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP-PADAVLIKCVLHNWNDEECV 277 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~-~~D~i~~~~vlh~~~~~~~~ 277 (365)
...++||||.|-|..+..++..+.+ +...+. +.|....++ ..++++..|-....+ .||+|.|.++|....+| .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4679999999999999999999876 555555 777776664 445555443333223 69999999999888888 7
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcccc--CHHHHHHHHHhcCCccceEEEcC
Q 017835 278 KILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEER--NEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 278 ~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
.+|+.++++|+| +|++++.=...-.+..+. .. .............|..+ ....+.+.|+.+||+++++...|
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~pyVE~--~~-g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRPYVEF--GG-GKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccccEEc--CC-CCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 899999999999 788776543221111100 00 00000000001122211 22334488999999999999886
Q ss_pred C
Q 017835 356 G 356 (365)
Q Consensus 356 ~ 356 (365)
.
T Consensus 243 Y 243 (265)
T PF05219_consen 243 Y 243 (265)
T ss_pred c
Confidence 3
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=85.29 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCeEEEecCCccH--HHHH--HHHHCC----CCeEEEeec-hHHHHhccc------------------------------
Q 017835 201 LNTLVDVGGGTGT--LASA--IAKKFP----HIECTVFDQ-PHVVADLKS------------------------------ 241 (365)
Q Consensus 201 ~~~iLDiG~G~G~--~~~~--l~~~~p----~~~~~~~D~-~~~~~~a~~------------------------------ 241 (365)
..+|...||++|. ++++ +.+..+ +.++++.|+ +.+++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999994 3333 334332 467999999 888887763
Q ss_pred -------CCCeEEEeCCCCC-CCC---CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 242 -------NGNLKYVGGNMFE-AIP---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 242 -------~~~i~~~~~d~~~-~~~---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
..+|+|...|+.+ ++| .||+|+|.+++.|++++...+++++++++|+| ||.|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 1467899999998 433 59999999999999999899999999999999 8877663
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-09 Score=68.66 Aligned_cols=49 Identities=45% Similarity=0.868 Sum_probs=42.4
Q ss_pred HHHHHHHHcCcccccccCC-CCCCHHHHHHHcC-CCCCCcchHHHHHHHHH
Q 017835 34 MSLKCAIQLGIPDIIHNHA-KPMTLNQLLTTLQ-IHPTKTQCVYHLMRILV 82 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~-~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~ 82 (365)
.+|++|++|||||+|.+.| +++|+.||+.++. .+|.++..++|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999875 7999999999999 77767789999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=80.59 Aligned_cols=98 Identities=12% Similarity=0.263 Sum_probs=78.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC---C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP---P 258 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~---~ 258 (365)
.+++.+. .+++.+|||||||+|..+.-|++.-. +++.+|. ++..+.|++ ..+|.++++|-..-+| +
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 4555566 78899999999999999999988743 8999998 787777774 4579999999998444 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
||.|++....-..|+. +.+-|+| ||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~~--------Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA--------LLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH--------HHHhccc---CCEEEEEEc
Confidence 9999998877655543 4455899 999998665
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-08 Score=84.09 Aligned_cols=100 Identities=15% Similarity=0.311 Sum_probs=73.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-- 257 (365)
..+++.+. ++++.+|||||||+|.++..|+... +..+++.+|. +...+.+++ ..+|+++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34566666 7899999999999999999998874 4457899998 888887775 5689999999887443
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+||.|++.......+. .+.+-|++ ||+|++.-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEE
Confidence 5999999887754443 35566899 89888743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=83.36 Aligned_cols=126 Identities=17% Similarity=0.318 Sum_probs=92.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI-- 256 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-- 256 (365)
.++..++ +.++.+|||.|.|+|.++..|++. .|.-++..+|. ++..+.|++ .+++++..+|+.+ -+
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4556666 899999999999999999999975 68889999998 777777764 5789999999965 23
Q ss_pred ---CCceEEEeccccccCChhHHHHHHHHHHHhc-ccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcccc
Q 017835 257 ---PPADAVLIKCVLHNWNDEECVKILKNCKKAI-AINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEER 332 (365)
Q Consensus 257 ---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L-~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 332 (365)
..+|.|++ +++++ ...+..+.++| +| ||++.++-+....
T Consensus 109 ~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~---gG~i~~fsP~ieQ--------------------------- 151 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDP--WEAIPHAKRALKKP---GGRICCFSPCIEQ--------------------------- 151 (247)
T ss_dssp T-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EE---EEEEEEEESSHHH---------------------------
T ss_pred cccCcccEEEE-----eCCCH--HHHHHHHHHHHhcC---CceEEEECCCHHH---------------------------
Confidence 24899887 67877 67899999999 88 8999887764321
Q ss_pred CHHHHHHHHHhcCCccceEEEc
Q 017835 333 NEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.....+.|++.||..+++...
T Consensus 152 -v~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 152 -VQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHCCCeeeEEEEE
Confidence 123355667788887777655
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=86.95 Aligned_cols=98 Identities=15% Similarity=0.252 Sum_probs=73.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---CC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---PP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~~ 258 (365)
+++.++ .+++.+|||||||+|.++..+++..+. .+++++|. +.+++.+++ .+++.++.+|..+.. ..
T Consensus 72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 334444 567789999999999999999998753 47999999 888877664 457999999987632 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
||+|++...+++. ...+.+.|+| ||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 9999998665433 2345678999 89888743
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.3e-08 Score=80.34 Aligned_cols=87 Identities=18% Similarity=0.387 Sum_probs=64.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D 260 (365)
.+++.++ ..++.+|||||||+|.++..++++ ..+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .+|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 4555555 567789999999999999999988 578999999 778877764 3589999999988 444 388
Q ss_pred EEEeccccccCChhHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L 280 (365)
.|+++ ..++...+...+++
T Consensus 80 ~vi~n-~Py~~~~~~i~~~l 98 (169)
T smart00650 80 KVVGN-LPYNISTPILFKLL 98 (169)
T ss_pred EEEEC-CCcccHHHHHHHHH
Confidence 88765 44445444333333
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-07 Score=78.61 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=107.1
Q ss_pred hHHHhhCchHHHHHHHHhhcCcc----cchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHH
Q 017835 162 WDYAVRETRLNHFFNEGMASDTR----LTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVA 237 (365)
Q Consensus 162 ~~~~~~~~~~~~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 237 (365)
++.+..+|...+.|+....+... .....+++.+.. .+....|.|+|||-+.++. . ...++..+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~--~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR-RPKNIVIADFGCGEAKIAS---S--ERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh-CcCceEEEecccchhhhhh---c--cccceeeeeeec---
Confidence 44556677777777776665432 223456666651 3567899999999999876 1 123577777522
Q ss_pred hcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchh
Q 017835 238 DLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE 314 (365)
Q Consensus 238 ~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 314 (365)
.+-.++.+|+.+ |.+ +.|+++++..|- .. ....+++++.|+|+| ||.++|.|...
T Consensus 210 -----~~~~V~~cDm~~vPl~d~svDvaV~CLSLM--gt-n~~df~kEa~RiLk~---gG~l~IAEv~S----------- 267 (325)
T KOG3045|consen 210 -----VNERVIACDMRNVPLEDESVDVAVFCLSLM--GT-NLADFIKEANRILKP---GGLLYIAEVKS----------- 267 (325)
T ss_pred -----CCCceeeccccCCcCccCcccEEEeeHhhh--cc-cHHHHHHHHHHHhcc---CceEEEEehhh-----------
Confidence 233456889988 655 599999887763 32 347889999999999 99999988521
Q ss_pred hhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 315 TQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
+.-+...+.+.|...||.+..+.....++.+.++.
T Consensus 268 ---------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefk 302 (325)
T KOG3045|consen 268 ---------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFK 302 (325)
T ss_pred ---------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEe
Confidence 11145567888999999987776666666666654
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=86.14 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=73.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CC-C-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AI-P-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~-~-~~D~i 262 (365)
++.++||+||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... .. + .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999987633458999999 778887764 3689999999754 33 2 59999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++-..-+.-+.. -..++++.+++.|+| ||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence 985433222211 135789999999999 8887653
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=87.84 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=75.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCCC---CC-Cce
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFEA---IP-PAD 260 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~---~~-~~D 260 (365)
.+..+||+||||.|..+..+++..+..+++.+|+ +.+++.|++ .+|++++.+|..+- .+ .||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999999999999998666679999999 888888773 46999999998872 22 599
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 261 AVLIKCVLH---NWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 261 ~i~~~~vlh---~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+|++...-. ....-...++++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999863210 11112236789999999999 8887765
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=87.37 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=73.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------------CCCeEEEeCCCCCC-------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------------NGNLKYVGGNMFEA------- 255 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~~------- 255 (365)
+..+|||+|||.|+-+..+..... .+++++|+ ...++.|++ .-...++.+|.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 779999999999999888888643 47999999 777777663 12456788888762
Q ss_pred CC--CceEEEeccccccC--ChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 256 IP--PADAVLIKCVLHNW--NDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 256 ~~--~~D~i~~~~vlh~~--~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.+ .||+|-|...+|+. +.+.+..+|+++.+.|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence 12 59999999999985 567788899999999999 88887764
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=85.04 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=74.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---C-CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---A-IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~-~~~~D~i~ 263 (365)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766678999999 778777664 3578888888765 1 23599999
Q ss_pred eccccccCChhH--HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDEE--CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+...-..-+... ..++++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 865432222222 36889999999999 8888875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=79.79 Aligned_cols=96 Identities=19% Similarity=0.335 Sum_probs=69.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC----CC--CceEEEeccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA----IP--PADAVLIKCV 267 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~~--~~D~i~~~~v 267 (365)
...+||||||.|.++..++..+|+..++|+|. ...+..+.. ..++.++.+|...- ++ +.|-|++.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 34999999999999999999999999999998 555555442 78999999998871 22 4677666432
Q ss_pred cccCChh-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWNDE-------ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
= -|+.. -...+|+.+++.|+| ||.|.+..
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 1 12211 125789999999999 89887765
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-07 Score=90.75 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=74.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCC---CCC-Cc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFE---AIP-PA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~---~~~-~~ 259 (365)
++.++|||||||+|..+..+++. |. .+++.+|+ +++++.+++ .+|++++.+|..+ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45689999999999999999874 55 79999999 889888775 2689999999887 223 59
Q ss_pred eEEEeccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 260 DAVLIKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 260 D~i~~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999997433221111 124689999999999 8887764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-07 Score=79.02 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceEEEeccccccCC-
Q 017835 201 LNTLVDVGGGTGTLASAIAKKF---PHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWN- 272 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~- 272 (365)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++ ..++.++.+|+.. +.. .||+|+++--.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998874 4678999999 888888886 4578999999986 333 599999975554221
Q ss_pred -h--------hHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 273 -D--------EECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 273 -~--------~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+ .-...+++++.++++| |.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 1 1235688899997776 66633
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.6e-07 Score=79.13 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCCeEEEecCCcc----HHHHHHHHHCC-----CCeEEEeec-hHHHHhccc----------------------------
Q 017835 200 GLNTLVDVGGGTG----TLASAIAKKFP-----HIECTVFDQ-PHVVADLKS---------------------------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 241 (365)
+.-+|.-+||++| .++..|.+.+| .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 34555666675 478899999 888888762
Q ss_pred -------CCCeEEEeCCCCCCC--C-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 242 -------NGNLKYVGGNMFEAI--P-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 242 -------~~~i~~~~~d~~~~~--~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
...|.|..+|++++. + .+|+|+|.+||-+++.+...+++++.+..|+| ||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 346889999999843 3 49999999999999999889999999999999 8888873
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-07 Score=80.79 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=74.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---------CCCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---------IPPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---------~~~~ 259 (365)
..+.++|||||||+|.-+..++...+ +.+++.+|. ++..+.+++ .++|+++.+|..+. .++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998764 679999999 777777764 46899999999762 1359
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|+|++-. ..+.-..++..+.+.|+| ||.|++-+.
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKV---GGIIAFDNT 179 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CeEEEEEcC
Confidence 9998842 234446789999999999 776555443
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=81.22 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=70.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe--CCCCC----CC---C-CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG--GNMFE----AI---P-PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~--~d~~~----~~---~-~~D~i~~~~v 267 (365)
...+.++|||||+|..++.++..+. ++++.|. +.|++.+++..+++... ..|.+ ++ + +.|+|++..+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3445999999999988888888864 6899999 99999999755544322 22222 11 2 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+|-++- .++.+.++++||+ +||.+.|-.
T Consensus 110 ~HWFdl---e~fy~~~~rvLRk--~Gg~iavW~ 137 (261)
T KOG3010|consen 110 VHWFDL---ERFYKEAYRVLRK--DGGLIAVWN 137 (261)
T ss_pred HHhhch---HHHHHHHHHHcCC--CCCEEEEEE
Confidence 986655 4689999999998 256666643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-07 Score=86.97 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=79.9
Q ss_pred HhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC---C-C-Cc
Q 017835 191 IHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA---I-P-PA 259 (365)
Q Consensus 191 ~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~-~-~~ 259 (365)
...++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ ..+++++.+|+.+. . + .|
T Consensus 237 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 237 ATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 33444 56778999999999999999999988789999999 888887764 23478899999762 1 2 49
Q ss_pred eEEEecc------cccc-------CChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 260 DAVLIKC------VLHN-------WNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 260 D~i~~~~------vlh~-------~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|.|++.- ++.+ ....+ ..++|+++.+.|+| ||++++.....
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 9998532 1111 11111 24789999999999 99998877544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.6e-07 Score=93.59 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=55.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------------------CCCeEEEeCCCCCCCC
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------------------NGNLKYVGGNMFEAIP 257 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~i~~~~~d~~~~~~ 257 (365)
+.+|||+|||+|..++.+++.+|..+++++|+ +.+++.++. .+|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888887753 1479999999998543
Q ss_pred ----CceEEEec
Q 017835 258 ----PADAVLIK 265 (365)
Q Consensus 258 ----~~D~i~~~ 265 (365)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999885
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-07 Score=87.02 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=80.7
Q ss_pred HhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-C----C
Q 017835 191 IHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-I----P 257 (365)
Q Consensus 191 ~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~----~ 257 (365)
...++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ ..++.+..+|.... . .
T Consensus 231 ~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 231 ATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 33444 56778999999999999999999888789999999 888877664 11334467776652 2 2
Q ss_pred CceEEEec------cccccCChh--------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 258 PADAVLIK------CVLHNWNDE--------------ECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 258 ~~D~i~~~------~vlh~~~~~--------------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.||.|++- .++++.++- ...++|+++.+.||| ||+|++.......
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~ 373 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP 373 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 49999862 455544431 126899999999999 9999998776643
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.2e-07 Score=79.27 Aligned_cols=140 Identities=22% Similarity=0.327 Sum_probs=82.1
Q ss_pred CCCeEEEecCCcc--HHHHHHHH-HCCCCeEEEeec-hHHHHhccc----CCC--eEEEeCCCCCCC-----C-------
Q 017835 200 GLNTLVDVGGGTG--TLASAIAK-KFPHIECTVFDQ-PHVVADLKS----NGN--LKYVGGNMFEAI-----P------- 257 (365)
Q Consensus 200 ~~~~iLDiG~G~G--~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~----~~~--i~~~~~d~~~~~-----~------- 257 (365)
+...+||||||-= ....++++ ..|+++++.+|. |-++..++. ..+ ..++.+|+.++. |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 7789999999954 34555655 489999999999 778887764 344 889999999841 1
Q ss_pred --CceEEEeccccccCCh-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCH
Q 017835 258 --PADAVLIKCVLHNWND-EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNE 334 (365)
Q Consensus 258 --~~D~i~~~~vlh~~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~ 334 (365)
..=.+++..+||+++| ++...+++.++..|.| |+.|.|.....+... . ........+.........||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p-~----~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAP-E----RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSH-H----HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCH-H----HHHHHHHHHHcCCCCceecCH
Confidence 1335788999999987 6778999999999999 777777766543221 1 112233333333346778999
Q ss_pred HHHHHHHHhcCCccc
Q 017835 335 KEWAKLFFEAGFSDY 349 (365)
Q Consensus 335 ~e~~~ll~~aGf~~~ 349 (365)
+|+.++|. ||.++
T Consensus 220 ~ei~~~f~--g~elv 232 (267)
T PF04672_consen 220 EEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHCCT--TSEE-
T ss_pred HHHHHHcC--CCccC
Confidence 99999987 77654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.9e-07 Score=85.64 Aligned_cols=104 Identities=18% Similarity=0.289 Sum_probs=77.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEec--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIK-- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~-- 265 (365)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|+.+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45678999999999999998888653 468999999 888887764 3468999999877323 49999862
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 ----CVL-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 ----~vl-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.++ .+++.+. -.++|+++.+.|+| ||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 111 1223222 24689999999999 899998776654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.4e-07 Score=85.82 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=76.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~~-~~D~i~~~ 265 (365)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4667899999999999999999886 6789999999 777777654 24589999999762 33 59999874
Q ss_pred cc------cccCC-------hhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 CV------LHNWN-------DEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ~v------lh~~~-------~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
-- +.+.+ ..+ ..++|+++.+.|+| ||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 22 11111 111 24689999999999 89988665444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=68.23 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=70.8
Q ss_pred HHhhccccccCCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC----CceEEE
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGT-LASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP----PADAVL 263 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~----~~D~i~ 263 (365)
+.+.++ .....+|||||||+|. .+..|.+. +..++++|. +..++.+++ ..+.++.+|++++-. ++|+|+
T Consensus 8 l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 444454 3345899999999996 77777765 679999999 888887764 567899999999643 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.. +.++.+.-+.++++... .-++|.-.
T Consensus 83 sir-----pp~el~~~~~~la~~~~-----~~~~i~~l 110 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN-----VPLIIKPL 110 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC-----CCEEEEcC
Confidence 866 55566666777777663 45555443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=84.73 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=78.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C----C--CCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A----I--PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~----~--~~~D~i 262 (365)
..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 5677899999999999999999875 4568999999 778877764 3568999999876 2 1 149999
Q ss_pred Eec------cccccCChh-------H-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 263 LIK------CVLHNWNDE-------E-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 263 ~~~------~vlh~~~~~-------~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
++. .++++.++. . -.++|+++.+.||| ||+|+......
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 973 344443331 1 26889999999999 99988876544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-06 Score=79.21 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEe----CCCCCCC--C--CceEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVG----GNMFEAI--P--PADAV 262 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~----~d~~~~~--~--~~D~i 262 (365)
...++||||||+|.....++.+.++.+++++|+ +..++.|+. .++|++.. .+++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999999888888888999999999 888888774 24677753 2333321 2 49999
Q ss_pred EeccccccCChhH---HHHHHHHHH----------------HhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh
Q 017835 263 LIKCVLHNWNDEE---CVKILKNCK----------------KAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM 323 (365)
Q Consensus 263 ~~~~vlh~~~~~~---~~~~L~~i~----------------~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 323 (365)
+|+--+|.-..+. ...-.+++. +.+.+ ||.+-++..+..+... ...-..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~------~~~~~gw-- 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKA------FAKQVLW-- 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHH------HHhhCcE--
Confidence 9987776433321 112222222 22234 5665555444433210 0001111
Q ss_pred hhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 324 MVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 324 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
....-++.-+.+.+.+.|++.|.+.+++..+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 0112255569999999999999988888777
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.6e-07 Score=79.07 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=76.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------CCCeEEEeCCCCCC-----C---
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------NGNLKYVGGNMFEA-----I--- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~~-----~--- 256 (365)
.++...++|+|||.|+-++..-++.-+ .++++|+ ...++++++ .-.+.|+.+|.+.. +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 367889999999999999988877432 7899999 455777764 22467889998861 2
Q ss_pred -CCceEEEecccccc-C-ChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 257 -PPADAVLIKCVLHN-W-NDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 257 -~~~D~i~~~~vlh~-~-~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|.||+|-|..++|+ | +.+.+..+|+++.+.|+| ||.++-.
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIgT 236 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIGT 236 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEEe
Confidence 34999999999997 3 456788999999999999 7766654
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-07 Score=75.80 Aligned_cols=93 Identities=13% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCe--EEEeCCCCC--CCC--CceEEEeccccc---
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNL--KYVGGNMFE--AIP--PADAVLIKCVLH--- 269 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i--~~~~~d~~~--~~~--~~D~i~~~~vlh--- 269 (365)
...-|||||||+|.-+..|... +...+++|+ |.|++.+.+ ..+ .++.+|+-+ |++ .||.+++...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3789999999999998887765 578999999 999999885 323 467778887 443 399987754442
Q ss_pred ------cCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 270 ------NWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 270 ------~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
|.|......++..++..|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 23445566788889999998 776655
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=73.64 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=67.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCCC------C-CceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEAI------P-PADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~------~-~~D~ 261 (365)
..++.+|||+|||+|..++.++..++..+++..|.++.++..+. ..++++...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999998877789999998666665543 367888888876622 2 4999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|+.+.++|+ ++....+++.+.+.|+| +|.+++.-...
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999984 55668899999999999 67766666544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=77.74 Aligned_cols=82 Identities=16% Similarity=0.362 Sum_probs=63.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCCceE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPPADA 261 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~~D~ 261 (365)
..+++.++ ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 44555555 567789999999999999999998 358999999 778877764 3689999999988 6777898
Q ss_pred EEeccccccCChh
Q 017835 262 VLIKCVLHNWNDE 274 (365)
Q Consensus 262 i~~~~vlh~~~~~ 274 (365)
|+++-. ++++.+
T Consensus 95 Vv~NlP-y~i~s~ 106 (258)
T PRK14896 95 VVSNLP-YQISSP 106 (258)
T ss_pred EEEcCC-cccCcH
Confidence 877544 445543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.3e-07 Score=76.86 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=76.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---------CCCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---------IPPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---------~~~~ 259 (365)
..+.++||+||+++|.-+..+++..| +.+++.+|. +...+.|++ .++|+++.+|..+. ...|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45778999999999999999999876 689999999 777777764 57999999998761 1259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
|+|++-. ...+-...+..+.+.|+| |.++|+|.+..
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEccccc
Confidence 9999854 344557889999999999 66666665553
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=84.14 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-----C--CCceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-----I--PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-----~--~~~D~i~ 263 (365)
..++.+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+. + ..||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4567899999999999999999885 68999999 888888774 35799999998752 2 2489998
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+.- |.....++++.+.+ ++| ++.++|.
T Consensus 373 ~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyvS 399 (443)
T PRK13168 373 LDP-----PRAGAAEVMQALAK-LGP---KRIVYVS 399 (443)
T ss_pred ECc-----CCcChHHHHHHHHh-cCC---CeEEEEE
Confidence 732 21122345555555 577 4555553
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.5e-06 Score=76.00 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=76.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~~~D~i~~~~ 266 (365)
..++.+|||+|||+|..+..+++... ..+++++|. +..++.+++ ..+++++..|... + .+.||.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 46778999999999999999988764 358999999 888777664 3568888888765 2 23599998732
Q ss_pred ------ccc-------cCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 267 ------VLH-------NWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 267 ------vlh-------~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
++. .|+++. ..++|+++.+.|+| ||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 221 122222 24699999999999 898877665443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=77.72 Aligned_cols=83 Identities=14% Similarity=0.320 Sum_probs=61.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCCce-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPPAD- 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~~D- 260 (365)
..+++.++ ..++.+|||||||+|.++..|++.++ +++++|. +.+++.++. ..+++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 44555555 56778999999999999999999975 5888888 777777764 3689999999988 555565
Q ss_pred -EEEeccccccCChh
Q 017835 261 -AVLIKCVLHNWNDE 274 (365)
Q Consensus 261 -~i~~~~vlh~~~~~ 274 (365)
.+++++.-+|++.+
T Consensus 95 ~~~vvsNlPy~i~~~ 109 (253)
T TIGR00755 95 QLKVVSNLPYNISSP 109 (253)
T ss_pred cceEEEcCChhhHHH
Confidence 34445555555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=78.81 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=61.0
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCCCc--e
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIPPA--D 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~~~--D 260 (365)
..+++.+. ..++.+|||||||+|.++..++++.+ +++++|. +.+++.+++ ..+++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34455555 56778999999999999999999965 8999999 888888765 3689999999987 44443 5
Q ss_pred EEEeccccccCChh
Q 017835 261 AVLIKCVLHNWNDE 274 (365)
Q Consensus 261 ~i~~~~vlh~~~~~ 274 (365)
.|+. +.-++.+.+
T Consensus 108 ~vv~-NlPY~iss~ 120 (272)
T PRK00274 108 KVVA-NLPYNITTP 120 (272)
T ss_pred eEEE-eCCccchHH
Confidence 5554 444445443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.9e-06 Score=80.91 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=77.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C-C-C-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A-I-P-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~-~-~~D~i~~~ 265 (365)
..++.+|||+|||+|..+..++... ++.+++++|+ +..++.+++ ..+++++.+|..+ + . + .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5677899999999999999999875 4679999999 888887764 3468899999876 2 1 2 49999873
Q ss_pred c------cccc-------CChh-------HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 266 C------VLHN-------WNDE-------ECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 266 ~------vlh~-------~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
- ++.. ++.+ .-.++|.++.+.|+| ||.++........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~ 371 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTK 371 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCCh
Confidence 2 2221 1111 126789999999999 8988777665543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-06 Score=67.30 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=88.8
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-C-----CC
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-A-----IP 257 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~-----~~ 257 (365)
+..+...++ ...+.-|||+|.|+|.++.+++++. +.-..+.++. ++......+ .+.+.++.||.+. . .+
T Consensus 37 A~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 37 ARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 344444455 6778899999999999999999874 5557788887 666666654 6777789999887 2 22
Q ss_pred --CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 258 --PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 258 --~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.||.|++.--+-.++.....++|+++...|++ ||.++.+...
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 49999999999899999999999999999999 8988887765
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=72.62 Aligned_cols=100 Identities=15% Similarity=0.245 Sum_probs=80.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEe-CCCCC---C--CCCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVG-GNMFE---A--IPPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~-~d~~~---~--~~~~D~i 262 (365)
.++.++|||||.+.|.-++.|+...| +.+++.+|. ++..+.|++ .++|+++. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56889999999999999999999999 889999999 888888875 56788888 57776 2 2469999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
++-. ....-.+.|..+.+.|+| |.|+++|.+....
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 8843 334447889999999999 6677777766554
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.4e-06 Score=75.02 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=76.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~------~~~ 259 (365)
..+.++|||||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.+|..+. . +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999998765 668999998 777777764 57999999998762 1 359
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
|+|++-. +...-..++..+.+.|+| ||. +++|.++-.
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGv-IV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGV-IVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CcE-EEEecCccC
Confidence 9998843 344567889999999999 555 555555433
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.6e-06 Score=72.48 Aligned_cols=109 Identities=12% Similarity=0.209 Sum_probs=65.9
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEEEeCCC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKYVGGNM 252 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d~ 252 (365)
.+++.+. +.+...++|||||.|......+-..+--+++|+++ +...+.+.. ..++++..+||
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3555555 67889999999999999888877765445999998 555444331 46788999999
Q ss_pred CCC------CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 253 FEA------IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 253 ~~~------~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.++ +..+|+|++++.+ ++++ ...-|++....||+ |.+++-.....+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCPR 163 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-T
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCCC
Confidence 983 2469999999886 4554 45556777788998 6666655555444
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.1e-06 Score=76.41 Aligned_cols=88 Identities=22% Similarity=0.400 Sum_probs=67.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~ 258 (365)
..+++... ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34555555 5677899999999999999999874 57899998 778877664 3689999999988 5667
Q ss_pred ceEEEeccccccCChhHHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L 280 (365)
+|+|++ +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 887765 556667766555555
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.8e-06 Score=73.00 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCCC-ceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIPP-ADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~~-~D~i~~~~vlh~ 270 (365)
.++.|||||||+|-++.-.+.+. ..++..++..+|.+.|++ .+||++++|-+.+ ++|+ .|++++--.=+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 45899999999999988777664 458889998899888875 6899999999988 7885 999988543333
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+-.+.-.+---.+++.|+| .|+++
T Consensus 256 L~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC---CCccc
Confidence 3333333444467799999 68776
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.8e-06 Score=74.87 Aligned_cols=103 Identities=19% Similarity=0.329 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc----CCCeEE--EeCCCCC---CCCCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS----NGNLKY--VGGNMFE---AIPPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~~i~~--~~~d~~~---~~~~~D~i~~~~v 267 (365)
-...+|||+|+|+|..+-++...++.. +++.+|. +.+.+.++. ...... ...++.. +++..|+|+++++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 345799999999999988888888744 6889998 777776653 111110 1112221 3445799999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
|-.+++....++++++.+.+. +.|+|+|+-.+..
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred hhcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 999988888889999988875 5899999866554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.9e-06 Score=71.35 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=70.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----C-CCeEEEeCCCCC--C-C-C--CceEEEecccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----N-GNLKYVGGNMFE--A-I-P--PADAVLIKCVL 268 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~i~~~~~d~~~--~-~-~--~~D~i~~~~vl 268 (365)
..+||||||.|.++..+++++|+..++|+++ ...+..+.+ . .++.++++|... + . + +.|-|.+...=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999998 555444432 3 389999999877 1 2 2 46666553321
Q ss_pred ccCChh-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 269 HNWNDE-------ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 269 h~~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
-|+.. -...+|+.+.+.|+| ||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 12211 124789999999999 89888764
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=68.72 Aligned_cols=121 Identities=16% Similarity=0.176 Sum_probs=90.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC-CCC-----CceEEEeccccccCChh
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE-AIP-----PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~-----~~D~i~~~~vlh~~~~~ 274 (365)
..++|||||=+....+. .++-..++-+|+.. ..-.+...||++ |.| .||+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999987665433 34556789999733 122345778888 665 39999999999999865
Q ss_pred -HHHHHHHHHHHhcccCCCCcE-----EEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 275 -ECVKILKNCKKAIAINGKAGK-----VIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 275 -~~~~~L~~i~~~L~p~~~gG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
+.-++++++++.|+| +|. |+|+-+..- ..|.+..+.+.|..+++.-||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 678999999999999 788 777643210 13566668999999999999999
Q ss_pred ceEEEcCC
Q 017835 349 YKITDVLG 356 (365)
Q Consensus 349 ~~~~~~~~ 356 (365)
++.+...-
T Consensus 177 ~~~~~~~K 184 (219)
T PF11968_consen 177 VKYKKSKK 184 (219)
T ss_pred EEEEecCe
Confidence 88876654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.8e-06 Score=76.21 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=72.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCC---C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEA---I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~-~~~D~i~ 263 (365)
...++||.||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+- . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998766678999999 888888874 46899999998872 2 2599999
Q ss_pred eccccccCC--hh---HHHHHHH-HHHHhcccCCCCcEEEE
Q 017835 264 IKCVLHNWN--DE---ECVKILK-NCKKAIAINGKAGKVII 298 (365)
Q Consensus 264 ~~~vlh~~~--~~---~~~~~L~-~i~~~L~p~~~gG~lli 298 (365)
+-.. ..+. .. -..++++ .+++.|+| ||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 8631 1110 00 1246787 89999999 777655
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.6e-06 Score=69.18 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=73.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhccc----------------CCCeEEEeC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK--FPHIECTVFDQ-PHVVADLKS----------------NGNLKYVGG 250 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~ 250 (365)
+++.+...+.++.+.||||+|+|.++..++.. .++...+|+|. ++.++..++ ..++.++.|
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 44455545788999999999999999888754 34444588888 888876653 457889999
Q ss_pred CCCCC---CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 251 NMFEA---IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 251 d~~~~---~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|...- ..+||.|++-... .++.+++-.-|+| ||+++|-
T Consensus 152 Dgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred CccccCCccCCcceEEEccCc--------cccHHHHHHhhcc---CCeEEEe
Confidence 99882 3369999986432 3455667777888 8998873
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=77.84 Aligned_cols=128 Identities=16% Similarity=0.266 Sum_probs=77.5
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcccc--ccCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDV--FEGLNTLVDVGGGTGTLASAIAKKF----PHIECTVFDQ- 232 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~iLDiG~G~G~~~~~l~~~~----p~~~~~~~D~- 232 (365)
..|+.+.+++..-..|.+++.. .+.+..... ......|+|||||+|-++...+++. ...++..++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4577788887766666665432 111111100 1135789999999999987766553 4568999997
Q ss_pred hHHHHhc----cc---CCCeEEEeCCCCC-CCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 233 PHVVADL----KS---NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 233 ~~~~~~a----~~---~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+.+.... +. .++|+++.+|+.+ ..| .+|+|++-..=.....+-..+.|....+.|+| ||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEEe
Confidence 4433322 22 5899999999998 566 59999885432222333445668888899999 65544
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.6e-06 Score=71.08 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---C-CceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---P-PADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~-~~D~i~~~~vl 268 (365)
...+|||+|||+|.++..++.+. ..+++++|. +..++.+++ ..+++++.+|+.+.. . .||+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998766554 358999998 777776664 357999999987632 2 49999986553
Q ss_pred ccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 017835 269 HNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~~ 303 (365)
+. . ...++++.+.+ .|+| +.++++|...
T Consensus 132 ~~-g--~~~~~l~~l~~~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 132 RK-G--LLEETINLLEDNGWLAD----EALIYVESEV 161 (199)
T ss_pred CC-C--hHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence 21 1 12344555544 3777 4455566543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=72.69 Aligned_cols=96 Identities=15% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CCC-CceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AIP-PADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~~-~~D~i~~ 264 (365)
..++||-||+|.|.++.++++..+--+++.+|+ +.+++.+++ .+|++++-.|..+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 346999999999999999999988889999999 999998885 3899999999887 344 5999998
Q ss_pred ccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 265 KCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 265 ~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
-..=. .... -..++++.++++|+| +|.++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 55432 1110 126899999999999 7777766
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.4e-06 Score=73.69 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=78.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCCh-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND- 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~- 273 (365)
..+..++|+|||.|.++. .+|.+..++.|+ ...+..+++.+.......|+.. |.+ .+|..+...++||++.
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 447899999999998854 258889999999 6677777754443566778887 554 5999999999999974
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.....+++++.+.++| ||..+|.-+..
T Consensus 120 ~RR~~~l~e~~r~lrp---gg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRP---GGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCceEEEEehh
Confidence 4568999999999999 99988875544
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=70.52 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=76.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C-------CC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I-------PP 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------~~ 258 (365)
..+.++||+||+++|.-++.++... ++.+++.+|. ++..+.|++ .++|+++.||..+ + . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 4567899999999999999999886 4779999998 777777664 6899999999877 2 1 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
||+|++-. ....-...+..+.+.|+| |.++|+|.++-.
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~----GGviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV----GGVIGYDNTLWN 194 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC----CeEEEEcCCCCC
Confidence 99998843 344456788888999999 455666655533
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.8e-05 Score=65.31 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=84.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHH-hcccCCCeE-EEeCCCCC----CC----
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVA-DLKSNGNLK-YVGGNMFE----AI---- 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~i~-~~~~d~~~----~~---- 256 (365)
..+++.++ ....+.+|||+|||+|.++..+++. +..+++++|. +.++. ..++..++. +...|+.. ++
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 34455554 1235679999999999999999987 3458999999 54555 455556654 33445542 11
Q ss_pred CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 257 PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 257 ~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
..+|+.+++.. .+|..+.+.|+| |-.++++.+-+.-.... ........|- .....-.++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~---~~~~~L~KPqFE~~~~~--~~~~giv~~~------~~~~~~~~~ 200 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP---NDLTLLFKPQFEAGREK--KNKKGVVRDK------EAIALALHK 200 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc---CeEEEEcChHhhhcHhh--cCcCCeecCH------HHHHHHHHH
Confidence 23676666543 357889999998 55666665444222110 0000000000 011124466
Q ss_pred HHHHHHhcCCccceEEEcC
Q 017835 337 WAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~ 355 (365)
+..++.+.||++..+.+-|
T Consensus 201 ~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHcCCCeEeeEEECC
Confidence 7777888899988776553
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-05 Score=64.80 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=56.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCCCceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIPPADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~~~D~i~~~~vlh 269 (365)
-.+++|+|+|||||.+++..+-..| .+++++|+ ++.++.+++ ..++.++..|+.+--..+|.++++--+-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG 119 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFG 119 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCc
Confidence 3567999999999999988877654 48999999 899988876 4589999999977666788888865443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-05 Score=70.12 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=73.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---C-CC-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---A-IP-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~-~~-~~D~i 262 (365)
++.++||=||+|.|..+..+++..+-.+++.+|+ +.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999998766679999999 888888774 4699999999876 2 33 59999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++-..--..+.. -..++++.+++.|+| ||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 884332111111 136889999999999 77766654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.8e-05 Score=81.13 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=71.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------C-CCeEEEeCCCCCC---CC-CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------N-GNLKYVGGNMFEA---IP-PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~~-~~D~i~~~ 265 (365)
..+.+|||+|||+|.++..++.. ...+++++|. +.+++.+++ . .+++++.+|+++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 34689999999999999999986 2347999999 888888775 2 4899999998772 23 59999984
Q ss_pred ccc--c-----c-CC-hhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 266 CVL--H-----N-WN-DEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 266 ~vl--h-----~-~~-~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
--- . . +. ...-..+++.+.+.|+| ||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 211 0 0 10 12235788889999999 8877664
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-05 Score=67.95 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=68.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCCC-CCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEAI-PPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~~-~~~D~i~~~~ 266 (365)
++.++||=||||-|..++++++. |. +++.+|+ +.+++.+++ .+|++++.. +.+.. ..||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56799999999999999999987 54 9999999 888887775 678888762 32322 3699999864
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
. .+ ....+.++++|+| ||.++..
T Consensus 148 ~----~~---~~fy~~~~~~L~~---~Gi~v~Q 170 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE---DGVFISV 170 (262)
T ss_pred C----CC---hHHHHHHHHhcCC---CcEEEEC
Confidence 3 22 5678999999999 7777664
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=71.05 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=84.6
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc--------------------------
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS-------------------------- 241 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------------------------- 241 (365)
+.+.+.....++.++||||||+--+- ++...+.. +++..|. +...+..++
T Consensus 46 l~~~f~~g~~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~ 123 (256)
T PF01234_consen 46 LHETFSSGGVKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREK 123 (256)
T ss_dssp HHHHHHTSSS-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSG
T ss_pred HHHHhCccCcCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcch
Confidence 33444322335679999999996552 33333333 4666676 444432221
Q ss_pred --------CCCeE-EEeCCCCCC--C------CC-ceEEEeccccccCC--hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 242 --------NGNLK-YVGGNMFEA--I------PP-ADAVLIKCVLHNWN--DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 242 --------~~~i~-~~~~d~~~~--~------~~-~D~i~~~~vlh~~~--~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
...|+ ++..|+.++ + |+ +|++++..+|.-.+ .++-.+.++++.++||| ||.|+++..
T Consensus 124 ~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~ 200 (256)
T PF01234_consen 124 WEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGV 200 (256)
T ss_dssp HHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred hhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 11233 678899882 2 33 99999999997654 34567899999999999 898888776
Q ss_pred ecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 302 KMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
.-...... ... .+..-..+++.+++.++++||.+.+...
T Consensus 201 l~~t~Y~v-----G~~--------~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 201 LGSTYYMV-----GGH--------KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp SS-SEEEE-----TTE--------EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cCceeEEE-----CCE--------ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 43221100 000 0112223899999999999999888774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.5e-05 Score=72.58 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=69.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------C-CCeEEEeCCCCCC---C---C-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------N-GNLKYVGGNMFEA---I---P-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~---~-~~D~i 262 (365)
.++.+|||+|||+|.++...+.. ...+++++|. +.+++.+++ . .+++++.+|+++. . . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 45689999999999998776643 3458999999 888887774 1 4789999999872 1 2 59999
Q ss_pred EeccccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++.---..-+. ..-..+++.+.+.|+| ||.|+...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 98633211111 1124556677889999 88888765
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.5e-05 Score=68.36 Aligned_cols=73 Identities=22% Similarity=0.507 Sum_probs=61.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~ 258 (365)
..+++.-+ .++...||+||.|||.++..|+++ +.+++.++. |.++....+ +...+++.||+++ ++|-
T Consensus 48 ~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 48 DQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 44555566 788999999999999999999998 678888888 888877664 5789999999999 7888
Q ss_pred ceEEEe
Q 017835 259 ADAVLI 264 (365)
Q Consensus 259 ~D~i~~ 264 (365)
+|+++.
T Consensus 124 fd~cVs 129 (315)
T KOG0820|consen 124 FDGCVS 129 (315)
T ss_pred cceeec
Confidence 998877
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.6e-05 Score=70.64 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=52.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C-CCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I-PPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~-~~~D~i~~~ 265 (365)
++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+- . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4589999999999999999985 578999999 888888764 35799999999762 2 249999885
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.3e-06 Score=69.97 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=86.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe-CCCCCCCCCceEEEeccccccCChhHH
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG-GNMFEAIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~-~d~~~~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
....++||+|.|.|..+..++..+.. +...++ ..|..+.++ .+..+.. -+..+..-.+|+|.|.++|.-..++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 44589999999999999998887654 333344 455555553 2222211 1111122259999999999766666
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC--HHHHHHHHHhcCCccceEEEc
Q 017835 277 VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN--EKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 277 ~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t--~~e~~~ll~~aGf~~~~~~~~ 354 (365)
-++|+.|+.+|+|+ .|++++.=...-....+. ..........-....+|+.+. ...+-++|+++||.+..+..+
T Consensus 186 ~kLL~Di~~vl~ps--ngrvivaLVLP~~hYVE~--N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPS--NGRVIVALVLPYMHYVET--NTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhccC--CCcEEEEEEecccceeec--CCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 78999999999994 577766432221111110 000000000001123455332 233668899999999988887
Q ss_pred C
Q 017835 355 L 355 (365)
Q Consensus 355 ~ 355 (365)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 5
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.2e-05 Score=70.37 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=69.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
-..+.|||||||+|-++..-+++. ..++.++|...+++.+.+ .+.|+++.+.+.+ .+| ..|+|++-+.=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 456899999999999999888886 568999998888877764 5678999998887 444 59999886554
Q ss_pred ccCC-hhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 269 HNWN-DEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 269 h~~~-~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+.+- +.....+|-.=-+.|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 4322 22233444444468998 77665
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.6e-05 Score=65.16 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=68.0
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC-CCceEEEeccccccCCh
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI-PPADAVLIKCVLHNWND 273 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-~~~D~i~~~~vlh~~~~ 273 (365)
+++|||+|.|.-++-|+=.+|+.+++.+|. ..-+...+. .++++++++.+.+ .. ..||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 433333322 5789999998887 33 3599999988752
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
...+++-+...+++ ||+++...
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 25677888888999 89888865
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=62.75 Aligned_cols=125 Identities=19% Similarity=0.275 Sum_probs=87.2
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--C-ceEEEeccccccCC
Q 017835 204 LVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--P-ADAVLIKCVLHNWN 272 (365)
Q Consensus 204 iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~-~D~i~~~~vlh~~~ 272 (365)
|.||||-.|.+...|++...--+++..|+ +..++.|++ .++|++..+|-++.++ + .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999987778999999 877887774 6899999999888654 3 889888764 4
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEE
Q 017835 273 DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 352 (365)
-.-..++|.+....++. ..++++ .+. .....++++|.+.||.+++=.
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP~-----------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QPN-----------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EES-----------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eCC-----------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 55567888877776664 234333 221 145678999999999987554
Q ss_pred Ec--CC-ceeEEEEeC
Q 017835 353 DV--LG-VRSLIEVYP 365 (365)
Q Consensus 353 ~~--~~-~~~vi~~~~ 365 (365)
.+ .+ +|.||.+.|
T Consensus 124 lv~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 124 LVEENGRFYEIIVAER 139 (205)
T ss_dssp EEEETTEEEEEEEEEE
T ss_pred EEeECCEEEEEEEEEe
Confidence 44 33 477877653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.5e-06 Score=77.15 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=68.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEe---ec-hHHHHhcccCCCeEEEeCCCCC---CCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVF---DQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh 269 (365)
...+.+||||||+|.++..|.++ ++....+ |. +..++.|.+ -.|..+-+-+.+ |+| .||+|.|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 45689999999999999999988 4433222 22 233444432 223333333322 666 399999999999
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.|...+ ..+|-++-|+|+| ||.++...+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhcc---CceEEecCCccc
Confidence 998765 4688999999999 888877665443
|
; GO: 0008168 methyltransferase activity |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.4e-05 Score=65.81 Aligned_cols=92 Identities=15% Similarity=0.309 Sum_probs=65.8
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC--
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP-- 258 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~-- 258 (365)
...+++... ..+...|+|||+|.|.++..|+++.. +++++++ +..++..++ .++++++.+|+.+ +++.
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 355666665 56689999999999999999999954 5666666 666665554 5899999999999 7774
Q ss_pred ceEEEeccccccCChhHHHHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKN 282 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~ 282 (365)
.-..+.++.-++++.+-..++|..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhc
Confidence 223444566667776655555543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.8e-05 Score=63.05 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C--C-C-ceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I--P-P-ADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~--~-~-~D~i~~ 264 (365)
.+.++||++||+|.++.+++.+.. .+++.+|. +..++.+++ .++++++.+|+++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 457999999999999999999864 37999998 677766653 35789999999652 1 1 2 677776
Q ss_pred ccccccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~~ 303 (365)
---... ....+++..+.+ .|++ +.++|+|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 433321 112344444433 5666 5677777644
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=8e-05 Score=73.34 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=70.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc-c-----CCCeEEEeCCCCC---CCC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK-S-----NGNLKYVGGNMFE---AIP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~-----~~~i~~~~~d~~~---~~~--~~D~i~~~~ 266 (365)
.....+||||||.|.++..++..+|+..++|+|. ...+..+. + ..++.++++|+.. .++ +.|-|++.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3568999999999999999999999999999998 44333322 1 4678888887642 344 377776643
Q ss_pred ccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWND-------EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.= -|+. --...+|+.+++.|+| ||.|.+..
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 22 1221 1135789999999999 89888754
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.7e-05 Score=68.62 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=62.1
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC--C-C-
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE--A-I- 256 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~--~-~- 256 (365)
..++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. +.+++.+++ .+|++++.+|+.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 355666665 56778999999999999999999986 789999999 899988875 2589999999886 1 1
Q ss_pred ---CCceEEEec
Q 017835 257 ---PPADAVLIK 265 (365)
Q Consensus 257 ---~~~D~i~~~ 265 (365)
+.+|.|++-
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 158888774
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00015 Score=66.67 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=74.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-hHHHHhccc------CCCeEE--EeCCCCCC---C-----C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF----PHIECTVFDQ-PHVVADLKS------NGNLKY--VGGNMFEA---I-----P 257 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~i~~--~~~d~~~~---~-----~ 257 (365)
.+...|+|+|||+|.=+..|++.+ ...+++.+|+ ...++.+.. .+.+++ +++|+.+. . +
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 345689999999998877777665 3467999999 566665543 245655 78888662 2 1
Q ss_pred -CceEEE-eccccccCChhHHHHHHHHHHH-hcccCCCCcEEEE-Eeee
Q 017835 258 -PADAVL-IKCVLHNWNDEECVKILKNCKK-AIAINGKAGKVII-IDIK 302 (365)
Q Consensus 258 -~~D~i~-~~~vlh~~~~~~~~~~L~~i~~-~L~p~~~gG~lli-~e~~ 302 (365)
...+++ +..++.+++++++..+|+++++ .|+| |+.++| +|..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG~D~~ 200 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIGLDGC 200 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEecCCC
Confidence 245554 4579999999999999999999 9999 777776 4433
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.9e-05 Score=74.37 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=64.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-----C-C-CceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-----I-P-PADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-----~-~-~~D~i~ 263 (365)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+. . . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 48999999 888888775 35899999998651 1 1 489998
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+.-.=- . ....+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr~--G--~~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDPPRK--G--CAAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECcCCC--C--CCHHHHHHHHh-cCC---CEEEEE
Confidence 732210 1 01455665554 777 565555
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00097 Score=55.10 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=51.5
Q ss_pred CCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCC--CCceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAI--PPADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--~~~D~i~~~~ 266 (365)
...-++|||||+|..+..|++. .|+..+...|+ |..++.-.+ .-++..+..|+.+.+ .+.|+++++-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 3688999999999999888876 57888999999 777665433 445677888998843 4588888763
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=69.81 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=61.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C-CCceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I-PPADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~-~~~D~i~~~~vl 268 (365)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.+++ .++++++.+|+.+. . ..||+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4579999999999999999865 468999998 888887764 34799999998652 2 359998885321
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
-.+ ..++++.+. .++| ++.+++
T Consensus 311 ~G~----~~~~l~~l~-~~~p---~~ivyv 332 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAP---KFILYS 332 (374)
T ss_pred CCC----cHHHHHHHH-hcCC---CeEEEE
Confidence 111 134445554 3677 454444
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.3e-05 Score=63.15 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=89.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC--CC--eEEEeCCCCC-CCC--CceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN--GN--LKYVGGNMFE-AIP--PADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~--i~~~~~d~~~-~~~--~~D~i~~~~vlh~ 270 (365)
+....++|||||.|.....|.... --+.+..|. ..|++.++.. +. ++...+|-.. ++. ++|+|+.+..+|-
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 556799999999999999998875 226788888 7788877652 33 3445666544 554 4999999999984
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcc------ccCHHHHHHHHHhc
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGE------ERNEKEWAKLFFEA 344 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~t~~e~~~ll~~a 344 (365)
.++- ..-+.+|+.+||| +|.++ ....-.+.- .+.+....+..+-..+|- .-...++-.+|..|
T Consensus 150 ~NdL--Pg~m~~ck~~lKP---Dg~Fi-asmlggdTL-----yELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 150 TNDL--PGSMIQCKLALKP---DGLFI-ASMLGGDTL-----YELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hccC--chHHHHHHHhcCC---Cccch-hHHhccccH-----HHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 3432 5568899999999 56443 332222211 112222222222111221 11457888999999
Q ss_pred CCccceE
Q 017835 345 GFSDYKI 351 (365)
Q Consensus 345 Gf~~~~~ 351 (365)
||....+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9986654
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=64.39 Aligned_cols=66 Identities=18% Similarity=0.354 Sum_probs=52.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC----CCC----CceEEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE----AIP----PADAVL 263 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~----~~~----~~D~i~ 263 (365)
....|||+|||+|..+..++...|.++++.+|. +.++..+.+ .+++.++..++.. +.+ .+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999999999999999999 666666553 6888888555544 332 489988
Q ss_pred ec
Q 017835 264 IK 265 (365)
Q Consensus 264 ~~ 265 (365)
++
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 85
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=62.40 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=83.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHH---hccc---CCCeEEEeCCCCC--CCCC-ceEEEecccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVA---DLKS---NGNLKYVGGNMFE--AIPP-ADAVLIKCVLHN 270 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~---~a~~---~~~i~~~~~d~~~--~~~~-~D~i~~~~vlh~ 270 (365)
..+++|||.|.|.-+.-|+=.+|+.+++.+|. ..-+. .+.. .++++++++-+.+ ..+. ||+|++..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998999999999996 33333 3332 6789999998877 2335 99999987652
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
...++.-+...+++ ||+++..-.....+ ...+.+.....-|+.+.+
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~~~k~~~~~~--------------------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFLAYKGLAGKD--------------------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcchhhhHHhhhh--------------------------hHHHHHHHHHhhcCcEEE
Confidence 23445556667777 77665432211000 234556666777888888
Q ss_pred EEEcC
Q 017835 351 ITDVL 355 (365)
Q Consensus 351 ~~~~~ 355 (365)
+....
T Consensus 193 ~~~~~ 197 (215)
T COG0357 193 VFSLT 197 (215)
T ss_pred EEEee
Confidence 87763
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00055 Score=58.78 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=92.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc--------CCCeEEEeCCCCC---CCC--CceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE---AIP--PADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~---~~~--~~D~i 262 (365)
.+.+.+|||.=.|-|.++++.+++ ++ +++-++- |.+++.|+- ..+|+++.||..+ .++ +||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 456899999999999999998888 44 7888887 888887763 4478999999987 344 48988
Q ss_pred Eec-cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 263 LIK-CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 263 ~~~-~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
+-- -=+.+-..--..++-++++|+|+| ||+++-.--..... +.... -.....+.|
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~Pg~r-----------yrG~d----------~~~gVa~RL 265 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNPGKR-----------YRGLD----------LPKGVAERL 265 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCCCcc-----------cccCC----------hhHHHHHHH
Confidence 541 011111222346789999999999 99998765432211 11111 235677889
Q ss_pred HhcCCccceEEEcC
Q 017835 342 FEAGFSDYKITDVL 355 (365)
Q Consensus 342 ~~aGf~~~~~~~~~ 355 (365)
+++||.+++.....
T Consensus 266 r~vGF~~v~~~~~~ 279 (287)
T COG2521 266 RRVGFEVVKKVREA 279 (287)
T ss_pred HhcCceeeeeehhc
Confidence 99999977765543
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0017 Score=58.06 Aligned_cols=135 Identities=18% Similarity=0.138 Sum_probs=91.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechH-HH-------Hh---cc---------------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPH-VV-------AD---LK--------------------------- 240 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~-------~~---a~--------------------------- 240 (365)
+...+||-=|||-|.++..++.. +..+.+-|... |+ .. ..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 44689999999999999999998 55666666522 21 11 00
Q ss_pred ---------cCCCeEEEeCCCCC--CCC----CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 241 ---------SNGNLKYVGGNMFE--AIP----PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 241 ---------~~~~i~~~~~d~~~--~~~----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
...+++...|||.+ ..+ .+|+|+.++.+. .-+...+.|+.|.++||| ||..+=+-+..-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh 207 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPLLYH 207 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCcccc
Confidence 03478889999998 223 499998886664 344578999999999999 7855544444332
Q ss_pred CccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 306 EKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 306 ~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
.... . ......-+.+.+|++++.+..||++++-..
T Consensus 208 ~~~~------------~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 FEPM------------S-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCC------------C-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 2110 0 000112355899999999999999886655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00046 Score=58.81 Aligned_cols=107 Identities=20% Similarity=0.200 Sum_probs=75.8
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCCCC---------
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAI--------- 256 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~--------- 256 (365)
..++.+++. .++++.+|+|+|+..|+++..+++.. ++.+++++|+.++-.. .+|.++.+|+..+-
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHc
Confidence 355677774 67899999999999999999888875 4456999998665543 45999999999831
Q ss_pred C--CceEEEec---cccccCC------hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 P--PADAVLIK---CVLHNWN------DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 ~--~~D~i~~~---~vlh~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+ .+|+|++- ++--+++ -.-+...+.-+...|+| ||.+++-.+
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f 160 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF 160 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence 2 26999853 2222222 23345556666779999 787777554
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00018 Score=60.27 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCCCCCC-ceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFEAIPP-ADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~~~~-~D~i~~ 264 (365)
..-.+.|||||.|.++..|+..||+.-+.|.++ -.+.+..++ ..++.+...+.+.-.|+ |.---+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346899999999999999999999999999987 555444331 34667777666664443 222222
Q ss_pred ccccccCChhH-----------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEE-----------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~-----------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+-.++.++|+. ...++.+..=+|++ ||.++.+..+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 22223333332 24567788889998 89888876443
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=58.01 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=75.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCC--C-CceEEEeccccccCChh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAI--P-PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~--~-~~D~i~~~~vlh~~~~~ 274 (365)
+.++.++|||||++|.++..|+++ +.+++++|..++........+|++..+|.+... + ++|.++|--+.. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H
Confidence 467899999999999999999998 669999998777666666899999999988833 2 489998866542 2
Q ss_pred HHHHHHHHHHHhcccCCCC-cEEEEEeeecCCCc
Q 017835 275 ECVKILKNCKKAIAINGKA-GKVIIIDIKMESEK 307 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~g-G~lli~e~~~~~~~ 307 (365)
.++.+-+.+.|.. | .+-.|+...++...
T Consensus 283 --~rva~lm~~Wl~~---g~cr~aIfnLKlpmk~ 311 (357)
T PRK11760 283 --ARVAELMAQWLVN---GWCREAIFNLKLPMKK 311 (357)
T ss_pred --HHHHHHHHHHHhc---CcccEEEEEEEcCCCC
Confidence 3566777778875 3 35666666665543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0013 Score=57.94 Aligned_cols=105 Identities=15% Similarity=0.240 Sum_probs=75.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-IP 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~~ 257 (365)
..++..++ ..++.+||+-|.|+|.++.++++. .|.-++.-+|. ..-.+.+.+ .+++++...|+... +.
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 34556666 899999999999999999999998 58889999998 333334432 78999999999873 32
Q ss_pred ----CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 258 ----PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 258 ----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.+|.|++ +++.+ ...+-.++++|+. .||++.-+.++.
T Consensus 173 ~ks~~aDaVFL-----DlPaP--w~AiPha~~~lk~--~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAP--WEAIPHAAKILKD--EGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCCh--hhhhhhhHHHhhh--cCceEEeccHHH
Confidence 3898877 44544 4456667778886 155666555443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00058 Score=64.76 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--C-CCCceEEEecccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--A-IPPADAVLIKCVLHN 270 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~~~~D~i~~~~vlh~ 270 (365)
..+|||++||+|.+++.++...+..+++++|. +..++.+++ ..++++..+|... . ...||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998876568999999 888887764 3456688888765 2 23599998843 1
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
..+ ..++..+.+.+++ ||.|+|.
T Consensus 135 -Gs~--~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcC---CCEEEEE
Confidence 222 4577776777888 8888887
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00015 Score=65.78 Aligned_cols=102 Identities=18% Similarity=0.357 Sum_probs=67.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEeechHHHHhccc-------CCCeEEEeCCCCC---CCCCceEEEeccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIE-CTVFDQPHVVADLKS-------NGNLKYVGGNMFE---AIPPADAVLIKCVLH 269 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~---~~~~~D~i~~~~vlh 269 (365)
.++|||||.|.|.-+.++-.-+|+++ ++.++....+..... .........|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46799999999999988888899985 566666333332221 1222223344443 466666666655555
Q ss_pred cC----ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 270 NW----NDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 270 ~~----~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.+ ........++++.+.+.| ||.|+|+|.-.+.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCch
Confidence 43 233445589999999999 9999999975544
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=54.51 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=85.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHh-----------ccc--CCCeEEEeCCCCC-CCC-CceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVAD-----------LKS--NGNLKYVGGNMFE-AIP-PADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~-----------a~~--~~~i~~~~~d~~~-~~~-~~D~ 261 (365)
++++.+|+|+=.|.|.++.-+...- |.-.+..+-..+.... +++ ..+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 7899999999999999998887753 4334443322222111 111 3455555544444 223 4777
Q ss_pred EEeccccccC-----ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 262 VLIKCVLHNW-----NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 262 i~~~~vlh~~-----~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
++....-|++ ...-+.++.+.++++||| ||.++|.|+......... ... . .+ .++...
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~--~--------~~-ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTI--T--------LH-RIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhh--h--------hc-ccChHH
Confidence 7664333322 344567899999999999 999999998876544321 100 0 01 125667
Q ss_pred HHHHHHhcCCccceEEEc
Q 017835 337 WAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~ 354 (365)
..+..+.+||+...-..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 777889999987644433
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00066 Score=61.21 Aligned_cols=92 Identities=16% Similarity=0.335 Sum_probs=65.6
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC--
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP-- 258 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~-- 258 (365)
...+++.++ ..+...|||||+|.|.++..|++.. .+++++|. +..++..++ .++++++.+|+.+ +.+.
T Consensus 19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 355666666 6688999999999999999999996 68888888 777776665 5899999999998 3332
Q ss_pred --ceEEEeccccccCChhHHHHHHHHHHHh
Q 017835 259 --ADAVLIKCVLHNWNDEECVKILKNCKKA 286 (365)
Q Consensus 259 --~D~i~~~~vlh~~~~~~~~~~L~~i~~~ 286 (365)
-.+.++.+.-++.+. .++.++...
T Consensus 95 ~~~~~~vv~NlPy~is~----~il~~ll~~ 120 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISS----PILRKLLEL 120 (262)
T ss_dssp SSSEEEEEEEETGTGHH----HHHHHHHHH
T ss_pred cCCceEEEEEecccchH----HHHHHHhhc
Confidence 344455555444443 455555553
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00023 Score=60.36 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHHhhcccc-ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCCC---------C
Q 017835 188 SALIHKCKDV-FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA---------I 256 (365)
Q Consensus 188 ~~~~~~~~~~-~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~ 256 (365)
.++.+.++.. ..+..++||+||++|.++..++++. +..+++++|+..+ .....+..+.+|+.++ .
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhhhhc
Confidence 3455555511 1246999999999999999999987 6789999998444 1124555555555441 1
Q ss_pred ----CCceEEEecccc---ccC------ChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 257 ----PPADAVLIKCVL---HNW------NDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 257 ----~~~D~i~~~~vl---h~~------~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..+|+|++--.. .+. ....+...|.-+.+.|+| ||.+++--
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 258999885422 111 122334445555567899 78776643
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00075 Score=54.73 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=58.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCCC--CCCceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFEA--IPPADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~--~~~~D~ 261 (365)
..+..+|+|+|||.|.++..|+.. .++.+++++|. +...+.+.. ..++++..+++.+. ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 367889999999999999999982 27899999998 666665543 25666666666542 234777
Q ss_pred EEeccccccCChhHHHHHHHHHHH
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKK 285 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~ 285 (365)
++.-|..-.+++. +|+...+
T Consensus 103 ~vgLHaCG~Ls~~----~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSDR----ALRLFIR 122 (141)
T ss_pred EEEeecccchHHH----HHHHHHH
Confidence 7777776655553 4444444
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=53.81 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=67.2
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeC-CCCCC---------CCC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGG-NMFEA---------IPP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~-d~~~~---------~~~ 258 (365)
+-+++. .+++..+|||+||..|.++.-..++. |+-.+.++|+.+... ...+.++.+ |+.+| .|+
T Consensus 60 indKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 60 INDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 344554 46889999999999999999888775 999999999854433 355566666 66653 243
Q ss_pred --ceEEEecccccc----------CChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 --ADAVLIKCVLHN----------WNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 --~D~i~~~~vlh~----------~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.|+|++-. .++ -.-+-|..+|.-....+.| +|.+++--+
T Consensus 135 r~VdvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~w 185 (232)
T KOG4589|consen 135 RPVDVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKLW 185 (232)
T ss_pred CcccEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEEe
Confidence 78876632 222 1223444555444556677 777776444
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.002 Score=57.88 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=57.0
Q ss_pred CCCeEEEecCCccHHHHH-HHHH-CCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCC---CCCCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLASA-IAKK-FPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE---AIPPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~---~~~~~D~i~~~ 265 (365)
...+|+=||||.=-++.- |++. .++..++++|. +...+.+++ ..+++|+.+|..+ +..+||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999998766544 4443 46788999999 777777653 6899999999876 24579999987
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.... .+.++-.++|.++.+.++| |..|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 7664 2333448999999999999 6766664
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00042 Score=65.20 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=43.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
.+|||++||+|.++..|++.. .+++++|. +.+++.+++ ..+++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 479999999999999999886 38999999 888888775 3478999999865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00045 Score=64.62 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=82.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..+...++|+|||.|.....+... ..+.++++|. +..+.+... .....++.+|+.+ +++ .+|.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 455668999999999998877764 5678899987 555555442 4555568889988 566 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
+..|.++. ..++++++++++| ||..++.|++.....
T Consensus 187 ~~~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 187 VVCHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTAKL 222 (364)
T ss_pred ecccCCcH--HHHHHHHhcccCC---CceEEeHHHHHhhhc
Confidence 99999987 7889999999999 899998888775443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.015 Score=49.85 Aligned_cols=129 Identities=13% Similarity=0.153 Sum_probs=92.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP---PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~---~~D~i~~~~v 267 (365)
+.+.++.||||-.|.+.+.|.+.++..+++..|. +..++.|.+ .+++++..+|-+.++. ..|++++..+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 4455699999999999999999999999999998 666665543 7899999999988643 4899988653
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
.-.-..++|.+-.+-|+. =-++++ -+ --...++++||.+.+|.
T Consensus 95 ----GG~lI~~ILee~~~~l~~---~~rlIL-QP-----------------------------n~~~~~LR~~L~~~~~~ 137 (226)
T COG2384 95 ----GGTLIREILEEGKEKLKG---VERLIL-QP-----------------------------NIHTYELREWLSANSYE 137 (226)
T ss_pred ----cHHHHHHHHHHhhhhhcC---cceEEE-CC-----------------------------CCCHHHHHHHHHhCCce
Confidence 455567888887777763 123333 11 11456788889999998
Q ss_pred cceEEEcC--C-ceeEEEEe
Q 017835 348 DYKITDVL--G-VRSLIEVY 364 (365)
Q Consensus 348 ~~~~~~~~--~-~~~vi~~~ 364 (365)
+..=.-+. + .|-+|.+.
T Consensus 138 I~~E~ileE~~kiYEIlv~e 157 (226)
T COG2384 138 IKAETILEEDGKIYEILVVE 157 (226)
T ss_pred eeeeeeecccCeEEEEEEEe
Confidence 76444442 3 36666654
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00016 Score=47.68 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=39.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+.|++.|...++++|+.|||+++|+ +...+.|+|..|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 3567778876577899999999999 578999999999999999975
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00093 Score=57.31 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=64.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC--CCceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI--PPADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~--~~~D~i~~~~v 267 (365)
..++.+|+|.-||.|.+++.+++..+..+++..|+ |..++.+++ ..+|....+|..+-. ..+|-|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45678999999999999999999777889999999 888877664 678999999987732 34898888542
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEE
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKV 296 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~l 296 (365)
- .+.++|..+.+.+++ ||.+
T Consensus 179 ~------~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEE
T ss_pred H------HHHHHHHHHHHHhcC---CcEE
Confidence 2 234678888899998 5543
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0026 Score=58.22 Aligned_cols=93 Identities=19% Similarity=0.397 Sum_probs=72.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCCCC----CCc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFEAI----PPA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~~----~~~ 259 (365)
++..++|-+|||-|..+.++.+ +|+ -+++.+|+ |.|++.++. ..|++++..|.++-. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999886 574 47899999 999998872 679999999999832 249
Q ss_pred eEEEeccccccCChhH--------HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 260 DAVLIKCVLHNWNDEE--------CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~--------~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
|+++.- ++|+. ..++-+-+++.|++ +|.+++..
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa 407 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA 407 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec
Confidence 998873 33332 24667778889998 78777754
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00084 Score=55.67 Aligned_cols=97 Identities=18% Similarity=0.290 Sum_probs=73.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCCCceEEEeccccccCCh
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIPPADAVLIKCVLHNWND 273 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~ 273 (365)
..+.|+|.|+|-++.-.+++ .-+++.++. |.....+++ ..+++++.+|..+ .+..+|+|+|-..=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 68999999999998766665 448899988 777666664 5789999999998 7878999988533222234
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+..+.+++.+-.-|+- +++++-.+...
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v~~ 138 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEVRI 138 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHHhh
Confidence 4447888888888887 68877655433
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0068 Score=54.44 Aligned_cols=146 Identities=16% Similarity=0.082 Sum_probs=95.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCCC----------C-C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEAI----------P-P 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~-~ 258 (365)
.+...||.+|||-=.....+... +++++.-+|.|++++.-++ ..+.+++..|+...+ + .
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999998887776432 3688888999988875442 468899999997421 1 1
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchh-hhhhhhhhh--hhccCccccCHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE-TQLFMDMLM--MVLVKGEERNEK 335 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~d~~~--~~~~~~~~~t~~ 335 (365)
.-++++-.++.+++.+++.++|+.+.+...| |..+++|.+.+-.... ... ......... ....-.-..+.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEW--RAGMRAPVYHAARGVDGSGLVFGIDRA 232 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhH--HHHHHHHHHHhhhcccccccccCCChh
Confidence 4577888999999999999999999998887 4555667655411110 000 000000000 000000113789
Q ss_pred HHHHHHHhcCCccceE
Q 017835 336 EWAKLFFEAGFSDYKI 351 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~ 351 (365)
++.++|++.||+....
T Consensus 233 ~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 233 DVAEWLAERGWRASEH 248 (260)
T ss_pred hHHHHHHHCCCeeecC
Confidence 9999999999998665
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0057 Score=54.98 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=90.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec------hHHHHhcc---------------------------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ------PHVVADLK--------------------------------- 240 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~--------------------------------- 240 (365)
...+||-=|||.|.++..|+..++.+++--+.. .-++...+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 367999999999999999999988776632211 00110000
Q ss_pred ------cCCCeEEEeCCCCC--CCC----CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCcc
Q 017835 241 ------SNGNLKYVGGNMFE--AIP----PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA 308 (365)
Q Consensus 241 ------~~~~i~~~~~d~~~--~~~----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~ 308 (365)
..+..+.-.|||.+ ..+ .||+|+.++.+. .-....+.|..|.+.|+| ||..+=+-+..-+-..
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFED 304 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccC
Confidence 02234446688887 222 399998886664 344568999999999999 8877766665544332
Q ss_pred CccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 309 ~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.+-. . .-.+-+.+.+++.++.+.-||++++-..+
T Consensus 305 ~~g~-------~-----~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 305 THGV-------E-----NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred CCCC-------c-----ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 2100 0 01134558999999999999998765533
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0057 Score=49.63 Aligned_cols=95 Identities=20% Similarity=0.324 Sum_probs=64.3
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-C--CC---eEEEeCCCCC---CCC---CceEEEeccccc
Q 017835 204 LVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-N--GN---LKYVGGNMFE---AIP---PADAVLIKCVLH 269 (365)
Q Consensus 204 iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~~---i~~~~~d~~~---~~~---~~D~i~~~~vlh 269 (365)
++|+|||+|... .+....+. ..++++|. +.++..... . .. +.+..+|... ++. .+|++ +....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 34443333 47888898 666665332 1 11 5777777664 333 48999 544444
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
++.. ....++++.+.++| +|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 4433 47889999999999 8888888776544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00054 Score=56.50 Aligned_cols=62 Identities=24% Similarity=0.430 Sum_probs=46.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---CC--C-ceEEEec
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---IP--P-ADAVLIK 265 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~~--~-~D~i~~~ 265 (365)
..|+|+-||.|..++.+++.+. +++++|+ +..++.++. .++|+++.+|+++- .. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3799999999999999999964 6889998 777777764 67999999999882 22 2 7999875
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0017 Score=56.86 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=67.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh 269 (365)
.....+|+|||||---++.-+....|+..++++|+ ...++.... ..+.++...|..+..| .+|+.++.-++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 35589999999999999998888888999999999 777776654 5677788889998644 499999999998
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.+...+. ..--++-+.++. -.++|.-+..
T Consensus 183 ~le~q~~-g~g~~ll~~~~~----~~~vVSfPtr 211 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS----PHVVVSFPTR 211 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE----SEEEEEEES-
T ss_pred HHHHHhc-chHHHHHHHhCC----CeEEEecccc
Confidence 7765543 222334444543 3555544443
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0044 Score=53.80 Aligned_cols=101 Identities=20% Similarity=0.363 Sum_probs=73.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC----CeEEEeec-hHHHHhcc-----cCC--CeEEEeCCCCCC---CCC--ce-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH----IECTVFDQ-PHVVADLK-----SNG--NLKYVGGNMFEA---IPP--AD- 260 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~-----~~~--~i~~~~~d~~~~---~~~--~D- 260 (365)
.+...++|+|.|+..=+..|...+.. .+++-+|+ ..++.... +.. .+.-+++|+..+ .|. --
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888887755 78999998 44443321 233 344567787663 332 22
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE-Eeee
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII-IDIK 302 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli-~e~~ 302 (365)
.++....|.++++.+|..+|.+++.+|+| |-.+++ +|..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEecccc
Confidence 34567899999999999999999999999 777766 4443
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00059 Score=64.44 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=43.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
.+|||++||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 579999999999999999875 38999999 888887764 3478999999865
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00049 Score=55.63 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=66.0
Q ss_pred CCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCCC-----CCCceEEE
Q 017835 200 GLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFEA-----IPPADAVL 263 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~-----~~~~D~i~ 263 (365)
.+.+||++|+|--.+ ++.++..-|...+-..|- ...++..++ ..++.++.-+.... +..||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 357999999996555 444555668888888886 444544442 23444444444432 12499999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
+...+. =++....+.+.|+..|+| .|+-+++.+.
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p---~g~Al~fsPR 142 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRP---SGRALLFSPR 142 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCc---ccceeEecCc
Confidence 998874 455567899999999999 6776665543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.041 Score=46.51 Aligned_cols=140 Identities=13% Similarity=0.122 Sum_probs=94.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH----HHhcccCCCeEEEeCCCCCCCC------CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHV----VADLKSNGNLKYVGGNMFEAIP------PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~i~~~~~d~~~~~~------~~D~i~~~~ 266 (365)
++++.+||=+|..+|.....+....++-.+.+++. +.+ +..+++..|+--+-+|...|.. ..|+|+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 78999999999999999999999888767777776 443 4445557888888889888642 4788865
Q ss_pred ccccCC-hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 267 VLHNWN-DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 267 vlh~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
+.. +.++.-+..++..-|++ ||.+++.=-..+-+....+ ...+ .++ ..-|++.|
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp----~~vf--------------~~e-v~kL~~~~ 206 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTADP----EEVF--------------KDE-VEKLEEGG 206 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCCH----HHHH--------------HHH-HHHHHhcC
Confidence 333 33455566688889998 7766664433332222110 0111 223 34568889
Q ss_pred CccceEEEcCCc---eeEEEEe
Q 017835 346 FSDYKITDVLGV---RSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~~ 364 (365)
|++.++..+..+ +.+|.++
T Consensus 207 f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred ceeeEEeccCCcccceEEEEEe
Confidence 999999888433 6666654
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.009 Score=58.15 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=72.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CCC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AIP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~~-~~D~i~~~ 265 (365)
..++.+|||+++|.|.=+..++....+ ..++..|+ +.-+..+++ ..++.+...|... ..+ .||.|++-
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467889999999999999999998643 57888998 555554442 4667888888664 234 49999852
Q ss_pred c------cc-------ccCChhHH-------HHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 C------VL-------HNWNDEEC-------VKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ~------vl-------h~~~~~~~-------~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
- ++ ..|+.+.. .++|+++.+.||| ||+|+-.....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCC
Confidence 2 22 22333222 6899999999999 88886655443
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.003 Score=51.11 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=43.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
+|+|||||.|.++..+++.+|..+++++|. |.+.+.+++ ..+++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 888877664 2457777776654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0011 Score=52.72 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=51.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--C-ceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--P-ADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~-~D~i~~~~vl 268 (365)
-.+++++|+|||.|.+.++... +..-.++|+|+ |+.++.+.+ .-++.+.+.|+.+..+ . ||..++.--+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3578999999999999844332 23346899999 999998875 3466788888888533 2 8998887655
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0048 Score=51.76 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=68.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCCCceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIPPADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~ 271 (365)
.-.+++|||+|.|+|..++.-++.. ...++..|. |.....++- .-.|.+...|..-+.+.+|+++...++++-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 3457899999999999998877763 234555566 443333331 345677777877755579999999999754
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
..+.+++. ....++. +|..++|.++-.+.
T Consensus 156 --~~a~~l~~-~~~~l~~--~g~~vlvgdp~R~~ 184 (218)
T COG3897 156 --TEADRLIP-WKDRLAE--AGAAVLVGDPGRAY 184 (218)
T ss_pred --hHHHHHHH-HHHHHHh--CCCEEEEeCCCCCC
Confidence 44466777 5555554 16778877765544
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0096 Score=50.35 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=62.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC-C-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIE---------CTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI-P- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-~- 257 (365)
.+++..|+|-=||+|.++++.+...++.. +++.|. +.+++.++. ...+.+...|+.+ +. +
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 46778999999999999999888777766 899999 888887764 4578999999988 53 3
Q ss_pred CceEEEecccccc-CCh-hH----HHHHHHHHHHhccc
Q 017835 258 PADAVLIKCVLHN-WND-EE----CVKILKNCKKAIAI 289 (365)
Q Consensus 258 ~~D~i~~~~vlh~-~~~-~~----~~~~L~~i~~~L~p 289 (365)
.+|+|++.--... ... .+ -.++++++++++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 4899998644332 122 11 23556777788886
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.046 Score=47.19 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=84.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HHHhcccCCCeEEEeCCCCCCC------CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PH----VVADLKSNGNLKYVGGNMFEAI------PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~~~~------~~~D~i~~~ 265 (365)
++++.+||-+|.++|.....+...- |+-.+.+++. +. .+..+++..||--+-.|...|. +..|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 7889999999999999999999874 4778888887 53 4455666889988889998853 248888763
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
- -+ + +++.-++.++...||+ ||.+++.=-...-+.... . .. ...+=.+-|++.|
T Consensus 151 V-aQ--p-~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~---p-~~---------------vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 V-AQ--P-DQARIAALNARHFLKP---GGHLIISIKARSIDSTAD---P-EE---------------VFAEEVKKLKEEG 204 (229)
T ss_dssp --SS--T-THHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSS---H-HH---------------HHHHHHHHHHCTT
T ss_pred C-CC--h-HHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCC---H-HH---------------HHHHHHHHHHHcC
Confidence 2 21 3 3556677788899999 888887532211111100 0 00 1122234568889
Q ss_pred CccceEEEcCC
Q 017835 346 FSDYKITDVLG 356 (365)
Q Consensus 346 f~~~~~~~~~~ 356 (365)
|++.+...+..
T Consensus 205 ~~~~e~i~LeP 215 (229)
T PF01269_consen 205 FKPLEQITLEP 215 (229)
T ss_dssp CEEEEEEE-TT
T ss_pred CChheEeccCC
Confidence 99998888843
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=54.61 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCC--CCC--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-------FPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE--AIP-- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~--~~~-- 257 (365)
..+..+|+|-.||+|.++.++.+. .+..++.|+|. +.++..++. .....+..+|.+. ...
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456779999999999999988874 47789999999 666655442 3345688888887 222
Q ss_pred -CceEEEecccc--ccCCh-----------------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 -PADAVLIKCVL--HNWND-----------------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 -~~D~i~~~~vl--h~~~~-----------------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++.--+ ..|.+ ..-..++..+.+.|++ ||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence 59999986222 21111 1113578889999999 898776543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.004 Score=56.30 Aligned_cols=99 Identities=20% Similarity=0.334 Sum_probs=73.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHHHhccc---------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKF--------------------PHIECTVFDQ---PHVVADLKS--------------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~--------------- 241 (365)
+..+||-||||.|.=..+|+..+ +.++++.+|+ ..++.....
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999998877777665 2257899997 556655431
Q ss_pred --------CCCeEEEeCCCCCC-C---------CCceEEEeccccccC---ChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 242 --------NGNLKYVGGNMFEA-I---------PPADAVLIKCVLHNW---NDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 242 --------~~~i~~~~~d~~~~-~---------~~~D~i~~~~vlh~~---~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.-+++|.+.|+++. . +..++|.+.++++.+ +..+..++|.++-..++| |..|+|+|
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvD 242 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVD 242 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEc
Confidence 22578899999982 1 236888887777543 456778999999999999 88888888
Q ss_pred e
Q 017835 301 I 301 (365)
Q Consensus 301 ~ 301 (365)
.
T Consensus 243 S 243 (315)
T PF11312_consen 243 S 243 (315)
T ss_pred C
Confidence 5
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0018 Score=48.05 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=46.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...+++.|+.+||+.+++ +...+.+.|+.|...|++.+... ++.|++++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-----~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-----NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-----CCceeecHHH
Confidence 4456667653368999999999999 57899999999999999998641 4678887643
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0098 Score=54.31 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-C--C--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-A--I-- 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~-- 256 (365)
.++++.+. ..++..+||.=+|.|+.+..+++..|+.+++++|. +.+++.+++ ..|++++.+++.+ . .
T Consensus 10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 45666665 56778999999999999999999987799999999 888888764 3589999988876 1 1
Q ss_pred ---CCceEEEec
Q 017835 257 ---PPADAVLIK 265 (365)
Q Consensus 257 ---~~~D~i~~~ 265 (365)
..+|.|++-
T Consensus 88 ~~~~~vDgIl~D 99 (305)
T TIGR00006 88 LLVTKIDGILVD 99 (305)
T ss_pred cCCCcccEEEEe
Confidence 236776664
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=50.15 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=67.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C----CCceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I----PPADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~----~~~D~i~~ 264 (365)
.+.++||+=||+|.++++.+.+. -.+++.+|. +..+..+++ .++++++..|.+.. . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46899999999999999988884 247899998 666666654 45789999997652 1 25999988
Q ss_pred ccccccCChhHHHHHHHHHH--HhcccCCCCcEEEEEeeecC
Q 017835 265 KCVLHNWNDEECVKILKNCK--KAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~--~~L~p~~~gG~lli~e~~~~ 304 (365)
---.. .... ..+++..+. ..|++ +.++|+|....
T Consensus 121 DPPY~-~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYA-KGLY-YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STT-SCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcc-cchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 64332 1211 356677776 68888 67888887655
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0014 Score=44.79 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+++|.--.++.|+..|.. ++|.|+.+||+.+|+ +...+.+-|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 344445566777777732 389999999999999 5788999999999999999875
|
... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.029 Score=57.83 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=73.7
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC----C--------------------------------------C
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF----P--------------------------------------H 224 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p--------------------------------------~ 224 (365)
+..++....| .++...++|-.||+|.++++.+... | .
T Consensus 178 Aaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 3444444442 2457899999999999998876531 1 2
Q ss_pred CeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC----CceEEEeccccc-cCC-hhHHHHHHHHHHHhcc-
Q 017835 225 IECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP----PADAVLIKCVLH-NWN-DEECVKILKNCKKAIA- 288 (365)
Q Consensus 225 ~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~----~~D~i~~~~vlh-~~~-~~~~~~~L~~i~~~L~- 288 (365)
.+++++|+ +.+++.++. .+++.+..+|+.+ +.+ .+|+|+++--.. .+. .++..++.+.+.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36899999 888888775 4578999999987 322 389998873332 122 2344555555555554
Q ss_pred --cCCCCcEEEEEee
Q 017835 289 --INGKAGKVIIIDI 301 (365)
Q Consensus 289 --p~~~gG~lli~e~ 301 (365)
| |+++.++..
T Consensus 337 ~~~---g~~~~llt~ 348 (702)
T PRK11783 337 QFG---GWNAALFSS 348 (702)
T ss_pred hCC---CCeEEEEeC
Confidence 6 788877654
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.014 Score=58.03 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=47.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHHHhccc----C--CCeEEEeCCCCCC--------C
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPH--------IECTVFDQ-PHVVADLKS----N--GNLKYVGGNMFEA--------I 256 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~----~--~~i~~~~~d~~~~--------~ 256 (365)
...+|+|.+||+|.++..++...+. ..++++|+ +..+..++. . ..+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 56789998 666666653 1 2455666665541 1
Q ss_pred CCceEEEec
Q 017835 257 PPADAVLIK 265 (365)
Q Consensus 257 ~~~D~i~~~ 265 (365)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 359999986
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.037 Score=47.80 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhcc-------cCCCeEEEeCCCCCCC---------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLK-------SNGNLKYVGGNMFEAI---------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~~~---------~~~ 259 (365)
+-+++++||||.=+|.-+.+++...|. .+++.+|. +...+... -...|+++.+...+.+ ..|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 456789999999999999999998865 58888887 44444433 2788999999887731 248
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|.+++- +|-+. -.....++.+.+|+ || ++++|.++
T Consensus 151 DfaFvD----adK~n-Y~~y~e~~l~Llr~---GG-vi~~DNvl 185 (237)
T KOG1663|consen 151 DFAFVD----ADKDN-YSNYYERLLRLLRV---GG-VIVVDNVL 185 (237)
T ss_pred eEEEEc----cchHH-HHHHHHHHHhhccc---cc-EEEEeccc
Confidence 988763 34444 35888999999999 55 55555533
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.01 Score=43.31 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+.|.++||+++++ ++..++++++.|...|+++... |.+|.|.++...+
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~----G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR----GRGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET----STTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC----CCCCceeecCCHH
Confidence 46999999999999 5799999999999999998765 2258899886544
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0045 Score=43.26 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=46.0
Q ss_pred HHcCcccccccCCC-CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 40 IQLGIPDIIHNHAK-PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 40 ~~lglf~~L~~~~~-~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
.+-.|++.|...++ ++|+.+||+.+|+ +...+++.|.-|...|++...+.. ++.|+++.
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~~----~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGGT----PPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC----CCceEeec
Confidence 44566777776533 3999999999999 568899999999999999986521 46777764
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0046 Score=47.30 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=38.0
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeec-h---HHHHhccc---CCCeEEEeCCCCCC---C--CCceEEEeccccc
Q 017835 205 VDVGGGTGTLASAIAKKFPHI---ECTVFDQ-P---HVVADLKS---NGNLKYVGGNMFEA---I--PPADAVLIKCVLH 269 (365)
Q Consensus 205 LDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~~---~--~~~D~i~~~~vlh 269 (365)
||||+..|..+..+++..+.. +++++|. + ...+..++ ..+++++.++..+- + ..+|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988876554 6899998 5 23333332 67899999998762 3 3589988843 22
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
..+.+..-++.+.+.|+| ||.+++
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~ 103 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVF 103 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEE
Confidence 234567788999999999 665554
|
|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0026 Score=40.88 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=37.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL 89 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 89 (365)
++.|...|.+ ++.++.||++.+++ +...+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 4456666775 89999999999999 67999999999999999874
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.014 Score=48.46 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
-++|++++.+. |. .. +++.|+++||+..++ ++..++++|+.|...|++..... .+|.|.+..-..
T Consensus 8 ~yAl~~l~~lA-~~--~~-~~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~rG----~~GGy~Lar~p~ 72 (164)
T PRK10857 8 RYAVTAMLDVA-LN--SE-AGPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVRG----PGGGYLLGKDAS 72 (164)
T ss_pred HHHHHHHHHHH-hC--CC-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC----CCCCeeccCCHH
Confidence 35666666666 21 21 268999999999999 57999999999999999998642 257899876443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.045 Score=46.72 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=74.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-----CCCeEEEeCCCCC---CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-----NGNLKYVGGNMFE---AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~i~~~~~d~~~---~~~--~~D~i~~~~v 267 (365)
..++.+||.||-|-|-....+.++-|..+.++---|.+.++.+. ..+|.+..|-..+ .++ .||-|+.--.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 36789999999999999999998888766655333888888875 5778777775444 344 4888876432
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
-.+ -++...+.+.+.+.||| +|.+-.+....
T Consensus 179 ~e~--yEdl~~~hqh~~rLLkP---~gv~SyfNg~~ 209 (271)
T KOG1709|consen 179 SEL--YEDLRHFHQHVVRLLKP---EGVFSYFNGLG 209 (271)
T ss_pred hhH--HHHHHHHHHHHhhhcCC---CceEEEecCcc
Confidence 221 24558888999999999 88877766544
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.058 Score=48.68 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=102.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeechHHHHhccc----------------------------CCCeEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQPHVVADLKS----------------------------NGNLKY 247 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----------------------------~~~i~~ 247 (365)
......|+.+|||.-.+...|...+ +.++++-+|.|.+++.--. ..+..+
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3567899999999999999999987 7788999998776653210 345566
Q ss_pred EeCCCCC--CC----------CC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchh
Q 017835 248 VGGNMFE--AI----------PP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE 314 (365)
Q Consensus 248 ~~~d~~~--~~----------~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 314 (365)
...|+.+ .+ .+ .-++++-.+|-++++++...+++-+.+...- +.+++.|.+.+.+....
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~---- 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGK---- 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHH----
Confidence 6666664 11 11 3455667888889999999999999999874 89999999986654321
Q ss_pred hhhhhhhhhh--hc-cC--ccccCHHHHHHHHHhcCCccceEEEc
Q 017835 315 TQLFMDMLMM--VL-VK--GEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 315 ~~~~~d~~~~--~~-~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.+--+.. .. .. ...-|.+..++-+.++||.-+.+..+
T Consensus 237 ---vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 ---VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ---HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 1111111 00 01 12238888999999999998877655
|
|
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0082 Score=41.71 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.++.|..+|++.+++ +...+.+.++.|...|++++....+|+....|++|+.|
T Consensus 16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 379999999999999 67899999999999999988653223222458888754
|
|
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0055 Score=54.76 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=47.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+.|++.|.....|+|+.|||+++|+ +..-+.|+|..|+..|++.++ ++.|++++...
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~-------~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSD-------GRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-------CCEEEecHHHH
Confidence 4566677654478999999999999 468899999999999999875 57899987543
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.036 Score=38.19 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
.++|..+||+.+|+ +...+.+.|+.|...|++.... .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC------CCeEEeCC
Confidence 68999999999999 5789999999999999999874 37787764
|
|
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0052 Score=54.76 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=46.8
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...+.++++.|||+++|+ +...+.|+|..|+..|+++.++. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~-----~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE-----DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEeehHHH
Confidence 4456666653345679999999999 46889999999999999999862 4689999754
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.046 Score=51.72 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=69.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC--C--CCceEEEeccccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA--I--PPADAVLIKCVLH 269 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~--~--~~~D~i~~~~vlh 269 (365)
.+|||.-||+|..+++++.+.++ -+++..|. +..++.+++ ..++++..+|...- . ..||+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999998654 47899999 888877764 34578888888762 1 3599998844 2
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..+ ..++..+.+.+++ ||.|.|.-
T Consensus 124 --Gs~--~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 124 --GTP--APFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred --CCc--HHHHHHHHHhccc---CCEEEEEe
Confidence 222 3578888888888 88888874
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0064 Score=55.17 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=46.6
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.|++.|.+.++++|+.|||+++|+ +..-+.|+|..|+..||++.+.. .+.|++++...
T Consensus 32 ~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~ 89 (274)
T PRK11569 32 KLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-----LGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEecCHHHH
Confidence 345555543478999999999999 56889999999999999998642 58899987543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.04 Score=52.20 Aligned_cols=96 Identities=11% Similarity=0.185 Sum_probs=73.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc--------CCCeEEEeCCCCCCC------C-CceEEE
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEAI------P-PADAVL 263 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~------~-~~D~i~ 263 (365)
+++|||+=|=||.++...+.. ++ ++|.+|+ ...++.+++ ..++.++++|.++-+ . .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 899999999999999887776 56 8999999 778888875 567899999999822 2 599999
Q ss_pred eccc-cc-----cCC-hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCV-LH-----NWN-DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~v-lh-----~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+--- +- -|+ ..+-..++..+.+.|+| ||.++++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~ 337 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSC 337 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 8311 10 122 12336788899999999 888888664
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0072 Score=54.73 Aligned_cols=58 Identities=9% Similarity=0.213 Sum_probs=46.6
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|..|+..|++..+.. .+.|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ-----LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEEecHHH
Confidence 3455555544468999999999999 56889999999999999988642 5789998744
|
|
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0078 Score=46.82 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 31 VNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 31 ~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
..+++|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+++.... |..-.|++.+
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r~---Gr~~~Y~l~~ 75 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRKQ---GKWVHYRLSP 75 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE---cCEEEEEECc
Confidence 456667777788888888642 68999999999999 56889999999999999998762 1123477765
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.023 Score=54.72 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=65.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--C-CC---CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--A-IP---PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~~---~~D~i~~ 264 (365)
..+..+++|+=||.|.++..|+++ ..+++++++ ++.++.|++ -.+++|+.++..+ + .. .+|+|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999998 888888875 4569999999887 2 21 4799887
Q ss_pred ccccccCChhHHH-HHHHHHHHhcccCCCCcEEEEE
Q 017835 265 KCVLHNWNDEECV-KILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 265 ~~vlh~~~~~~~~-~~L~~i~~~L~p~~~gG~lli~ 299 (365)
- -|..-+. .+++.+.+.-.+ ..++|.
T Consensus 369 D-----PPR~G~~~~~lk~l~~~~p~----~IvYVS 395 (432)
T COG2265 369 D-----PPRAGADREVLKQLAKLKPK----RIVYVS 395 (432)
T ss_pred C-----CCCCCCCHHHHHHHHhcCCC----cEEEEe
Confidence 2 2222223 566666555433 566664
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.058 Score=49.36 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=93.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCC-CCC------C----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFE-AIP------P---- 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~-~~~------~---- 258 (365)
.+...||-+|||-=.-+.++-.. +++++.-+|.|++++.-++ ..++++++.|+.+ +++ +
T Consensus 91 ~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 34789999999966555444322 2578888999999987553 3489999999995 332 1
Q ss_pred -ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc-chhhhhhhhhhh-hhccCccccCHH
Q 017835 259 -ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK-TTETQLFMDMLM-MVLVKGEERNEK 335 (365)
Q Consensus 259 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~-~~~~~~~~d~~~-~~~~~~~~~t~~ 335 (365)
.-++++-.++-+++.+++.++|+.|...+.| |..++.............. ............ ............
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 246 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHH
Confidence 3567888999999999999999999999998 5555544321211110000 000000000000 000111223678
Q ss_pred HHHHHHHhcCCccceE
Q 017835 336 EWAKLFFEAGFSDYKI 351 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~ 351 (365)
++..++.+.||.....
T Consensus 247 e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 247 EIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhcCEEEEec
Confidence 9999999999987665
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.043 Score=52.79 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=63.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCe---EEEeechHHHHhcccCCCeEEEeCCCCCC---CC-CceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIE---CTVFDQPHVVADLKSNGNLKYVGGNMFEA---IP-PADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---~~-~~D~i~~~~vlh~~ 271 (365)
..-+.|+|...|.|.++.+|.+. | +- ++-.+-+..+...-...-| -+-.|.-++ .| .||++.+.+++..+
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLI-G~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLI-GVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccc-hhccchhhccCCCCcchhheehhhhhhhh
Confidence 45689999999999999999764 2 21 2222223333333211111 123344444 44 49999999999877
Q ss_pred Chh-HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 272 NDE-ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 272 ~~~-~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+. +...+|-++-|.|+| ||.++|-|.
T Consensus 441 ~~rC~~~~illEmDRILRP---~G~~iiRD~ 468 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRP---GGWVIIRDT 468 (506)
T ss_pred cccccHHHHHHHhHhhcCC---CceEEEecc
Confidence 543 457889999999999 899988653
|
; GO: 0008168 methyltransferase activity |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.052 Score=46.49 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCCeEEEecCCccHHHHHHHH---HC-CCCeEEEeec--hHHHHhccc----CCCeEEEeCCCCCC-----C------CC
Q 017835 200 GLNTLVDVGGGTGTLASAIAK---KF-PHIECTVFDQ--PHVVADLKS----NGNLKYVGGNMFEA-----I------PP 258 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~---~~-p~~~~~~~D~--~~~~~~a~~----~~~i~~~~~d~~~~-----~------~~ 258 (365)
.+..|+++|--.|+-+..++. .+ +..+++++|+ ...-..+.+ .+||+++.||..++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 358999999988877766544 44 7889999998 233333333 48999999998773 1 11
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
..+|+ -..-|... .+.+.|+.....++| |+.++|.|....
T Consensus 112 ~vlVi-lDs~H~~~--hvl~eL~~y~plv~~---G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVI-LDSSHTHE--HVLAELEAYAPLVSP---GSYLIVEDTIIE 151 (206)
T ss_dssp SEEEE-ESS----S--SHHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred ceEEE-ECCCccHH--HHHHHHHHhCccCCC---CCEEEEEecccc
Confidence 33333 33334333 347788889999999 888888776543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0096 Score=44.92 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ 232 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~ 232 (365)
.+....+|||||+|.+..-|... +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 45779999999999998888876 678899985
|
; GO: 0008168 methyltransferase activity |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.088 Score=45.83 Aligned_cols=148 Identities=12% Similarity=0.142 Sum_probs=91.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhcccCCCeEEEeC-CCCCC----CC-Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ--PHVVADLKSNGNLKYVGG-NMFEA----IP-PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~i~~~~~-d~~~~----~~-~~D 260 (365)
.+++.|+ ....+..+||||..||.++..+++.. -.++.++|. ....-..+...|+..+.. |+..- +. ..|
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 4455565 34578999999999999999999873 347899997 445555666778776644 44431 22 367
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEE-EEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKV-IIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~l-li~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
++++--.+ ++. ..+|-.+...++| ++-+ +++.+-....... ........| ......-..++.+
T Consensus 147 ~~v~DvSF--ISL---~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~~--v~kkGvv~d------~~~~~~v~~~i~~ 210 (245)
T COG1189 147 LIVIDVSF--ISL---KLILPALLLLLKD---GGDLVLLVKPQFEAGREQ--VGKKGVVRD------PKLHAEVLSKIEN 210 (245)
T ss_pred eEEEEeeh--hhH---HHHHHHHHHhcCC---CceEEEEecchhhhhhhh--cCcCceecC------cchHHHHHHHHHH
Confidence 77774333 233 6788999999998 5544 3444433222111 000000000 0122235577888
Q ss_pred HHHhcCCccceEEEc
Q 017835 340 LFFEAGFSDYKITDV 354 (365)
Q Consensus 340 ll~~aGf~~~~~~~~ 354 (365)
++.+.||++..+...
T Consensus 211 ~~~~~g~~~~gl~~S 225 (245)
T COG1189 211 FAKELGFQVKGLIKS 225 (245)
T ss_pred HHhhcCcEEeeeEcc
Confidence 899999998877665
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.0035 Score=43.80 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..++..|-. .++.|+++||+.+|+ +...+++.|+-|...|+++..+
T Consensus 10 E~~vy~~Ll~-~~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLK-NGPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHH-HCHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 3444545543 289999999999999 5799999999999999999986
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.027 Score=35.88 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
-+.|..+||+.+++ +...+.+.|+.|...|++... .+.|.++
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~-------~~~~~i~ 48 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISRE-------GGRIVIL 48 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEe-------CCEEEEC
Confidence 47999999999999 578899999999999999876 3666643
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.012 Score=52.81 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=45.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.|++.|... +++|+.|||+++|+ +..-+.|+|+.|+..||+.+... ++.|++++...
T Consensus 18 ~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~-----~~~Y~lG~~~~ 74 (257)
T PRK15090 18 GILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE-----SEKYSLTLKLF 74 (257)
T ss_pred HHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEecHHHH
Confidence 345555543 68999999999999 56889999999999999998642 58899997543
|
|
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.011 Score=53.23 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=47.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|...|+++++.. ++.|++++...
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-----~~~Y~Lg~~~~ 72 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-----DDSFRLTLKVR 72 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-----CCcEEEcHHHH
Confidence 4456666544457999999999999 57899999999999999998742 57899997554
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.41 Score=45.32 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=45.1
Q ss_pred CCCeEEEecCCccHHHHHHH--------HH-------CCCCeEEEeechH-----HHHhcc---c------------CCC
Q 017835 200 GLNTLVDVGGGTGTLASAIA--------KK-------FPHIECTVFDQPH-----VVADLK---S------------NGN 244 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~---~------------~~~ 244 (365)
+..+|+|+|||+|.++..+. ++ -|..++..-|+|. ...... + ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46799999999997765442 22 2567777777752 111110 0 011
Q ss_pred ---eEEEeCCCCCC-CC--CceEEEeccccccCC
Q 017835 245 ---LKYVGGNMFEA-IP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 245 ---i~~~~~d~~~~-~~--~~D~i~~~~vlh~~~ 272 (365)
+.-++|.|... +| ..+++++++.||-++
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 23456788773 55 489999999998554
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.039 Score=44.30 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=48.1
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
++|++.+.+..- .. +++.|.++||+.+++ ++..++++|+.|...|++..... ..|.|.++....
T Consensus 9 YAl~~l~~La~~---~~-~~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~G----~~Ggy~l~~~~~ 72 (135)
T TIGR02010 9 YAVTAMLDLALN---AE-TGPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVRG----PGGGYQLGRPAE 72 (135)
T ss_pred HHHHHHHHHHhC---CC-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeC----CCCCEeccCCHH
Confidence 456666665432 22 258999999999999 57999999999999999987531 157798886444
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.18 Score=46.74 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=77.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--CC-CCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--AI-PPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~-~~~D~i~~~~v 267 (365)
..+.+|||.=+|.|.+++.++.... .+++.+|+ |..++.+++ ..++..+.||... +. +.+|=|++.+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 4589999999999999999998743 34999999 888887764 5568999999988 33 45999999764
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
- .+.+++..+.+.+++ ||.+...+.+..+.
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence 3 235677788888898 88888888766554
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.051 Score=49.70 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=49.9
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE 254 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~ 254 (365)
..++++.+. ..++..+||.=-|.|+.+.++++++|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 355666666 67788999999999999999999999999999999 888887764 5789999888754
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.016 Score=40.17 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=45.2
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCC--cchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTK--TQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~--~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
|++.|.+.+.|++..+|++.++....+ +..+++.|++|...|++.+.+ .+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC------CcccccCHHHH
Confidence 345566556899999999999764323 478999999999999888765 56677887654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.21 Score=46.22 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=72.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeC-CCCC-CCCC--ceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGG-NMFE-AIPP--ADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~-d~~~-~~~~--~D~i~~~~ 266 (365)
..++..|||==||||.++++..-. +++++|.|+ ..|+.-++. -....+... |+.. |+++ +|.|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 467789999999999999887766 889999999 778887774 233434444 8777 7774 99998732
Q ss_pred c------cccCC-hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 267 V------LHNWN-DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 267 v------lh~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
- ..--. ++-..++|..++++|++ ||++.+.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1 11111 34457889999999999 888887554
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.13 Score=46.77 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=68.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCCC------CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEA------IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~------~~~~D~i~ 263 (365)
..+++|||+=|=||.++...+.. .-.+++.+|. ...++.+++ ..+++++..|+++. ...||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 34689999999999999876654 2347999999 778888774 46899999999872 23599999
Q ss_pred ec---cccccCC-hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IK---CVLHNWN-DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~---~vlh~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+- ..=..+. ...-.++++.+.+.|+| ||.|+....
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 83 1111121 12336788999999999 787765543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.02 Score=41.02 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.+..+|+..+++ +...+.+.|+.|...|++... ++.|.+|+.|..+.
T Consensus 18 ~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 18 GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-------DGKYRLTEKGKEFL 66 (77)
T ss_dssp T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-------TTEEEE-HHHHHHH
T ss_pred CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-------CCEEEECccHHHHH
Confidence 79999999999999 689999999999999999764 69999999997433
|
|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.016 Score=37.21 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=35.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCcee
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFA 88 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~ 88 (365)
+..|+..|.+. ++.|..+||+.+|+ +...+.+.|+-|...|+++
T Consensus 5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 44566777763 78999999999999 5799999999999999985
|
... |
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.0084 Score=43.33 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=46.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCcc-ceEecCccch
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQE-EGYILTSASK 108 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~-~~y~~t~~~~ 108 (365)
+++|+..|... +..+..+|.+.+++ +...+.+.|+.|...|+++....-.++.+ -.|++|+.|+
T Consensus 2 Rl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 2 RLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred HHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 55566666642 68999999999999 57999999999999999998653222111 2499999887
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.13 Score=43.56 Aligned_cols=84 Identities=21% Similarity=0.337 Sum_probs=62.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCC-----C------CC-
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEA-----I------PP- 258 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~-----~------~~- 258 (365)
+...|+-+|||-=.....+....++++++-+|.|++++.-++ ..+.+++..|+.++ + ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 345999999999999999998878899999999998876553 23466899999972 1 22
Q ss_pred ceEEEeccccccCChhHHHHHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNC 283 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i 283 (365)
.-++++-.++.+++.+++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 5678888999999999999998876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.25 Score=43.74 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=62.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc------------CCCeEEEeCCCCCC------CCC-ce
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS------------NGNLKYVGGNMFEA------IPP-AD 260 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~i~~~~~d~~~~------~~~-~D 260 (365)
....||++|+|+|.-++..+.. ....++.-|.+..++..+. ...+.+...+...+ .+. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4678999999999666555543 5678888888766655442 22444444433332 234 89
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+|+.+.++++-... ..++.-++..|.. ++++++.-...
T Consensus 165 lilasDvvy~~~~~--e~Lv~tla~ll~~---~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYEEESF--EGLVKTLAFLLAK---DGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeecCCcc--hhHHHHHHHHHhc---CCeEEEEEecc
Confidence 99999999754433 4566667777776 67555544433
|
|
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.028 Score=42.40 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.++.|++.|.. +++.++.+|++.+++ ....+.+.|++|...|++..... |+...|++.+...
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~---Gr~vyY~Ln~~~~ 74 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKE---GRTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEECCCcc
Confidence 45667777775 247999999999999 67999999999999999999862 2234588776553
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.25 Score=41.67 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=66.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C---CCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I---PPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~---~~~D~i~~~ 265 (365)
.+.++||+=+|+|.++.+.+.++ -.+++.+|. ......+++ ..+++++..|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 46899999999999999999885 347888887 666655553 47888888888741 1 239999996
Q ss_pred ccccc-CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 CVLHN-WNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 ~vlh~-~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
--.+. +-+.+..-++-.-..+|+| +.++++|.-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 55541 1111111122224567998 56667776543
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.13 Score=47.98 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=72.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec---hHHHHhccc-------------CCCeEEEeCCCCCC------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ---PHVVADLKS-------------NGNLKYVGGNMFEA------ 255 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-------------~~~i~~~~~d~~~~------ 255 (365)
+.+....+|+|+|.|.....++.......-+|+++ |.-+..... ...+..+.+++..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 67889999999999999888777654445566654 333332221 45678899999884
Q ss_pred CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 256 IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.+.+++|++.++.. +++. .-=+.++..-+++ |.+++-.++..+.
T Consensus 270 ~~eatvi~vNN~~F--dp~L-~lr~~eil~~ck~---gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF--DPEL-KLRSKEILQKCKD---GTRIISSKPLVPR 313 (419)
T ss_pred hhcceEEEEecccC--CHHH-HHhhHHHHhhCCC---cceEecccccccc
Confidence 24699999999883 4443 3334488888898 8888888887764
|
|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.079 Score=42.19 Aligned_cols=64 Identities=16% Similarity=0.359 Sum_probs=47.1
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+|++...+.. ... +++.|.++||+.+++ ++..++++|+.|...|++..... ..+.|.++....
T Consensus 9 ~al~~l~~la~---~~~-~~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~g----~~ggy~l~~~~~ 72 (132)
T TIGR00738 9 YALRALLDLAL---NPD-EGPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVRG----PGGGYRLARPPE 72 (132)
T ss_pred HHHHHHHHHHh---CCC-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEeccC----CCCCccCCCCHH
Confidence 45555555542 132 259999999999999 57999999999999999987531 146788876554
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.08 Score=41.30 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=51.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
+..++..|... ++.|..+||+.+++ +...+.+.++-|...|++++.....|...-.+.+|+.+..+..
T Consensus 30 q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 30 QWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 34466666653 78999999999999 5678999999999999999865322221235999998875543
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.042 Score=42.97 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=39.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT 92 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~ 92 (365)
+..+|-+|-+..+|.|+++||+.++. +...+++-|+-|...|++.+++.
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 34445455422389999999999999 67889999999999999999874
|
|
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.099 Score=42.92 Aligned_cols=64 Identities=9% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
-+++++.+.+-.. . +.+.|+++||+..++ ++..++++|..|...|+++.... -.|.|+++...+
T Consensus 8 ~YAlr~L~~LA~~---~--~~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~rG----~~GGy~La~~p~ 71 (153)
T PRK11920 8 NYAIRMLMYCAAN---D--GKLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVRG----RNGGVRLGRPAA 71 (153)
T ss_pred hHHHHHHHHHHhC---C--CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC----CCCCeeecCCHH
Confidence 3566666666422 2 257899999999999 57999999999999999998762 257899886544
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.31 Score=46.94 Aligned_cols=96 Identities=23% Similarity=0.316 Sum_probs=69.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc-----cCCCeEEEeCCCCC-CCC--CceEEEeccccccCC-
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK-----SNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWN- 272 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~- 272 (365)
+++-+|||.-.+...+-+.. .-.++-+|. +.+++... ......+...|+.. .++ +||+++....++++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 99999999998887766642 224566666 44444332 25677888888887 555 699999999998863
Q ss_pred hh-------HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 273 DE-------ECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 273 ~~-------~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
++ .+...+.+++++++| ||+.+.+...
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~ 163 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV 163 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence 32 233567899999999 9999888874
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.036 Score=47.47 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=44.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE 254 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~ 254 (365)
....|+|.-||.|+.++.++.++| .++.+|+ |.-+..|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 567999999999999999998865 6778887 666776664 6799999999998
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.088 Score=43.03 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
++.|+++||+..++ ++..++++|..|...|+++-... -.|.|+|+.-.+
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~rG----~~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVRG----KGGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeecC----CCCCccCCCChH
Confidence 48999999999999 57999999999999999998763 268899886554
|
|
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.066 Score=40.04 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=47.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+|++.+++ +...+.+.|+-|...|++.......|.....|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 34445555542 67999999999999 568899999999999999976421111123588888776443
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.18 Score=44.55 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=52.0
Q ss_pred HHHHhhccccccCCC--eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEEEe
Q 017835 188 SALIHKCKDVFEGLN--TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKYVG 249 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~--~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~ 249 (365)
+.+++.+. ++++. +|||.=+|.|..+..++.. +++++.+|. |.+....+. ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 34566665 56655 9999999999999999988 788999998 544443331 14677778
Q ss_pred CCCCC---CCC-CceEEEe
Q 017835 250 GNMFE---AIP-PADAVLI 264 (365)
Q Consensus 250 ~d~~~---~~~-~~D~i~~ 264 (365)
+|..+ ..+ .||+|++
T Consensus 152 ~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL 170 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE
Confidence 87766 222 4788876
|
|
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.077 Score=42.96 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+++.++.+||+.+++ ++..+.+.|+.|...|++.+.. .+.|++|+.|..+
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~------~~~i~LT~~G~~~ 69 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTPKGKKI 69 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec------CceEEECHHHHHH
Confidence 378999999999999 5688999999999999999764 5789999988643
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.33 Score=43.92 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=55.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc-----CCCeEEEeCCCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE 254 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~ 254 (365)
++.++.+. ..+....+|.-=|.|+.+..+++++|.. +++++|. |.+++.+++ .+|++++.++|.+
T Consensus 13 ~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 45666666 6777999999999999999999999866 4999999 999998886 5699999998765
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.059 Score=41.00 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=43.5
Q ss_pred CceEEEecccc---c-cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC
Q 017835 258 PADAVLIKCVL---H-NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 258 ~~D~i~~~~vl---h-~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
.||+|+|..|- | +|.|+-...+|+++++.|+| |.++|+|+-.-........ ...... -+ ...-...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEpQ~w~sY~~~~~-~~~~~~-~n----~~~i~lr 70 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEPQPWKSYKKAKR-LSEEIR-EN----YKSIKLR 70 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE---HHHHHTTTT-S-HHHH-HH----HHH----
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeCCCcHHHHHHhh-hhHHHH-hH----HhceEEC
Confidence 38999987664 2 46788899999999999999 5666667543111110000 000000 00 0111124
Q ss_pred HHHHHHHHHh--cCCccceEEEc
Q 017835 334 EKEWAKLFFE--AGFSDYKITDV 354 (365)
Q Consensus 334 ~~e~~~ll~~--aGf~~~~~~~~ 354 (365)
.+++.++|.+ .||+..+....
T Consensus 71 P~~F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 71 PDQFEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp GGGHHHHHTSTTT---EEEEE--
T ss_pred hHHHHHHHHhcccceEEEEEccc
Confidence 4567787777 69998765554
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.76 Score=43.20 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC---------------------------------------eEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI---------------------------------------ECT 228 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 228 (365)
..++..-. ..+...++|==||+|.++++.+-..+++ .++
T Consensus 181 aAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 181 AAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 34444444 4556899999999999999988876532 267
Q ss_pred Eeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 229 VFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 229 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
++|+ +.+++.|+. .+.|+|..+|+.. +-+ ++|+|+++-
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 9999 889988874 6789999999987 333 699999864
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.036 Score=38.78 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=35.0
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 45 PDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 45 f~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|... +..|..+||.++++ ++..++.+|+.|...|.+.+..
T Consensus 6 ~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 6 RDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 3455553 78999999999999 6799999999999999999875
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.034 Score=37.85 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=34.4
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 45 PDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 45 f~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|....+|.|..|||+++|+ +...++++|..|...|.+....
T Consensus 6 l~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 6 LEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp HHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 3344432379999999999999 5788999999999999999753
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.2 Score=41.59 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=75.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH--------C--------CCCeEEEeechH-----HHHhcc-------cCCCe--EE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK--------F--------PHIECTVFDQPH-----VVADLK-------SNGNL--KY 247 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~-----~~~~a~-------~~~~i--~~ 247 (365)
....-+|+|+||.+|..+..+... + |.+++..-|+|. ...... ...++ .-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 455679999999999998775442 1 335677778743 111111 12333 34
Q ss_pred EeCCCCCC-CC--CceEEEeccccccCCh-------------------------hHH------------HHHHHHHHHhc
Q 017835 248 VGGNMFEA-IP--PADAVLIKCVLHNWND-------------------------EEC------------VKILKNCKKAI 287 (365)
Q Consensus 248 ~~~d~~~~-~~--~~D~i~~~~vlh~~~~-------------------------~~~------------~~~L~~i~~~L 287 (365)
+++.|... +| ..|++++++.||-++. +.+ ..+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67899884 45 4999999999985431 111 12233223467
Q ss_pred ccCCCCcEEEEEeeecCCCccCc-----cch-hhhhhhhhhhhhccC--------cc--ccCHHHHHHHHHhcC-Cccc
Q 017835 288 AINGKAGKVIIIDIKMESEKADY-----KTT-ETQLFMDMLMMVLVK--------GE--ERNEKEWAKLFFEAG-FSDY 349 (365)
Q Consensus 288 ~p~~~gG~lli~e~~~~~~~~~~-----~~~-~~~~~~d~~~~~~~~--------~~--~~t~~e~~~ll~~aG-f~~~ 349 (365)
+| ||++++.-...++..... .+. ....+.++....... -+ .++.+|+++.+++.| |++.
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 88 999998877776622211 000 111233332221111 11 249999999999876 4443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.19 Score=40.57 Aligned_cols=62 Identities=10% Similarity=0.247 Sum_probs=48.0
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
++|++.+.++.+ .. +.+.+..+||+..|+ +...+++.|+.|...|+++.... ..|.|.+...
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~G----~~GG~~l~~~ 70 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVRG----KNGGIRLGKP 70 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEecC----CCCCeeecCC
Confidence 567777766654 32 257899999999999 57999999999999999998752 1467887753
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.73 Score=43.76 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=63.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHH----HHHHHHC---CCCeEEEeechH-----HHHhccc-------CCC--eE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLA----SAIAKKF---PHIECTVFDQPH-----VVADLKS-------NGN--LK 246 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~----~~l~~~~---p~~~~~~~D~~~-----~~~~a~~-------~~~--i~ 246 (365)
..|++.+. -...-+|+|+|.|.|.-= ..|+.+. |.+++|+++.|. .++.+.+ .-+ .+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 44666666 567789999999999543 3344432 778999998732 2222221 222 33
Q ss_pred EEeC--CCCCCC--------C-CceEEEeccccccCChh------HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 247 YVGG--NMFEAI--------P-PADAVLIKCVLHNWNDE------ECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 247 ~~~~--d~~~~~--------~-~~D~i~~~~vlh~~~~~------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
|... +-.+.. + ++=+|-+...||++.++ ....+|+.++ .|+| -.++++|.-.+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCCC
Confidence 3331 111111 1 23334455667888632 2455777665 6788 677888876554
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.91 Score=44.16 Aligned_cols=127 Identities=17% Similarity=0.338 Sum_probs=80.8
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcccc-ccCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-h
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDV-FEGLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-P 233 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 233 (365)
..|+.+.+++-.-..|+++.. ..+.+..++. .+....|+-+|+|-|-+..+..+. ...++.++++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 456777777766555655432 3444444422 123578889999999887776553 34567788876 6
Q ss_pred HHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccccccCChhH-HHHHHHHHHHhcccCCCCcEEE
Q 017835 234 HVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEE-CVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 234 ~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~-~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.++.-.+. ..+|+++..||.+ ..| .+|++++- .|.-+.|.+ ..+-|.-+-+.||| +|.-+
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkp---dgIsI 475 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKP---DGISI 475 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCC---CceEc
Confidence 65554442 7899999999998 333 48887653 333343322 23447778888999 65444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.11 Score=49.05 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=37.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCC
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNM 252 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~ 252 (365)
+|||+=||.|.++..|++.+ .+++++|. +.+++.|+. .++++|+.++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 89999999999999999874 48999998 888888874 56889987654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.43 Score=39.09 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=46.2
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
|...+.. +++.+..+||+.+++ +...+.++|+.|...|++.... ...+++|+.+..+.
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~------~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP------YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec------CCceEECchHHHHH
Confidence 3344443 368999999999999 5789999999999999998764 46788888876543
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.00 E-value=3 Score=36.67 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=50.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC-----CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP-----PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-----~~D~i~~~~v 267 (365)
-.+++||=||=.- ..+++++-.++..+++++|+ ...++..++ .-.|+.+..|+.+++| .||+++.--.
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 3468999998443 44555555566779999998 666666553 4459999999999876 3999988432
Q ss_pred cccCChhHHHHHHHHHHHhccc
Q 017835 268 LHNWNDEECVKILKNCKKAIAI 289 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p 289 (365)
++.+-..-++.+...+||.
T Consensus 122 ---yT~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 122 ---YTPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-S
T ss_pred ---CCHHHHHHHHHHHHHHhCC
Confidence 3445667788899999997
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.11 Score=36.15 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=42.7
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.++..|.+ ++.|..+||+++++ ....+++.++.|.+.|+..... +..|.+....
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~------~~g~~l~~~~ 57 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV------GKGYRLPPPI 57 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec------CCceEecCcc
Confidence 455667775 68999999999999 5789999999999999966543 3566665443
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.14 Score=40.78 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
++.|+.+||+++++ ++..+.++|+.|...|++..... ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g----~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRG----VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCC----CCCChhhcC
Confidence 68999999999999 57999999999999999986531 146677754
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.28 Score=32.23 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHH
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRI 80 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~ 80 (365)
.-.+|.+|++.|-||.= ...|.+|||+.+|++ ...+...||-
T Consensus 5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~~lgis---~st~~~~LRr 46 (53)
T PF04967_consen 5 QREILKAAYELGYFDVP----RRITLEELAEELGIS---KSTVSEHLRR 46 (53)
T ss_pred HHHHHHHHHHcCCCCCC----CcCCHHHHHHHhCCC---HHHHHHHHHH
Confidence 45789999999999873 479999999999994 5656665553
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.42 Score=32.45 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|..+||+.+++ +...+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 359999999999 5788999999999999998764
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.034 Score=44.88 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=37.5
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.|+|++.+|+.|+.-++-...++.+++.||| ||+|-|.-+
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 49999999999999999999999999999999 999988643
|
|
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.19 Score=41.15 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.++.+..+||+.+++ .+..+..+++-|...|++++.. .+.+++|+.|+...
T Consensus 22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~------y~gi~LT~~G~~~a 72 (154)
T COG1321 22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP------YGGVTLTEKGREKA 72 (154)
T ss_pred cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec------CCCeEEChhhHHHH
Confidence 379999999999999 4688999999999999999987 79999999887443
|
|
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.12 Score=41.79 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=48.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.|+..|.. .++.|..+||+.+++ +...+.++++-|...|++.+....+|+..-...+|+.|..+.
T Consensus 44 ~vL~~l~~-~~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 44 KVLCSIRC-AACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 34555654 278999999999999 679999999999999999987532222123478888887544
|
|
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.13 Score=45.70 Aligned_cols=65 Identities=14% Similarity=0.323 Sum_probs=55.2
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 35 SLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 35 ~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++....+.+|+=.|.+ +|+|.+||-..+++ ++..+..-|+-|...|++.++ ++.|++|..|+.++
T Consensus 9 if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~-------~~~Y~LS~~G~iiv 73 (260)
T COG4742 9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQE-------GDRYSLSSLGKIIV 73 (260)
T ss_pred HHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEec-------CCEEEecchHHHHH
Confidence 3445567778888886 89999999999999 467888889999999999998 59999999998665
|
|
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.15 Score=41.33 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=47.3
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|...+++.|..+||+.+++ +...+.++++-|...|++++....+|...-.+.+|+.|+.+.
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence 34444432246899999999999 678999999999999999997532222123478888887544
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.47 Score=38.09 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=65.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~vl 268 (365)
.++..+.+|+|.|.|....+.++.. -...+++++ |-.+...+- ..+..|...|+++ ++.+|..++++.+=
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgae 148 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAE 148 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehH
Confidence 3566899999999999987777664 346788888 555444331 6788888899998 67777666665433
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
..++| +-.+++.-|+. +.+++-.-+-+|.
T Consensus 149 s~m~d-----Le~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 149 SVMPD-----LEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred HHHhh-----hHHHHHhhCcC---CCeEEEEecCCCc
Confidence 32332 22355555666 6777766554443
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.15 Score=34.06 Aligned_cols=44 Identities=9% Similarity=0.247 Sum_probs=37.7
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|++.|... +..|+++||+.+++ .+.-++|=|..|...|++.+..
T Consensus 5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 44556553 79999999999999 5789999999999999999985
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.19 Score=38.62 Aligned_cols=56 Identities=13% Similarity=0.369 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..+||+.+++ +...+.++++.|...|++.+....+|...-.+.+|+.+..+.
T Consensus 42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 68999999999999 679999999999999999987532222112377887776433
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.076 Score=35.98 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|+.+||+.+++ +...+.+.++.|...|++++..
T Consensus 22 ~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 22 LTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp EEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 899999999999 6799999999999999999875
|
... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.67 Score=42.27 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=40.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeC----CCCCCC--C--CceEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGG----NMFEAI--P--PADAV 262 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~----d~~~~~--~--~~D~i 262 (365)
...++||||+|....=.-|..+..+.++++.|+ +..++.|++ .++|+++.. +++... + .||+.
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 357999999999855333333333889999999 778887774 568888644 344422 1 39999
Q ss_pred EeccccccC
Q 017835 263 LIKCVLHNW 271 (365)
Q Consensus 263 ~~~~vlh~~ 271 (365)
+|.--+|.=
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 998887753
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.17 Score=43.65 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=46.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc-CCCCcc-ceEecCccchhhh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT-SENEQE-EGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~-~~y~~t~~~~~l~ 111 (365)
.|+..|... ++.|+.+||+.+++ ++..+++.|+.|...|++++... ...|.. -.|++|+.+..+.
T Consensus 5 ~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 5 DILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 355556543 68999999999999 57999999999999999987621 000101 2378888876444
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.21 Score=42.16 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCC--CCccceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSE--NEQEEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~~~y~~t~~~~ 108 (365)
..+|.--.++.|++.|...+.+.|+.+|++.+ ++ +...+.|.|+.|...|+++...... ++.+..|++++.+-
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45566667788888887643459999999999 56 4577999999999999999754210 11234588887654
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.65 Score=47.79 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=60.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-------C-----CCeEEEeec-h---HHHHhcc-----------c----------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF-------P-----HIECTVFDQ-P---HVVADLK-----------S---------- 241 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~-----------~---------- 241 (365)
+..-+|+|+|=|+|.......+.+ | .++++.++. | ..+..+. +
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344799999999999777666544 3 467888885 2 1111110 0
Q ss_pred --------CC--CeEEEeCCCCCC---CC-CceEEEecc-ccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 242 --------NG--NLKYVGGNMFEA---IP-PADAVLIKC-VLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 242 --------~~--~i~~~~~d~~~~---~~-~~D~i~~~~-vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.. ++++..||+.+. +. .+|++++-. .-..-++--..++|+++++.++| ||++.-.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEEEe
Confidence 12 334567887662 22 489988742 22222333336789999999999 7777643
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.52 Score=35.06 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=51.7
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh--ccCcccc-------CHH
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV--LVKGEER-------NEK 335 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~-------t~~ 335 (365)
..+|-|++.++..++|+++...-+ +.+++. .. |.. .++.+.... .+.+..| .++
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~-----~~~ifT-fA-P~T----------~~L~~m~~iG~lFP~~dRsp~i~~~~e~ 64 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR-----GSLIFT-FA-PRT----------PLLALMHAIGKLFPRPDRSPRIYPHREE 64 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc-----CcEEEE-EC-CCC----------HHHHHHHHHhccCCCCCCCCcEEEeCHH
Confidence 356667899999999999988765 455442 11 111 111111111 1333333 789
Q ss_pred HHHHHHHhcCCccceEEEcC-Cc--eeEEEEeC
Q 017835 336 EWAKLFFEAGFSDYKITDVL-GV--RSLIEVYP 365 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~~~-~~--~~vi~~~~ 365 (365)
++.+.++++||++.+...+. ++ ...+|++|
T Consensus 65 ~l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 65 DLRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 99999999999999888874 33 33555543
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.16 Score=37.53 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++....||.+.+ ++ .+..+.+-|+.|.+.|++++.........-.|++|+.++.|.
T Consensus 17 g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 17 GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 799999999999 88 578999999999999999986421100013599999998554
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.19 Score=33.20 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=32.5
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL 89 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 89 (365)
++..|....++.|+++||+.+++ ..+.+++-+..|...|+.-.
T Consensus 5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~~~I~ 47 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWGIPIE 47 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEE
Confidence 34445333467999999999999 67999999999999994333
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.32 Score=32.69 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
++.|..+|++.+++ +...+.+.|+.|...|++..... +....|.++.
T Consensus 9 ~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~~---~~~~~~~~~~ 55 (66)
T smart00418 9 GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRRE---GKRVYYSLTD 55 (66)
T ss_pred CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeeec---CCEEEEEEch
Confidence 68999999999999 56889999999999999997641 1123466554
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.46 Score=31.54 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=31.9
Q ss_pred CCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..+ |..+||+.+++ +...+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 5789999999999999998764
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.066 Score=35.93 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|..+||+.+++ +...+.++++.|...|++++..
T Consensus 16 ~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 16 GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 68999999999999 6799999999999999999875
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.2 Score=43.22 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=45.1
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.++..|... ++.+..+||+.+++ ++..+.+.|+.|...|++.+.+. ....|.+|+.+
T Consensus 146 ~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~----r~~~~~lT~~G 203 (203)
T TIGR01884 146 LKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR----KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC----CccEEEeCCCC
Confidence 3455555542 67999999999999 56889999999999999998851 14668888754
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.1 Score=40.75 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=75.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhcccCCCeEEEeCCCCC----C-CCCceEEEeccccccCCh--
Q 017835 203 TLVDVGGGTGTLASAIAKKFPHIE-CTVFDQ-PHVVADLKSNGNLKYVGGNMFE----A-IPPADAVLIKCVLHNWND-- 273 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~i~~~~~d~~~----~-~~~~D~i~~~~vlh~~~~-- 273 (365)
+++|+=||.|.+...+.+.. .+ +..+|. +..++..+..-.-.+..+|+.+ . .+.+|+++....+..++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999988773 44 566887 6666655542111256677776 1 346999998766654431
Q ss_pred ------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 274 ------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 274 ------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
+....++.++.++++-. .-+++++|.+..-... .......+|.+.|++.||.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~--------------------~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLTH--------------------DNGNTLKVILNTLEELGYN 137 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhcc--------------------CchHHHHHHHHHHHhCCcE
Confidence 12233444444444321 2367888876422110 0112467788888999998
Q ss_pred cceE
Q 017835 348 DYKI 351 (365)
Q Consensus 348 ~~~~ 351 (365)
+...
T Consensus 138 ~~~~ 141 (275)
T cd00315 138 VYWK 141 (275)
T ss_pred EEEE
Confidence 6433
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.33 Score=36.08 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 57 LNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 57 ~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.+||+.+++ +...+.+.|+.|...|++.... +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC------CCceEechhHHHHH
Confidence 5689999999 5789999999999999999985 46899998887543
|
iron dependent repressor |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.25 E-value=3.2 Score=38.61 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=65.2
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCC---CCCCCCC-ceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGG-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGN---MFEAIPP-ADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~~~~-~D~i~~~~vlh~~ 271 (365)
..++.+|+=+|.| .|.++..+++..- .+++++|. ++-.+.+++...-.++... ..++... +|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 6778888888876 4577888888764 99999999 7778888874444444433 2222232 899887654 2
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
..+...-+.|++ ||+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 336677788898 99999987653
|
|
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.22 Score=42.86 Aligned_cols=56 Identities=14% Similarity=0.351 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 31 VNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 31 ~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
=..++|...++..+++.|+.. +|+.+.|||+++|+| ..-+..-+..|...|++.-+
T Consensus 15 dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgLp---qst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 15 DVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGLP---QSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCc---hhhhhhhHHHHHhcCceeee
Confidence 355788888999999999974 899999999999994 67788889999999999864
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.22 E-value=3.6 Score=38.80 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhcc----c--CCCeEEEeCCCCC---CCC---CceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH--IECTVFDQ-PHVVADLK----S--NGNLKYVGGNMFE---AIP---PADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~--~~~i~~~~~d~~~---~~~---~~D~i 262 (365)
..++.+|||.-++.|.=+..++...++ ..++.+|. +.-+.... + ..++.++..|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 577899999999999999999998765 56689998 44444433 2 4556777777653 122 28998
Q ss_pred Eec------ccc-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 263 LIK------CVL-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 263 ~~~------~vl-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
++- .++ ..+...+ -.++|+.+.+.||| ||.|+........
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~ 293 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTP 293 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCch
Confidence 772 333 2233221 25789999999999 8888776655533
|
|
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.2 Score=43.29 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=46.2
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCC-Ccc-ceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSEN-EQE-EGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~-~~~-~~y~~t~~~~~l~ 111 (365)
|...|..+ +|+|+.|||+++|+ ++..+++.|+.|++.|+++.....-+ |.+ -.|++|..+....
T Consensus 16 il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f 81 (218)
T COG2345 16 ILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQF 81 (218)
T ss_pred HHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhc
Confidence 34445543 89999999999999 56999999999999999987531100 001 2499998776433
|
|
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.27 Score=31.74 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|+.+|++.+++ +...+.+.|+.|...|++.+..
T Consensus 13 ~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 13 GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 67999999999999 5788999999999999999864
|
|
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.41 Score=27.78 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.6
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCce
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFF 87 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l 87 (365)
|+|-+|||+.+|+ ...-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 578899999999999875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.47 Score=32.66 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|-|-|+.|||+.+|+. .+..+.+.|+.|...|++.+..
T Consensus 23 G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 3467999999999995 4789999999999999999874
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.6 Score=39.29 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=47.8
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++-.|... +++.|..+||+.+++ +...+.++++-|...|++++....+|...-.+.+|+.|+.+.
T Consensus 60 iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 60 ALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 44444321 267999999999999 578999999999999999997633322123478888887544
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.51 Score=39.73 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=39.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|+++|... +++|.++||+.+|+ ....+++.|..|...|++....
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence 3477777764 79999999999999 5789999999999999999543
|
|
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.29 Score=37.90 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=38.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCC--CCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQI--HPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~--~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|++.|...+.+.|+++|.+.+.- +..+..-++|.|+.|+..|++.+..
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 4466667654578999999999832 1115678999999999999999865
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=89.63 E-value=2 Score=39.11 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=71.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC----CC-CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA----IP-PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~~-~~D~i~~ 264 (365)
..++.+|||.-++.|.=+..++.... ...++..|. +.-+...+. ..++.+...|..+. .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 46788999999999999999999876 568899998 555554442 56777777776652 23 3899987
Q ss_pred c------cccccCCh-------h-------HHHHHHHHHHHhc----ccCCCCcEEEEEeeec
Q 017835 265 K------CVLHNWND-------E-------ECVKILKNCKKAI----AINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~------~vlh~~~~-------~-------~~~~~L~~i~~~L----~p~~~gG~lli~e~~~ 303 (365)
- .++..-++ . .-.++|+++.+.+ +| ||+++-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccH
Confidence 2 22221111 1 1247899999999 99 78777665444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.4 Score=33.33 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=40.6
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
|+..+.. ++.+..+|++.+++ +...+.+.|+.|.+.|++...... ....|++++
T Consensus 12 il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~~---~~~~~~~~~ 65 (78)
T cd00090 12 ILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD 65 (78)
T ss_pred HHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEec---cEEEEEeCC
Confidence 4444444 34999999999999 568899999999999999986421 135577775
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.1 Score=40.49 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=65.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---C--CCCce
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---A--IPPAD 260 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~--~~~~D 260 (365)
..+.++++=||+|-|.++....+. +.+ .+..+|. ..+++.-++ ..+|.+.-||-+. . ..+||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 356789999999999999888876 444 4566676 444544432 6799999998776 2 33699
Q ss_pred EEEeccccccCChhHH----HHHHHHHHHhcccCCCCcEEEEEe
Q 017835 261 AVLIKCVLHNWNDEEC----VKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~----~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+|+.-..= .--+.+ ..++.-+.++||| ||.+....
T Consensus 198 Vii~dssd--pvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSD--PVGPACALFQKPYFGLVLDALKG---DGVVCTQG 236 (337)
T ss_pred EEEEecCC--ccchHHHHHHHHHHHHHHHhhCC---CcEEEEec
Confidence 99873211 011112 3455667789998 78887764
|
|
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.15 Score=37.72 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++...--|.-.+++ +....+.+++.|+..|++..... +....|.+|+.+.-|.
T Consensus 29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~---~~~~~y~lT~KG~~fl 82 (95)
T COG3432 29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN---GRRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC---CccceEEEChhHHHHH
Confidence 377888889999999 68999999999999996666541 1123699999998554
|
|
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.37 Score=37.62 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=42.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
-.+.|++.|+.. +|.|+.|+|+..|- +..++.|-|+.|...|++..+.
T Consensus 65 ~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 65 RNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred hHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 356778888864 89999999999998 7899999999999999999885
|
|
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=89.23 E-value=1.4 Score=36.84 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc--CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 29 SFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL--QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 29 g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.-|...+++..+.+.= +..+.++||+++ ++ ...-++.-|+.|..+|++++.+ +|.|..|..
T Consensus 22 ~~W~~~~ir~l~~l~~--------~~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~------~g~y~~t~~ 84 (171)
T PF14394_consen 22 SSWYHPAIRELLPLMP--------FAPDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG------DGKYVQTDK 84 (171)
T ss_pred hhhHHHHHHHHhhcCC--------CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC------CCcEEEecc
Confidence 3455556666554432 233999999999 88 5788999999999999999997 689998876
Q ss_pred chh
Q 017835 107 SKL 109 (365)
Q Consensus 107 ~~~ 109 (365)
+-.
T Consensus 85 ~l~ 87 (171)
T PF14394_consen 85 SLT 87 (171)
T ss_pred eee
Confidence 543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.35 Score=46.80 Aligned_cols=55 Identities=27% Similarity=0.365 Sum_probs=45.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
++....++|+=||||.++.++++. -.+++|+++ |..++.|+. ..+++|++|-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 567799999999999999988876 468999998 888888774 5788999994444
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.68 Score=31.29 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+++.+..+||+.+++ .+..+..+++-|...|+++.+.
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 479999999999999 5788999999999999999874
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.63 E-value=5.3 Score=38.01 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=63.4
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCC----CCC---CC-C--CceEEEec
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGN----MFE---AI-P--PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d----~~~---~~-~--~~D~i~~~ 265 (365)
..++.+||.+|||. |..+..+++...-.++++++. ++..+.+++...+.++... +.+ .. + .+|+++-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999998 889999999875446888887 7777766642122332211 111 11 1 47887664
Q ss_pred c---------------ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 C---------------VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~---------------vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
- +|+...+. ...++++.+.++| +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 2 11111222 4578889999999 899988854
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.43 Score=35.26 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|+..|... +|=.+.-||..+++ +...+...++-|..+|++++..
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 34455555553 78899999999999 5789999999999999999985
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.1 Score=39.42 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHhhccccccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHH-hcc-------c--------CCCeEEEeC
Q 017835 189 ALIHKCKDVFEGL--NTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVA-DLK-------S--------NGNLKYVGG 250 (365)
Q Consensus 189 ~~~~~~~~~~~~~--~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~-~a~-------~--------~~~i~~~~~ 250 (365)
.+++.+. ++++ .+|||.=+|-|.-+.-++.. ++++++++..+++. ..+ . ..||+++.+
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4555565 4544 49999999999999988865 78999999844333 222 1 258999999
Q ss_pred CCCC--CC--CCceEEEecccc
Q 017835 251 NMFE--AI--PPADAVLIKCVL 268 (365)
Q Consensus 251 d~~~--~~--~~~D~i~~~~vl 268 (365)
|..+ .. ..+|+|++--.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S-
T ss_pred CHHHHHhhcCCCCCEEEECCCC
Confidence 9888 32 259999985544
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.91 Score=39.43 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=45.7
Q ss_pred ccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 47 IIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 47 ~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.+.. ...+|..+||+.+++ +...+.+.|+.|...|++++.... ....+++|+.++.+.
T Consensus 15 ~l~~-~~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~~---r~~~v~LTekG~~ll 72 (217)
T PRK14165 15 AVNN-TVKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIVP---RGQLITITEKGLDVL 72 (217)
T ss_pred ccCC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEcC---CceEEEECHHHHHHH
Confidence 4443 257999999999999 679999999999999999987521 135689998887444
|
|
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.52 Score=36.64 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=43.8
Q ss_pred HHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 37 KCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 37 ~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..++..|.+.+..+ |.+|..+++..+|+ +-..+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 345667777888775 89999999999999 5788999999999999999986
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=88.03 E-value=0.38 Score=36.66 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 355677777763 78999999999999 579999999999999999953
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.9 Score=37.52 Aligned_cols=94 Identities=19% Similarity=0.336 Sum_probs=65.8
Q ss_pred cccCCCeEEEecCCccHHHHHHHHHC----C-C-C---eEEEeechHHHHhcccCCCeEEEeCCCCCC---------CC-
Q 017835 197 VFEGLNTLVDVGGGTGTLASAIAKKF----P-H-I---ECTVFDQPHVVADLKSNGNLKYVGGNMFEA---------IP- 257 (365)
Q Consensus 197 ~~~~~~~iLDiG~G~G~~~~~l~~~~----p-~-~---~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~- 257 (365)
.+.+..+++|+=...|.++..|.++. + . - +++.+|+..|.. -+.|.-+.+|+.++ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 35778899999999999999988864 1 1 1 278889866655 46777788999873 22
Q ss_pred -CceEEEecc-----ccccCChh----HHHHHHHHHHHhcccCCCCcEEE
Q 017835 258 -PADAVLIKC-----VLHNWNDE----ECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 258 -~~D~i~~~~-----vlh~~~~~----~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.+|+|+|-. -+|+++.= -....|.-...+|+| ||.++
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 489999953 36766542 223344455568999 88765
|
|
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.48 Score=39.07 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=38.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|+++|... +.+|-++||+.+|+ +...++++|..|...|++...+
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 4466777643 78999999999999 5788999999999999997543
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=87.78 E-value=0.91 Score=36.28 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|++|++|||-+.|+ ..+.+.--|.++++.|-|.+..
T Consensus 4 ~Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~ 40 (155)
T PF07789_consen 4 EGAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVN 40 (155)
T ss_pred cCcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEec
Confidence 389999999999999 5789999999999999999986
|
The region in question is approximately 150 amino acid residues long. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=87.78 E-value=8.2 Score=29.70 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=54.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCC----CCceEEEeccccccCChh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAI----PPADAVLIKCVLHNWNDE 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~----~~~D~i~~~~vlh~~~~~ 274 (365)
....+|++||-|.=......+++. ++.++..|+.+- .+ ...+.++.-|+++|- .++|+|++-. +.+
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 344699999888775544444443 478899998333 33 378899999999963 3689988744 556
Q ss_pred HHHHHHHHHHHhcc
Q 017835 275 ECVKILKNCKKAIA 288 (365)
Q Consensus 275 ~~~~~L~~i~~~L~ 288 (365)
+....+-+++++++
T Consensus 82 El~~~ildva~aVg 95 (129)
T COG1255 82 ELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHhhC
Confidence 66666666777664
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.1 Score=33.49 Aligned_cols=44 Identities=9% Similarity=-0.025 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.++|..|||+.+|+ +...+.|.|+.|...|++...+. .+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-----~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-----MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-----CceeecC
Confidence 69999999999999 56899999999999999998742 4667665
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.3 Score=42.14 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCCeEEEeCCCCC---CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 242 NGNLKYVGGNMFE---AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 242 ~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.++|+++.+++.+ ..| ++|.+++.....-+++++..+.++++.+.++| ||+++.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 6899999999887 233 59999999999888999999999999999999 9999997765543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=87.10 E-value=2.8 Score=32.90 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=46.9
Q ss_pred cCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCCC----CceEEEeccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIP----PADAVLIKCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~----~~D~i~~~~vlh~~~~ 273 (365)
.+..+|++||-|.=.- +..|.+. ++.++..|..+. .+ ...+.++.-|+++|-. ++|+|++.. ++
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP 80 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----PP 80 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----CC
Confidence 3456999999888755 4445555 489999998332 22 3788899999999643 689998865 44
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
++.+.-+.++++.. |.-++|.-.
T Consensus 81 ~El~~~il~lA~~v-----~adlii~pL 103 (127)
T PF03686_consen 81 PELQPPILELAKKV-----GADLIIRPL 103 (127)
T ss_dssp TTSHHHHHHHHHHH-----T-EEEEE-B
T ss_pred hHHhHHHHHHHHHh-----CCCEEEECC
Confidence 45555666666665 355555443
|
; PDB: 2K4M_A. |
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=86.58 E-value=1.2 Score=31.42 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
-+.|-++||+.+|+ ....+.+.|+.|...|++...+ +.+....
T Consensus 27 ~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~-------~~i~I~d 69 (76)
T PF13545_consen 27 LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR-------GKIIILD 69 (76)
T ss_dssp EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET-------TEEEESS
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC-------CEEEECC
Confidence 48999999999999 5788999999999999999874 6666554
|
... |
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=86.13 E-value=0.89 Score=32.29 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=36.4
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 46 DIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 46 ~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|.|... +-.++.+||.++++ +++.++.+|..|+.+|-+++..
T Consensus 9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 445543 78999999999999 5799999999999999999874
|
|
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=86.07 E-value=1.3 Score=31.51 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec-cccCCCCccceEecCccch
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL-QKTSENEQEEGYILTSASK 108 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~-~~~~~~~~~~~y~~t~~~~ 108 (365)
+.|+...+||+.+++ ++.-++--+..|.++|+++. ... .+.|.+|..+-
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~-----s~GriPT~~aY 70 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP-----SGGRIPTDKAY 70 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC-----CCCCCcCHHHH
Confidence 479999999999999 56889999999999999985 332 47788876553
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.87 E-value=4.4 Score=36.34 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=94.1
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhcCCCCChHHHHHHccCc--cccc
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP--ILTK 132 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 132 (365)
.+.-.|++...+ +-+.+..+++.|...|++..+ ++...+|..++.++..- .+...-.+-+.- .---
T Consensus 35 ~d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~-------~g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeGrgi 102 (354)
T COG1568 35 NDFWKIVDYSDL---PLPLVASILEILEDEGIVKIE-------EGGVELTEKGEELAEEL--GIKKKYDYTCECCEGRGI 102 (354)
T ss_pred cchHhhhhhccC---CchHHHHHHHHHHhcCcEEEe-------cCcEeehhhhHHHHHHh--CCCccccccccCcCCccc
Confidence 377888888888 468899999999999999998 46699999998666422 111111111100 0000
Q ss_pred chhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCcc
Q 017835 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTG 212 (365)
Q Consensus 133 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G 212 (365)
.+....+.+++ |-++....|.....|.+....--..... +.-.+..+.-.++.|+=+| ---
T Consensus 103 ~l~~f~dll~k-----------------f~eiaK~RP~p~~~yDQgfvTpEttv~R-v~lm~~RGDL~gK~I~vvG-DDD 163 (354)
T COG1568 103 SLQAFKDLLEK-----------------FREIAKDRPEPLHQYDQGFVTPETTVSR-VALMYSRGDLEGKEIFVVG-DDD 163 (354)
T ss_pred cchhHHHHHHH-----------------HHHHHhcCCCcchhcccccccccceeee-eeeeccccCcCCCeEEEEc-Cch
Confidence 00112222221 1111112222222222221111000000 0001111223467899898 444
Q ss_pred HHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-----CceEEEe
Q 017835 213 TLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-----PADAVLI 264 (365)
Q Consensus 213 ~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-----~~D~i~~ 264 (365)
.++++++-..---++.++|+ ...+....+ .++++.+..|+.+|+| .||+++-
T Consensus 164 Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 164 LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec
Confidence 44554444332237778887 444544332 5679999999999988 3898865
|
|
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.83 E-value=0.43 Score=41.43 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+-....|||+.+|+ .++.+...++-|+..|++++.+ .++|..|+.+..+
T Consensus 24 p~v~q~eIA~~lgi---T~QaVsehiK~Lv~eG~i~~~g------R~~Y~iTkkG~e~ 72 (260)
T COG1497 24 PRVKQKEIAKKLGI---TLQAVSEHIKELVKEGLIEKEG------RGEYEITKKGAEW 72 (260)
T ss_pred CCCCHHHHHHHcCC---CHHHHHHHHHHHHhccceeecC------CeeEEEehhHHHH
Confidence 56899999999999 5799999999999999999976 5799999988633
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.44 E-value=0.76 Score=39.38 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+.|++|+|+++|+ ...-.+|.|.+|++.|+++.+
T Consensus 172 ~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 172 QELTAEELAQALGI---SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred CccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEE
Confidence 79999999999999 567899999999999999865
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.31 E-value=2.3 Score=39.60 Aligned_cols=64 Identities=28% Similarity=0.451 Sum_probs=41.7
Q ss_pred CchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC----C----CCeEEEeec-hHHHH
Q 017835 168 ETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF----P----HIECTVFDQ-PHVVA 237 (365)
Q Consensus 168 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 237 (365)
.|+..+.|.+..+.... .+...+. .+....++++|.|.|.++.-+++.. | .+++..++. ++..+
T Consensus 51 Apels~lFGella~~~~----~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 51 APELSQLFGELLAEQFL----QLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred chhHHHHHHHHHHHHHH----HHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 46667777766553321 1222233 3456789999999999988887753 4 568888887 44333
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.00 E-value=2.2 Score=38.10 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=26.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCC--------CCeEEEeec-hHHHH
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFP--------HIECTVFDQ-PHVVA 237 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~-~~~~~ 237 (365)
.-+|+|+|+|+|.++..+++... .++++.++. |...+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~ 64 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE 64 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH
Confidence 47999999999999999888643 358999998 44443
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.94 E-value=1.3 Score=42.69 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
+.|.|.++|++++++ +++.++++|+.|...|++.+.+ ++.|.+..
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~------~g~~~l~r 352 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE------RGQWVLAR 352 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC------CCceEecC
Confidence 369999999999999 5799999999999999999754 46677664
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.61 E-value=1.4 Score=41.95 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=55.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C-CCC--ceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A-IPP--ADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~~~--~D~i~~~~ 266 (365)
.+...+||||.|||.++...+++..+ .++.++. .+|.+.+++ +++|+++.---.+ . .|. +|+++-..
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 34578999999999999888887644 6899887 777777764 6777776543222 1 222 66665544
Q ss_pred ccccCChhHHHHHHHHHHHhc
Q 017835 267 VLHNWNDEECVKILKNCKKAI 287 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L 287 (365)
+.-.+--+-+..-++++++.|
T Consensus 144 fdtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhhccccchhHHHHHHHh
Confidence 333332233344566666554
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=84.52 E-value=16 Score=30.31 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=70.2
Q ss_pred EecCCccHHHHHHHHHCC-CC--eEEEeec-hHHHHhccc---------CCCeEEE-eCCCCC---CC--C--CceEEEe
Q 017835 206 DVGGGTGTLASAIAKKFP-HI--ECTVFDQ-PHVVADLKS---------NGNLKYV-GGNMFE---AI--P--PADAVLI 264 (365)
Q Consensus 206 DiG~G~G~~~~~l~~~~p-~~--~~~~~D~-~~~~~~a~~---------~~~i~~~-~~d~~~---~~--~--~~D~i~~ 264 (365)
=||=|.-.++..|++.+. .. -.|.+|- .+..+.-.. ...+++. ..|..+ .. . .||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 378888889999999977 43 4455665 333333221 3344433 335554 22 2 4999988
Q ss_pred cccccc-----------CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC
Q 017835 265 KCVLHN-----------WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 265 ~~vlh~-----------~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
++--.- ....-...+|+.+.+.|++ +|.|.|.=...+. ++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Cc
Confidence 654322 0122345778888899999 7888874322111 11
Q ss_pred HHHHHHHHHhcCCccceEEEc
Q 017835 334 EKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.=.+.++.+++||...+..+.
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred cccHHHHHHhcCCEEEEEecC
Confidence 112346667788888777665
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=84.25 E-value=2.2 Score=38.30 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhccc
Q 017835 214 LASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAI 289 (365)
Q Consensus 214 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p 289 (365)
++.+|.+..+..+++++|. +...+.+.+..-+.-...+ .+....+|+|+++- |.....++|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 3677888888999999998 7778777654444333332 22345689998864 445667888888888887
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=84.23 E-value=3.6 Score=33.22 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE 254 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~ 254 (365)
..-|+|+|=|+|..=-.|.+.+|+-++.++|..-.+.-....+.=.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 478999999999999999999999999999963222221113333467777766
|
|
| >PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle | Back alignment and domain information |
|---|
Probab=84.17 E-value=0.65 Score=32.59 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=35.2
Q ss_pred ccccccCCCCCCHHHHHHHc---CCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 45 PDIIHNHAKPMTLNQLLTTL---QIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 45 f~~L~~~~~~~t~~~la~~~---~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|..... +..++.++|+.+ +... ..+.++.++.+|.+.|++++.+
T Consensus 17 ~~~~~~--~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 17 FESSPD--KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp HHHCCC--TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred HHHCCC--CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 334443 789999999999 8721 2588999999999999999965
|
Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B. |
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.92 E-value=1.3 Score=35.72 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+++.|. .|+.|..|||+++|+ +...++-.|..|...|.+.+..
T Consensus 15 eILE~Lk--~G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLA--DGCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHh--cCCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 4566664 378999999999999 5788999999999999999986
|
|
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=1.3 Score=37.47 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=47.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.++..|... ++.|..+||+.+.+ +...+.++++-|...|++.+.....|...-...+|+.|+.+.
T Consensus 49 ~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 49 HILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 455555543 68999999999999 457799999999999999987532222123478888887544
|
|
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=83.71 E-value=1.3 Score=32.67 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=46.9
Q ss_pred HHHHcCcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHH----------HHHhcCce-eccccCCCCccceEecCc
Q 017835 38 CAIQLGIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMR----------ILVHSGFF-ALQKTSENEQEEGYILTS 105 (365)
Q Consensus 38 ~a~~lglf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~----------~L~~~g~l-~~~~~~~~~~~~~y~~t~ 105 (365)
.-++..|+..|... ..+.++.|||..+++ ++.++..-|+ .|+.+|++ .+.. .++ ...|++|+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~--~~g-~k~Y~lT~ 81 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEE--KGG-FKYYRLTE 81 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeee--cCC-eeEEEeCh
Confidence 33556666666654 368999999999999 5677777775 48999999 3332 111 34799999
Q ss_pred cchhh
Q 017835 106 ASKLL 110 (365)
Q Consensus 106 ~~~~l 110 (365)
.+..+
T Consensus 82 ~G~~~ 86 (90)
T PF07381_consen 82 KGKRI 86 (90)
T ss_pred hhhhH
Confidence 87644
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=83.39 E-value=1.2 Score=34.26 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+..++..|... ++.+..+||+.+++ +...+.++++-|...|++.+....+|...-.+.+|+.++.+.
T Consensus 24 q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 24 QYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 44455555542 34444999999999 679999999999999999997643222123588898887444
|
|
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=82.92 E-value=2.3 Score=37.89 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=45.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
.++-.|-.. |+.|+.||++..|+ +...++.+|+.|...|+++.... .+..|+.-+-...
T Consensus 20 ~vY~aLl~~-g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~g----~P~~y~av~p~~~ 78 (247)
T COG1378 20 KVYLALLCL-GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIEG----RPKKYRAVPPEEL 78 (247)
T ss_pred HHHHHHHHh-CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeCC----CCceEEeCCHHHH
Confidence 334444432 79999999999999 47889999999999999999752 2677887765543
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.1 Score=38.31 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeech
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-----PHIECTVFDQP 233 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~~ 233 (365)
+.+...++|+|||.|.++..+.... +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4677899999999999999999988 56789999973
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=82.49 E-value=9.8 Score=29.92 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCC
Q 017835 277 VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLG 356 (365)
Q Consensus 277 ~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 356 (365)
.++|+++++.++| ||++.-.. ....+++.|.++||.+.+....++
T Consensus 70 ~e~~~~l~~~~~~---~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~ 114 (124)
T PF05430_consen 70 EELFKKLARLSKP---GGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGR 114 (124)
T ss_dssp HHHHHHHHHHEEE---EEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STT
T ss_pred HHHHHHHHHHhCC---CcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCC
Confidence 4689999999999 66554311 123468889999999877776666
Q ss_pred ceeEEEEe
Q 017835 357 VRSLIEVY 364 (365)
Q Consensus 357 ~~~vi~~~ 364 (365)
-.-++.+.
T Consensus 115 Kr~~~~a~ 122 (124)
T PF05430_consen 115 KREMLRAV 122 (124)
T ss_dssp SSEEEEEE
T ss_pred cchheEEE
Confidence 55555554
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=82.37 E-value=4.8 Score=37.29 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=72.5
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEE-Eeec-hHHHHhccc-CCCeEEEeCCCCC----CCCCceEEEeccccccCC----
Q 017835 204 LVDVGGGTGTLASAIAKKFPHIECT-VFDQ-PHVVADLKS-NGNLKYVGGNMFE----AIPPADAVLIKCVLHNWN---- 272 (365)
Q Consensus 204 iLDiG~G~G~~~~~l~~~~p~~~~~-~~D~-~~~~~~a~~-~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~~~---- 272 (365)
|+|+=||.|.+...+.+. +.+++ .+|. +..++..+. ... .+..+|+.+ ..++.|+++...-+..++
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999999876 45554 5777 555554443 222 445677776 245789998876655444
Q ss_pred ----hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 273 ----DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 273 ----~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
++..-.++.+..++++-. .-+++++|.+..-.. ........+|.+.|++.||.+
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~--~P~~~v~ENV~~l~~--------------------~~~~~~~~~i~~~l~~~GY~v 135 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEK--KPKFFLLENVKGLVS--------------------HDKGRTFKVIIETLEELGYKV 135 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhc--CCCEEEeeccHHHHh--------------------cccchHHHHHHHHHHhCCCEE
Confidence 122234555555554321 126777776542110 011124577888889999986
Q ss_pred ce
Q 017835 349 YK 350 (365)
Q Consensus 349 ~~ 350 (365)
..
T Consensus 136 ~~ 137 (315)
T TIGR00675 136 YY 137 (315)
T ss_pred EE
Confidence 43
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=82.28 E-value=1.1 Score=43.61 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=54.3
Q ss_pred HHHcCcccccccCCCC-CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch-hhhcCCC
Q 017835 39 AIQLGIPDIIHNHAKP-MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK-LLLKDHP 115 (365)
Q Consensus 39 a~~lglf~~L~~~~~~-~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 115 (365)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.++ ++..+.|
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK----RETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 4566677777753 44 899999999999 678999999999999999886532 57799999998 5555554
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=82.27 E-value=1.1 Score=44.21 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=49.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
..|+..|... ++.|..+||+.+++ +...+.++++-|.+.|+++..... ...|.+|+.++.+..
T Consensus 9 ~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~~----~~~i~LTeeG~~~~~ 71 (489)
T PRK04172 9 KKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEERV----EEVYVLTEEGKKYAE 71 (489)
T ss_pred HHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEeee----EEEEEECHHHHHHHH
Confidence 3444555543 68999999999999 679999999999999999987421 356999999985443
|
|
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=82.18 E-value=2.6 Score=28.70 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHHcCcccccccCCCCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 35 SLKCAIQLGIPDIIHNHAKPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 35 ~L~~a~~lglf~~L~~~~~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|...+..|-+ .. |..+ |..+||+.+++ +..-+++-|+.|.+.|+++...
T Consensus 8 ~l~~~I~~g~~---~~-g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 8 QLRQAILSGRL---PP-GDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp HHHHHHHTTSS----T-TSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHcCCC---CC-CCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 34444444444 22 3578 99999999999 5788999999999999999875
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.16 E-value=7.7 Score=34.08 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=64.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-----hHHHHhcccCCCeEEEeCCCCCCCC------CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-----PHVVADLKSNGNLKYVGGNMFEAIP------PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~~i~~~~~d~~~~~~------~~D~i~~~ 265 (365)
++++.+||-+|.++|.....+... .|+--+..++. -..+..|++..+|--+..|...|.. -.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 688999999999999987777664 45555555554 2455666666777777778776643 2565544
Q ss_pred cccccCChhHHHHHHH-HHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEECVKILK-NCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~-~i~~~L~p~~~gG~lli~e~ 301 (365)
+.+.++...++. ++.-.|++ ||.++|.-.
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk~---gGhfvisik 262 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLKN---GGHFVISIK 262 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhcc---CCeEEEEEe
Confidence 333333344444 78888998 888877543
|
|
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=82.04 E-value=0.89 Score=32.25 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=39.7
Q ss_pred HcCcccccccCC-CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHA-KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~-~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..+++.|+.+. .+.+..+|+..+|. |++.+-..++.|...|++.+..
T Consensus 4 ~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 4 QYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred HHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 445566666432 68999999999998 7899999999999999999874
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >COG2512 Predicted membrane-associated trancriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.56 E-value=0.83 Score=40.83 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=40.7
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT 92 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~ 92 (365)
..+.+.|.+.||-.+-+||.+++|+ +..-+.|+|+-|..+|++++.+.
T Consensus 198 ~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 198 KEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence 4456666666677999999999999 46889999999999999999873
|
|
| >COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription] | Back alignment and domain information |
|---|
Probab=81.52 E-value=3.7 Score=33.34 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=57.2
Q ss_pred HHHhHHHHHHHHHHHHcCc-------ccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCcc
Q 017835 26 NIFSFVNSMSLKCAIQLGI-------PDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQE 98 (365)
Q Consensus 26 ~~~g~~~~~~L~~a~~lgl-------f~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 98 (365)
.+++-|...|+.++.+.++ +-.+.-.+.|+++.+|+..++.. |...+..-||-|...|+++..+. |.+
T Consensus 63 ~Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~---gke 137 (199)
T COG5631 63 EAFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGS---GKE 137 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCC---Cce
Confidence 4567777778888755443 22222225799999999999996 67788889999999999999863 213
Q ss_pred ceEecCccch
Q 017835 99 EGYILTSASK 108 (365)
Q Consensus 99 ~~y~~t~~~~ 108 (365)
-.|..|+.+.
T Consensus 138 vTy~vTa~G~ 147 (199)
T COG5631 138 VTYEVTALGH 147 (199)
T ss_pred EEEEEecchH
Confidence 4599888775
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=81.21 E-value=16 Score=27.82 Aligned_cols=81 Identities=27% Similarity=0.402 Sum_probs=47.7
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccCChhHHHH
Q 017835 209 GGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNWNDEECVK 278 (365)
Q Consensus 209 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~~~~~~~~ 278 (365)
||.|.++..+++.+ .+.+++++|. +..++.++. ..+.++.||..++ ...++.+++..- ++.....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45566766666643 3457999998 777777774 4488999999883 125777766321 3333333
Q ss_pred HHHHHHHhcccCCCCcEEEE
Q 017835 279 ILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 279 ~L~~i~~~L~p~~~gG~lli 298 (365)
+.. ..+.+.| ..++++
T Consensus 79 ~~~-~~r~~~~---~~~ii~ 94 (116)
T PF02254_consen 79 IAL-LARELNP---DIRIIA 94 (116)
T ss_dssp HHH-HHHHHTT---TSEEEE
T ss_pred HHH-HHHHHCC---CCeEEE
Confidence 333 3444555 455554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.13 E-value=15 Score=36.46 Aligned_cols=95 Identities=14% Similarity=0.225 Sum_probs=60.5
Q ss_pred cCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCC--------------CC-------
Q 017835 199 EGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMF--------------EA------- 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~--------------~~------- 255 (365)
.++.+|+=+|||.-.+ +...++.. +++++++|. ++..+.+++. ..++...|.. .+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4678999999998655 55556555 568999998 8888887752 2222111110 01
Q ss_pred -----CCCceEEEeccccccCChhHHHHH-HHHHHHhcccCCCCcEEEEEee
Q 017835 256 -----IPPADAVLIKCVLHNWNDEECVKI-LKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 256 -----~~~~D~i~~~~vlh~~~~~~~~~~-L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..++|+++-.--. +......+ .++..+.+|| ||+++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCC---CCEEEEEcc
Confidence 1358998876543 22112334 5899999999 898777654
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.84 E-value=5.5 Score=38.38 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC--eEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CCC---CceEEEe
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHI--ECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AIP---PADAVLI 264 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~~---~~D~i~~ 264 (365)
...+.|+|.|.|.-.-.+...+++. .++.+|. ..|...... ..++.+...-+.. |.+ .||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 4678888888776555555555443 4677887 445444432 1122222212222 333 3999999
Q ss_pred ccccccCChh-HHHHHHHHHHH-hcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDE-ECVKILKNCKK-AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~-~~~~~L~~i~~-~L~p~~~gG~lli~e~~~ 303 (365)
++++|++... ....+.++.++ ..++ |+.++++|.-.
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~ 318 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGT 318 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCC
Confidence 9999998643 33455555554 5677 88999998543
|
|
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=80.56 E-value=1.6 Score=36.18 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL 89 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~ 89 (365)
.++..|++.|.. ++..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 14 ~~D~~IL~~Lq~-d~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 14 RIDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHhcc-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEE
Confidence 467888999987 489999999999999 57889999999999999985
|
|
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=80.34 E-value=2.1 Score=33.14 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+.|++|||+.+.+ .+++++.+|+.|.+.|+++...
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 5799999999999999999974
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.18 E-value=10 Score=34.84 Aligned_cols=84 Identities=19% Similarity=0.074 Sum_probs=47.5
Q ss_pred CCeEEEecCCcc--HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHH
Q 017835 201 LNTLVDVGGGTG--TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECV 277 (365)
Q Consensus 201 ~~~iLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~ 277 (365)
..+|.=||+|.- .++..+.+.....+++++|. +...+.+++..-......+..+...++|+|+++-. .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 357888998863 33344444432247889998 66666555322111111122112346899888653 33345
Q ss_pred HHHHHHHHhccc
Q 017835 278 KILKNCKKAIAI 289 (365)
Q Consensus 278 ~~L~~i~~~L~p 289 (365)
.+++++...++|
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 677788888887
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=80.02 E-value=2.3 Score=27.79 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=26.9
Q ss_pred CHHHHHHHcCCCCCCcchHHHHHHHHHhcCce
Q 017835 56 TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFF 87 (365)
Q Consensus 56 t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l 87 (365)
|.+.||+.+|+ ..+-+.+.++.|...|++
T Consensus 27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 89999999999 578899999999999985
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 365 | ||||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 4e-73 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 1e-72 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 6e-69 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 7e-69 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 9e-69 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-67 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-29 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 2e-22 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 3e-20 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 4e-19 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-15 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 9e-09 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 1e-05 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 2e-05 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 2e-05 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 1e-04 |
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 452 bits (1165), Expect = e-160
Identities = 165/359 (45%), Positives = 233/359 (64%), Gaps = 10/359 (2%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
EL +Q H++ ++++FV+SM+LK A++LGI D IHNH KPMTL++L ++L++HP+K
Sbjct: 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVN 63
Query: 73 CVYHLMRILVHSGFFALQKTS----ENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP 128
++ +R+L H+GFFA + E+E Y LT SKLL+ P L+ + L P
Sbjct: 64 ILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHP 123
Query: 129 ILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHF--FNEGMASDTRLT 186
W W D + T F G +FWD+ +++ + F + MASD+R+
Sbjct: 124 SSLDMWSSSKKWFNEDKEQ---TLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180
Query: 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLK 246
L + K VFEGL +LVDVGGGTG + I + FPH++CTVFDQP VV +L N NL
Sbjct: 181 KLVLQ-ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLN 239
Query: 247 YVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306
+VGG+MF++IP ADAVL+K VLH+WNDE+ +KILKN K+AI+ GK GKVIIIDI ++
Sbjct: 240 FVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDET 299
Query: 307 KADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
D TE QL D++M+ + G+ER ++EW KL ++AGFS YKIT + G +SLIEVYP
Sbjct: 300 SDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 449 bits (1156), Expect = e-159
Identities = 164/357 (45%), Positives = 240/357 (67%), Gaps = 10/357 (2%)
Query: 9 NDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHP 68
N E+ ++QA ++ +I++F++SMSLK A+++ IP+II NH KP++L+ L++ LQ+
Sbjct: 6 NGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPS 65
Query: 69 TKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDP 128
+K V LMR L H+GFF + ++EE Y LT AS+LL++ L LAP + +LDP
Sbjct: 66 SKIGNVRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRGSDLCLAPMVECVLDP 121
Query: 129 ILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSS 188
L+ +H++ WI +D T F + G FWD+ + N FN+ MASD++L +
Sbjct: 122 TLSGSYHELKKWIYEED----LTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYV 248
AL C VF+GL ++VDVGGGTGT A I + FP ++C VFD+P VV +L + NL YV
Sbjct: 178 ALRD-CDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYV 236
Query: 249 GGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA 308
GG+MF +IP ADAVL+K +LHNW D++C++ILK CK+A+ +GK GKV IID+ ++ +K
Sbjct: 237 GGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD 296
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
+ + T+ +L MD+ M L G+ERNE+EW KLF EAGF YKI+ + G SLIE+YP
Sbjct: 297 ENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 430 bits (1108), Expect = e-152
Identities = 81/370 (21%), Positives = 146/370 (39%), Gaps = 31/370 (8%)
Query: 1 MDLTKGKNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQL 60
M + + + LQS ++ + + +L+ A +G+ D + + P T +L
Sbjct: 4 MQRQRPPSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAEL 61
Query: 61 LTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAP 120
+ ++R+L E + + LT L D P+
Sbjct: 62 AAATGTDA---DALRRVLRLLAVRDVVR-------ESDGRFALTDKGAALRSDSPVPARA 111
Query: 121 FLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMA 180
+L D + H+V++ + + FA G + Y + + + EGM
Sbjct: 112 GILMFTDTMFWTMSHRVASALGPER-----PAFADIFGSSLDAYFDGDAEVEALYYEGME 166
Query: 181 SDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLK 240
+ + L F T+ DVGGG G + ++ P ++ + D+ VVA +
Sbjct: 167 TVSAAEHLILARAG--DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHR 224
Query: 241 SN-----GNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGK 295
+ G K V G+ +P AD ++K +LHNW DE+ V+IL NC++ + + G+
Sbjct: 225 LDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAH---GR 281
Query: 296 VIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL 355
V++ID + MD +M+ G+ER E LF AG ++
Sbjct: 282 VLVIDAVVPEGNDA----HQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTS 337
Query: 356 GVRSLIEVYP 365
V S+ P
Sbjct: 338 SVMSIAVGVP 347
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 416 bits (1071), Expect = e-146
Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 18/363 (4%)
Query: 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKP---MTLNQLLTTLQIHP 68
+ + V L AI L + +II P M+ +++ + L
Sbjct: 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPAST 76
Query: 69 TKTQC---VYHLMRILVHSGFFA--LQKTSENEQEEGYILTSASKLLLKDHPL-SLAPFL 122
+ + ++R+L + + E Y L+ K L+ D LA F
Sbjct: 77 QHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFT 136
Query: 123 LAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASD 182
+ P L + W + ++D F HG+ +++ ++ ++N FN+ M
Sbjct: 137 TFLCYPALLQVWMNFKEAVVDED----IDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 192
Query: 183 TRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN 242
++ FEG++TLVDVGGG+G I K+P I+ FD P V+ +
Sbjct: 193 CATEMKRMLE-IYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 251
Query: 243 GNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302
+++VGG+MF ++P DA+++K V HNW+DE+C++ L NC KA+ GKVII++
Sbjct: 252 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVEFI 308
Query: 303 MESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD-VLGVRSLI 361
+ E + ++ +D LM + V G ER EK++ KL +GFS +++ ++
Sbjct: 309 LPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 368
Query: 362 EVY 364
E Y
Sbjct: 369 EFY 371
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 413 bits (1062), Expect = e-144
Identities = 110/360 (30%), Positives = 180/360 (50%), Gaps = 17/360 (4%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKP---MTLNQLLTTLQI-HP 68
++ + V M+LK AI+L + +I+ P ++ ++ L +P
Sbjct: 15 HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNP 74
Query: 69 TKTQCVYHLMRILVHSGFFA--LQKTSENEQEEGYILTSASKLLLKDHP-LSLAPFLLAM 125
+ ++R+L L++ + E Y L K L K+ +SLAPFLL
Sbjct: 75 EAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLA 134
Query: 126 LDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRL 185
D +L +PW + I F +GMN +DY + R+N FN+GM+S++ +
Sbjct: 135 TDKVLLEPWFYLKDAILEGG-----IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTI 189
Query: 186 TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNL 245
T ++ + FEGL T+VDVGGGTG +AS I K+P I FD PHV+ D + +
Sbjct: 190 TMKKILEMY-NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGV 248
Query: 246 KYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305
+++GG+MF+ +P DA+ IK + H+W+DE C+K+LKNC A+ + GKVI+ + +
Sbjct: 249 EHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDH---GKVIVAEYILPP 305
Query: 306 EKADYKTTETQLFMDMLMMVL-VKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364
T+ + D LM+ G+ER EKE+ L +GF +K+ ++E
Sbjct: 306 SPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFL 365
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 413 bits (1063), Expect = e-144
Identities = 85/362 (23%), Positives = 163/362 (45%), Gaps = 34/362 (9%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
+ ++ V + + + ++ A++LG+P+++ P T L H
Sbjct: 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEG--PRTATALAEATGAHEQT-- 87
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTK 132
+ L+R+L G F + ++ + + S +LL D +A P +
Sbjct: 88 -LRRLLRLLATVGVF-----DDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWR 141
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
W Q++ ++ + +F + +G +FW + + FN M S + + +
Sbjct: 142 AWEQLTHSVRTGE-----ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAA 196
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------GNL 245
F G T VD+GGG G+L +A+ FP + T+ ++P V + +
Sbjct: 197 AY--DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRC 254
Query: 246 KYVGGNMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304
+ + G+ FE IP AD LIK VLH+W+D++ V+IL+ A+ ++++ID ++
Sbjct: 255 EILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAM---KPDSRLLVIDNLID 311
Query: 305 SEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEV 363
A + LF+D+L++VLV G ER+E E+A L ++G + G ++E+
Sbjct: 312 ERPA-----ASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEI 366
Query: 364 YP 365
Sbjct: 367 RR 368
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 401 bits (1033), Expect = e-140
Identities = 100/364 (27%), Positives = 171/364 (46%), Gaps = 16/364 (4%)
Query: 8 NNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIH-NHAKPMTLNQLLTTL-- 64
D + + S V M+LK AI+LG+ +I+ K +T ++ L
Sbjct: 9 AADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPS 68
Query: 65 QIHPTKTQCVYHLMRILVHSGFFA--LQKTSENEQEEGYILTSASKLLLKDHP-LSLAPF 121
+P V ++R+L +++ + Y K L + +S+A
Sbjct: 69 AANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAAL 128
Query: 122 LLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMAS 181
L D +L + W+ + + + F +GM+ ++Y + R N FNEGM +
Sbjct: 129 ALMNQDKVLMESWYYLKDAVLDGG-----IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKN 183
Query: 182 DTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS 241
+ + + L+ + FEGL TLVDVGGG G +AIA +P I+ FD PHV+++
Sbjct: 184 HSIIITKKLL-ELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ 242
Query: 242 NGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301
+ +VGG+MF+ +P D +L+K +LH+W+D+ C +LKNC A+ GKV+++
Sbjct: 243 FPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDAL---PAHGKVVLVQC 299
Query: 302 KMESEKADYKTTETQLFMDMLMMVL-VKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSL 360
+ +++ +DM+M+ G ER E+E+ L AGF+ K T +
Sbjct: 300 ILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWA 359
Query: 361 IEVY 364
IE
Sbjct: 360 IEFT 363
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 389 bits (1002), Expect = e-135
Identities = 82/368 (22%), Positives = 143/368 (38%), Gaps = 40/368 (10%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
+ + S M ++ A L + D I T+ L P +
Sbjct: 13 ARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAG--ARTVKALAARTDTRP---E 67
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEG-YILTSASKLLLKDHPLSLAPFL-LAMLDPIL 130
+ L+R LV G E G ++ T +LL DHP + + L
Sbjct: 68 ALLRLIRHLVAIGLLE-------EDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARA 120
Query: 131 TKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSAL 190
+ ++ I+ T+ +G F++ L F+ +A D + A
Sbjct: 121 DISFTRLPDAIRTGR-----PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAP 175
Query: 191 IHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------G 243
+ + ++DVGGG G A+AIA++ PH+ TV + V +S
Sbjct: 176 AAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSD 233
Query: 244 NLKYVGGNMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302
+ V G+ FE +P ADA+++ VL NW D + V+IL C +A+ G+++I +
Sbjct: 234 RVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE---PGGRILIHERD 290
Query: 303 MESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLG-----V 357
E + E +D+ M+V + G R ++W L AG ++ +
Sbjct: 291 DLHENSF---NEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYD 347
Query: 358 RSLIEVYP 365
SL+ + P
Sbjct: 348 LSLLVLAP 355
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 388 bits (999), Expect = e-135
Identities = 71/363 (19%), Positives = 142/363 (39%), Gaps = 39/363 (10%)
Query: 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKT 71
+++ L + ++ + S + A +LG+ D+I + + L +
Sbjct: 1 MNNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIESG--IDSDETLAAAVGSDA--- 55
Query: 72 QCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILT 131
+ ++ LMR+LV F + + +GY T S LL +D S +L
Sbjct: 56 ERIHRLMRLLVAFEIF------QGDTRDGYANTPTSHLL-RDVEGSFRDMVL-FYGEEFH 107
Query: 132 KPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALI 191
W + + F L G +F+ Y R F M + S+
Sbjct: 108 AAWTPACEALLSGT-----PGFELAFGEDFYSYLKRCPDAGRRFLLAMKA-----SNLAF 157
Query: 192 HKCKDVFE-GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------G 243
H+ + + + VDVGGG+G L AI + P + D+ + + N
Sbjct: 158 HEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGE 217
Query: 244 NLKYVGGNMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302
+ VGG+M + +P D L+ ++ + ++ +++L NC++A+ G+V++I+
Sbjct: 218 RVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAM---AGDGRVVVIERT 274
Query: 303 MESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIE 362
+ + + + D+ + + G R +E L GF+ +I D+ +I
Sbjct: 275 ISASEPS----PMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIV 330
Query: 363 VYP 365
Sbjct: 331 AAR 333
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 387 bits (995), Expect = e-135
Identities = 78/358 (21%), Positives = 139/358 (38%), Gaps = 40/358 (11%)
Query: 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHL 77
++ + M+++ A L + D I T ++ + H + L
Sbjct: 4 RAAHIGLRALADLATPMAVRVAATLRVADHIAAG--HRTAAEIASAAGAHA---DSLDRL 58
Query: 78 MRILVHSGFFALQKTSENEQEEG-YILTSASKLLLKDHPLSLAPFLLAMLDPILT-KPWH 135
+R LV G F +G Y LT + L DH +L +
Sbjct: 59 LRHLVAVGLFT-------RDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFV 111
Query: 136 QVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCK 195
+++ I+ + + +G +FW+ + L+ F+ M+ L + + K
Sbjct: 112 ELAHSIRTGQ-----PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD 166
Query: 196 DVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------GNLKYV 248
+ L +VDVGGG+G L SA+ + TV D + G + V
Sbjct: 167 --WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVV 224
Query: 249 GGNMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307
G+ F+ +P A ++ VLH+W+D V IL+ C +A G G V++I+ E
Sbjct: 225 VGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAA---GSGGVVLVIEAVAGDEH 281
Query: 308 ADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365
A MD+ M+ G+ER+ E +L +AG + + S++E+
Sbjct: 282 A-------GTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI-SYVSIVEMTA 331
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-134
Identities = 78/366 (21%), Positives = 134/366 (36%), Gaps = 35/366 (9%)
Query: 14 DELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQC 73
+ Q + N+ + V M+L+ A L + D + A TL L HP Q
Sbjct: 11 EPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHP---QA 65
Query: 74 VYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPI-LTK 132
+ L+R L G +Q T LL HP +L
Sbjct: 66 LSRLVRHLTVVGVL----EGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADL 121
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
+ + ++ +A +G FW+ + L F+ M+ D L A
Sbjct: 122 AFTGLLDVVRTGR-----PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPAD 176
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------GNL 245
+ + ++DVGGG G + +AIA + PH+ T+ + + +
Sbjct: 177 AYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV 234
Query: 246 KYVGGNMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304
G+ F+ +P AD VL+ VL NW+DE+ + IL+ C +A+ G+++++D
Sbjct: 235 TVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADV 291
Query: 305 SEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVR-----S 359
D +D+ M+ + G R E L AG + S
Sbjct: 292 EG--DGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFS 349
Query: 360 LIEVYP 365
++E
Sbjct: 350 ILEFTA 355
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 359 bits (924), Expect = e-124
Identities = 58/362 (16%), Positives = 130/362 (35%), Gaps = 35/362 (9%)
Query: 13 SDELLQSQAHVWNNIFS-FVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKT 71
+++LL +F + +K AI+L + + P L L P +
Sbjct: 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRL 81
Query: 72 QCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILT 131
L+ L ++ + LT + + P + +
Sbjct: 82 ---EMLLETLRQMRVIN-------LEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMA- 130
Query: 132 KPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALI 191
+ + A + Y N +F E S+ + L+
Sbjct: 131 --FLADDFY---MGLSQAVRGQK--NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLL 183
Query: 192 HKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------GN 244
+ K +G+ ++DVGGG G +++A+ K FP ++ T+ + P + + N
Sbjct: 184 EEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADR 241
Query: 245 LKYVGGNMF-EAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303
++ + +++ E+ P ADAVL +L++ N++ + K A+ G+++I+D+ +
Sbjct: 242 MRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR---SGGRLLILDMVI 298
Query: 304 ESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEV 363
+ + + + M V + + + ++ G+ D + + V
Sbjct: 299 DDPENPNFDYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAV 357
Query: 364 YP 365
P
Sbjct: 358 KP 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = e-104
Identities = 69/354 (19%), Positives = 132/354 (37%), Gaps = 40/354 (11%)
Query: 19 SQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLM 78
S A +N + ++ S ++K A++L + I + L Q L
Sbjct: 6 SPALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGM---RMLC 60
Query: 79 RILVHSGFFALQKTSENEQEEGYILTSASKLLL-KDHPLSLAPFLLAMLDPILTKPWHQV 137
LV GF +Q EGY LTS S + L + + + +L P++T ++ +
Sbjct: 61 DYLVIIGFMT-------KQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDL 113
Query: 138 STWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDV 197
+ + T + + ++ V F + M+ + + +
Sbjct: 114 TAAVLKGG-----TAISSEGTL-SPEHPVWVQ-----FAKAMSPMMANPAQLIAQLVNEN 162
Query: 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------GNLKYVGG 250
++D+ G A+A+ P+ E D V+ K N + G
Sbjct: 163 KIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAG 222
Query: 251 NMFEAIPP--ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA 308
+ FE D VL+ LH+++ C ++L+ K A+A GKVI+ D S++
Sbjct: 223 SAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALA---VEGKVIVFDFIPNSDRI 279
Query: 309 DYKTTETQLFMDMLMMVLVK-GEERNEKEWAKLFFEAGFSDYKITDVLGVRSLI 361
T ++M+ G+ E+ +F AGFS ++ + + +
Sbjct: 280 ---TPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 296 bits (761), Expect = 4e-99
Identities = 54/361 (14%), Positives = 122/361 (33%), Gaps = 35/361 (9%)
Query: 17 LQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYH 76
++Q F V + ++ GI ++ + TL ++ +
Sbjct: 13 AEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAA---QV 69
Query: 77 LMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQ 136
L+ + G +E+ Y+L A LL D +A + + +
Sbjct: 70 LLEASLTIGTIL-------LEEDRYVLAKAGWFLLND---KMARVNMEFNHDVNYQGLFH 119
Query: 137 VSTWIQNDDDDDAATTFALPHGMNFWDYAVR-ETRLNHFFNEGMASDTRLTSSALIHKCK 195
+ + N ++ + ++ + + + +
Sbjct: 120 LEEALLNGR---PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF 176
Query: 196 DVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------GNLKYV 248
L+D+GG TG A+ + +E T+ D P + ++ +
Sbjct: 177 --SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGH 234
Query: 249 GGNMFEAIPP----ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304
G N+ + P DAV + L +++EE + IL ++I K KV I++ +
Sbjct: 235 GANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG---KDSKVYIMETLWD 291
Query: 305 SEKADY-KTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGV-RSLIE 362
++ + TQ+ + M + + + + AG +I D +G+ S+++
Sbjct: 292 RQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQ 351
Query: 363 V 363
Sbjct: 352 C 352
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = 2e-97
Identities = 57/364 (15%), Positives = 125/364 (34%), Gaps = 51/364 (14%)
Query: 14 DELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQC 73
L S + + S L A+ + D+ T ++ + + K
Sbjct: 19 KAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLT---QTGRTPAEVAASFGMVEGKA-- 73
Query: 74 VYHLMRILVHSGFFALQKTSENEQEEGYILTS-ASKLLLKDHPLSLAPFLLAMLDPILTK 132
L+ L G ++ + + T+ + L + P + +
Sbjct: 74 -AILLHALAALGLLT-------KEGDAFRNTALTERYLTTTSADYIGPIV--EHQYLQWD 123
Query: 133 PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIH 192
W ++ ++++ P +TR FN+ M ++ +
Sbjct: 124 NWPRLGEILRSEK----------PLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSE 173
Query: 193 KCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSN-------GNL 245
VF T++D+ GG GT + + ++ P + ++D P + G +
Sbjct: 174 LG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRV 231
Query: 246 KYVGGNMFEAIPP----ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301
++ N+ +A AD V++ LH ++ E +++ + + G ++I+ +
Sbjct: 232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK---PGGALLILTM 288
Query: 302 KMESEKADYKTTETQLFMDMLMMVLVK-GEERNEKEWAKLFFEAGFSD-----YKITDVL 355
M ++ T + MMV GE A + +AG + + T ++
Sbjct: 289 TMNDDRV---TPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLI 345
Query: 356 GVRS 359
G RS
Sbjct: 346 GQRS 349
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-12
Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 29/202 (14%)
Query: 158 GMNFWD--YAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLA 215
+ +W A L D + S L D G G G +
Sbjct: 53 ALEYWRTVPATVSGVLGGM---DHVHDVDIEGSRNFIASLPGHGTSRAL-DCGAGIGRIT 108
Query: 216 SAIAKKFPHIECTVFDQPHVV----ADLKSNGNLKYVGGNMFEAIPPA---DAVLIKCVL 268
+ K + H++ +L K++ +M A P D ++I+
Sbjct: 109 KNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTA 168
Query: 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK 328
D + VK K+C++A+ I + E
Sbjct: 169 IYLTDADFVKFFKHCQQAL----TPNGYIFFKENCSTGDRFLVDKEDSSLT--------- 215
Query: 329 GEERNEKEWAKLFFEAGFSDYK 350
R++ + +LF E+G K
Sbjct: 216 ---RSDIHYKRLFNESGVRVVK 234
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 3e-09
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 29/170 (17%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN------GNLKYVGGNMFEA 255
+++ G G G +AK P E T D P + + N N+K++ N +
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN-IFS 98
Query: 256 IPPA----DAVLIKCVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306
+P D + + VL + + K+LK G + +I+ S
Sbjct: 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLK----------PGGTITVIEGDHGSC 148
Query: 307 KADYKTTETQLFMDMLMMVL--VKGEERNEKEWAKLFFEAGFSDYKITDV 354
+ + + L+ V +KG ++ L E+GF ++
Sbjct: 149 YFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 4e-09
Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 26/167 (15%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQPHV---VAD--LKSNGNLKYVGGNMFEAIP 257
++D+G GTG L++ + +K+P T+ D +A + N +KY+ +
Sbjct: 47 DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY-SKYD 105
Query: 258 ---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE 314
D V+ +H+ DE+ ++ K + K + I + E A +
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSIL----KESGIFINADLVHGETAFIENLN 161
Query: 315 TQLFMDMLMMVLVKGEERNEK-------------EWAKLFFEAGFSD 348
++ + + EE + EAGF D
Sbjct: 162 KTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRD 208
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 7e-09
Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 30/169 (17%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-------GNLKYVGGNMFE 254
T +D+G G G L+ A+AK+ D H+ N ++ V G+
Sbjct: 46 TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD-VH 103
Query: 255 AIP----PADAVLIKCVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIKMES 305
IP AD ++ + + W D E +ILK GK I
Sbjct: 104 NIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILK----------SGGKTYIGGGFGNK 153
Query: 306 EKADYKTTE-TQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD 353
E D + E + D + N + + + E G S Y+I
Sbjct: 154 ELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIIL 202
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 37/168 (22%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVV------ADLKSNGNLKYVGGNMFEA 255
++DV G G +A+A A + FD ++ + + ++YV G+ E
Sbjct: 40 EVLDVATGGGHVANAFAPFVKKV--VAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQ 96
Query: 256 IPPA----DAVLIKCVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306
+P V + H++ + E ++LK K G+++++D
Sbjct: 97 MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLK----------KGGQLLLVDN----- 141
Query: 307 KADYKTTETQLFMDMLMMVLVKGEERN--EKEWAKLFFEAGFSDYKIT 352
+ + +F + + R + +W K+ EAGF ++
Sbjct: 142 -SAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELH 188
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 3e-08
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 37/168 (22%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN------GNLKYVGGNMFEA 255
++D+G G G A A + D +V S N+++ G E+
Sbjct: 24 RVLDIGAGAGHTALAFSPYVQEC--IGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ES 80
Query: 256 IP-PA---DAVLIKCVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306
+P P D + + H+++D E ++LK + G+ +++D E
Sbjct: 81 LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLK----------QDGRFLLVDH-YAPE 129
Query: 307 KADYKTTETQLFMDMLMMVLVKGEERN--EKEWAKLFFEAGFSDYKIT 352
F++ L + R EW +F + I
Sbjct: 130 DPVLDE-----FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-07
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 37/165 (22%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPA-- 259
V++G GTG A + K + + + + + G E +P
Sbjct: 50 RGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTA-ENLPLKDE 101
Query: 260 --DAVLIKCVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312
D L+ + +D +E +ILK K G +I+ + ES
Sbjct: 102 SFDFALMVTTICFVDDPERALKEAYRILK----------KGGYLIVGIVDRESFLGRE-- 149
Query: 313 TETQLFMDMLMMVLVKGEER--NEKEWAKLFFEAGFSDYKITDVL 355
+ + R + +E L +AGF ++K+ L
Sbjct: 150 -----YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL 189
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 29/153 (18%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFD-QPHVVADLKSNGNLKYVGGNMFEAIP---- 257
+VD G G G + + + C D + ++K V +
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKLYCI--DINVIALKEVKE--KFDSVITLS-DPKEIPDN 74
Query: 258 PADAVLIKCVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIKMESE----KA 308
D +L H+ +D E +ILK G+VIIID + E+
Sbjct: 75 SVDFILFANSFHDMDDKQHVISEVKRILK----------DDGRVIIIDWRKENTGIGPPL 124
Query: 309 DYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341
+ E V+ K + +
Sbjct: 125 SIRMDEKDYMGWFSNFVVEKRFNPTPYHFGLVL 157
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-06
Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 33/207 (15%)
Query: 158 GMNFWDYAVRETRLNHFFNEGMASDTRLTSSAL----IHKCKDVFEGLNTLVDVGGGTGT 213
+W + T G S + SS + G + +D G G G
Sbjct: 34 AKTYWK-QIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGR 92
Query: 214 LASAIAKKFPHIECTVFDQ-PHVVADLKSN------GNLKYVGGNMFEAIPPA---DAVL 263
+ + E + D + K+ Y + + P D +
Sbjct: 93 ITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIW 151
Query: 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM 323
I+ V+ + D+ + L+ CK ++ G ++I D + +D +
Sbjct: 152 IQWVIGHLTDQHLAEFLRRCKGSLR---PNGIIVIKDNMAQEGVILDD-------VDSSV 201
Query: 324 MVLVKGEERNEKEWAKLFFEAGFSDYK 350
R+ ++ AG S
Sbjct: 202 C-------RDLDVVRRIICSAGLSLLA 221
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 3e-06
Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 41/188 (21%)
Query: 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVA-DL------- 239
S L++ + + ++ + D G G G L + P + D
Sbjct: 11 SFLVNTVWKITKPVHIV-DYGCGYGYLGLVLMPLLP-------EGSKYTGIDSGETLLAE 62
Query: 240 ------KSNGNLKYVGGNMFEAIPPA---DAVLIKCVLHNWNDEECVKILKNCKKAIAIN 290
+ +++ G+ I D + L + E +L+ ++
Sbjct: 63 ARELFRLLPYDSEFLEGDA-TEIELNDKYDIAICHAFLLHMTTPE--TMLQKMIHSVKKG 119
Query: 291 GKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEK----------EWAKL 340
GK+I + S A Y + + + VL K E + + +
Sbjct: 120 ---GKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY 176
Query: 341 FFEAGFSD 348
E G +
Sbjct: 177 LSELGVKN 184
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 28/119 (23%)
Query: 203 TLVDVGGGTGTLASAIAKKF-PHIECTVFD-QPHVVADLKSN------GNLKYVGGNMFE 254
T++DVG G G ++K + D Q +V N++ +
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-N 98
Query: 255 AIP----PADAVLIKCVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIKME 304
IP D + + H ++ EE ++ K + IID K E
Sbjct: 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAK----------PFAYLAIIDWKKE 147
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 23/153 (15%), Positives = 46/153 (30%), Gaps = 14/153 (9%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PH--VVADLKSNGNLKYVGGNMFEAIPPA 259
+++ G GTG L + + + + ++A K G+ +
Sbjct: 48 NVLEFGVGTGNLTNKLLLAGRTV--YGIEPSREMRMIAKEKLPKEFSITEGDF-LSFEVP 104
Query: 260 ---DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQ 316
D ++ H+ D+E + + + GK++ D + A KT E
Sbjct: 105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG---GKIVFADTIFADQDAYDKTVEAA 161
Query: 317 LFMDMLMMVLVKGEER--NEKEWAKLFFEAGFS 347
+ E +F GF
Sbjct: 162 KQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 42/210 (20%)
Query: 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHK--CKDVFEGLNTLVDVGGGTGTLASA 217
WD F+N+ S + I + V + L DVG G G
Sbjct: 18 KKWD------SSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVL-DVGCGDGYGTYK 70
Query: 218 IAKKFPHIECTVFDQ-PHVVADLKSNG---NLKYVGGNMFEAIPPA----DAVLIKCVLH 269
+++ D ++ K G +L ++ G++ ++P +A++ L
Sbjct: 71 LSRTGYKA--VGVDISEVMIQKGKERGEGPDLSFIKGDL-SSLPFENEQFEAIMAINSLE 127
Query: 270 NWND-----EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM 324
+ E ++LK G I + ++ + L
Sbjct: 128 WTEEPLRALNEIKRVLK----------SDGYACIAILGPTAKPRENS-------YPRLYG 170
Query: 325 VLVKGEERNEKEWAKLFFEAGFSDYKITDV 354
V E+ +L E GF V
Sbjct: 171 KDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPA-- 259
+ D+G GTG + A+A + + + + + +++ G E +
Sbjct: 37 VIADIGAGTGGYSVALANQGLFV--YAVEPSIVMRQQAVVHPQVEWFTGYA-ENLALPDK 93
Query: 260 --DAVLIKCVLHNWND-----EECVKILK 281
D V+ +H+++ +E +I++
Sbjct: 94 SVDGVISILAIHHFSHLEKSFQEMQRIIR 122
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 48/182 (26%)
Query: 203 TLVDVGGGTGTLASAIAKKF-PHIECTVFD---------------QPHVVADLKSNGNLK 246
T++D+G GTG +K H + D S N++
Sbjct: 86 TVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVR 145
Query: 247 YVGGNMFEAIPPA----------DAVLIKCVLHNWND-----EECVKILKNCKKAIAING 291
++ G + E + A D V+ CV + + +E ++L+
Sbjct: 146 FLKGFI-ENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLR---------- 194
Query: 292 KAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351
G++ D+ + ++ + L+ + L L +++ +L EAGF D ++
Sbjct: 195 DGGELYFSDVYADRRLSEAAQQDPILYGECLGGAL------YLEDFRRLVAEAGFRDVRL 248
Query: 352 TD 353
Sbjct: 249 VS 250
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.85 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.82 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.77 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.75 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.75 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.75 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.74 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.74 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.72 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.72 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.72 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.71 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.71 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.7 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.7 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.7 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.7 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.7 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.69 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.69 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.68 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.68 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.68 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.68 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.68 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.67 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.67 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.66 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.66 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.66 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.66 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.65 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.65 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.64 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.64 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.63 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.63 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.62 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.61 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.61 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.6 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.6 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.6 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.59 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.56 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.56 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.55 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.55 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.55 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.55 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.54 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.52 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.51 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.51 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.5 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.49 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.49 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.49 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.49 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.49 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.49 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.47 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.47 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.46 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.44 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.43 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.43 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.42 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.41 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.41 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.4 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.39 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.39 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.39 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.37 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.37 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.36 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.35 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.34 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.34 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.34 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.34 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.34 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.33 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.33 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.33 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.33 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.32 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.32 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.31 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.31 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.31 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.31 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.31 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.31 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.31 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.29 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.29 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.28 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.27 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.27 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.26 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.26 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.25 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.25 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.23 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.23 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.23 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.22 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.22 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.21 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.21 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.21 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.21 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.21 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.2 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.18 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.18 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.17 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.17 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.17 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.16 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.16 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.16 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.16 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.15 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.15 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.15 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.14 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.14 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.14 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.13 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.13 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.12 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.12 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.12 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.11 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.11 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.1 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.1 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.09 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.09 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.09 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.08 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.08 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.07 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.07 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.07 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.06 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.06 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.04 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.04 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.04 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.03 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.02 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.02 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.02 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.02 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.02 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.01 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.01 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.01 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.01 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.0 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.99 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.99 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.98 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.98 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.97 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.96 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.96 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.96 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.96 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.96 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.94 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.94 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.94 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.93 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.93 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.93 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.92 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.92 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.92 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.91 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.9 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.89 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.86 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.86 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.85 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.82 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.81 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.78 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.77 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.75 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.73 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.73 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.73 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.72 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.71 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.66 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.64 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.63 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.59 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.58 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.58 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.58 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.53 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.52 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.49 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.48 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.48 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.48 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.45 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.45 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.43 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.41 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.4 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.38 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.37 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.36 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.33 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.33 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.33 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.31 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.31 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.29 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.27 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.27 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.26 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.17 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.11 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.11 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.1 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.1 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.03 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.0 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.0 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.99 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.98 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.97 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.94 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.92 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.92 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.77 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.63 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.61 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.59 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.58 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.56 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.55 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.55 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.51 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.37 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.34 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.29 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.21 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.1 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 97.01 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.76 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 96.73 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.59 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.56 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.51 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 96.44 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 96.2 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.19 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.18 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.17 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.09 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.08 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 96.07 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.03 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 95.99 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.98 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 95.94 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 95.84 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 95.82 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 95.78 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 95.76 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 95.73 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 95.65 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 95.65 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 95.6 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 95.59 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 95.57 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 95.56 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 95.56 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.54 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 95.53 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 95.51 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 95.51 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 95.49 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.49 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 95.44 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 95.29 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 95.25 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 95.24 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.07 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.04 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.04 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.02 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 95.01 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 94.99 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 94.95 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 94.91 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 94.9 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 94.89 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 94.84 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 94.84 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 94.69 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 94.59 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 94.57 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 94.56 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 94.48 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 94.45 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 94.4 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 94.33 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 94.21 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 94.17 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 94.15 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 94.13 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 94.11 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 94.09 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 94.07 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 94.04 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 94.03 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 94.03 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 93.95 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 93.93 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 93.88 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 93.88 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 93.86 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 93.84 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 93.84 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 93.83 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 93.77 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 93.69 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 93.6 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 93.57 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 93.56 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 93.48 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 93.42 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 93.35 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 93.3 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 93.29 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 93.27 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 93.27 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 93.26 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 93.23 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 93.16 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 93.15 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 93.12 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 93.11 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 93.08 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 93.03 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 93.01 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 92.92 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 92.88 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 92.84 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 92.76 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 92.76 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 92.76 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 92.73 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 92.64 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 92.63 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 92.58 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 92.54 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 92.49 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 92.36 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 92.11 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 92.04 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 91.91 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 91.6 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.53 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 91.46 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 91.42 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 91.38 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 91.25 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 91.08 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 91.06 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 91.01 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 90.91 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 90.52 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 90.06 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 89.94 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 89.78 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.57 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 89.55 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 89.52 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 89.44 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 89.36 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 89.11 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 89.04 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 89.0 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 89.0 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 88.98 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 88.7 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 88.55 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 88.43 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 88.36 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 88.32 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 88.31 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 88.24 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 87.95 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 87.92 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 87.82 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.77 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 87.23 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 87.22 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 87.17 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 86.9 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 86.79 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 86.67 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 86.47 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 86.18 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 85.84 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 85.71 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 85.63 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 85.62 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 85.58 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 85.52 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 85.29 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 85.19 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 84.96 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 84.44 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 84.43 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 84.36 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 84.07 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 84.02 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 83.93 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 83.89 | |
| 2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix | 83.79 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 83.49 | |
| 2pjp_A | 121 | Selenocysteine-specific elongation factor; SELB, p | 83.19 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 83.17 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 82.66 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 82.55 | |
| 2p8t_A | 200 | Hypothetical protein PH0730; pyrococcus horikoshii | 82.5 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 82.26 | |
| 1cf7_A | 76 | Protein (transcription factor E2F-4); E2F, winged- | 82.2 | |
| 2w57_A | 150 | Ferric uptake regulation protein; gene regulation, | 82.17 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 82.12 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 82.02 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 81.99 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 81.9 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 81.76 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 81.29 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 80.92 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 80.11 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=406.51 Aligned_cols=328 Identities=20% Similarity=0.344 Sum_probs=293.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
++.+.|.+++.||+.+++|++|++|||||.|.+.++|+|++|||+++|+ +++.++||||+|++.|++++... ++
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~--~~- 80 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR--GG- 80 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE--TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc--Cc-
Confidence 7788899999999999999999999999999865579999999999999 68999999999999999986531 11
Q ss_pred cceEecCccch-hhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccC---CChhHHHhhCchHHH
Q 017835 98 EEGYILTSASK-LLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHG---MNFWDYAVRETRLNH 173 (365)
Q Consensus 98 ~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~ 173 (365)
++.|++|+.++ ++.++++.++..++.+.. +..+..|.+|.+.+++++ +++...+| .++|+++.++++...
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-----~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-----NQYLETFGVPAEELFTAIYRSEGERL 154 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-----CCHHHHHSCCCSSHHHHHTSSHHHHH
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-----ChhHHhcCCChHHHHHHHhhCHHHHH
Confidence 46899999887 677888888998887763 456789999999999997 67777776 478999999999999
Q ss_pred HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc------CCCeEE
Q 017835 174 FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS------NGNLKY 247 (365)
Q Consensus 174 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~i~~ 247 (365)
.|.++|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||++
T Consensus 155 ~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~ 232 (353)
T 4a6d_A 155 QFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDF 232 (353)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceee
Confidence 9999999988777788888888 78889999999999999999999999999999999999998874 589999
Q ss_pred EeCCCCC-CCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc
Q 017835 248 VGGNMFE-AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL 326 (365)
Q Consensus 248 ~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 326 (365)
+.+|+++ +.|++|+|+++++||+|+|+++.++|++++++|+| ||+|+|+|.+.++....+ .....+|+.|+..
T Consensus 233 ~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~ 306 (353)
T 4a6d_A 233 QEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQ 306 (353)
T ss_dssp EESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHS
T ss_pred ecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHh
Confidence 9999998 46679999999999999999999999999999999 999999999998765443 3456789999988
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.+|++||.+||+++|+++||+++++++.++..++|+++|
T Consensus 307 ~~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 307 TEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp SSCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 999999999999999999999999999999999999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=392.03 Aligned_cols=345 Identities=29% Similarity=0.490 Sum_probs=299.3
Q ss_pred CchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCC-CCCCHHHHHHHcCC--CCCCcchHHHHHHHHHhcCcee
Q 017835 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHA-KPMTLNQLLTTLQI--HPTKTQCVYHLMRILVHSGFFA 88 (365)
Q Consensus 12 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~-~~~t~~~la~~~~~--~~~~~~~l~~lL~~L~~~g~l~ 88 (365)
...+..++...++++++|++.+++|++|+++|||+.|.+.+ +|+|++|||+++++ +|+++..++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 56678999999999999999999999999999999998743 69999999999997 6534459999999999999999
Q ss_pred ccccC-CCC-ccceEecCccchhhhcCC-CCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHH
Q 017835 89 LQKTS-ENE-QEEGYILTSASKLLLKDH-PLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYA 165 (365)
Q Consensus 89 ~~~~~-~~~-~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 165 (365)
++... +++ .++.|++|+.+++|..+. +.++.+++.+...+.++..|.+|.+++++|. ++|+..+|.++|+++
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-----~~~~~~~g~~~~~~~ 167 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-----IPFNKAYGMSAFEYH 167 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-----CHHHHHHSSCHHHHH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-----ChHHHhcCCCHHHHH
Confidence 86210 000 026899999999887654 5689998887666677899999999999987 899999999999999
Q ss_pred hhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCe
Q 017835 166 VRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNL 245 (365)
Q Consensus 166 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i 245 (365)
..+|+..+.|.+.|...+......+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++..++
T Consensus 168 ~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v 246 (364)
T 3p9c_A 168 GTDPRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGV 246 (364)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTE
T ss_pred HhCHHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCe
Confidence 999999999999999887766677777776 2567899999999999999999999999999999999999999888899
Q ss_pred EEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 246 KYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 246 ~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
+++.+|+++++|..|+|+++++||+|+++++.++|++++++|+| ||+|+|+|.+.++.............+++.|+.
T Consensus 247 ~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~ 323 (364)
T 3p9c_A 247 THVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA 323 (364)
T ss_dssp EEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh
Confidence 99999999987767999999999999999999999999999999 999999999987754332111233567887774
Q ss_pred -ccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 326 -LVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 326 -~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
..+++.||.++|+++|+++||+++++++.++..++||++|
T Consensus 324 ~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 324 HNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred cccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 4689999999999999999999999999999999999987
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-51 Score=383.08 Aligned_cols=345 Identities=31% Similarity=0.546 Sum_probs=294.7
Q ss_pred CchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccC---CCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCce
Q 017835 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNH---AKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFF 87 (365)
Q Consensus 12 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~---~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l 87 (365)
...+..++...+++++.|++.+++|++|+++|||+.|.+. ++|+|++|||++++ .+|.+++.++||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 4446788999999999999999999999999999999862 24799999999998 4543456999999999999999
Q ss_pred eccccC-CCCc-cceEecCccchhhhcC-CCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHH
Q 017835 88 ALQKTS-ENEQ-EEGYILTSASKLLLKD-HPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDY 164 (365)
Q Consensus 88 ~~~~~~-~~~~-~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~ 164 (365)
++.... +++. ++.|++|+.++.|..+ .+.++.+++.+..++.++..|.+|.+++++|. ++|+..+|.++|++
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-----~~~~~~~g~~~~~~ 168 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-----IPFNKAYGMNIFDY 168 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-----CHHHHHSSSCHHHH
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-----CHHHHHhCCCHHHH
Confidence 986200 0000 2689999999987754 46689998887766677889999999999986 89999999999999
Q ss_pred HhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCC
Q 017835 165 AVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGN 244 (365)
Q Consensus 165 ~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 244 (365)
+..+|+..+.|.+.|...+......+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++..+
T Consensus 169 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 247 (368)
T 3reo_A 169 HGTDHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSG 247 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred HhhCHHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCC
Confidence 9999999999999999887766677777775 256779999999999999999999999999999999999999988889
Q ss_pred eEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh
Q 017835 245 LKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM 324 (365)
Q Consensus 245 i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 324 (365)
++++.+|+++++|..|+|++.++||||+++++.++|++++++|+| ||+|+|+|.+.++.............+++.|+
T Consensus 248 v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 324 (368)
T 3reo_A 248 VEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALML 324 (368)
T ss_dssp EEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHH
Confidence 999999999987767999999999999999999999999999999 99999999998765443211223356777777
Q ss_pred hc-cCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 325 VL-VKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 325 ~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.. .+++.||.++|+++|+++||+++++.+..+..++||++|
T Consensus 325 ~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 325 AYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred hhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 64 489999999999999999999999999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=378.56 Aligned_cols=325 Identities=24% Similarity=0.430 Sum_probs=290.9
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCC
Q 017835 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSE 94 (365)
Q Consensus 15 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 94 (365)
...++...+++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++||||+|++.|+|++ +
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~--- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S--- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E---
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c---
Confidence 345788899999999999999999999999999985 79999999999999 67999999999999999999 4
Q ss_pred CCccceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHH
Q 017835 95 NEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHF 174 (365)
Q Consensus 95 ~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 174 (365)
++.|++|+.++.|.++++.++.+++.+..++..+..|.+|+++++++. ++|+..+|.++|+++.++|+..+.
T Consensus 89 ---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-----~~~~~~~g~~~~~~~~~~~~~~~~ 160 (348)
T 3lst_A 89 ---DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-----PAFADIFGSSLDAYFDGDAEVEAL 160 (348)
T ss_dssp ---TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-----CCHHHHHSSCHHHHHTTCHHHHHH
T ss_pred ---CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-----ChhhHHhCCCHHHHHHhCHHHHHH
Confidence 699999999998888877788988887656556789999999999886 788888998999999999999999
Q ss_pred HHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-----CCCeEEEe
Q 017835 175 FNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-----NGNLKYVG 249 (365)
Q Consensus 175 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~i~~~~ 249 (365)
|.+.|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .+|++++.
T Consensus 161 f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~ 238 (348)
T 3lst_A 161 YYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVE 238 (348)
T ss_dssp HHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEE
T ss_pred HHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEe
Confidence 999999988777788888888 78889999999999999999999999999999999877773321 56899999
Q ss_pred CCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 250 GNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 250 ~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
+|+++++|.||+|++.+++|||+++++.++|++++++||| ||+|+|.|.+.++.... .....+++.++...++
T Consensus 239 ~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~~~ 311 (348)
T 3lst_A 239 GDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDA----HQSKEMDFMMLAARTG 311 (348)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSC----CHHHHHHHHHHHTTSC
T ss_pred cCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhhhcChhhhhcCCC
Confidence 9999877799999999999999999999999999999999 99999999988776432 2335677777777789
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+.++.++|.++|+++||+++++++..+..++|+++|
T Consensus 312 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 312 QERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 999999999999999999999999777899999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=376.42 Aligned_cols=346 Identities=47% Similarity=0.881 Sum_probs=296.9
Q ss_pred CCCCCCchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc
Q 017835 7 KNNDNISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF 86 (365)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~ 86 (365)
.++..+.++.+++...+++++.+++.+++|++++++|||+.|...++|.|++|||+++|++|.+++.++||||+|++.|+
T Consensus 4 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gl 83 (352)
T 1fp2_A 4 SINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGF 83 (352)
T ss_dssp ----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTS
T ss_pred cccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCe
Confidence 34555668899999999999999999999999999999999986335999999999999976668899999999999999
Q ss_pred eecc--ccCCCCccceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhh-cCCCCCCCCccccccCCChhH
Q 017835 87 FALQ--KTSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQ-NDDDDDAATTFALPHGMNFWD 163 (365)
Q Consensus 87 l~~~--~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~g~~~~~ 163 (365)
|++. + ++.|++|+.+++|.++++.++.+++.+..++..+..|.+|+++++ +|. ++|+.++|.++|+
T Consensus 84 l~~~~~~------~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-----~~~~~~~g~~~~~ 152 (352)
T 1fp2_A 84 FEIITKE------EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-----TLFGVTLGSGFWD 152 (352)
T ss_dssp EEEEESS------SEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-----CHHHHHHSSCHHH
T ss_pred EEEecCC------CCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-----ChHHHHcCCCHHH
Confidence 9987 3 589999999999998887789999887766667889999999999 665 8898888999999
Q ss_pred HHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCC
Q 017835 164 YAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNG 243 (365)
Q Consensus 164 ~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 243 (365)
++.++|+..+.|.+.|.......... ++.+++.+++..+|||||||+|.++..+++++|+++++++|++.+++.+++..
T Consensus 153 ~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 231 (352)
T 1fp2_A 153 FLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN 231 (352)
T ss_dssp HHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBT
T ss_pred HHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCC
Confidence 99999999999999999887665555 67773236778999999999999999999999999999999999999888766
Q ss_pred CeEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh
Q 017835 244 NLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM 323 (365)
Q Consensus 244 ~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 323 (365)
+++++.+|+++++|.||+|++.+++|||+++++.++|++++++|+|.++||+|+|.|...++....+........+++.|
T Consensus 232 ~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 311 (352)
T 1fp2_A 232 NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM 311 (352)
T ss_dssp TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG
T ss_pred CcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHH
Confidence 79999999998888899999999999999998899999999999971126999999998876543210112334667766
Q ss_pred hhccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 324 MVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 324 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+. .+++.|+.++|.++|+++||+++++++.++..++|+++|
T Consensus 312 ~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 312 AC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp GG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred Hh-ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 65 558889999999999999999999999888899999987
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=376.21 Aligned_cols=323 Identities=26% Similarity=0.502 Sum_probs=291.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCC
Q 017835 17 LQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENE 96 (365)
Q Consensus 17 ~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 96 (365)
.....++++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++||||+|++.|++++.+
T Consensus 36 ~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~----- 105 (369)
T 3gwz_A 36 AAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG----- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS-----
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC-----
Confidence 3667789999999999999999999999999985 79999999999999 6799999999999999999975
Q ss_pred ccce-EecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHH
Q 017835 97 QEEG-YILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFF 175 (365)
Q Consensus 97 ~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 175 (365)
++. |.+|+.++.|.++++.++.+++.+...+..+..|.+|.++++++. ++|...+|.++|+++.++|+..+.|
T Consensus 106 -~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-----~~~~~~~g~~~~~~~~~~~~~~~~f 179 (369)
T 3gwz_A 106 -HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-----ASFDVANGTSFWQLTHEDPKARELF 179 (369)
T ss_dssp -STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-----CSHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred -CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-----ChhHhhcCCCHHHHHHhCHHHHHHH
Confidence 678 999999998888877788888887655556789999999999987 7888889989999999999999999
Q ss_pred HHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEE
Q 017835 176 NEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYV 248 (365)
Q Consensus 176 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~ 248 (365)
.+.|..........+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++|+++
T Consensus 180 ~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~ 257 (369)
T 3gwz_A 180 NRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL 257 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEe
Confidence 99999887777777888887 67889999999999999999999999999999999888888874 4789999
Q ss_pred eCCCCCCCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc
Q 017835 249 GGNMFEAIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV 327 (365)
Q Consensus 249 ~~d~~~~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (365)
.+|+++++| .||+|++.+++|+|+++++.++|++++++|+| ||+|+|.|.+.++.... . ...+++.|+...
T Consensus 258 ~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~ 329 (369)
T 3gwz_A 258 PGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV 329 (369)
T ss_dssp ECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH
T ss_pred ccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc
Confidence 999998777 69999999999999999999999999999999 99999999998776432 2 457788887778
Q ss_pred CccccCHHHHHHHHHhcCCccceEEE-cCCceeEEEEeC
Q 017835 328 KGEERNEKEWAKLFFEAGFSDYKITD-VLGVRSLIEVYP 365 (365)
Q Consensus 328 ~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 365 (365)
+++.||.++|.++|+++||+++++++ ..+..++|+++|
T Consensus 330 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 330 GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 89999999999999999999999999 577899999986
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-50 Score=375.75 Aligned_cols=348 Identities=47% Similarity=0.866 Sum_probs=296.7
Q ss_pred hHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc-
Q 017835 14 DELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT- 92 (365)
Q Consensus 14 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~- 92 (365)
.+.+++...+++++.+++.+++|++++++|||+.|...++|+|++|||+++|++|.+++.++||||+|++.|+|++...
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~ 84 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 84 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEeccc
Confidence 5678889999999999999999999999999999986335999999999999987678999999999999999998610
Q ss_pred -CC-CCc-cceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCc
Q 017835 93 -SE-NEQ-EEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRET 169 (365)
Q Consensus 93 -~~-~~~-~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 169 (365)
.+ +|. ++.|++|+.+++|.++++.++.+++.+..++.++..|.+|+++++++.+ .++|+.++|.++|+++.++|
T Consensus 85 ~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~---~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 85 GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKE---QTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp CSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCC---CCHHHHHHSSCHHHHHTSGG
T ss_pred ccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---CChHHHHhCCCHHHHHhcCh
Confidence 00 000 2789999999999988877899999887666678899999999999831 27888888999999999999
Q ss_pred hHHH--HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEE
Q 017835 170 RLNH--FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKY 247 (365)
Q Consensus 170 ~~~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~ 247 (365)
+..+ .|++.|........ .+++.+++.+++..+|||||||+|.++..+++++|+++++++|++.+++.+++..++++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999988776555 67777732367789999999999999999999999999999999999998887677999
Q ss_pred EeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc
Q 017835 248 VGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV 327 (365)
Q Consensus 248 ~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (365)
+.+|+++++|.||+|+++++||||+++++.++|++++++|+|.++||+|+|.|...++....+........+++.|+...
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 320 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF 320 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC
Confidence 99999998888999999999999999988999999999999711169999999988765432101123456777777667
Q ss_pred CccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 328 KGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 328 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+++.|+.++|.++|+++||+++++++.++..++|+++|
T Consensus 321 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 321 LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 88999999999999999999999999988899999987
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=373.06 Aligned_cols=354 Identities=29% Similarity=0.494 Sum_probs=278.6
Q ss_pred CCCCCCCCCCchHhhhHHHHHH--HHHHhHHHHHHHHHHHHcCcccccccCCCC---CCHHHHHHHcCC---CCCCcchH
Q 017835 3 LTKGKNNDNISDELLQSQAHVW--NNIFSFVNSMSLKCAIQLGIPDIIHNHAKP---MTLNQLLTTLQI---HPTKTQCV 74 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~--~~~~g~~~~~~L~~a~~lglf~~L~~~~~~---~t~~~la~~~~~---~~~~~~~l 74 (365)
+++..+.....++.+++...++ +++.|++.+++|++++++|||+.|...++| +|++|||+++|+ +|.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l 85 (372)
T 1fp1_D 6 ITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRL 85 (372)
T ss_dssp -------------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHH
T ss_pred ccccccccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHH
Confidence 4667777777888889999999 999999999999999999999999863216 999999999999 76668999
Q ss_pred HHHHHHHHhcCceecccc-CCCC-ccceEecCccchhhhcCCC-CChHHHHHHccCcccccchhhHHHHhhcC-CCCCCC
Q 017835 75 YHLMRILVHSGFFALQKT-SENE-QEEGYILTSASKLLLKDHP-LSLAPFLLAMLDPILTKPWHQVSTWIQND-DDDDAA 150 (365)
Q Consensus 75 ~~lL~~L~~~g~l~~~~~-~~~~-~~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~ 150 (365)
+||||+|++.|+|++... +++| .++.|++|+.+++|.++++ .++.+++.+..++.++..|.+|+++++++ .
T Consensus 86 ~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~----- 160 (372)
T 1fp1_D 86 DRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI----- 160 (372)
T ss_dssp HHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC------
T ss_pred HHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-----
Confidence 999999999999998610 0000 0258999999999988876 67888888776666778999999999998 5
Q ss_pred CccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEe
Q 017835 151 TTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVF 230 (365)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~ 230 (365)
++|+.++|.++|+++.++|+....|.+.|..........+++.++ .+++..+|||||||+|.++..+++++|+++++++
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~ 239 (372)
T 1fp1_D 161 DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINF 239 (372)
T ss_dssp -------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEe
Confidence 788888899999999999999999999998877666677777775 2567789999999999999999999999999999
Q ss_pred echHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc
Q 017835 231 DQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY 310 (365)
Q Consensus 231 D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~ 310 (365)
|++.+++.+++..+++++.+|+++++|.||+|++.++||||+++++.++|++++++|+| ||+|+|.|...++.....
T Consensus 240 D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~ 316 (372)
T 1fp1_D 240 DLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTS 316 (372)
T ss_dssp ECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSS
T ss_pred ChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccc
Confidence 99999999887678999999999887789999999999999999889999999999999 999999999887654321
Q ss_pred cchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEEeC
Q 017835 311 KTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEVYP 365 (365)
Q Consensus 311 ~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 365 (365)
........+++.++...+++.|+.++|.++|+++||+++++++. ++..++||++|
T Consensus 317 ~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 317 EESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred hHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 01113456677666555788999999999999999999999984 55359999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-49 Score=366.65 Aligned_cols=316 Identities=23% Similarity=0.356 Sum_probs=279.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccce
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG 100 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~ 100 (365)
..+++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++||||+|++.|++.+.+ ++.
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~------~~~ 75 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG------QGV 75 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSB
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC------CCe
Confidence 457899999999999999999999999985 79999999999999 6799999999999999999975 689
Q ss_pred EecCccchhhhcCCCCChHHHHHHccCcccc-cchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHh
Q 017835 101 YILTSASKLLLKDHPLSLAPFLLAMLDPILT-KPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGM 179 (365)
Q Consensus 101 y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 179 (365)
|.+|+.++.|.++++.++.+++.+......+ ..|.+|+++++++. ++|+..+|.++|+++.++|+....|.+.|
T Consensus 76 y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (332)
T 3i53_A 76 YGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-----PAYPVRYGTSFWEDLGSDPVLSASFDTLM 150 (332)
T ss_dssp EEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-----CSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred EEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-----CHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence 9999999988877777888888765333344 78999999999987 78888889899999999999999999999
Q ss_pred hcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCC
Q 017835 180 ASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNM 252 (365)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~ 252 (365)
........+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .+||+++.+|+
T Consensus 151 ~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 228 (332)
T 3i53_A 151 SHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF 228 (332)
T ss_dssp HHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC
Confidence 9877665566677777 56779999999999999999999999999999999989888874 47899999999
Q ss_pred CCCCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccc
Q 017835 253 FEAIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEE 331 (365)
Q Consensus 253 ~~~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 331 (365)
++++| +||+|++.+++|||+++++.++|++++++|+| ||+|+|.|.+.++. .. ...+++.|+...+++.
T Consensus 229 ~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~ 298 (332)
T 3i53_A 229 FDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKE 298 (332)
T ss_dssp TSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCC
Confidence 98777 79999999999999999999999999999999 99999999988765 21 1467777777778999
Q ss_pred cCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 332 RNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
||.++|.++|+++||+++++++.++ .++|++++
T Consensus 299 ~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 299 RSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999999999988 99999875
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-48 Score=359.41 Aligned_cols=319 Identities=22% Similarity=0.383 Sum_probs=284.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
++...+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++||||+|++.|++++.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 567889999999999999999999999999975 79999999999999 6799999999999999999975
Q ss_pred cceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHH
Q 017835 98 EEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNE 177 (365)
Q Consensus 98 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (365)
++.|++|+.++.|. +++.++.+++.+..++.. ..|.+|+++++++. ++|+..+|.++|+++.++|+..+.|.+
T Consensus 76 ~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~f~~ 148 (334)
T 2ip2_A 76 RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-----PGFELAFGEDFYSYLKRCPDAGRRFLL 148 (334)
T ss_dssp TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-----CHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-----ChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence 68999999999888 777788999887765544 88999999999987 788888899999999999999999999
Q ss_pred HhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeC
Q 017835 178 GMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGG 250 (365)
Q Consensus 178 ~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~ 250 (365)
.| ..+......+++.++ +++ .+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+
T Consensus 149 ~m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 224 (334)
T 2ip2_A 149 AM-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224 (334)
T ss_dssp HH-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEES
T ss_pred HH-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecC
Confidence 99 777666677888887 566 9999999999999999999999999999999888887764 478999999
Q ss_pred CCCCCCCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 251 NMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 251 d~~~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
|+++++|+ ||+|++.+++|||+++++.++|++++++|+| ||+++|.|...++.... .....+++.++...++
T Consensus 225 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~ 297 (334)
T 2ip2_A 225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAG 297 (334)
T ss_dssp CTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCC
Confidence 99987764 9999999999999999999999999999999 99999999988765332 2345677777766678
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+.|+.++|.++++++||+++++++.++..++|+++|
T Consensus 298 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 298 RHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 999999999999999999999999988899999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=350.74 Aligned_cols=328 Identities=17% Similarity=0.207 Sum_probs=268.5
Q ss_pred CchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 12 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
...+.+++...+++++.|++.+++|++++++|||+.|...++|+|++|||+++|+ +++.++||||+|++.|+|+++
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~- 83 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE- 83 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE-
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec-
Confidence 3456788999999999999999999999999999999864479999999999999 679999999999999999885
Q ss_pred cCCCCccceEecCccchhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccC--CChhHHHhhCc
Q 017835 92 TSENEQEEGYILTSASKLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHG--MNFWDYAVRET 169 (365)
Q Consensus 92 ~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g--~~~~~~~~~~~ 169 (365)
++.|++|+.+++|.++++ ...++.+. .+..++.|.+|+++++++. .++...+| .++|+++.++|
T Consensus 84 ------~~~y~~t~~s~~L~~~~~--~~~~~~~~-~~~~~~~~~~L~~~lr~g~-----~~~~~~~g~~~~~~~~~~~~~ 149 (363)
T 3dp7_A 84 ------EDRYVLAKAGWFLLNDKM--ARVNMEFN-HDVNYQGLFHLEEALLNGR-----PEGLKVFGEWPTIYEGLSQLP 149 (363)
T ss_dssp ------TTEEEECHHHHHHHHCHH--HHHHHHHH-HHTTHHHHTTHHHHHHHSS-----CGGGGGTCCCSSHHHHGGGSC
T ss_pred ------CCEEecccchHHhhCCCc--ccchheee-cHHhhhhHHHHHHHHhcCC-----CccccccCchHhHHHHHhhCH
Confidence 589999999999887763 22233333 3456889999999999987 56777777 68999999999
Q ss_pred hHHH----HHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc----
Q 017835 170 RLNH----FFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---- 241 (365)
Q Consensus 170 ~~~~----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---- 241 (365)
+..+ .|...|.... ...++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 150 ~~~~~~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 224 (363)
T 3dp7_A 150 EQVQKSWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAG 224 (363)
T ss_dssp HHHHHHHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHh
Confidence 8766 3566555433 233444444 35678999999999999999999999999999999999988875
Q ss_pred ---CCCeEEEeCCCCCC---CC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc-ch
Q 017835 242 ---NGNLKYVGGNMFEA---IP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK-TT 313 (365)
Q Consensus 242 ---~~~i~~~~~d~~~~---~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~-~~ 313 (365)
.+|++++.+|++++ +| +||+|++.++||+|+++++.++|++++++|+| ||+|+|+|.+.++...... +.
T Consensus 225 ~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~ 301 (363)
T 3dp7_A 225 LSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYC 301 (363)
T ss_dssp CTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHH
T ss_pred cCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhH
Confidence 25899999999984 66 59999999999999999999999999999999 9999999998876543210 00
Q ss_pred hhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCCc-eeEEEEeC
Q 017835 314 ETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGV-RSLIEVYP 365 (365)
Q Consensus 314 ~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 365 (365)
......++.++...+++.|+.++|.++|+++||+++++++..+. .++|+++|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 302 LTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 11122333444445788999999999999999999999977554 89999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=346.20 Aligned_cols=325 Identities=22% Similarity=0.334 Sum_probs=279.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCC
Q 017835 16 LLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSEN 95 (365)
Q Consensus 16 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~ 95 (365)
..+....+++++.|++.+++|++++++|||+.|.. +|+|++|||+++|+ +++.++||||+|++.|++++.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence 34567789999999999999999999999999964 79999999999999 6899999999999999999864
Q ss_pred Cccc--eEecCccchhhhcCCCCChHHHHHHccCcccc-cchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHH
Q 017835 96 EQEE--GYILTSASKLLLKDHPLSLAPFLLAMLDPILT-KPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLN 172 (365)
Q Consensus 96 ~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 172 (365)
++ .|.+|+.+++|.++++.++..++.+...+..+ ..|.+|.+.++++. ++|...+|.++|+++..+|+..
T Consensus 84 --~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~g~~~~~~~~~~~~~~ 156 (374)
T 1qzz_A 84 --KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-----PAYAGRYGRPFWEDLSADVALA 156 (374)
T ss_dssp --C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-----CSHHHHHSSCHHHHHHHCHHHH
T ss_pred --CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-----ChhhhhhCCCHHHHHhhChHHH
Confidence 56 99999999999988887888888766433345 78899999999987 6788888999999999999999
Q ss_pred HHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCe
Q 017835 173 HFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNL 245 (365)
Q Consensus 173 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i 245 (365)
..|.+.|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .+++
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 234 (374)
T 1qzz_A 157 DSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV 234 (374)
T ss_dssp HHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCce
Confidence 99999998877776777888887 67789999999999999999999999999999999888888774 2489
Q ss_pred EEEeCCCCCCCCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee--ecCCCccCccchhhhhhhhhh
Q 017835 246 KYVGGNMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI--KMESEKADYKTTETQLFMDML 322 (365)
Q Consensus 246 ~~~~~d~~~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~--~~~~~~~~~~~~~~~~~~d~~ 322 (365)
+++.+|+++++|. ||+|++.+++|||+++.+.++|++++++|+| ||+++|.|. ..++.... .....+++.
T Consensus 235 ~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~ 307 (374)
T 1qzz_A 235 TVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLR 307 (374)
T ss_dssp EEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHH
T ss_pred EEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchH
Confidence 9999999987774 9999999999999999888999999999999 999999998 76544221 233466777
Q ss_pred hhhccCccccCHHHHHHHHHhcCCccceEEEcCCce-----eEEEEeC
Q 017835 323 MMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVR-----SLIEVYP 365 (365)
Q Consensus 323 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 365 (365)
++...+++.++.++|.++|+++||++++++..++.. ++|+++|
T Consensus 308 ~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 308 MLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 766667899999999999999999999999988776 8999874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=341.02 Aligned_cols=322 Identities=24% Similarity=0.411 Sum_probs=281.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCcc
Q 017835 19 SQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQE 98 (365)
Q Consensus 19 ~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 98 (365)
..+++++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ ++..++|+|++|++.|++++.+ +
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~------~ 87 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------P 87 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------T
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC------C
Confidence 36788999999999999999999999999974 79999999999999 6899999999999999999965 6
Q ss_pred ceEecCccchhhhcCCCCChHHHHHHccCcc-cccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHH
Q 017835 99 EGYILTSASKLLLKDHPLSLAPFLLAMLDPI-LTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNE 177 (365)
Q Consensus 99 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (365)
+.|++|+.+++|.++++.++..++.+...+. .+..|.+|.+.++++. ++++..+|.++|+++..+|+....|..
T Consensus 88 g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-----~~~~~~~g~~~~~~~~~~p~~~~~f~~ 162 (360)
T 1tw3_A 88 GEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-----PTYESIYGKPFYEDLAGRPDLRASFDS 162 (360)
T ss_dssp TEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-----CCHHHHHSSCHHHHHHTCHHHHHHHHH
T ss_pred CeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-----CHHHHhcCCCHHHHHHhChHHHHHHHH
Confidence 8999999999999888888888876654333 5678899999999986 678888889999999999999999999
Q ss_pred HhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeC
Q 017835 178 GMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGG 250 (365)
Q Consensus 178 ~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~ 250 (365)
.|..........+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++++++.+
T Consensus 163 ~~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 240 (360)
T 1tw3_A 163 LLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 240 (360)
T ss_dssp HHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 999887777778888887 67789999999999999999999999999999999888887764 348999999
Q ss_pred CCCCCCCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee-cCCCccCccchhhhhhhhhhhhhccC
Q 017835 251 NMFEAIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK-MESEKADYKTTETQLFMDMLMMVLVK 328 (365)
Q Consensus 251 d~~~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~d~~~~~~~~ 328 (365)
|+++++|. ||+|++.+++|+|+++++.++|++++++|+| ||++++.|.. .++.... .....+++.++...+
T Consensus 241 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~ 313 (360)
T 1tw3_A 241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLG 313 (360)
T ss_dssp CTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcC
Confidence 99987764 9999999999999999889999999999999 9999999988 6544221 223456777665567
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEcCCc-----eeEEEEeC
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDVLGV-----RSLIEVYP 365 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~ 365 (365)
++.++.++|.++|+++||+++++++.++. .++|+++|
T Consensus 314 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 314 GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 88999999999999999999999988665 78999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=327.55 Aligned_cols=315 Identities=21% Similarity=0.309 Sum_probs=270.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccce
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG 100 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~ 100 (365)
..+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++||||+|++.|+|+++ ++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~-------~~~ 75 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ-------AEG 75 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec-------CCE
Confidence 578999999999999999999999999985 79999999999999 689999999999999999875 689
Q ss_pred EecCccc-hhhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHh
Q 017835 101 YILTSAS-KLLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGM 179 (365)
Q Consensus 101 y~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 179 (365)
|++|+.+ .++.++++.++.+++.+..++..+..|.+|+++++++. ++++ + |+++.++++....|.+.|
T Consensus 76 y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~-----~-~~~~~~~~~~~~~~~~~~ 144 (335)
T 2r3s_A 76 YRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-----TAIS-----S-EGTLSPEHPVWVQFAKAM 144 (335)
T ss_dssp EEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-----CCST-----T-TGGGSTTCTHHHHHHHHS
T ss_pred EecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-----CCCC-----C-cccccCCHHHHHHHHHHH
Confidence 9999999 68888877788888887755457889999999999986 4443 3 788888898999999999
Q ss_pred hcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCC
Q 017835 180 ASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNM 252 (365)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~ 252 (365)
..........+++.+++...+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp GGGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred HHHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 88776666677777772127789999999999999999999999999999999988887764 35799999999
Q ss_pred CC-CCCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc-Cc
Q 017835 253 FE-AIPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV-KG 329 (365)
Q Consensus 253 ~~-~~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 329 (365)
++ +.+. ||+|++.+++|+|+++++.++|++++++|+| ||+++++|...++....+ .....+++.++... ++
T Consensus 225 ~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 298 (335)
T 2r3s_A 225 FEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNG 298 (335)
T ss_dssp TTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSC
T ss_pred ccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCC
Confidence 98 5664 9999999999999999999999999999999 999999999887643322 23456677776655 78
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
+.++.++|.++++++||+++++++.++..++|+++
T Consensus 299 ~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 299 DAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred CcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 89999999999999999999999998877766664
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=325.57 Aligned_cols=313 Identities=17% Similarity=0.314 Sum_probs=265.8
Q ss_pred chHhhhHHHHHHHHHH-hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 13 SDELLQSQAHVWNNIF-SFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 13 ~~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.++.+++..++++++. |++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~- 97 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE- 97 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEee-
Confidence 4567788889999996 9999999999999999999985 79999999999999 689999999999999999997
Q ss_pred cCCCCccceEecCcc-chhhhcCCC---CChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhh
Q 017835 92 TSENEQEEGYILTSA-SKLLLKDHP---LSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVR 167 (365)
Q Consensus 92 ~~~~~~~~~y~~t~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 167 (365)
++.|++|+. +.++.++++ .++.+++.+. ....+..|.+|+++++++. + |+++..
T Consensus 98 ------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~-----~----------~~~~~~ 155 (359)
T 1x19_A 98 ------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQK-----N----------FKGQVP 155 (359)
T ss_dssp ------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSC-----C----------CCCSSC
T ss_pred ------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCC-----C----------Cccccc
Confidence 479999995 558888777 6888888765 3456788999999999885 1 455566
Q ss_pred Cch---HHHHHHHHhhcCcc-cchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc--
Q 017835 168 ETR---LNHFFNEGMASDTR-LTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-- 241 (365)
Q Consensus 168 ~~~---~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-- 241 (365)
+|+ ....|.+.|..... .....+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++
T Consensus 156 ~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 233 (359)
T 1x19_A 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENA 233 (359)
T ss_dssp SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHH
Confidence 777 88899999998887 76777888887 67889999999999999999999999999999999888888774
Q ss_pred -----CCCeEEEeCCCCC-CCCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhh
Q 017835 242 -----NGNLKYVGGNMFE-AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTET 315 (365)
Q Consensus 242 -----~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~ 315 (365)
.++++++.+|+++ +++++|+|++.+++|+|+++++.++|++++++|+| ||+++|+|...++. ..+ ..
T Consensus 234 ~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~~---~~ 306 (359)
T 1x19_A 234 AEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDP-ENP---NF 306 (359)
T ss_dssp HHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCT-TSC---CH
T ss_pred HhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCC-CCc---hH
Confidence 4579999999998 56678999999999999998899999999999999 99999999988765 221 11
Q ss_pred hhhhhhhhhh-ccCccc----cCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 316 QLFMDMLMMV-LVKGEE----RNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 316 ~~~~d~~~~~-~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
...+ .++. ..+++. ++.++|.++|+++||+++++++.+ ..++|+++|
T Consensus 307 ~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 307 DYLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 2222 2222 234666 899999999999999999999988 788999876
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=322.93 Aligned_cols=315 Identities=16% Similarity=0.265 Sum_probs=261.5
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCC
Q 017835 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSE 94 (365)
Q Consensus 15 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 94 (365)
..++.+..+++++.|++.+.+|++++++|||+.|. +|+|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 20 ~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~---- 89 (352)
T 3mcz_A 20 AALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE---- 89 (352)
T ss_dssp CCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec----
Confidence 34556667999999999999999999999999996 49999999999999 679999999999999999997
Q ss_pred CCccceEecCccch-hhhcCCCCChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHH
Q 017835 95 NEQEEGYILTSASK-LLLKDHPLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNH 173 (365)
Q Consensus 95 ~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 173 (365)
++.|.+|+.++ ++.++.+.+++.++.+.. ..+..|.+|++++++|. +.+|+. ..++..+++...
T Consensus 90 ---~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~g~----~~~f~~------~~~~~~~~~~~~ 154 (352)
T 3mcz_A 90 ---GDAFRNTALTERYLTTTSADYIGPIVEHQY--LQWDNWPRLGEILRSEK----PLAFQQ------ESRFAHDTRARD 154 (352)
T ss_dssp ---TTEEEECHHHHHHHSTTCTTCCHHHHHHHH--TTTTTGGGHHHHHTCSS----CCTTSH------HHHTTTCHHHHH
T ss_pred ---CCeeecCHHHHhhccCCChhhHHHHHHHhH--HHHHHHHHHHHHHhCCC----CCCccc------ccccccCHHHHH
Confidence 47899999997 666777778888876542 36789999999999986 233322 123356788889
Q ss_pred HHHHHhhcCcccchHHHHhhccccccC-CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCe
Q 017835 174 FFNEGMASDTRLTSSALIHKCKDVFEG-LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNL 245 (365)
Q Consensus 174 ~~~~~m~~~~~~~~~~~~~~~~~~~~~-~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i 245 (365)
.|.+.|...... ...+++.++ +.+ ..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .+|+
T Consensus 155 ~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (352)
T 3mcz_A 155 AFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRV 231 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCce
Confidence 999999873322 236777887 555 89999999999999999999999999999999888887764 3589
Q ss_pred EEEeCCCCCC---CC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhh
Q 017835 246 KYVGGNMFEA---IP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDM 321 (365)
Q Consensus 246 ~~~~~d~~~~---~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 321 (365)
+++.+|++++ .+ +||+|++.+++|||+++++.++|++++++|+| ||+|+|.|.+.++....+ .....+++
T Consensus 232 ~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~ 305 (352)
T 3mcz_A 232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSL 305 (352)
T ss_dssp EEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHH
T ss_pred EEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhH
Confidence 9999999984 55 49999999999999999999999999999999 999999999988765432 33457777
Q ss_pred hhhhcc-CccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 322 LMMVLV-KGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 322 ~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.++... +++.|+.++|.++|+++||++++.. .+...++.++|
T Consensus 306 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 306 HMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 777544 7889999999999999999998843 34577777664
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=167.80 Aligned_cols=161 Identities=12% Similarity=0.153 Sum_probs=122.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~ 266 (365)
.+++.+|||||||+|.++..|++.+ |+++++++|+ +.|++.|++ ..+|+++++|+.+ +++++|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4788999999999999999999975 6789999999 999998874 4589999999988 777899999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc--------------cCcccc
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL--------------VKGEER 332 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--------------~~~~~~ 332 (365)
+||++++++..++|++++++|+| ||++++.|............ ....+.++..... ..-...
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999998888999999999999 99999999887654321100 0001111100000 001235
Q ss_pred CHHHHHHHHHhcCCccceEEEc-CCceeEEE
Q 017835 333 NEKEWAKLFFEAGFSDYKITDV-LGVRSLIE 362 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~ 362 (365)
+.+++.++|+++||+.++++-- ..+.++|-
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA 254 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVA 254 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEE
Confidence 8899999999999999888644 44445543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-19 Score=154.69 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=125.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC-CceEEEecccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN 270 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~ 270 (365)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH 121 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence 35678999999999999999999999999999999 888888775 3489999999988 444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh-------------hhhccCccccCHHHH
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML-------------MMVLVKGEERNEKEW 337 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-------------~~~~~~~~~~t~~e~ 337 (365)
+++++..++|++++++|+| ||++++.+...+........ ....+.... .........++.++|
T Consensus 122 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (234)
T 3dtn_A 122 LEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQ 197 (234)
T ss_dssp SCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHH
Confidence 9998878899999999999 99999999887654321100 000000000 000012345689999
Q ss_pred HHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 338 AKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
.++|+++||++++++......+++..+
T Consensus 198 ~~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 198 LNWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp HHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCceeeeeeecceeEEEEE
Confidence 999999999999998887666665544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-18 Score=147.22 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=125.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~- 257 (365)
..+++.+. ..++.+|||||||+|.++..+++.+ |..+++++|. +.+++.+++ ..+++++.+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 44555565 6778899999999999999999996 8889999999 888888775 3589999999987 444
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||+++. ..+|++++++|+| ||++++.++......... .....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHHH
Confidence 49999999999999876 7899999999999 999999987665442221 0122358999
Q ss_pred HHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 337 WAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
|.++++++||+++++.........+.++|
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999988877666655553
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=149.74 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=122.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-C-CCeEEEeCCCCC-CCC-CceEEE
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-N-GNLKYVGGNMFE-AIP-PADAVL 263 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~-~~i~~~~~d~~~-~~~-~~D~i~ 263 (365)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +.+ .||+|+
T Consensus 36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV 111 (220)
T ss_dssp HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence 4555555 567889999999999999999987 679999999 888888876 3 489999999988 444 699999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh--hhhccCccccCHHHHHHHH
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML--MMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~t~~e~~~ll 341 (365)
+..++||+++++...+|++++++|+| ||.+++.++...................+. .........++.++|.++|
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 99999999999777799999999999 999999987665432210000000000000 0000112334889999999
Q ss_pred HhcCCccceEEEcCCceeEEEEeC
Q 017835 342 FEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 342 ~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+++||+++.+.. ....+++.+.|
T Consensus 189 ~~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 189 ENNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HHTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HHCCCEEEEeec-cceEEEEeehh
Confidence 999998765544 46677777653
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=150.62 Aligned_cols=167 Identities=20% Similarity=0.221 Sum_probs=121.1
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-- 257 (365)
.+++.++ .++. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 35 ~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 35 NIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 3444444 3444 9999999999999999998 8889999999 888888775 3589999999988 555
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhh-hhhhhhhhhccCccccCHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQ-LFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||+++. .++|++++++|+| ||++++.+...+............ ....+..........++.++
T Consensus 111 ~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
T 3dlc_A 111 YADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVER 185 (219)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHH
T ss_pred cccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHH
Confidence 49999999999999776 6899999999999 899999875543321110000000 00001100001233458899
Q ss_pred HHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 337 WAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
|.++|+++||+++++.......+++..+
T Consensus 186 ~~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 186 FQNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHHcCCCeEEEEecCCceEEEEec
Confidence 9999999999999999887777765544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=141.94 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=114.8
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCCCCC--CceEEE
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFEAIP--PADAVL 263 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~~~--~~D~i~ 263 (365)
.+++.+. ...+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|+
T Consensus 36 ~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 36 AALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 3444443 1456679999999999999999998 679999999 888888876 3689999999988533 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccC-------ccccCHHH
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK-------GEERNEKE 336 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~t~~e 336 (365)
+..++||+++++...+|++++++|+| ||.+++.+...+.......+.. ............ ....+.++
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHH
Confidence 99999999998889999999999999 9999999886643221100000 000000000011 22359999
Q ss_pred HHHHHHhcCCccceEEEcC
Q 017835 337 WAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~ 355 (365)
|.++++++||++......+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHCCCEEEeeeccc
Confidence 9999999999955444444
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=148.85 Aligned_cols=158 Identities=16% Similarity=0.323 Sum_probs=119.7
Q ss_pred CcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC
Q 017835 182 DTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE 254 (365)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 254 (365)
........+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+
T Consensus 21 ~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 21 AKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp --CCCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred cCHHHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 33344456666666 66789999999999999999999864 9999999 888888764 2579999999987
Q ss_pred -CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh--ccCc
Q 017835 255 -AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV--LVKG 329 (365)
Q Consensus 255 -~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~ 329 (365)
+++ .||+|++..++||+++. ..+|++++++|+| ||++++.+...+.... ...++...... ....
T Consensus 97 l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 165 (260)
T 1vl5_A 97 MPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHH 165 (260)
T ss_dssp CCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCCCHH------HHHHHHHHHHhcCcccc
Confidence 655 49999999999999987 6899999999999 9999999887654321 11111111111 1134
Q ss_pred cccCHHHHHHHHHhcCCccceEEEc
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..++.++|.++|+++||+++.+...
T Consensus 166 ~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 166 RAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 5579999999999999998877654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=148.51 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=117.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3478999999999999999999876 8999999 888888775 3789999999988 544 599999999987
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh---hccC------------------
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM---VLVK------------------ 328 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~---~~~~------------------ 328 (365)
++..++..++|++++++|+| ||++++.++..+...... ...........+. ....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence 77777778999999999999 999999887543221100 0000000000000 0000
Q ss_pred ccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 329 GEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 329 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
....+ .+|.++|+++||+.+++........+|+++|
T Consensus 191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 11112 4899999999999999999987888999886
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=148.93 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=121.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~- 257 (365)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 44556666 6778999999999999999999987 689999999 888887764 3589999999987 554
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||+++. ..+|++++++|+| ||++++.+......... ......+...........++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEG----AKKEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCH----HHHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCCh----hHHHHHHHHHhhcCccCCCCHHH
Confidence 49999999999999877 7899999999999 99999999876543211 11111111111122456679999
Q ss_pred HHHHHHhcCCccceEEEcC
Q 017835 337 WAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~ 355 (365)
|.++++++||+++++...+
T Consensus 199 ~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHcCCeEEEEEECc
Confidence 9999999999998887763
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=146.90 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=122.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~ 259 (365)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 34455555 6778899999999999999999987 789999999 888888876 2689999999988 554 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||+++++...+|++++++|+| ||++++.++..+...... . .+..... ..+...++.++|.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~--~~~~~~~--~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D--EFKEYVK--QRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H--HHHHHHH--HHTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H--HHHHHHh--cCCCCCCCHHHHHH
Confidence 999999999999877779999999999999 999999998766522111 0 1111110 12344669999999
Q ss_pred HHHhcCCccceEEEcC
Q 017835 340 LFFEAGFSDYKITDVL 355 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~ 355 (365)
+++++||+++++....
T Consensus 192 ~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEeCC
Confidence 9999999998887653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=147.67 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=116.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceEEEecc-ccccCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADAVLIKC-VLHNWN 272 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~i~~~~-vlh~~~ 272 (365)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 3456899999999999999999884 58999999 889998876 5689999999988 444 599999998 999996
Q ss_pred h-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc------------ch--------hhhhhhhhhhhhc-----
Q 017835 273 D-EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK------------TT--------ETQLFMDMLMMVL----- 326 (365)
Q Consensus 273 ~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~------------~~--------~~~~~~d~~~~~~----- 326 (365)
+ ++...+|++++++|+| ||++++.+...+....... +. .....+++.+...
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 5 4667999999999999 8888886543333211000 00 0000001111000
Q ss_pred -------cCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEe
Q 017835 327 -------VKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 327 -------~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 364 (365)
...+.++.++|.++|+++||+++++........++.++
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~ 247 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGL 247 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEe
Confidence 01234589999999999999999987776665555554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-17 Score=144.82 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=117.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~- 257 (365)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 34455555 6778899999999999999999987 679999999 888888764 2589999999987 333
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++..++||+++. .++|++++++|+| ||++++.++......... . +.... ........++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQAC-GVSSTSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHTT-TCSCGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHHH-hcccccccCCHHHH
Confidence 59999999999999876 7889999999999 999999988765432211 0 11100 00112345699999
Q ss_pred HHHHHhcCCccceEEEc
Q 017835 338 AKLFFEAGFSDYKITDV 354 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~ 354 (365)
.++|+++||+++++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-17 Score=147.75 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=114.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 5678899999999999999999986 569999999 888887764 3689999999988 554 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
++||+++. ..+|++++++|+| ||++++.++......... ....++... ......+.++|.++++++||
T Consensus 159 ~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~l~~aGf 226 (297)
T 2o57_A 159 AFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMGSLGLYRSLAKECGL 226 (297)
T ss_dssp CGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCCCHHHHHHHHHHTTE
T ss_pred hhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCCCHHHHHHHHHHCCC
Confidence 99999885 7899999999999 999999998765543211 111111111 11234589999999999999
Q ss_pred ccceEEEcC
Q 017835 347 SDYKITDVL 355 (365)
Q Consensus 347 ~~~~~~~~~ 355 (365)
+++++....
T Consensus 227 ~~~~~~~~~ 235 (297)
T 2o57_A 227 VTLRTFSRP 235 (297)
T ss_dssp EEEEEEECH
T ss_pred eEEEEEECc
Confidence 999887653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=145.82 Aligned_cols=149 Identities=19% Similarity=0.286 Sum_probs=117.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D 260 (365)
.+++.++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||
T Consensus 84 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 3445554 5678899999999999999999886 557999999 888888875 2579999999987 444 499
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
+|++..++||+++++..++|++++++|+| ||++++.+......... .+. ......++.++|.++
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccce---------ecc----cCCcccCCHHHHHHH
Confidence 99999999999987889999999999999 99999998754332110 110 112334699999999
Q ss_pred HHhcCCccceEEEcCC
Q 017835 341 FFEAGFSDYKITDVLG 356 (365)
Q Consensus 341 l~~aGf~~~~~~~~~~ 356 (365)
|+++||+++++.....
T Consensus 225 l~~aGf~~~~~~~~~~ 240 (254)
T 1xtp_A 225 FNESGVRVVKEAFQEE 240 (254)
T ss_dssp HHHHTCCEEEEEECTT
T ss_pred HHHCCCEEEEeeecCC
Confidence 9999999998877643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-17 Score=145.99 Aligned_cols=152 Identities=20% Similarity=0.312 Sum_probs=115.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
+.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56789999999999999999999999999999999 888887764 3589999999987 444 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh--hhhccCccccCHHHHHHHHHhcC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML--MMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
+||+++. ..+|++++++|+| ||.+++.++........+........+... .....++..++..+|.++|+++|
T Consensus 115 l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 9999987 5899999999999 999999886543221111000111111111 11113455567789999999999
Q ss_pred CccceEEEc
Q 017835 346 FSDYKITDV 354 (365)
Q Consensus 346 f~~~~~~~~ 354 (365)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999888755
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-17 Score=138.82 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=115.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEeccccccCChh
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~ 274 (365)
.+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||++.+
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 3789999999999999999988 569999999 888988876 6789999999987 443 59999999999999876
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
+...+|++++++|+| ||++++..+........ .. .......++.++|.++|+++||+++++...
T Consensus 119 ~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 182 (203)
T 3h2b_A 119 ELPDALVALRMAVED---GGGLLMSFFSGPSLEPM---------YH----PVATAYRWPLPELAQALETAGFQVTSSHWD 182 (203)
T ss_dssp THHHHHHHHHHTEEE---EEEEEEEEECCSSCEEE---------CC----SSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCC---CcEEEEEEccCCchhhh---------hc----hhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence 778999999999999 89999887654431110 00 011234468999999999999999999887
Q ss_pred CC-ceeEE
Q 017835 355 LG-VRSLI 361 (365)
Q Consensus 355 ~~-~~~vi 361 (365)
+. +...+
T Consensus 183 ~~~p~~~l 190 (203)
T 3h2b_A 183 PRFPHAYL 190 (203)
T ss_dssp TTSSEEEE
T ss_pred CCCcchhh
Confidence 55 34433
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=139.92 Aligned_cols=143 Identities=16% Similarity=0.187 Sum_probs=111.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceEEEecccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADAVLIKCVLHN 270 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~ 270 (365)
.+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++||
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 356789999999999999999988 679999999 888888875 4789999999988 554 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+++. ..+|++++++|+| ||++++.+.......... .+.. ..........++.+++.++++++||++++
T Consensus 129 ~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKS---DGYACIAILGPTAKPREN------SYPR-LYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG------GGGG-GGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh------hhhh-hccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 9876 6889999999999 899998886543322110 1111 11111234456999999999999999998
Q ss_pred EEEc
Q 017835 351 ITDV 354 (365)
Q Consensus 351 ~~~~ 354 (365)
+...
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=144.12 Aligned_cols=161 Identities=12% Similarity=0.152 Sum_probs=120.0
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..+++++.+|+.+-...|
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 34455555 67788999999999999999997764 59999999 888888764 358999999996522569
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccC----ccch-hhhhhhhhhhh-hccCccccC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKAD----YKTT-ETQLFMDMLMM-VLVKGEERN 333 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~----~~~~-~~~~~~d~~~~-~~~~~~~~t 333 (365)
|+|++..++||+++++...+|++++++|+| ||++++.+......... .+.. ......++... ...++..++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 999999999999766668999999999999 99999999876543210 0000 00011111111 123456679
Q ss_pred HHHHHHHHHhcCCccceEEEc
Q 017835 334 EKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.++|.++++++||+++++...
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCcEEEEEEeC
Confidence 999999999999999988765
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=140.93 Aligned_cols=151 Identities=19% Similarity=0.326 Sum_probs=116.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--P 258 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~ 258 (365)
.+++.+. ..++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .
T Consensus 12 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 12 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred hHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 3445555 67889999999999999999998864 8999999 888887764 3689999999987 554 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--hccCccccCHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--VLVKGEERNEKE 336 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~t~~e 336 (365)
||+|++..++||+++. ..+|++++++|+| ||++++.+...+.... ...+...... .....+.++.++
T Consensus 88 fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPV------LDEFVNHLNRLRDPSHVRESSLSE 156 (239)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred EEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCChh------HHHHHHHHHHhccccccCCCCHHH
Confidence 9999999999999876 6899999999999 9999999887654321 1111111111 012345679999
Q ss_pred HHHHHHhcCCccceEEEc
Q 017835 337 WAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~ 354 (365)
|.++|+++||+++++...
T Consensus 157 ~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 157 WQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCcEEEEEee
Confidence 999999999998877654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=140.38 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=116.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceEEEe-ccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADAVLI-KCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~i~~-~~vlh~~~~ 273 (365)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 5678999999999999999999865 8999999 889888876 5689999999987 444 5999995 559999854
Q ss_pred -hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc------------hh--------hhhhhhhhhhhcc-C---
Q 017835 274 -EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT------------TE--------TQLFMDMLMMVLV-K--- 328 (365)
Q Consensus 274 -~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~------------~~--------~~~~~d~~~~~~~-~--- 328 (365)
++..++|++++++|+| ||++++.++..++....... .. ......+.+.... +
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 5678999999999999 89988876655433211000 00 0000011111000 1
Q ss_pred --------ccccCHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 329 --------GEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 329 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
.+.++.++|.++|+++||++..+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 1346999999999999998777766566677777764
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=143.60 Aligned_cols=154 Identities=11% Similarity=0.094 Sum_probs=117.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~- 257 (365)
..+++.++ ...++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 44555554 24677899999999999999999986 679999999 888888774 3589999999988 554
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||++ ..++|++++++|+| ||++++.++......... . .....+.-. .....++.++
T Consensus 184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~-~-~~~~~~~~~----~~~~~~s~~~ 251 (312)
T 3vc1_A 184 GAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP-S-KWVSQINAH----FECNIHSRRE 251 (312)
T ss_dssp TCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC-C-HHHHHHHHH----HTCCCCBHHH
T ss_pred CCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch-h-HHHHHHHhh----hcCCCCCHHH
Confidence 599999999999995 47899999999999 999999998776543211 0 111111111 1123568999
Q ss_pred HHHHHHhcCCccceEEEcC
Q 017835 337 WAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~ 355 (365)
|.++++++||+++++....
T Consensus 252 ~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 252 YLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHHHTTTEEEEEEEECH
T ss_pred HHHHHHHCCCEEEEEEeCC
Confidence 9999999999999887753
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-17 Score=147.38 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=118.0
Q ss_pred ccCCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIA-KKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~ 266 (365)
+.++.+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999986 5688999999999 888888875 3459999999988 444 599999999
Q ss_pred ccccCChh-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc-cchh--h---h-hhhhhhhhhccC---ccccCHH
Q 017835 267 VLHNWNDE-ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY-KTTE--T---Q-LFMDMLMMVLVK---GEERNEK 335 (365)
Q Consensus 267 vlh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~-~~~~--~---~-~~~d~~~~~~~~---~~~~t~~ 335 (365)
++||++++ ...++|++++++|+| ||++++.+...+...... .+.. . . ............ ...++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 99999765 445799999999999 999999886654332110 0000 0 0 000000000011 1346999
Q ss_pred HHHHHHHhcCCccceEEEcCC-ceeEEEEe
Q 017835 336 EWAKLFFEAGFSDYKITDVLG-VRSLIEVY 364 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~ 364 (365)
+|.++|+++||+++++..... ....+.++
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~ 302 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIAR 302 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEE
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEe
Confidence 999999999999999987643 34444544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=141.43 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=110.5
Q ss_pred CCCeEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC------------C--C
Q 017835 200 GLNTLVDVGGGT---GTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA------------I--P 257 (365)
Q Consensus 200 ~~~~iLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~------------~--~ 257 (365)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ ..+++++.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 458999999999 999888888899999999999 899998875 47899999999762 2 3
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.+|+|++..+|||+++++...+|++++++|+| ||+|++.+...+. .. ......+.+.........++.++|
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG--LP----AQQKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS--CH----HHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc--hH----HHHHHHHHHHhcCCCCccCCHHHH
Confidence 69999999999999987778999999999999 9999999876532 11 111122222221224566899999
Q ss_pred HHHHHhcCCccce
Q 017835 338 AKLFFEAGFSDYK 350 (365)
Q Consensus 338 ~~ll~~aGf~~~~ 350 (365)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998765
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=138.73 Aligned_cols=141 Identities=18% Similarity=0.283 Sum_probs=111.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCC--CceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh~~ 271 (365)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++||+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 467789999999999999999998 568999999 8888888744 8999999876 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
++++...+|++++++|+| ||++++..+...... . ..+.. ........++.++|.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~---~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTSLY------S---LINFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTSHH------H---HHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcchhH------H---HHHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988889999999999999 999998776432210 1 11111 1112345568999999999999999888
Q ss_pred EEcC
Q 017835 352 TDVL 355 (365)
Q Consensus 352 ~~~~ 355 (365)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-17 Score=134.74 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=116.3
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCCC--CceEEEec
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAIP--PADAVLIK 265 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~~--~~D~i~~~ 265 (365)
+++.++ ..+..+|||||||+|.++..+++.+. +++++|. +.+++.+++ ..++++..+| .+++ .||+|++.
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 334444 56778999999999999999999873 9999999 888888876 6799999999 4333 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.++||+++. ..++++++++|+| ||++++.++.........+ ....++.++|.++++ |
T Consensus 83 ~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--G 139 (170)
T 3i9f_A 83 NSFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIGPP----------------LSIRMDEKDYMGWFS--N 139 (170)
T ss_dssp SCSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSSC----------------GGGCCCHHHHHHHTT--T
T ss_pred cchhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccCch----------------HhhhcCHHHHHHHHh--C
Confidence 999999876 6899999999999 9999999876654332210 012358999999999 9
Q ss_pred CccceEEEcCCceeEEEEe
Q 017835 346 FSDYKITDVLGVRSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~~~~vi~~~ 364 (365)
|+++++.........+.++
T Consensus 140 f~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 140 FVVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEEEEECSSTTEEEEEEE
T ss_pred cEEEEccCCCCceEEEEEe
Confidence 9999999987665555543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=144.57 Aligned_cols=163 Identities=13% Similarity=0.154 Sum_probs=123.0
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++.+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..+++++.+|+.+-...|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 34555565 67889999999999999999999976 89999999 888888774 348999999997653359
Q ss_pred eEEEeccccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccch-----hhhhhhhhhhh-hc
Q 017835 260 DAVLIKCVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTT-----ETQLFMDMLMM-VL 326 (365)
Q Consensus 260 D~i~~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~~-~~ 326 (365)
|+|++..++||+++ +....+|++++++|+| ||++++.+...+......... ....+.++... ..
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999954 5667999999999999 999999988776542110000 00001122111 12
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEcCC
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDVLG 356 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 356 (365)
.++..++.+++.++++++||+++++.....
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 355678999999999999999998877643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-16 Score=139.08 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=112.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..++.+|||||||+|.++..+++.++. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 466789999999999999999999875 9999999 888887764 3569999999977 544 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
++||++ . .++|++++++|+| ||++++.++......... . ....... ......+.++|.++++++||
T Consensus 123 ~l~~~~-~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNIG-F--ERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---E---IEDFWMD--AYPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCCC-H--HHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCCBHHHHHHHHHHTTE
T ss_pred hHhhcC-H--HHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence 999993 3 6789999999999 999999997654433221 1 1111111 11235689999999999999
Q ss_pred ccceEEEcC
Q 017835 347 SDYKITDVL 355 (365)
Q Consensus 347 ~~~~~~~~~ 355 (365)
+++.+...+
T Consensus 189 ~~v~~~~~~ 197 (257)
T 3f4k_A 189 TPTAHFILP 197 (257)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999987765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=136.82 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=110.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC-CceEEEeccccccCChh
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~~~ 274 (365)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.+ +.. .||+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999987 679999999 8888888864478888999877 422 59999999999999987
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC-CccceEEE
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG-FSDYKITD 353 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~ 353 (365)
+...+|++++++|+| ||++++........... . .. .....++.++|.++|+++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~----~----~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRD----K----LA------RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC----T----TS------CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc----c----cc------hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 889999999999999 89888875543322111 0 00 0123459999999999999 99998876
Q ss_pred c
Q 017835 354 V 354 (365)
Q Consensus 354 ~ 354 (365)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=138.71 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=108.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999876 5789999999 888888775 2469999999998433 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
++++....+|++++++|+| ||++++.+.........+ ...++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence 9977779999999999999 999998876544322111 1124889999999999999998
Q ss_pred EEEcCC
Q 017835 351 ITDVLG 356 (365)
Q Consensus 351 ~~~~~~ 356 (365)
+...+.
T Consensus 204 ~~~~~~ 209 (235)
T 3lcc_A 204 VEENPH 209 (235)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 887743
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=147.27 Aligned_cols=145 Identities=19% Similarity=0.296 Sum_probs=114.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhcccC--------------CCeEEEeCCCCC-------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKSN--------------GNLKYVGGNMFE------- 254 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~i~~~~~d~~~------- 254 (365)
..++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4567899999999999999999986 7889999999 8888888752 699999999987
Q ss_pred CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcccc
Q 017835 255 AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEER 332 (365)
Q Consensus 255 ~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 332 (365)
+++ .||+|++..++|++++. ..+|++++++|+| ||+|++.+.......... ............+..+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 229 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSEA------AQQDPILYGECLGGAL 229 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH------HHHCHHHHHTTCTTCC
T ss_pred CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCHh------HhhhHHHhhcccccCC
Confidence 444 49999999999999886 7899999999999 999999987765432210 0111111111234556
Q ss_pred CHHHHHHHHHhcCCccceEEE
Q 017835 333 NEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~ 353 (365)
+.++|.++|+++||+++++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 889999999999999876654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=144.06 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=121.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 34555555 5678899999999999999999886 569999999 888888775 257999999986632469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc----cch-hhhhhhhhhhh-hccCccccC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY----KTT-ETQLFMDMLMM-VLVKGEERN 333 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~----~~~-~~~~~~d~~~~-~~~~~~~~t 333 (365)
|+|++..++||+++++..++|++++++|+| ||++++.++......... +.. ......++... ...++..++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 999999999999877778999999999999 999999998775532100 000 00001111111 113456679
Q ss_pred HHHHHHHHHhcCCccceEEEc
Q 017835 334 EKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.+++.++++++||+++++...
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 999999999999999988765
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=140.16 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=113.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~ 266 (365)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 467889999999999999999998 7889999999 888888775 3679999999987 544 499999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
++||+ +. ..+|++++++|+| ||++++.+.......... . ..+.... .....++.+++.++++++||
T Consensus 123 ~~~~~-~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNI-GF--ERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWMD--AYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGT-CH--HHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCEEHHHHHHHHHHTTE
T ss_pred Cceec-CH--HHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence 99999 43 6789999999999 999999998764433221 1 1111111 11245689999999999999
Q ss_pred ccceEEEcC
Q 017835 347 SDYKITDVL 355 (365)
Q Consensus 347 ~~~~~~~~~ 355 (365)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999988765
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=139.39 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=112.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
+..+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998876 569999999 888888775 2358999999876 443 499999999999
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
|++++....+|++++++|+| ||++++.++...... .++. ......++.++|.++|+++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGV----------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSE----------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCcc----------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 99998778999999999999 999999998765411 0110 012234589999999999999999
Q ss_pred eEEEcCC
Q 017835 350 KITDVLG 356 (365)
Q Consensus 350 ~~~~~~~ 356 (365)
++....+
T Consensus 221 ~~~~~~~ 227 (241)
T 2ex4_A 221 AEERQEN 227 (241)
T ss_dssp EEEECCS
T ss_pred EeeecCC
Confidence 9887643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=137.99 Aligned_cols=149 Identities=13% Similarity=0.168 Sum_probs=109.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCCCCC--CceEEEeccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFEAIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~~~~ 273 (365)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567999999999999999998865 7999999 888888875 2289999999987433 4999999999999988
Q ss_pred hHHHHHHHHHH-HhcccCCCCcEEEEEeeecCCCccCccc--hhhhhhhhhh--hhhccCccccCHHHHHHHHHhcCCcc
Q 017835 274 EECVKILKNCK-KAIAINGKAGKVIIIDIKMESEKADYKT--TETQLFMDML--MMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 274 ~~~~~~L~~i~-~~L~p~~~gG~lli~e~~~~~~~~~~~~--~~~~~~~d~~--~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
+ .++|++++ ++|+| ||++++.++........... ........+. .........++.++|.++|+++||++
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence 7 68999999 99999 99999987654321100000 0000000000 00112345679999999999999999
Q ss_pred ceEEEc
Q 017835 349 YKITDV 354 (365)
Q Consensus 349 ~~~~~~ 354 (365)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 888654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=135.79 Aligned_cols=134 Identities=7% Similarity=0.003 Sum_probs=105.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCC-CC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFE-AI- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~- 256 (365)
..++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++|+.+ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 579999999 889988764 2579999999988 43
Q ss_pred --CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCH
Q 017835 257 --PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNE 334 (365)
Q Consensus 257 --~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~ 334 (365)
..||+|++..++|++++++..+++++++++||| ||+++++....+..... ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 359999999999999988778899999999999 89866555433221000 00112488
Q ss_pred HHHHHHHHhcCCccceEEEc
Q 017835 335 KEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 335 ~e~~~ll~~aGf~~~~~~~~ 354 (365)
+++.+++++ ||+++.+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998777655
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=143.58 Aligned_cols=169 Identities=12% Similarity=0.192 Sum_probs=117.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---C------CCeEEEeCCCCC-CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---N------GNLKYVGGNMFE-AI 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~i~~~~~d~~~-~~ 256 (365)
..+++.++ ....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34444444 33459999999999999999987 578999999 888888875 1 689999999998 54
Q ss_pred C-CceEEEec-cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc-----cch-hhhh-----------
Q 017835 257 P-PADAVLIK-CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY-----KTT-ETQL----------- 317 (365)
Q Consensus 257 ~-~~D~i~~~-~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~-----~~~-~~~~----------- 317 (365)
+ .||+|++. .++|++++++..++|++++++|+| ||+|++..+..+...... .+. ....
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 5 59988865 778888877889999999999999 898888766543221000 000 0000
Q ss_pred --hhhhhhh-----------hccCccccCHHHHHHHHHhcCCccceEEEcCCc------eeEEEEe
Q 017835 318 --FMDMLMM-----------VLVKGEERNEKEWAKLFFEAGFSDYKITDVLGV------RSLIEVY 364 (365)
Q Consensus 318 --~~d~~~~-----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~------~~vi~~~ 364 (365)
...+... .....+.++.++|.++|+++||+++++.+.... ..++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0000000 001122459999999999999999999888522 4566664
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=137.79 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=111.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceEE
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADAV 262 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~i 262 (365)
+.+.++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 36 l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 36 LKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 344444 456789999999999999999998654 9999999 888888875 4789999999987 554 59999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC------------CCccCccchhhhhhhhhhh-----hh
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME------------SEKADYKTTETQLFMDMLM-----MV 325 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~------------~~~~~~~~~~~~~~~d~~~-----~~ 325 (365)
++..++||+++. .++|++++++|+| ||++++...... .......+ ....+++-.. ..
T Consensus 113 ~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (253)
T 3g5l_A 113 LSSLALHYIASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFLG 186 (253)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEETT
T ss_pred EEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeecc
Confidence 999999999775 7899999999999 899888643321 00000000 0000000000 00
Q ss_pred -ccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 326 -LVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 326 -~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
......++.++|.++|+++||+++++...
T Consensus 187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 187 EDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 00112249999999999999999988755
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=139.31 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=115.5
Q ss_pred chHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceE
Q 017835 186 TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADA 261 (365)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~ 261 (365)
....+++.+. ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+
T Consensus 45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 120 (279)
T 3ccf_A 45 YGEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDA 120 (279)
T ss_dssp SCCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEE
T ss_pred HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCE
Confidence 3345566665 56778999999999999999998 6889999999 888888875 5789999999987 444 5999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh-------hccCccccCH
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM-------VLVKGEERNE 334 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~~t~ 334 (365)
|++..++||+++. ..+|++++++|+| ||++++..+....... ....+...... .......++.
T Consensus 121 v~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (279)
T 3ccf_A 121 VFSNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFGGKGNIKY-----ILEALYNALETLGIHNPQALNPWYFPSI 190 (279)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECTTTTHH-----HHHHHHHHHHHHTCCCGGGGCCCCCCCH
T ss_pred EEEcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEecCCcchHH-----HHHHHHHHHHhcCCccccCcCceeCCCH
Confidence 9999999999876 6899999999999 8998887654322110 01111111000 0011234589
Q ss_pred HHHHHHHHhcCCccceEEEc
Q 017835 335 KEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 335 ~e~~~ll~~aGf~~~~~~~~ 354 (365)
++|.++|+++||+++++...
T Consensus 191 ~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 191 GEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEEe
Confidence 99999999999998877654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-16 Score=141.24 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=111.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~vl 268 (365)
..+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 467789999999999999999999984 89999999 888887764 3489999999988 444 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC-----C---CccCccchhhhhhhhhhhhh--ccCccccCHHHHH
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME-----S---EKADYKTTETQLFMDMLMMV--LVKGEERNEKEWA 338 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~-----~---~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~e~~ 338 (365)
||+++. .++|++++++|+| ||++++.++... - +...+.......+..+.... ..+....+..++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCH--HHHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 999887 6899999999999 999999987621 0 00000000011111111110 1233344667899
Q ss_pred HHHHhcCCccceEEEc
Q 017835 339 KLFFEAGFSDYKITDV 354 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~ 354 (365)
++|+++||+.+++...
T Consensus 175 ~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 175 IYLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHHTTCEEEEEEEC
T ss_pred HHHHHcCCCeEEEEEc
Confidence 9999999998877443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=133.37 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=111.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCC-CCC--CceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFE-AIP--PADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~-~~~--~~D~i 262 (365)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 356789999999999999999988 679999999 888888774 1268999999987 544 49999
Q ss_pred EeccccccCChh-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh---------------c
Q 017835 263 LIKCVLHNWNDE-ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV---------------L 326 (365)
Q Consensus 263 ~~~~vlh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---------------~ 326 (365)
++..++||++++ ...++|++++++|+| ||++++.++........ + .......+.... .
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcc
Confidence 999999999765 456899999999999 99999998765432211 0 000000110000 0
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.....++.++|.++|+++||+++++...
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 0123569999999999999999887654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-16 Score=137.74 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=111.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC-CceEEEe
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP-PADAVLI 264 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~-~~D~i~~ 264 (365)
.+++.++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++
T Consensus 24 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 4455555 56778999999999999999999999999999999 888888876 5789999999987 422 4999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--h--ccCccccCHHHHHHH
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--V--LVKGEERNEKEWAKL 340 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~--~~~~~~~t~~e~~~l 340 (365)
..++||+++. ..+|++++++|+| ||++++..+..........+........+... . ......++.++|.++
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 9999999775 6899999999999 89999987643221100000000000000000 0 012345699999999
Q ss_pred HHhcCCccc
Q 017835 341 FFEAGFSDY 349 (365)
Q Consensus 341 l~~aGf~~~ 349 (365)
|+++||++.
T Consensus 177 l~~aGf~v~ 185 (259)
T 2p35_A 177 LSPKSSRVD 185 (259)
T ss_dssp HGGGEEEEE
T ss_pred HHhcCCceE
Confidence 999999743
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-16 Score=133.35 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=103.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-----------CCeEEEeCCCCC-CC--CCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-----------GNLKYVGGNMFE-AI--PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~~~-~~--~~~D~i 262 (365)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 45678999999999999999999988899999999 8888888751 289999999966 33 259999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH----
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA---- 338 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~---- 338 (365)
++..++||+++++..++|++++++|+| ||.+++. +......... . ..............++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~-~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVST-PNKEYNFHYG---N---LFEGNLRHRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEE-EBGGGGGCCC---C---T-----GGGCCTTSBCHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEc-cchhhhhhhc---c---cCcccccccCceeeecHHHHHHHHH
Confidence 999999999998888999999999999 8854443 3221111000 0 000000001122335888888
Q ss_pred HHHHhcCCccce
Q 017835 339 KLFFEAGFSDYK 350 (365)
Q Consensus 339 ~ll~~aGf~~~~ 350 (365)
++++++||++.-
T Consensus 177 ~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 177 KVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHTEEEEE
T ss_pred HHHHHCCcEEEE
Confidence 888899997643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=135.87 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=114.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVL 263 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~ 263 (365)
..+.+.++ ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++++.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34445555 56789999999999999999997 6789999999 8899988876699999999987 554 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE 343 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 343 (365)
+.+++||+++. .++|++++++|+ ||++++.++..+..... + ....+.. .........++.+++. +|++
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRI--W--LYDYFPF-LWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCC--G--GGGTCHH-HHHHHHTSCCHHHHHH-HHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHH--H--HHHHHHH-HhhhhhhhCCCHHHHH-HHHH
Confidence 99999999776 789999999998 59999998754332211 1 0001100 0001123445778888 9999
Q ss_pred cCCccceEEEcC
Q 017835 344 AGFSDYKITDVL 355 (365)
Q Consensus 344 aGf~~~~~~~~~ 355 (365)
+||+++++...+
T Consensus 168 aGF~~v~~~~~~ 179 (261)
T 3ege_A 168 NTKRRVEAIPFL 179 (261)
T ss_dssp HHCSEEEEEECC
T ss_pred cCCCceeEEEec
Confidence 999988887663
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-16 Score=133.58 Aligned_cols=143 Identities=11% Similarity=-0.012 Sum_probs=103.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-----------CCeEEEeCCCCC-CC--CCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-----------GNLKYVGGNMFE-AI--PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~~~-~~--~~~D~i 262 (365)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 45678999999999999999999988899999999 8888888751 289999999866 33 259999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH----
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA---- 338 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~---- 338 (365)
++..++||++++...++|++++++|+| ||.+++........... ...............++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPNIEYNVKFA-------NLPAGKLRHKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBHHHHHHTC------------------CCSCBCHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccCcccchhhc-------ccccccccccccccccCHHHHHHHHH
Confidence 999999999998889999999999999 88555544311000000 0000000001122345888888
Q ss_pred HHHHhcCCccce
Q 017835 339 KLFFEAGFSDYK 350 (365)
Q Consensus 339 ~ll~~aGf~~~~ 350 (365)
++++++||++..
T Consensus 177 ~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 177 KITERFAYNVQF 188 (217)
T ss_dssp HHHHHSSEEEEE
T ss_pred HHHHHcCceEEE
Confidence 888999998643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-16 Score=143.09 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=105.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-----------------------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN----------------------------------- 242 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 242 (365)
.++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 4678999999999999999999999999999999 8888887641
Q ss_pred -----------------------------CCeEEEeCCCCCCC--------CCceEEEeccccccC----ChhHHHHHHH
Q 017835 243 -----------------------------GNLKYVGGNMFEAI--------PPADAVLIKCVLHNW----NDEECVKILK 281 (365)
Q Consensus 243 -----------------------------~~i~~~~~d~~~~~--------~~~D~i~~~~vlh~~----~~~~~~~~L~ 281 (365)
.+|+++.+|+.... ..||+|++..+++++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998632 259999999999665 6777889999
Q ss_pred HHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh--cCCccceEEEc
Q 017835 282 NCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE--AGFSDYKITDV 354 (365)
Q Consensus 282 ~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 354 (365)
+++++|+| ||+|++....+......... ....... ........+++.++|.+ +||+.+++...
T Consensus 205 ~~~~~Lkp---GG~lil~~~~~~~y~~~~~~--~~~~~~~-----~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRP---GGILVLEPQPWSSYGKRKTL--TETIYKN-----YYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEE---EEEEEEECCCHHHHHTTTTS--CHHHHHH-----HHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCC---CcEEEEecCCchhhhhhhcc--cHHHHhh-----hhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999 88777753322111000000 0000100 11222357899999999 99988777654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=140.01 Aligned_cols=215 Identities=7% Similarity=0.009 Sum_probs=138.3
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch-hhhcCCCCChHHH
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK-LLLKDHPLSLAPF 121 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~ 121 (365)
++|..| . +|.|++|||+++++ +++.+++||+.|.+.|+++.. ++ |++++.+. ++...+.....+.
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~-------~~-~~lt~~~~~~l~~~~~~~~~~~ 112 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE-------DG-VKLTEKGEELVAEYGIGKRYDF 112 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS-------SS-SEECHHHHHHHHHHTCCCCCC-
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC-------CC-EEECHHHHHHHHhcCccccccc
Confidence 678888 4 68999999999999 579999999999999999875 35 99998766 4443221111111
Q ss_pred HHHc-cC-ccccc----chhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcc
Q 017835 122 LLAM-LD-PILTK----PWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCK 195 (365)
Q Consensus 122 ~~~~-~~-~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~ 195 (365)
+... .+ ...+. .|..+.+.++... .+. ..+...+ ..++. ...+.+ .. ....
T Consensus 113 ~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~-----~~~-~~~~~~~-----~~~~~--~~~~~l---------~~-~~~~ 169 (373)
T 2qm3_A 113 TCPHCQGKTVDLQAFADLLEQFREIVKDRP-----EPL-HEFDQAY-----VTPET--TVARVI---------LM-HTRG 169 (373)
T ss_dssp -----------CGGGHHHHHHHHHHHTTCC-----CCC-GGGTCCC-----BCHHH--HHHHHH---------HH-HHTT
T ss_pred cchhhcCCCcchhhhHHHHHHHHHHHhcCC-----ccc-hhcCCee-----cCHHH--HHHHHH---------HH-hhcC
Confidence 1000 00 00111 2334444454332 110 0011000 01111 000000 00 0111
Q ss_pred ccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-----CceEEE
Q 017835 196 DVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-----PADAVL 263 (365)
Q Consensus 196 ~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-----~~D~i~ 263 (365)
..++.+|||+| |+|.++..++...|..+++++|+ +.+++.+++ ..+++++.+|+.+++| .||+|+
T Consensus 170 --~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 170 --DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp --CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred --CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEE
Confidence 23568999999 99999999999988889999999 899988875 2389999999988433 499999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+...++... ...+++++.++|+| ||++++++...
T Consensus 247 ~~~p~~~~~---~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 247 TDPPETLEA---IRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp ECCCSSHHH---HHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred ECCCCchHH---HHHHHHHHHHHccc---CCeEEEEEEec
Confidence 987766442 47899999999999 89776666543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=131.35 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=110.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC--CceE
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP--PADA 261 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~--~~D~ 261 (365)
.+...++ ..++.+|||||||+|.++..+++... .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 3444454 45678999999999999999998732 38999999 888888875 3479999999987 444 4999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCcc-Cccch---------hhhhhhh-----hhhhh-
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA-DYKTT---------ETQLFMD-----MLMMV- 325 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~-~~~~~---------~~~~~~d-----~~~~~- 325 (365)
|++..++||+++. ..+|++++++|+| ||++++..+....... ...+. ....++. .....
T Consensus 111 v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (243)
T 3bkw_A 111 AYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK 185 (243)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred EEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence 9999999999865 6899999999999 8999887643210000 00000 0000000 00000
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
......++.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 186 GVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp SCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 01122358999999999999999988764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.5e-16 Score=139.10 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=110.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C-CC--CceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A-IP--PADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~~--~~D~i~~~~v 267 (365)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999988 679999999 888888875 2689999999987 3 33 5999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--------hccCccccCHHHHHH
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--------VLVKGEERNEKEWAK 339 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~~~~t~~e~~~ 339 (365)
+||+++. ..+|++++++|+| ||++++..+......... .....+..... .......++.++|.+
T Consensus 146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL 217 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence 9999887 6899999999999 899998876442211000 00000000000 001234569999999
Q ss_pred HHHhcCCccceEEEcCC
Q 017835 340 LFFEAGFSDYKITDVLG 356 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~~ 356 (365)
+|+++||+++++.....
T Consensus 218 ~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 218 WLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp HHHHTTCEEEEEEEESS
T ss_pred HHHHCCCceeeeeeEEE
Confidence 99999999998887643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=126.54 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=111.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-Cc
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-~~ 259 (365)
.+.+.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .|
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 4455555 456679999999999999999987 679999999 888888764 2479999999987 444 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||+++++..++|++++++|+| ||.+++++.......... ......++.+++.+
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHH
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHH
Confidence 999999999999977778999999999999 999999887665432210 01123358889999
Q ss_pred HHHhcCCccceEEEc
Q 017835 340 LFFEAGFSDYKITDV 354 (365)
Q Consensus 340 ll~~aGf~~~~~~~~ 354 (365)
+|++ |++++....
T Consensus 161 ~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 161 YYEG--WERVKYNED 173 (199)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CeEEEeccc
Confidence 9987 988877544
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=132.12 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=105.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecc-cccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKC-VLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~-vlh~ 270 (365)
+..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 6789999999999999999988 568999999 888888775 2289999999987 444 599999998 9999
Q ss_pred CCh-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCcc---Cccch---------hh------hhhhhhhhhhc-----
Q 017835 271 WND-EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKA---DYKTT---------ET------QLFMDMLMMVL----- 326 (365)
Q Consensus 271 ~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~---~~~~~---------~~------~~~~d~~~~~~----- 326 (365)
+++ ++..++|++++++|+| ||.+++..+....... ...+. .. .....+.+...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY 191 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence 943 5678999999999999 8888763322110000 00000 00 00000000000
Q ss_pred ------cCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 327 ------VKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 327 ------~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
...+.++.++|.++|+++||++++++..
T Consensus 192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 0124569999999999999999998765
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=131.92 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=111.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-----C-CC-ce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-----I-PP-AD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-----~-~~-~D 260 (365)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. . .. ||
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3444454 456699999999999999999988 679999999 88999988778888888887651 1 23 99
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh------ccCccccCH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV------LVKGEERNE 334 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~t~ 334 (365)
+|++..++| ..+. ..+|++++++|+| ||++++.++......... +.. .+....... ......++.
T Consensus 119 ~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3e8s_A 119 LICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQD--GWREESFAGFAGDWQPMPWYFRTL 189 (227)
T ss_dssp EEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CSC--EEEEECCTTSSSCCCCEEEEECCH
T ss_pred EEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-ccc--ccchhhhhccccCcccceEEEecH
Confidence 999999999 5555 6899999999999 899999887553322110 000 000000000 011234599
Q ss_pred HHHHHHHHhcCCccceEEEc
Q 017835 335 KEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 335 ~e~~~ll~~aGf~~~~~~~~ 354 (365)
++|.++|+++||+++++...
T Consensus 190 ~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 190 ASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp HHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHcCCeEEEEecC
Confidence 99999999999999988763
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=134.65 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=113.5
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH------HHHhccc-------CCCeEEEeCC-C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PH------VVADLKS-------NGNLKYVGGN-M 252 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~-------~~~i~~~~~d-~ 252 (365)
.+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ ..+++++.+| +
T Consensus 34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 4555555 6778999999999999999999995 7789999999 44 7777664 2589999998 4
Q ss_pred CC---CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhh-hhhhhhhh--h
Q 017835 253 FE---AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTET-QLFMDMLM--M 324 (365)
Q Consensus 253 ~~---~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~d~~~--~ 324 (365)
.. +++ .||+|++..++||++++. .+++.++++++| ||++++.+...+...... .... ........ .
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAI 185 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhc
Confidence 43 333 499999999999999874 477777788888 999999998876543211 0000 00000000 0
Q ss_pred --h--ccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 325 --V--LVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 325 --~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
. ......++.++|.++++++||+++++...
T Consensus 186 ~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 186 APSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp SCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 0 01123569999999999999999887765
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-15 Score=130.12 Aligned_cols=95 Identities=24% Similarity=0.419 Sum_probs=80.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecc-cc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKC-VL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~-vl 268 (365)
+.+..+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 345689999999999999998876 79999999 888888775 3579999999987 444 599999986 99
Q ss_pred ccC-ChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 269 HNW-NDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 269 h~~-~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
||+ +.++..++|++++++|+| ||++++
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~ 135 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTD---GGKLLF 135 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence 998 456678999999999999 888876
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-15 Score=127.76 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=111.1
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---CCC--Cce
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---AIP--PAD 260 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~--~~D 260 (365)
...+++.++ .+..+|||||||+|.++..+++. + .+++++|. +.+++.+++ ...+++.+|+.+ +++ .||
T Consensus 22 ~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 22 NPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKE-KLDHVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp CHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHT-TSSEEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHH-hCCcEEEcchhhcCCCCCCCccC
Confidence 344555443 56789999999999999999988 4 89999999 888888874 234788899875 333 499
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhh---hhhhccCccccCHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDM---LMMVLVKGEERNEKEW 337 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~t~~e~ 337 (365)
+|++..++||++++ ..+|++++++|+| ||.+++..+........ .......+.. ..........++.++|
T Consensus 96 ~v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (230)
T 3cc8_A 96 CVIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPNVSHISVL--APLLAGNWTYTEYGLLDKTHIRFFTFNEM 168 (230)
T ss_dssp EEEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEECTTSHHHH--HHHHTTCCCCBSSSTTBTTCCCCCCHHHH
T ss_pred EEEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCCcchHHHH--HHHhcCCceeccCCCCCcceEEEecHHHH
Confidence 99999999999887 6899999999999 89999877654221100 0000000000 0000112245699999
Q ss_pred HHHHHhcCCccceEEEcC
Q 017835 338 AKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~~ 355 (365)
.++++++||+++++....
T Consensus 169 ~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 169 LRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHcCCeEEEEEecc
Confidence 999999999999887753
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-14 Score=119.65 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=106.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEec-cccccC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIK-CVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~-~vlh~~ 271 (365)
.++..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. .++|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 357789999999999999999987 579999999 888888876 5679999999987 554 49999998 899999
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
+++....+|++++++|+| ||.+++..... ..++.+++.++++++||+++++
T Consensus 122 ~~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 122 AEDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHHHHHTEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHHHHcCCEEeee
Confidence 888889999999999999 88888754311 1147889999999999999887
Q ss_pred EEc
Q 017835 352 TDV 354 (365)
Q Consensus 352 ~~~ 354 (365)
...
T Consensus 173 ~~~ 175 (195)
T 3cgg_A 173 FES 175 (195)
T ss_dssp ESS
T ss_pred ecc
Confidence 654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=132.38 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=109.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC-------CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP-------PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~-------~~D~i~~~ 265 (365)
..+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 46678999999999999999999977 8999999 888888875 4589999999988 222 38999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhh----hhhhhhhhhhccCccccCHHHHHHHH
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTET----QLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~----~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
.++||+++++..++|++++++|+| ||+++++++..++.......... .......+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999987789999999999999 99999999865532110000000 00000000000111235899999999
Q ss_pred HhcCCccceEEEc
Q 017835 342 FEAGFSDYKITDV 354 (365)
Q Consensus 342 ~~aGf~~~~~~~~ 354 (365)
+||++++....
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99998775443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=131.03 Aligned_cols=145 Identities=13% Similarity=0.146 Sum_probs=105.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 467789999999999999999987 579999999 888888764 3689999999977 544 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc----CccccCHHHHHHHHHhc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV----KGEERNEKEWAKLFFEA 344 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~t~~e~~~ll~~a 344 (365)
|++++. ..+|++++++|+| ||.+++. ...++ ..........+..+...... ....++.+++.++|+++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 999875 6899999999999 8988887 22211 01000000111111111000 12345889999999999
Q ss_pred CCccceEE
Q 017835 345 GFSDYKIT 352 (365)
Q Consensus 345 Gf~~~~~~ 352 (365)
||+++.+.
T Consensus 187 Gf~~~~~~ 194 (263)
T 2yqz_A 187 GLKPRTRE 194 (263)
T ss_dssp TCCCEEEE
T ss_pred CCCcceEE
Confidence 99977653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=126.32 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=103.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChhH
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDEE 275 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~ 275 (365)
++.+|||||||+|.++..++.. +++|. +.+++.+++. +++++.+|+.+ +.+ .||+|++..++||+++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 3789999999999999888654 89999 8888888765 89999999877 444 49999999999999876
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--hccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 276 CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--VLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 276 ~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
.++|++++++|+| ||.+++.++...... ...+...... .......++.++|.++|+++||+++++..
T Consensus 119 -~~~l~~~~~~L~p---gG~l~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 119 -ERALKEAYRILKK---GGYLIVGIVDRESFL-------GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp -HHHHHHHHHHEEE---EEEEEEEEECSSSHH-------HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -HHHHHHHHHHcCC---CcEEEEEEeCCccHH-------HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 6899999999999 899998876432210 0001110000 01123456999999999999999988876
Q ss_pred c
Q 017835 354 V 354 (365)
Q Consensus 354 ~ 354 (365)
.
T Consensus 188 ~ 188 (219)
T 1vlm_A 188 T 188 (219)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=128.98 Aligned_cols=133 Identities=10% Similarity=-0.006 Sum_probs=105.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------------------CCCeEEEeCCCCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------------------NGNLKYVGGNMFE 254 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~~ 254 (365)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999987 679999999 888888753 1579999999998
Q ss_pred -CC---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCcc
Q 017835 255 -AI---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGE 330 (365)
Q Consensus 255 -~~---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 330 (365)
+. ..||+|++..++|++++++...++++++++|+| ||+++++....+..... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 43 359999999999999988888999999999999 89987766554321100 0001
Q ss_pred ccCHHHHHHHHHhcCCccceEEEc
Q 017835 331 ERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 331 ~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..+.+++.++|+. +|+++.+...
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2488999999987 5988776543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=132.32 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=97.2
Q ss_pred cCCCeEEEecCCccHHHH----HHHHHCCCCeE--EEeec-hHHHHhccc-------CCCeEE--EeCCCCC-C------
Q 017835 199 EGLNTLVDVGGGTGTLAS----AIAKKFPHIEC--TVFDQ-PHVVADLKS-------NGNLKY--VGGNMFE-A------ 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~-------~~~i~~--~~~d~~~-~------ 255 (365)
.++.+|||||||+|.++. .++..+|+.++ +++|. +.|++.+++ ..++.+ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 456799999999997654 44556788854 99999 888887764 134544 4555432 1
Q ss_pred CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc--cCccc
Q 017835 256 IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL--VKGEE 331 (365)
Q Consensus 256 ~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~ 331 (365)
++ .||+|++.+++||+++. .+.|++++++||| ||++++.+..... . +. ..+........ .....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~-~----~~--~~~~~~~~~~~~~~~~~~ 198 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGSS-G----WD--KLWKKYGSRFPQDDLCQY 198 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTTS-H----HH--HHHHHHGGGSCCCTTCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC---CcEEEEEEecCCc-c----HH--HHHHHHHHhccCCCcccC
Confidence 22 49999999999999987 6789999999999 9999998653211 1 10 01111110000 01245
Q ss_pred cCHHHHHHHHHhcCCccceE
Q 017835 332 RNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~~~ 351 (365)
++.++|.++|+++||+++..
T Consensus 199 ~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 199 ITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CCHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHCCCceEEE
Confidence 68999999999999997763
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=124.51 Aligned_cols=150 Identities=12% Similarity=0.014 Sum_probs=107.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
..+..+|||||||+|..+..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 356789999999999985555444 4679999999 888888764 4679999999987 554 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhh-hhccCccccCHHHHHHHHHhcCCc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLM-MVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
||++.++..+++++++++|+| ||++++.+...++.............+.... .....+..++.+++.++|++.||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 999877789999999999999 8999998887654321100000000010000 000123456999999999999987
Q ss_pred cceE
Q 017835 348 DYKI 351 (365)
Q Consensus 348 ~~~~ 351 (365)
..+.
T Consensus 177 ~~~~ 180 (209)
T 2p8j_A 177 FKED 180 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=122.04 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=100.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEec
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIK 265 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~ 265 (365)
.++..+.. ..+..+|||||||+|.++..+. .+++++|+.+. +++++.+|+.+ +++ .||+|++.
T Consensus 57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 34444431 3567899999999999988772 68999998332 67888999887 554 49999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.++|+ .+. ..+|++++++|+| ||.+++.+... ...+.++|.++++++|
T Consensus 123 ~~l~~-~~~--~~~l~~~~~~L~~---gG~l~i~~~~~--------------------------~~~~~~~~~~~l~~~G 170 (215)
T 2zfu_A 123 LSLMG-TNI--RDFLEEANRVLKP---GGLLKVAEVSS--------------------------RFEDVRTFLRAVTKLG 170 (215)
T ss_dssp SCCCS-SCH--HHHHHHHHHHEEE---EEEEEEEECGG--------------------------GCSCHHHHHHHHHHTT
T ss_pred hhccc-cCH--HHHHHHHHHhCCC---CeEEEEEEcCC--------------------------CCCCHHHHHHHHHHCC
Confidence 99984 444 7899999999999 99999987421 0117899999999999
Q ss_pred CccceEEEcCCceeEEEEeC
Q 017835 346 FSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 346 f~~~~~~~~~~~~~vi~~~~ 365 (365)
|+++++....+...++.++|
T Consensus 171 f~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 171 FKIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEEECCSTTCEEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEEe
Confidence 99988766666666666653
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=128.46 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=85.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCC-C--C------CCc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE-A--I------PPA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~--~------~~~ 259 (365)
.+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ + . ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578999999999999999999987 8999999999 888888864 4699999999987 3 2 259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+|++..++||+ +. ..+|++++++|+| ||.|++.+..
T Consensus 115 D~V~~~~~l~~~-~~--~~~l~~~~~~Lkp---gG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-DF--EKFQRSAYANLRK---DGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-CH--HHHHHHHHHHEEE---EEEEEEEEEE
T ss_pred eEEeHhhHHHHh-CH--HHHHHHHHHhcCC---CcEEEEEecC
Confidence 999999999999 44 7899999999999 9999885543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=127.45 Aligned_cols=98 Identities=11% Similarity=0.204 Sum_probs=85.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~ 274 (365)
....+|||||||+|.++..|++.+ .+++++|+ +.+++.+++..+++++.+|+.+ +++ .||+|++..++|+++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~- 114 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL- 114 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH-
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH-
Confidence 445799999999999999999875 58999999 8999999888899999999987 665 4999999999987764
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.+++++++++||| ||+|+++.....
T Consensus 115 --~~~~~e~~rvLkp---gG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 --DRFWAELRRVARP---GAVFAAVTYGLT 139 (257)
T ss_dssp --HHHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred --HHHHHHHHHHcCC---CCEEEEEECCCC
Confidence 4689999999999 999999876543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-15 Score=135.06 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=100.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc---C------------------------------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS---N------------------------------ 242 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---~------------------------------ 242 (365)
..++.+|||||||+|.++..++.. +. +++++|+ +.+++.+++ .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 346789999999999887655544 33 6999999 888887653 0
Q ss_pred --CCeE-EEeCCCCCC-------CCCceEEEeccccccCC--hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc
Q 017835 243 --GNLK-YVGGNMFEA-------IPPADAVLIKCVLHNWN--DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY 310 (365)
Q Consensus 243 --~~i~-~~~~d~~~~-------~~~~D~i~~~~vlh~~~--~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~ 310 (365)
.++. ++.+|+.+. .+.||+|+++.+|||.. .++..++|++++++||| ||++++.+........
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~~~-- 205 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYM-- 205 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEE--
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCccce--
Confidence 1233 889999872 23599999999999853 35567899999999999 9999998654221100
Q ss_pred cchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 311 KTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 311 ~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..- .......++.++|.++|+++||+++++...
T Consensus 206 --------~g~---~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 206 --------VGK---REFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp --------ETT---EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --------eCC---eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 000 001122358999999999999999888764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-14 Score=126.30 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=109.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~ 259 (365)
..+++.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 44555555 457889999999999999999988 569999999 888887775 2389999999987 334 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
|+|++..++||++++....+|++++++|+| ||.++++..........+ ......++.+++.+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE 247 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence 999999999999998889999999999999 899888776554432210 00122347788888
Q ss_pred HHHhcCCccceEE
Q 017835 340 LFFEAGFSDYKIT 352 (365)
Q Consensus 340 ll~~aGf~~~~~~ 352 (365)
+++. |+++...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 8865 8877664
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=132.40 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=88.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE-A 255 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~-~ 255 (365)
..+...++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.+..+|+.+ +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 33444444 456789999999999999999998 459999999 888888753 2578889999877 4
Q ss_pred ---CC--CceEEEec-cccccCCh-----hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 256 ---IP--PADAVLIK-CVLHNWND-----EECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 256 ---~~--~~D~i~~~-~vlh~~~~-----~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
++ .||+|++. +++||+++ ++..++|++++++|+| ||++++..+.
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 177 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN 177 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 34 59999998 99999988 6678999999999999 8998887643
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=128.84 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=104.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CC-------------------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NG------------------------------- 243 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~------------------------------- 243 (365)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999998888755 58999999 888888764 22
Q ss_pred -Ce-EEEeCCCCCC-C------CCceEEEeccccccCCh--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc
Q 017835 244 -NL-KYVGGNMFEA-I------PPADAVLIKCVLHNWND--EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT 312 (365)
Q Consensus 244 -~i-~~~~~d~~~~-~------~~~D~i~~~~vlh~~~~--~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 312 (365)
++ +++.+|+.+. . ..||+|++..++|+++. ++...+|++++++|+| ||++++.+...... +
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~-----~ 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSSY-----Y 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-----E
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCce-----E
Confidence 17 8999999872 1 24999999999995543 2558899999999999 89999888533210 0
Q ss_pred hhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 313 TETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 313 ~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
... + ........+.++|.++|+++||+++++...+
T Consensus 206 ~~~----~----~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 MIG----E----QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp EET----T----EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EcC----C----ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000 0 0011234588999999999999999887664
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=120.77 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=107.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh 269 (365)
..++.+|||||||+|.++..+++ .+..+++++|. +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 35678999999999999999876 46679999999 888888774 2349999999988544 599999988776
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
+ ...++++++++|+| ||++++.+.... +.+++.++++++||+++
T Consensus 137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 4 36789999999999 899888654321 46778899999999999
Q ss_pred eEEEcCCceeEEEEeC
Q 017835 350 KITDVLGVRSLIEVYP 365 (365)
Q Consensus 350 ~~~~~~~~~~vi~~~~ 365 (365)
++....++.+++.-+|
T Consensus 181 ~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 181 LKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EeeccCCEEEEEEecc
Confidence 9998888888887654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=128.90 Aligned_cols=154 Identities=10% Similarity=0.011 Sum_probs=109.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC-C--CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI-P--PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-~--~~D~i~~~ 265 (365)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 367789999999999999998876 4569999999 888888775 1468999999987 54 2 49999999
Q ss_pred ccccc--CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc--------cCccc----------hh-hhhhhhhhhh
Q 017835 266 CVLHN--WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK--------ADYKT----------TE-TQLFMDMLMM 324 (365)
Q Consensus 266 ~vlh~--~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~--------~~~~~----------~~-~~~~~d~~~~ 324 (365)
.++|| .+.++..++|++++++|+| ||++++..+...... ....+ .. ....+.+...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99998 5666778999999999999 899998875432100 00000 00 0000000000
Q ss_pred h---ccCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 325 V---LVKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 325 ~---~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
. ......++.++|.++++++||+++++....
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 0 011244689999999999999999887653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-14 Score=134.37 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=108.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC------CC--CC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE------AI--PP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~------~~--~~ 258 (365)
..+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. ++ ..
T Consensus 97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 45556665 567889999999999999999987 569999999 8888888753 34443332222 11 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++.+++||+++. ..+|++++++|+| ||++++..+...... ....+..+. ..+...++.++|.
T Consensus 172 fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~------~~~~~~~~~---~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDIV------AKTSFDQIF---DEHFFLFSATSVQ 237 (416)
T ss_dssp EEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHHH------HHTCGGGCS---TTCCEECCHHHHH
T ss_pred EEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHhh------hhcchhhhh---hhhhhcCCHHHHH
Confidence 9999999999999876 7899999999999 888888655432110 000011110 1233456999999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998865
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=122.94 Aligned_cols=142 Identities=19% Similarity=0.243 Sum_probs=102.3
Q ss_pred cCCCeEEEecCCc--cHHHHHHH-HHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---------CCc
Q 017835 199 EGLNTLVDVGGGT--GTLASAIA-KKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---------PPA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---------~~~ 259 (365)
.+..+|||||||+ +.++..++ +..|+.+++++|. |.|++.++. ..+++++.+|+.++. ..+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3568999999997 44445544 4689999999999 999999875 237999999998731 125
Q ss_pred e-----EEEeccccccCChhH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccC
Q 017835 260 D-----AVLIKCVLHNWNDEE-CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERN 333 (365)
Q Consensus 260 D-----~i~~~~vlh~~~~~~-~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t 333 (365)
| .++++.+|||+++++ ...+|++++++|+| ||.|++.+...+.... ......+.+.........||
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQ-----EVGRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHH-----HHHHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHH-----HHHHHHHHHHhcCCCCccCC
Confidence 5 688999999999875 47899999999999 9999988876542111 11112222222112345689
Q ss_pred HHHHHHHHHhcCCccce
Q 017835 334 EKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~ 350 (365)
.+|+.++|. ||++++
T Consensus 229 ~~ei~~~f~--Glelve 243 (277)
T 3giw_A 229 HAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHHTTT--TSEECT
T ss_pred HHHHHHHhC--CCcccC
Confidence 999999994 998543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-13 Score=118.56 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=81.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEec-ccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIK-CVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~-~vl 268 (365)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. ..+
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence 356789999999999999999987 679999999 888888774 3479999999987 444 59999986 566
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++++.++..++|++++++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 777777789999999999999 7877653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=118.58 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=99.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEeccccccCCh
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~ 273 (365)
++.+|||||||+|.++..+ +. +++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++||+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999998877 45 8999999 888888876 4689999999987 544 4999999999999987
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh-hhhccCccccCHHHHHHHHHhcCCccceEE
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML-MMVLVKGEERNEKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 352 (365)
. .++|++++++|+| ||++++.++..... +.......... .......+.++.+++.++|+ | ++++.
T Consensus 111 ~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G--~~~~~ 176 (211)
T 2gs9_A 111 V--ERVLLEARRVLRP---GGALVVGVLEALSP-----WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P--PEAEG 176 (211)
T ss_dssp H--HHHHHHHHHHEEE---EEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S--CSEEE
T ss_pred H--HHHHHHHHHHcCC---CCEEEEEecCCcCc-----HHHHHHHHhhccCccccccccCCHHHHHHHhc--C--cceeE
Confidence 6 6899999999999 89999987654321 10000000000 00011245579999999998 7 44443
Q ss_pred E
Q 017835 353 D 353 (365)
Q Consensus 353 ~ 353 (365)
.
T Consensus 177 ~ 177 (211)
T 2gs9_A 177 E 177 (211)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-13 Score=115.11 Aligned_cols=134 Identities=12% Similarity=0.049 Sum_probs=102.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
.+. +|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++. +.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CC
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hh
Confidence 344 9999999999999999887 569999999 888888775 3489999999987 544 59999984 34
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
|++.++...+|++++++|+| ||.+++..+........ .. ........++.+++.++|+ ||+++
T Consensus 104 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQYN---------TG---GPKDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGGT---------SC---CSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccCC---------CC---CCCcceeecCHHHHHHHhc--CceEE
Confidence 56767778999999999999 89999988754332110 00 0001123469999999999 99988
Q ss_pred eEEEc
Q 017835 350 KITDV 354 (365)
Q Consensus 350 ~~~~~ 354 (365)
++...
T Consensus 167 ~~~~~ 171 (202)
T 2kw5_A 167 IANNL 171 (202)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-13 Score=116.22 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=101.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC-----CC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA-----IP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~-----~~-~~D~i~~~~ 266 (365)
..++.+|||||||+|.++..+++.++..+++++|. +.+++.+++ ..++.++.+|+.++ .+ .||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 56778999999999999999999988789999999 888876653 47899999999862 22 599998
Q ss_pred ccccCChh-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 267 VLHNWNDE-ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 267 vlh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
|+++++ ....+|+++.+.|+| ||++++. .......... ... ....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~---~~~--------------~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTK---DPK--------------EIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSS---CHH--------------HHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCC---CHH--------------HhhHHHHH-HHHHCC
Confidence 455443 346679999999999 8998887 3221111110 000 01236777 899999
Q ss_pred CccceEEEcCCc---eeEEEEe
Q 017835 346 FSDYKITDVLGV---RSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~~ 364 (365)
|+++++.....+ +.++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999998887544 5555554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-13 Score=113.74 Aligned_cols=120 Identities=13% Similarity=0.277 Sum_probs=97.9
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---CC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---PP 258 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~~ 258 (365)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|. +.+++.+++ .++++++.+|+.+.. +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3445555 67789999999999999999999999999999999 888888875 368999999997732 46
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++...++ ...++++++.++|+| ||++++..... .+.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~----------------------------~~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTL----------------------------DTLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBH----------------------------HHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEeccc----------------------------ccHHHHH
Confidence 99999988775 336889999999999 89998865321 0356778
Q ss_pred HHHHhcCC
Q 017835 339 KLFFEAGF 346 (365)
Q Consensus 339 ~ll~~aGf 346 (365)
++++++||
T Consensus 153 ~~l~~~g~ 160 (204)
T 3e05_A 153 EFLEDHGY 160 (204)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 88899998
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-14 Score=121.49 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=84.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
..+..+|||||||+|.++..+++.+ .+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999884 58999999 888888875 3589999999988333 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 271 WND-EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 271 ~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+++ +...++|++++++|+| ||.+++..+
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 986 4556899999999999 898888765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-13 Score=111.05 Aligned_cols=119 Identities=15% Similarity=0.203 Sum_probs=97.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC--CceEEEeccccccCChh-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP--PADAVLIKCVLHNWNDE- 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~~~~~- 274 (365)
.++.+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|+++..+|+.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 456799999999999999999886 9999999 888887 5789999999998655 49999999888865443
Q ss_pred ------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 275 ------ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 275 ------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
....+++++.+.+ | ||++++.+... .+.+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 3467889999999 8 89999877421 14678899999999998
Q ss_pred ceEEEcC
Q 017835 349 YKITDVL 355 (365)
Q Consensus 349 ~~~~~~~ 355 (365)
..+....
T Consensus 144 ~~~~~~~ 150 (170)
T 3q87_B 144 RILKVRK 150 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 8887663
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-14 Score=127.83 Aligned_cols=139 Identities=15% Similarity=0.160 Sum_probs=97.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CC---------------------------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NG--------------------------------- 243 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--------------------------------- 243 (365)
++.+|||||||+|.++ .++...+..+++++|+ +.+++.+++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445669999999 888886654 10
Q ss_pred -CeEEEeCCCCC--C-----CC--CceEEEeccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc
Q 017835 244 -NLKYVGGNMFE--A-----IP--PADAVLIKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK 311 (365)
Q Consensus 244 -~i~~~~~d~~~--~-----~~--~~D~i~~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~ 311 (365)
.++++.+|+.+ + ++ .||+|++..++|++++. +..++|++++++||| ||+|++.+.......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~~---- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWY---- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEE----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcceE----
Confidence 14566778876 2 22 29999999999985533 558899999999999 999999864321100
Q ss_pred chhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 312 TTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 312 ~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
. ..+ .......++.++|.++|+++||+++++...+
T Consensus 223 --~---~~~----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 223 --L---AGE----ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp --E---ETT----EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --E---cCC----eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0 000 0011234589999999999999998876553
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=117.68 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=105.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEecc---
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKC--- 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~--- 266 (365)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.++.+ .||+|++..
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 4567999999999999999999999999999999 888888774 2579999999988543 599999973
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc
Q 017835 267 ----------VLHNWND----------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL 326 (365)
Q Consensus 267 ----------vlh~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 326 (365)
+++|.+. .....+++++.+.|+| ||++++...
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------------------------
Confidence 4444331 3447899999999999 787777411
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEEe
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEVY 364 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 364 (365)
..+.+++.++++++||+.++++.. .+...++.++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 014678899999999998887654 5666666665
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=118.85 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=98.4
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh----ccc------CCCeEEEeCCCCC-CCC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVAD----LKS------NGNLKYVGGNMFE-AIP 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~i~~~~~d~~~-~~~ 257 (365)
.+..+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ ..+++++.+|+.+ +++
T Consensus 19 ~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 96 (218)
T 3mq2_A 19 EFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL 96 (218)
T ss_dssp HHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC
T ss_pred HHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC
Confidence 344444 56788999999999999999999999999999999 776654 221 3589999999988 444
Q ss_pred -CceEEEe---cccc--ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccc
Q 017835 258 -PADAVLI---KCVL--HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEE 331 (365)
Q Consensus 258 -~~D~i~~---~~vl--h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 331 (365)
+.|.|.+ ...+ ||++++ ..+|++++++||| ||++++.-....-.... . ...+.. .....
T Consensus 97 ~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~---~~~~~~----~~~~~ 161 (218)
T 3mq2_A 97 SGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSV---P---EVGEHP----EPTPD 161 (218)
T ss_dssp CCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBC---G---GGTTCC----CCCHH
T ss_pred CCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEeccccccccc---c---ccccCC----ccchH
Confidence 2365552 2223 255555 6889999999999 88888833211110000 0 000000 01111
Q ss_pred cCHHHHHHHHHhcCCccceEEEcC
Q 017835 332 RNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
+..+++.++++++||++.++....
T Consensus 162 ~~~~~l~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 162 SADEWLAPRYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCceeeeccc
Confidence 234568889999999998876653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-14 Score=124.45 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=93.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC---CCC--CceEEEe--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE---AIP--PADAVLI-- 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~~--~~D~i~~-- 264 (365)
..++.+|||||||+|..+..+++..|. +++++|+ +.+++.+++ ..+++++.+|... +++ .||.|++
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEee
Confidence 356789999999999999999887664 8999999 999998875 4578888888754 344 4898875
Q ss_pred ---ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 265 ---KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 265 ---~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
...++|+.+. ..++++++|+||| ||++++.+......... ..++ .......+.+...|
T Consensus 137 ~~~~~~~~~~~~~--~~~~~e~~rvLkP---GG~l~f~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~L 197 (236)
T 3orh_A 137 YPLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNLTSWGELMK-------SKYS-------DITIMFEETQVPAL 197 (236)
T ss_dssp CCCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCHHHHHHHTT-------TTCS-------CHHHHHHHHTHHHH
T ss_pred eecccchhhhcch--hhhhhhhhheeCC---CCEEEEEecCCchhhhh-------hhhh-------hhhhhhHHHHHHHH
Confidence 4445555554 7899999999999 89887755322111000 0000 00111345667788
Q ss_pred HhcCCccceEE
Q 017835 342 FEAGFSDYKIT 352 (365)
Q Consensus 342 ~~aGf~~~~~~ 352 (365)
.++||+++.+.
T Consensus 198 ~eaGF~~~~i~ 208 (236)
T 3orh_A 198 LEAGFRRENIR 208 (236)
T ss_dssp HHHTCCGGGEE
T ss_pred HHcCCeEEEEE
Confidence 89999976553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=117.84 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=92.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhc---cc------CCCeEEEeCCCCCC-CCCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ--PHVVADL---KS------NGNLKYVGGNMFEA-IPPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~------~~~i~~~~~d~~~~-~~~~D~i~~~~ 266 (365)
.++.+|||||||+|.++..+++..|+.+++++|+ +.+++.| ++ ..++.++.+|+.+- ...+|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 5678999999999999999999899999999998 3454444 43 35799999998762 21235554444
Q ss_pred ccccCChhH------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 267 VLHNWNDEE------CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 267 vlh~~~~~~------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
+.+.|+... ...+|++++++||| ||++++....... ....++ ...... .........+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~-~~~~~~----~~~~~~---~~~~~~~~~~el~~~ 171 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDS-YEEAEI----KKRGLP---LLSKAYFLSEQYKAE 171 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEecccc-chhchh----hhcCCC---CCChhhcchHHHHHH
Confidence 443333210 14689999999999 8999884433322 110000 000000 000011122469999
Q ss_pred HHhcCCccceEEEcC
Q 017835 341 FFEAGFSDYKITDVL 355 (365)
Q Consensus 341 l~~aGf~~~~~~~~~ 355 (365)
++++||++..+...+
T Consensus 172 l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 172 LSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCCeeeeeecC
Confidence 999999988876654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-12 Score=108.12 Aligned_cols=141 Identities=15% Similarity=0.270 Sum_probs=106.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CC--CeEEEeCCCCCCCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NG--NLKYVGGNMFEAIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~i~~~~~d~~~~~~- 257 (365)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. +++++.+|+.+..+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 34555555 567789999999999999999988 779999999 888887764 23 49999999988544
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++|+ ..+....+++++++.|+| ||.+++...... ...+
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 165 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKS 165 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHH
Confidence 5999999888774 445567899999999999 899888765320 1234
Q ss_pred HHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 337 WAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+.+.+++. |..+++......+.++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 66667776 66667766665666666654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=111.88 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=100.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC----C--CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA----I--PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~----~--~~~D~i~~~ 265 (365)
++++.+|||+|||+|.++..+++. .|+-+++++|. +.+++.+++ ..++..+.+|...+ . ..+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 789999999999999999999997 68899999999 888887764 56899999988763 1 148888753
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
+++..+ ...+++++++.||| ||+++|.......+...+ .....++-.+.|+++|
T Consensus 155 --~~~~~~--~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~p-------------------~~~~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 --VAQPEQ--AAIVVRNARFFLRD---GGYMLMAIKARSIDVTTE-------------------PSEVYKREIKTLMDGG 208 (233)
T ss_dssp --CCCTTH--HHHHHHHHHHHEEE---EEEEEEEEECCHHHHHTC-------------------CCHHHHHHHHHHHHTT
T ss_pred --ccCChh--HHHHHHHHHHhccC---CCEEEEEEecccCCCCCC-------------------hHHHHHHHHHHHHHCC
Confidence 222233 36789999999999 999988754322211110 0001123345678999
Q ss_pred CccceEEEcCC---ceeEEEEe
Q 017835 346 FSDYKITDVLG---VRSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~---~~~vi~~~ 364 (365)
|++++...+.. .+.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 99999888744 25555543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=116.29 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=80.8
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHHhcccC----------------------------
Q 017835 200 GLNTLVDVGGGTGT----LASAIAKKFP----HIECTVFDQ-PHVVADLKSN---------------------------- 242 (365)
Q Consensus 200 ~~~~iLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 242 (365)
+..+|+|+|||+|. ++..|++.++ +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666677645 468999999 9999988641
Q ss_pred ---------CCeEEEeCCCCC-CCC---CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 243 ---------GNLKYVGGNMFE-AIP---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 243 ---------~~i~~~~~d~~~-~~~---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.+|+|..+|+.+ +++ .||+|+|.++++|++++...+++++++++|+| ||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 268999999998 454 59999999999999998889999999999999 777766
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=118.20 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=99.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CC-------CeEEEeCCCCC---------CCC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NG-------NLKYVGGNMFE---------AIP 257 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-------~i~~~~~d~~~---------~~~ 257 (365)
++.+|||||||+|..+..++.. ...+++|+|+ +.+++.|++ .. ++++...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766654 3468999999 999998875 11 25677888732 223
Q ss_pred --CceEEEeccccccC-ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccC---------------ccchhhh---
Q 017835 258 --PADAVLIKCVLHNW-NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKAD---------------YKTTETQ--- 316 (365)
Q Consensus 258 --~~D~i~~~~vlh~~-~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~---------------~~~~~~~--- 316 (365)
.||+|+|..++|+. +.++...+|++++++|+| ||.+++..+....-... ..+....
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 59999999999974 444557999999999999 89988876532110000 0000000
Q ss_pred --hhhhhhhhh-ccC--ccccCHHHHHHHHHhcCCccceEEEc
Q 017835 317 --LFMDMLMMV-LVK--GEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 317 --~~~d~~~~~-~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
....+.... ... ....+.+++.++++++||+++.....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 000000000 001 12357899999999999999887654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.2e-13 Score=122.83 Aligned_cols=112 Identities=12% Similarity=0.140 Sum_probs=90.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEEEeCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKYVGGN 251 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d 251 (365)
..+++.+. ..++.+|||||||+|..+..++...+..+++|+|+ +.+++.|+. ..+|+++.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555555 67889999999999999999998887667999999 666666542 2689999999
Q ss_pred CCC-CC----CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 252 MFE-AI----PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 252 ~~~-~~----~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
+.+ ++ ..+|+|++..+++ + ++..+.|+++++.||| ||+|++.|.+.+.+.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 998 44 3699999987764 3 3447788999999999 999999999887654
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=128.45 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=86.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------------CCCeEEEeCCCCC-CCC--Cce
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------------NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~-~~~--~~D 260 (365)
..++.+|||||||+|.++..|++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3577899999999999999999987 5679999999 888888864 2579999999988 443 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
+|++..++||++++....++++++++|+| | .++|..+.
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence 99999999999999888999999999999 6 66666543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=114.95 Aligned_cols=107 Identities=17% Similarity=0.088 Sum_probs=83.3
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--C-CCeEEEeCCCCC----C-CC
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--N-GNLKYVGGNMFE----A-IP 257 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~-~~i~~~~~d~~~----~-~~ 257 (365)
...+++.++ ..++.+|||||||+|.++..|+++ +.+++++|+ +.+++.+++ . ..+.....++.. . ..
T Consensus 34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTT
T ss_pred HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCC
Confidence 345556665 677899999999999999999987 569999999 889998875 1 223322222221 1 12
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++..++||++.++...++++++++| | ||++++...
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 599999999999999888899999999999 9 999998754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.6e-12 Score=107.86 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=94.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH----HHhcccCCCeEEEeCCCCCC-----CC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHV----VADLKSNGNLKYVGGNMFEA-----IP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~i~~~~~d~~~~-----~~-~~D~i~~~~ 266 (365)
.+++.+|||||||+|.++..+++..++.+++++|+ +.+ .+.++...++.++.+|+..+ .+ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 46778999999999999999999987779999999 654 34444456899999998763 22 49999986
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH----HHHHH
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW----AKLFF 342 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~----~~ll~ 342 (365)
+.+ ..+...++++++++||| ||++++.-...+. +. ..+.+++ .+.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~~--------------~~---------~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARSI--------------DS---------TAEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH--------------CT---------TSCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCCc--------------cc---------cCCHHHHHHHHHHHHH
Confidence 332 23335569999999999 8999887322100 00 0022222 12378
Q ss_pred hcCCccceEEEcCC---ceeEEEEeC
Q 017835 343 EAGFSDYKITDVLG---VRSLIEVYP 365 (365)
Q Consensus 343 ~aGf~~~~~~~~~~---~~~vi~~~~ 365 (365)
++ |++++...... .+.++.++|
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 88 99999887732 356666653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-13 Score=117.79 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=78.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC---CCC--CceEEEe-cc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE---AIP--PADAVLI-KC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~~--~~D~i~~-~~ 266 (365)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 5678999999999999999966543 48999999 888888775 3679999999876 344 4999999 55
Q ss_pred cc--ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 267 VL--HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vl--h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.+ +++.......++++++++||| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 53 344444456789999999999 9999887754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.3e-12 Score=110.21 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=100.3
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCC--CCCC--CceEEEecc
Q 017835 198 FEGLNTLVDVGGG-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMF--EAIP--PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~--~~~~--~~D~i~~~~ 266 (365)
.+++.+|||+||| +|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+. .+.+ .||+|++..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4678899999999 999999999986 779999999 888888874 237999999964 3443 599999987
Q ss_pred ccccCChhH-----------------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 267 VLHNWNDEE-----------------CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 267 vlh~~~~~~-----------------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
.+++.++.. ...+++++.+.|+| ||+++++-+...
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence 766544321 26889999999999 899888632100
Q ss_pred cccCHHHHHHHHHhcCCccceEEEcCCc--eeEEEEe
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDVLGV--RSLIEVY 364 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~--~~vi~~~ 364 (365)
...+++.+++++.||.+..+....+. ..++.+.
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~ 218 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFF 218 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEE
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEe
Confidence 13567888999999987776555553 4455543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-13 Score=116.34 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=88.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-----CCeEEEeCCCCCCC-------CCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-----GNLKYVGGNMFEAI-------PPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~-------~~~D~i~~~ 265 (365)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.++. ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 6778999999999999999999999999999999 8888888751 16888899988732 459999996
Q ss_pred cccc------cCChhHH------------------HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhh
Q 017835 266 CVLH------NWNDEEC------------------VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDM 321 (365)
Q Consensus 266 ~vlh------~~~~~~~------------------~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 321 (365)
..++ +++.+.. ..++++++++|+| ||++++++...
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~------------------ 167 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH------------------ 167 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC------------------
Confidence 4443 3333222 6789999999999 89966665421
Q ss_pred hhhhccCccccCHHHHHHHHH--hcCCccceEEEcC-CceeEEEE
Q 017835 322 LMMVLVKGEERNEKEWAKLFF--EAGFSDYKITDVL-GVRSLIEV 363 (365)
Q Consensus 322 ~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~ 363 (365)
...+++.++++ +.||..+++.... +...++.+
T Consensus 168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~ 202 (215)
T 4dzr_A 168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAV 202 (215)
T ss_dssp ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEE
T ss_pred ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEE
Confidence 13566778888 8999888877763 34444444
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=110.78 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=85.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 366789999999999999999998654 8999999 888888775 3689999999987 554 499999999987
Q ss_pred cCC-------------hhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 270 NWN-------------DEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 270 ~~~-------------~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
++. .+...++|++++++|+| ||++++.++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 765 34568999999999999 99999988643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=108.14 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=81.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC----C
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI----P 257 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~----~ 257 (365)
++..+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++ ++.+|..+.+ .
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 344444 56778999999999999999999999999999999 888888774 2378 8888887632 4
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++..++|+ ..+++++.++|+| ||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEee
Confidence 5999999999986 4679999999999 899988664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-12 Score=110.59 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=95.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHH----hcccCCCeEEEeCCCCCC--C----CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVA----DLKSNGNLKYVGGNMFEA--I----PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~i~~~~~d~~~~--~----~~~D~i~~~ 265 (365)
+.++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++ .++...+++++.+|+.++ . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5678899999999999999999986 7789999999 55443 444458899999999872 2 249999985
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.. ..+....++++++++|+| ||++++ ........... ..... -..+ .++|+++|
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i-~~~~~~~~~~~---~~~~~--------------~~~~-~~~l~~~G 208 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVI-SIKANCIDSTA---SAEAV--------------FASE-VKKMQQEN 208 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEE-EEEHHHHCSSS---CHHHH--------------HHHH-HHTTGGGT
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEE-EEcccccccCC---CHHHH--------------HHHH-HHHHHHCC
Confidence 44 233345678999999999 888888 32221000000 00000 1123 58889999
Q ss_pred CccceEEEcCCc---eeEEEE
Q 017835 346 FSDYKITDVLGV---RSLIEV 363 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~ 363 (365)
|+++++.....+ +.++.+
T Consensus 209 f~~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 209 MKPQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp EEEEEEEECTTTSSSEEEEEE
T ss_pred CceEEEEecCCccCCcEEEEE
Confidence 999987776432 444444
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-12 Score=110.93 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=99.5
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-- 257 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+.++
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 3444555 677899999999999999999999 88999999999 888888775 3569999999998655
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++ +.+++ ..+++++.++|+| ||++++..+... ...++
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~ 203 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMRL 203 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHHH
Confidence 4999987 34544 5789999999999 899988653210 24566
Q ss_pred HHHHHhcC--CccceEEEc
Q 017835 338 AKLFFEAG--FSDYKITDV 354 (365)
Q Consensus 338 ~~ll~~aG--f~~~~~~~~ 354 (365)
.+++++.| |..+++...
T Consensus 204 ~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHcCCCccccEEEEE
Confidence 77888899 887777654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-13 Score=118.78 Aligned_cols=144 Identities=11% Similarity=0.035 Sum_probs=96.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC----CCC-----CceEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE----AIP-----PADAV 262 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~----~~~-----~~D~i 262 (365)
+..+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999888899999999 888888875 3469999999543 333 49999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 263 LIKCVLHNWND-------------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 263 ~~~~vlh~~~~-------------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
++....|+... +....++.+++++|+| ||.+.+++....... .............+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~~~--------~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHDSL--------QLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHHHH--------HHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHHHH--------hcccceEEEEECCC
Confidence 99866654431 1123567889999999 898888765432100 00000001111123
Q ss_pred cccCHHHHHHHHHhcCCccceEEEc
Q 017835 330 EERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
...+.+++.++++++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 3445688999999999998887766
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-12 Score=110.73 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=99.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCC--CCceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAI--PPADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--~~~D~i~~~~vlh 269 (365)
..++.+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ .-.+++..+|+.+.+ ..||+|+++...|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999988755 9999999 888887774 112889999987744 3599999865543
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
....+++++++.|+| ||++++.+... .+.+++.++++++||+++
T Consensus 196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~----------------------------~~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 -----LHAALAPRYREALVP---GGRALLTGILK----------------------------DRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEG----------------------------GGHHHHHHHHHHTTCEEE
T ss_pred -----HHHHHHHHHHHHcCC---CCEEEEEeecc----------------------------CCHHHHHHHHHHCCCEEE
Confidence 346889999999999 89988865421 036788999999999999
Q ss_pred eEEEcCCceeEE
Q 017835 350 KITDVLGVRSLI 361 (365)
Q Consensus 350 ~~~~~~~~~~vi 361 (365)
++....++.+++
T Consensus 240 ~~~~~~~W~~l~ 251 (254)
T 2nxc_A 240 EEAAEGEWVLLA 251 (254)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCeEEEE
Confidence 998888776654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=107.35 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=102.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP---PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~---~~D~i~~~~ 266 (365)
.+++.+|+|||||+|.+++.+++.+|..+++++|. +.+++.|++ .++|++..+|.+++++ .||+|++..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 35678999999999999999999999889999999 888888875 4689999999998655 499998865
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+ ..+-..++|..+.+.|+| +|++++ .+.. ..+.++++|.+.||
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGF 135 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTE
T ss_pred C----ChHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCC
Confidence 4 334467899999999998 777666 3321 34567888999999
Q ss_pred ccceEEEc---CCceeEEEEe
Q 017835 347 SDYKITDV---LGVRSLIEVY 364 (365)
Q Consensus 347 ~~~~~~~~---~~~~~vi~~~ 364 (365)
.+++-.-+ .-+|.+|.+.
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98876533 3357788775
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-12 Score=112.71 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=80.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCCCceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIPPADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~~~D~i~~~~vlh 269 (365)
.+++.+|||||||+|.++..++.+.++.+++++|+ +.+++.|++ .++++++.+|+.+ +..+||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 67889999999999988766667778999999999 999998875 3789999999987 4346999998654
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.++. .+++++++++||| ||+|++.+.
T Consensus 198 -~~d~--~~~l~el~r~LkP---GG~Lvv~~~ 223 (298)
T 3fpf_A 198 -AEPK--RRVFRNIHRYVDT---ETRIIYRTY 223 (298)
T ss_dssp -CSCH--HHHHHHHHHHCCT---TCEEEEEEC
T ss_pred -ccCH--HHHHHHHHHHcCC---CcEEEEEcC
Confidence 2333 6899999999999 999998763
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-12 Score=114.51 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=94.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc----C---CCeEEEeCCCCCCCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS----N---GNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~~i~~~~~d~~~~~~-- 257 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ . .+++++.+|+.++++
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 3444455 677889999999999999999998 78899999999 888887764 2 579999999988655
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++ +++++ .++|+++.++|+| ||++++..+... ..+++
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~ 220 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKT 220 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence 4999998 34554 5789999999999 899988763210 13455
Q ss_pred HHHHHhcCCccceEEE
Q 017835 338 AKLFFEAGFSDYKITD 353 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~ 353 (365)
.+.++++||+.+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 6667778887776655
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-11 Score=105.29 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=97.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhcc----cCCCeEEEeCCCCCC-----CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLK----SNGNLKYVGGNMFEA-----IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~i~~~~~d~~~~-----~~-~~D~i~~~ 265 (365)
..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+. ...+++++.+|+.+. .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5677899999999999999999884 6689999999 76665543 246899999999872 23 49999975
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.. .......++++++++|+| ||++++. .......... . ......+++.++ .++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~---~--------------~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK---E--------------PEQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS---C--------------HHHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCC---C--------------hhhhhHHHHHHH-Hhh-
Confidence 43 222334569999999999 8998887 3221111110 0 001245677777 777
Q ss_pred CccceEEEcCCc---eeEEEEe
Q 017835 346 FSDYKITDVLGV---RSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~~ 364 (365)
|++++...+... +.++.++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEE
T ss_pred ceeeeEeccCcccCCCEEEEEE
Confidence 999988887544 5555554
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-12 Score=111.54 Aligned_cols=120 Identities=20% Similarity=0.233 Sum_probs=93.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC-----CCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI-----PPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----~~~D~i~~~ 265 (365)
.++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4678999999999999999999889999999999 888888764 3479999999876 32 259999987
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.+ .+ ...+++++.++|+| ||++++..... . . ...+++.+.+++.|
T Consensus 149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~-----~----~-----------------~~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKK---NGLFVALKAAS-----A----E-----------------EELNAGKKAITTLG 193 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEE---EEEEEEEECC------C----H-----------------HHHHHHHHHHHHTT
T ss_pred cc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC-----c----h-----------------HHHHHHHHHHHHcC
Confidence 63 33 36899999999999 89888763110 0 0 02356778889999
Q ss_pred CccceEEE
Q 017835 346 FSDYKITD 353 (365)
Q Consensus 346 f~~~~~~~ 353 (365)
|++.++..
T Consensus 194 ~~~~~~~~ 201 (240)
T 1xdz_A 194 GELENIHS 201 (240)
T ss_dssp EEEEEEEE
T ss_pred CeEeEEEE
Confidence 99887754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.5e-12 Score=104.82 Aligned_cols=133 Identities=12% Similarity=0.115 Sum_probs=91.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--CC-C-CceEEEec-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--AI-P-PADAVLIK- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~~-~-~~D~i~~~- 265 (365)
.+++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++..|+.. +. + .||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 467789999999999999999987 789999999 889888875 3789999977655 12 3 49999876
Q ss_pred cccccC------ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHH
Q 017835 266 CVLHNW------NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAK 339 (365)
Q Consensus 266 ~vlh~~------~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 339 (365)
..+++- ..+....+|+++.++|+| ||++++........... . .....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~----------------~~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----E----------------KDAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----H----------------HHHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----H----------------HHHHHHHHH
Confidence 333220 224457889999999999 89998876532221110 0 012345555
Q ss_pred HHHhcCCccceEEEcC
Q 017835 340 LFFEAGFSDYKITDVL 355 (365)
Q Consensus 340 ll~~aGf~~~~~~~~~ 355 (365)
.+...+|.+.......
T Consensus 155 ~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 155 GLDQRVFTAMLYQPLN 170 (185)
T ss_dssp HSCTTTEEEEEEEESS
T ss_pred hCCCceEEEEEehhhc
Confidence 5566778887776663
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=104.88 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=93.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CC-CeEEEeCCCCCC---CCC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NG-NLKYVGGNMFEA---IPP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~i~~~~~d~~~~---~~~ 258 (365)
++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .. +++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344455 567889999999999999999988 789999999 888888775 23 899999999882 346
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++...+ +. . +++++.++|+| ||++++..... .+..++.
T Consensus 123 ~D~v~~~~~~----~~--~-~l~~~~~~Lkp---gG~lv~~~~~~----------------------------~~~~~~~ 164 (204)
T 3njr_A 123 PEAVFIGGGG----SQ--A-LYDRLWEWLAP---GTRIVANAVTL----------------------------ESETLLT 164 (204)
T ss_dssp CSEEEECSCC----CH--H-HHHHHHHHSCT---TCEEEEEECSH----------------------------HHHHHHH
T ss_pred CCEEEECCcc----cH--H-HHHHHHHhcCC---CcEEEEEecCc----------------------------ccHHHHH
Confidence 9999987744 22 3 89999999999 89988855321 0345667
Q ss_pred HHHHhcCCccceEE
Q 017835 339 KLFFEAGFSDYKIT 352 (365)
Q Consensus 339 ~ll~~aGf~~~~~~ 352 (365)
+++++.|+++.++.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 78888898766653
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-12 Score=114.91 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=82.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------------CCCeEEEeCCCCC-C----C--C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------------NGNLKYVGGNMFE-A----I--P 257 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~-~----~--~ 257 (365)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999998874 5779999999 888887764 1278999999987 3 3 2
Q ss_pred --CceEEEeccccccC--ChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 258 --PADAVLIKCVLHNW--NDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 258 --~~D~i~~~~vlh~~--~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.||+|++..++|+. +.++...+|++++++|+| ||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCC
Confidence 59999999999987 445668999999999999 8988887653
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-12 Score=107.77 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=75.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.+..+ .||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 468999999999999999999999999999999 888887764 2459999999988433 5999997543
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+ ...++++++++|+| ||.+++.
T Consensus 142 -~~--~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 142 -AS--LNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp -SS--HHHHHHHHTTSEEE---EEEEEEE
T ss_pred -CC--HHHHHHHHHHhcCC---CcEEEEE
Confidence 22 36889999999999 8888876
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=112.08 Aligned_cols=114 Identities=12% Similarity=0.142 Sum_probs=88.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC--CCC---CceEEEeccccccC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE--AIP---PADAVLIKCVLHNW 271 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~--~~~---~~D~i~~~~vlh~~ 271 (365)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 56789999999999999999998 679999999 888988876 6789999999965 433 499999871
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKI 351 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 351 (365)
+ ...+|++++++|+| ||+++.. +...+.+++.++++++||++..+
T Consensus 120 -~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 -G--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp -C--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred -C--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence 2 25679999999999 8888710 01114456778888888887766
Q ss_pred EEc
Q 017835 352 TDV 354 (365)
Q Consensus 352 ~~~ 354 (365)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-11 Score=103.41 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=94.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHH----HhcccCCCeEEEeCCCCCCC------CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVV----ADLKSNGNLKYVGGNMFEAI------PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~~i~~~~~d~~~~~------~~~D~i~~~ 265 (365)
++++.+|||+|||+|.++..+++. .|+.+++++|. +.++ +.+++..++.++.+|+..+. ..||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 678899999999999999999886 56889999999 6554 34444578999999997631 259999886
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
... ++ ....+++.+++.||| ||++++.......+... +..+ ..++....|+++|
T Consensus 154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~d~t~------------------~~~e-~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSIDVTK------------------DPKE-IYKTEVEKLENSN 207 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC-------C------------------CSSS-STTHHHHHHHHTT
T ss_pred CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCcccCC------------------CHHH-HHHHHHHHHHHCC
Confidence 443 33 223345566779999 89999873211110000 0000 1123445678899
Q ss_pred CccceEEEcCC---ceeEEEEe
Q 017835 346 FSDYKITDVLG---VRSLIEVY 364 (365)
Q Consensus 346 f~~~~~~~~~~---~~~vi~~~ 364 (365)
|+++++..+.. .+.++.++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEE
Confidence 99999988833 35555554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=116.31 Aligned_cols=107 Identities=19% Similarity=0.361 Sum_probs=86.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------C--CCeEEEeCCCCCCCC-
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------N--GNLKYVGGNMFEAIP- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~--~~i~~~~~d~~~~~~- 257 (365)
.+++.++ ..+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ . .++++..+|+.++++
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 3555565 45568999999999999999999999999999999 888888774 1 258889999998665
Q ss_pred -CceEEEecccccc---CChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 258 -PADAVLIKCVLHN---WNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 258 -~~D~i~~~~vlh~---~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.||+|++...+|+ ..+....++|+++.+.|+| ||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 5999999988885 3455556899999999999 89998864
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=105.88 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=79.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~--~~D~i~~~~ 266 (365)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .||+|++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 3567999999999999999999999999999999 888888764 3689999999987 3 43 499999886
Q ss_pred ccccCChh------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWNDE------ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~~~------~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
........ ....+++++.++|+| ||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 54321110 125789999999999 89888753
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-11 Score=103.01 Aligned_cols=119 Identities=21% Similarity=0.324 Sum_probs=93.5
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC---CC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI---PP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~---~~ 258 (365)
++..+. ..+..+|||+|||+|.++..+++.+ .+++++|. +.+++.+++ ..++++..+|+.++. +.
T Consensus 25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 344444 5677899999999999999999886 79999999 888887764 268999999987632 46
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
||+|++..++++ ...+++++.++|+| ||.+++..... .+..++.
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~~----------------------------~~~~~~~ 144 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAILL----------------------------ETKFEAM 144 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECBH----------------------------HHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecCc----------------------------chHHHHH
Confidence 999999988764 26789999999999 88888865321 0245678
Q ss_pred HHHHhcCCcc
Q 017835 339 KLFFEAGFSD 348 (365)
Q Consensus 339 ~ll~~aGf~~ 348 (365)
+++++.||.+
T Consensus 145 ~~l~~~g~~~ 154 (192)
T 1l3i_A 145 ECLRDLGFDV 154 (192)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHCCCce
Confidence 8899999954
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=112.04 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=94.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC-----CCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI-----PPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----~~~D~i~~~ 265 (365)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999999 888888774 3469999999876 32 359999997
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.+- + ...+++.+.+.|+| ||++++........ ...++.+.++..|
T Consensus 159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~~g~~~~~--------------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEV---GGAAVAMKGPRVEE--------------------------ELAPLPPALERLG 203 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEE---EEEEEEEECSCCHH--------------------------HHTTHHHHHHHHT
T ss_pred CcC----C--HHHHHHHHHHHcCC---CeEEEEEeCCCcHH--------------------------HHHHHHHHHHHcC
Confidence 542 2 25789999999999 89988765321100 1235567778889
Q ss_pred CccceEEEc
Q 017835 346 FSDYKITDV 354 (365)
Q Consensus 346 f~~~~~~~~ 354 (365)
|++.++.+.
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 998887765
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=111.84 Aligned_cols=129 Identities=13% Similarity=0.179 Sum_probs=95.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC-C---CC-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE-A---IP-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~-~---~~-~~D~i 262 (365)
.+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|+.+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 888887764 3689999999876 2 12 59999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 263 LIKCVLHNWNDEEC--VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 263 ~~~~vlh~~~~~~~--~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
++....+..+.... .+++++++++|+| ||.+++..... +. ......++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~~--------------~~----------~~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGESI--------------WL----------DLELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECCT--------------TT----------CHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCCc--------------cc----------chHHHHHHHHH
Confidence 99776665544322 5889999999999 88888763210 00 01145788899
Q ss_pred HHhcCCccceEEEc
Q 017835 341 FFEAGFSDYKITDV 354 (365)
Q Consensus 341 l~~aGf~~~~~~~~ 354 (365)
++++||..++++..
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887765
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=105.44 Aligned_cols=131 Identities=12% Similarity=-0.004 Sum_probs=103.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP---PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~---~~D~i~~~~ 266 (365)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++..+ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 35678999999999999999999988889999999 888888875 4689999999998543 499998866
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+. .+-..++|....+.|++ +|++++.-. ...++++++|.+.||
T Consensus 99 mG----g~lI~~IL~~~~~~l~~---~~~lIlqp~------------------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 99 MG----GRLIADILNNDIDKLQH---VKTLVLQPN------------------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp EC----HHHHHHHHHHTGGGGTT---CCEEEEEES------------------------------SCHHHHHHHHHHTTE
T ss_pred Cc----hHHHHHHHHHHHHHhCc---CCEEEEECC------------------------------CChHHHHHHHHHCCC
Confidence 53 34567899999999998 777666331 035678999999999
Q ss_pred ccceEEEc---CCceeEEEEeC
Q 017835 347 SDYKITDV---LGVRSLIEVYP 365 (365)
Q Consensus 347 ~~~~~~~~---~~~~~vi~~~~ 365 (365)
.+++-.-+ .-+|.||.+.|
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEEe
Confidence 98876544 33588888753
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=105.43 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=81.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C-CC--CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A-IP--PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~~--~~D~i~~ 264 (365)
.+++.+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++ ..+++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4677899999999999999999985 6779999999 888888775 2689999999876 2 22 5999998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHN-------WNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~-------~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
...+.. ...+...++++++.++|+| ||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccC
Confidence 765511 1223446799999999999 89999877543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-12 Score=116.39 Aligned_cols=109 Identities=18% Similarity=0.302 Sum_probs=88.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC-Cce
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP-PAD 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-~~D 260 (365)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ...++++.+|+.+..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 44555564 34567999999999999999999999999999999 788887774 2346788999987434 599
Q ss_pred EEEecccccc---CChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 261 AVLIKCVLHN---WNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 261 ~i~~~~vlh~---~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+|++..++|+ +..+...++|++++++|+| ||.++++..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 9999999986 2455668999999999999 999998765
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-11 Score=106.27 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=94.3
Q ss_pred cc-CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---CC--CceEEE
Q 017835 198 FE-GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---IP--PADAVL 263 (365)
Q Consensus 198 ~~-~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~~--~~D~i~ 263 (365)
.+ ++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+. ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998765 9999999 888888775 35799999999872 32 599999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 264 IKCVLHNW------------------NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 264 ~~~vlh~~------------------~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
+.-.++.. .......+++.+.++|+| ||+++++-. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~---~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVHR---P-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEEC---T--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEEc---H--------------------
Confidence 96544322 112346799999999999 899888421 1
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
....++.+++++.||...++...
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 03456778888999988776655
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=103.22 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=88.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CC---C--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AI---P--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~---~--~~D~i~~~~vl 268 (365)
..++.+|||||||. +.+|. +.+++.+++ ..+++++.+|+.+ +. + .||+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 67889999999996 23787 888888876 3469999999987 44 4 49999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 269 HNW-NDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 269 h~~-~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
||+ ++. .++|++++++||| ||++++.++....... ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC-
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC-
Confidence 998 665 7899999999999 9999996654322110 1123578999999999999
Q ss_pred cceEEE
Q 017835 348 DYKITD 353 (365)
Q Consensus 348 ~~~~~~ 353 (365)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 44 444
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=101.16 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=76.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------C-CCeEEEeCCCCCC-CC-CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------N-GNLKYVGGNMFEA-IP-PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~i~~~~~d~~~~-~~-~~D~i~~~~v 267 (365)
+.+..+|||+|||+|.++..++...|+++++++|+ +.+++.+++ . .++++ .|..+. .+ +||+|++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 35678999999999999999999999999999999 899998875 2 24555 666553 33 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+|++ ++ ....+.++.+.|+| ||.++-.+
T Consensus 125 LHlL-~~-~~~al~~v~~~L~p---ggvfISfp 152 (200)
T 3fzg_A 125 LPVL-KQ-QDVNILDFLQLFHT---QNFVISFP 152 (200)
T ss_dssp HHHH-HH-TTCCHHHHHHTCEE---EEEEEEEE
T ss_pred HHhh-hh-hHHHHHHHHHHhCC---CCEEEEeC
Confidence 9999 43 35566699999999 55444444
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-11 Score=104.46 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=101.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC---CceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP---PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~---~~D~i~~~~ 266 (365)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|++..+|.++..+ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 35678999999999999999999988889999999 888888875 4689999999998543 399998865
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCC
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+ ..+-..++|.+..+.|++ ++++++.-. . ..+.++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~L~~---~~~lIlq~~-~-----------------------------~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLAG---VTKLILQPN-I-----------------------------AAWQLREWSEQNNW 141 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEES-S-----------------------------CHHHHHHHHHHHTE
T ss_pred C----chHHHHHHHHHHHHHhCC---CCEEEEEcC-C-----------------------------ChHHHHHHHHHCCC
Confidence 4 334567899999999988 677766431 0 35677899999999
Q ss_pred ccceEEEc---CCceeEEEEe
Q 017835 347 SDYKITDV---LGVRSLIEVY 364 (365)
Q Consensus 347 ~~~~~~~~---~~~~~vi~~~ 364 (365)
.+++-..+ .-+|.+|.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98654433 3357787765
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-11 Score=106.57 Aligned_cols=125 Identities=16% Similarity=0.204 Sum_probs=97.1
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-CC-
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-IP- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~~- 257 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..++++..+|+.+. ++
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4555555 678889999999999999999998 77899999999 888887764 26899999999874 55
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++ +++++ ..+|+++.++|+| ||++++..+... ...+
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNIT----------------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 4999997 34554 4789999999999 899998774210 1245
Q ss_pred HHHHHHhcCCccceEEE
Q 017835 337 WAKLFFEAGFSDYKITD 353 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~ 353 (365)
+.+.++++||..+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 56667778888766654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.7e-11 Score=105.71 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=94.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC-C-CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI-P-PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-~-~~D~i~~~~v 267 (365)
.+++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+.. . .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 356789999999999999999999766 8999999 888888774 356999999998833 3 5999988543
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
. ...++++++.++|+| ||.+++.+....... .....+++.++++++||+
T Consensus 202 ~------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred h------hHHHHHHHHHHHCCC---CeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCe
Confidence 2 125689999999999 899998876532111 012467788999999998
Q ss_pred cce
Q 017835 348 DYK 350 (365)
Q Consensus 348 ~~~ 350 (365)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=108.83 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=79.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~ 274 (365)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++ .||+|++..+++|+.++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 36789999999999999999987 579999999 8888888752111378889887 554 49999999877776433
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
...+|++++++|+| ||++++..+.
T Consensus 131 -~~~~l~~~~~~Lkp---gG~l~~~~~~ 154 (260)
T 2avn_A 131 -KDKAFSEIRRVLVP---DGLLIATVDN 154 (260)
T ss_dssp -HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred -HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 47899999999999 8998887654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-11 Score=112.65 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=85.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC-Cc
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP-PA 259 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~ 259 (365)
.+++.+. ..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .|
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 3445554 457789999999999999988875 5569999999557766653 3789999999987 555 59
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|+|++..+++|+..+.....+.++++.|+| ||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 999999999998877777889999999999 8888743
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=105.74 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=77.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC----CC--CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA----IP--PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~~--~~D~i~~~ 265 (365)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .+|.|++.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 3567999999999999999999999999999999 888887764 35799999998762 44 49999887
Q ss_pred cccccCChh-HH------HHHHHHHHHhcccCCCCcEEEEEe
Q 017835 266 CVLHNWNDE-EC------VKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 266 ~vlh~~~~~-~~------~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.... |+.. .. ..++++++++|+| ||.+++..
T Consensus 113 ~~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 113 FPDP-WHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp SCCC-CCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCC-ccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 5433 2221 11 2589999999999 88888765
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-11 Score=102.99 Aligned_cols=98 Identities=17% Similarity=0.282 Sum_probs=77.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~--~~D~i~~~~ 266 (365)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 3567999999999999999999999999999999 888887764 3589999999876 2 43 499988754
Q ss_pred ccccCChh-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 267 VLHNWNDE-------ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 267 vlh~~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
... |... ....+|++++++|+| ||.|++..
T Consensus 117 ~~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 117 SDP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 332 2211 025789999999999 89888764
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-11 Score=98.85 Aligned_cols=119 Identities=20% Similarity=0.232 Sum_probs=92.6
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--Cce
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PAD 260 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D 260 (365)
+++.+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++ ..+++++.+|+.++.+ .||
T Consensus 27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 444444 56778999999999999999998 7889999999 888888775 2689999999987544 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
+|++..+ .....+++++++. | ||.+++...... +..++.++
T Consensus 103 ~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~~ 143 (183)
T 2yxd_A 103 KAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIINE 143 (183)
T ss_dssp EEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHHH
T ss_pred EEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHHH
Confidence 9999887 2236788999888 8 899988764210 24567888
Q ss_pred HHhcCCccceE
Q 017835 341 FFEAGFSDYKI 351 (365)
Q Consensus 341 l~~aGf~~~~~ 351 (365)
+++.||.+..+
T Consensus 144 l~~~g~~~~~~ 154 (183)
T 2yxd_A 144 FESRGYNVDAV 154 (183)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHcCCeEEEE
Confidence 89999876554
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.1e-11 Score=112.29 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=85.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhc-------cc--------CCCeEEEeCCC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADL-------KS--------NGNLKYVGGNM 252 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~i~~~~~d~ 252 (365)
.+++.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+++++.+|.
T Consensus 233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3445555 57789999999999999999999887779999999 7776666 32 26899998754
Q ss_pred C-CC------CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 253 F-EA------IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 253 ~-~~------~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
+ .+ ...||+|++.++++ . ++..+.|+++.+.|+| ||+|++.+...+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 4 32 23599999987773 2 3446789999999999 99999998776654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-11 Score=102.04 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=81.5
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC---C
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP---P 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~---~ 258 (365)
+++.+. ..++.+|||||||+|.++..+++.. |..+++++|. +.+++.+++ ..++++..+|+..+.+ .
T Consensus 69 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 69 MCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 444444 5677899999999999999999987 6689999999 888888764 3579999999876443 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
||+|++..++|++++ ++.+.|+| ||++++...
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 999999999998873 68899999 898888754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=116.10 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=86.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP-P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~ 258 (365)
..+++.+. ..++.+|||||||+|.++..+++ .+..+++++|+.++++.+++ .++++++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 44555554 45678999999999999998887 57789999999557777664 3789999999988 555 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
||+|++..++|++.++.....+.++++.|+| ||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999999888988877778888999999999 888774
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-11 Score=107.11 Aligned_cols=101 Identities=13% Similarity=0.210 Sum_probs=82.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-- 257 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+|+.+.++
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 3455555 677889999999999999999999 68899999999 888888774 1589999999987554
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++ +.+++ ..+|+++.++|+| ||++++..+
T Consensus 181 ~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCP 214 (277)
T ss_dssp SEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEES
T ss_pred ccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeC
Confidence 4999998 23444 5789999999999 898888764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.3e-11 Score=101.07 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=80.8
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---CCc
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---PPA 259 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~~~ 259 (365)
+++.+. ..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++ ..+++++.+|+.+.. ..|
T Consensus 69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 344444 577899999999999999999998 679999999 888888774 357999999998843 259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+|++..++|++++ ++.+.|+| ||++++.-..
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhccc---CcEEEEEEcC
Confidence 99999999999886 47889999 8988886543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.3e-11 Score=103.17 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=98.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--CceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--PADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~~D~i~~~~vlh~ 270 (365)
.+..+|||||||.|-++..+....|..+++++|+ +.+++.++. ..+.++...|+....| .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 888888775 4568889999998444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccce
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 350 (365)
+.+++....+ ++.++|+| +|.++-++. ..-.+..+ .++ ..-...|.+.+.+.|+.+.+
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~-ksl~Grs~-------gm~----------~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFPT-KSLGQRSK-------GMF----------QNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEEC-C--------------CHH----------HHHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEeccc-hhhcCCCc-------chh----------hHHHHHHHHHHHhcCCceee
Confidence 9888766677 89999999 444444443 21111111 010 01357889999999996544
Q ss_pred EEE
Q 017835 351 ITD 353 (365)
Q Consensus 351 ~~~ 353 (365)
+.-
T Consensus 269 ~~~ 271 (281)
T 3lcv_B 269 LEI 271 (281)
T ss_dssp EEE
T ss_pred eee
Confidence 433
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.9e-11 Score=106.08 Aligned_cols=148 Identities=12% Similarity=0.054 Sum_probs=95.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhc-ccCCCeEEEe-CCCCC----CCC--Cc
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADL-KSNGNLKYVG-GNMFE----AIP--PA 259 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~~i~~~~-~d~~~----~~~--~~ 259 (365)
.+++.+. ...++.+|||||||+|.++..+++. +..+++++|. +.|++.+ +...++.... .|+.. .+| .|
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 3455554 1235679999999999999988886 4469999999 7888773 3345654432 34322 133 39
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc-cCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL-VKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~t~~e~~ 338 (365)
|++++..++|++ ..+|++++++|+| ||+++++- .|..... ....+-.-... .....+..+++.
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~------~~~~~~~G~vrd~~~~~~~~~~v~ 216 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILVD---GGQVVALV--KPQFEAG------REQIGKNGIVRESSIHEKVLETVT 216 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSC------GGGCC-CCCCCCHHHHHHHHHHHH
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEE--CcccccC------hhhcCCCCccCCHHHHHHHHHHHH
Confidence 999998888754 4679999999999 99998862 1111000 00000000000 001123678999
Q ss_pred HHHHhcCCccceEEEc
Q 017835 339 KLFFEAGFSDYKITDV 354 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~ 354 (365)
++++++||++..+..-
T Consensus 217 ~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHTTEEEEEEEEC
T ss_pred HHHHHCCCEEEEEEEC
Confidence 9999999998877664
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-11 Score=104.47 Aligned_cols=99 Identities=11% Similarity=0.189 Sum_probs=79.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CC------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AI------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~------~~~ 259 (365)
..+..+|||||||+|..+..+++.++ +.+++++|+ +.+++.+++ .++++++.+|+.+ .. ..|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 45678999999999999999999864 889999999 888888775 3579999999754 22 359
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+|++....+++.+. .++++.+ +.|+| ||.|++.+..
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCC---CeEEEEeCCC
Confidence 999998877766443 5677777 99999 8887775544
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-10 Score=97.56 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=80.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C--CCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I--PPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~--~~~D~i~~~~ 266 (365)
.++.+|||+|||+|.++..++.. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46789999999999999987774 4568999999 888888875 35899999998872 3 3599999988
Q ss_pred ccccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 017835 267 VLHNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~~ 303 (365)
.+|+ ..+...++++++.+ +|+| ||.+++.....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERATT 156 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence 7664 34456889999999 9999 88888865543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=99.15 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=80.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C-----CCce
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I-----PPAD 260 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~-----~~~D 260 (365)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 45678999999999999999999988 789999999 888887764 45799999998762 1 3599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
+|++... .+....+++++.+.|+| ||.+++-+....
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9998654 23446889999999999 887777665543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.3e-11 Score=104.45 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=81.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhccc---CC-------C---------------------
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK--FPHIECTVFDQ-PHVVADLKS---NG-------N--------------------- 244 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~-------~--------------------- 244 (365)
.+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.+++ .. +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35679999999999999999998 77889999999 888888874 22 2
Q ss_pred ----eE-------------EEeCCCCCCC------C--CceEEEeccccccCCh-------hHHHHHHHHHHHhcccCCC
Q 017835 245 ----LK-------------YVGGNMFEAI------P--PADAVLIKCVLHNWND-------EECVKILKNCKKAIAINGK 292 (365)
Q Consensus 245 ----i~-------------~~~~d~~~~~------~--~~D~i~~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~ 292 (365)
++ ++.+|++++. + .||+|++...+++..+ +....++++++++|+|
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--- 206 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA--- 206 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---
Confidence 67 9999998843 3 5999999877665443 5567899999999999
Q ss_pred CcEEEEEeee
Q 017835 293 AGKVIIIDIK 302 (365)
Q Consensus 293 gG~lli~e~~ 302 (365)
||+++++...
T Consensus 207 gG~l~~~~~~ 216 (250)
T 1o9g_A 207 HAVIAVTDRS 216 (250)
T ss_dssp TCEEEEEESS
T ss_pred CcEEEEeCcc
Confidence 9999985443
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=107.27 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=77.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 456789999999999999999987 5669999999667777764 4569999999988 555 5999999776
Q ss_pred cccC-ChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 268 LHNW-NDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 268 lh~~-~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.+++ ..+....+++++.++|+| ||.++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 5544 223347889999999999 88876
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=100.73 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=80.8
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCCCC---Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEAIP---PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~~---~~D 260 (365)
.+++.+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+..+ .||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 3444454 5677899999999999999999985 79999999 888888875 2289999999987332 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
+|++..++|++.+ ++.+.|+| ||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEcC
Confidence 9999999998874 57889999 8998887643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=103.78 Aligned_cols=99 Identities=12% Similarity=0.267 Sum_probs=77.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---C-------CCeEEEeCCCCCC--------CC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---N-------GNLKYVGGNMFEA--------IP- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~-------~~i~~~~~d~~~~--------~~- 257 (365)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ . ++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999999 888888765 1 2599999999874 22
Q ss_pred -CceEEEeccccc----------------cCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 -PADAVLIKCVLH----------------NWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 -~~D~i~~~~vlh----------------~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.||+|++.-..+ |........+++.+.+.|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 499999973332 22222357889999999999 8988875
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.4e-11 Score=103.24 Aligned_cols=98 Identities=15% Similarity=0.290 Sum_probs=79.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC-----CCceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI-----PPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-----~~~D~i~~ 264 (365)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 45678999999999999999999888999999999 888888775 358999999998732 35999997
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
... ......+++++.+.|+| ||.|++-+..+
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLY 179 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence 543 22346789999999999 78776655443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.8e-11 Score=105.03 Aligned_cols=99 Identities=11% Similarity=0.200 Sum_probs=80.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CC---CCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AI---PPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~---~~~D~i 262 (365)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ .. ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999988 889999999 888888774 3589999999876 22 259999
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
++.. +.+....+|+++.++|+| ||.|++.+....
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 9854 233446789999999999 888877665443
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=101.29 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------CCCeEEEeCCCCC--C--CC--Cc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------NGNLKYVGGNMFE--A--IP--PA 259 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~--~--~~--~~ 259 (365)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 5567999999999999999999999999999999 888776541 4689999999986 2 33 48
Q ss_pred eEEEeccccccCCh--hH----HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 260 DAVLIKCVLHNWND--EE----CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 260 D~i~~~~vlh~~~~--~~----~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
|.|++.....+... .. ...+|++++++|+| ||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 99987543221110 00 13689999999999 89888764
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-10 Score=96.58 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=77.5
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCC--CCeEEEeechHHHHhcccCCCeEEEeCCCCC-C-----------
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP--HIECTVFDQPHVVADLKSNGNLKYVGGNMFE-A----------- 255 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~----------- 255 (365)
+.+.+. .+.++.+|||||||+|.++..+++.+| +.+++++|+.++. ...+++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 344443 246678999999999999999999988 6899999995431 24679999999987 3
Q ss_pred --------------CC--CceEEEeccccccCC----hhH-----HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 256 --------------IP--PADAVLIKCVLHNWN----DEE-----CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 256 --------------~~--~~D~i~~~~vlh~~~----~~~-----~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++ .||+|++...+|+.. +.. ..++|++++++|+| ||++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 24 599999988776532 211 13489999999999 88887743
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=95.31 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=78.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHHhcccCCCeEEEeCCCCC-C--------CC--CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQPHVVADLKSNGNLKYVGGNMFE-A--------IP--PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~--------~~--~~D~i~~~ 265 (365)
..+..+|||+|||+|.++..+++.+ |+.+++++|..++.+ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 4567899999999999999999984 778999999944432 3789999999987 3 44 49999999
Q ss_pred cccccCChhH---------HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEE---------CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~---------~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.++|+..... ...+++++.++|+| ||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF 137 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEe
Confidence 8888765431 15889999999999 899888665
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=104.15 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=76.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC-Cc---eEEEec-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-PA---DAVLIK- 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-~~---D~i~~~- 265 (365)
.+..+|||+|||+|.++..++.. |+.+++++|+ +.+++.+++ .++++++.+|++++.+ .| |+|+++
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 45679999999999999999999 9999999999 888888875 3469999999998654 58 999996
Q ss_pred -----------cccccCChh------HHHHHHHHHH-HhcccCCCCcEEEE
Q 017835 266 -----------CVLHNWNDE------ECVKILKNCK-KAIAINGKAGKVII 298 (365)
Q Consensus 266 -----------~vlh~~~~~------~~~~~L~~i~-~~L~p~~~gG~lli 298 (365)
.+. |.+.. +-..+++++. +.++| ||.+++
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 233 22221 1137899999 99999 888776
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=101.35 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=80.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC---
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--- 257 (365)
..+++.+. ..++.+|||||||+|.++..+++..+ .+++++|. +.+++.+++ ..++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 33444454 56788999999999999999999987 89999998 888887764 2469999999855544
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++..+++++.+ ++.+.|+| ||++++.-.
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 3999999999998774 57889999 888887654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=107.34 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=81.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC-CC--CceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA-IP--PADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~-~~--~~D~i~~~~vlh~ 270 (365)
++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+. .+ .||+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 569999999 888888775 23589999999983 33 5999999999987
Q ss_pred ---CChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 271 ---WNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 271 ---~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
...+...++++++++.|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3455668999999999999 89988864
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-10 Score=101.61 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=74.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHHhccc-C---------------CCeEEEeCCCCCC---C
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ--PHVVADLKS-N---------------GNLKYVGGNMFEA---I 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~-~---------------~~i~~~~~d~~~~---~ 256 (365)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . .+++++..|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3466899999999999999888763 348999998 577776653 1 3788886665441 1
Q ss_pred ------CCceEEEeccccccCChhHHHHHHHHHHHhcc---cCCCCcEEEEE
Q 017835 257 ------PPADAVLIKCVLHNWNDEECVKILKNCKKAIA---INGKAGKVIII 299 (365)
Q Consensus 257 ------~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~---p~~~gG~lli~ 299 (365)
..||+|++..++||.++. ..+++.+.++|+ | ++||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~--~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAH--DALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGH--HHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHHH--HHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 359999999999876554 789999999999 7 346877663
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=100.66 Aligned_cols=98 Identities=10% Similarity=0.258 Sum_probs=81.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C---CCceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I---PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~---~~~D~i~ 263 (365)
..++.+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+. . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 45678999999999999999999999999999999 888888775 25799999999872 2 3599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+....+ ....+|+++.+.|+| ||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence 977654 346889999999999 88888765443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=101.20 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=77.2
Q ss_pred CCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCC--C---C--CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA--I---P--PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~--~---~--~~D~i~~~~ 266 (365)
+..+|||||||+|..+..|++. +|+.+++++|+ +.+++.++. ..+|+++.+|+.+. + . .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4579999999999999999997 78899999999 888887764 57899999999873 1 2 499998865
Q ss_pred ccccCChhHHHHHHHHHHH-hcccCCCCcEEEEEee
Q 017835 267 VLHNWNDEECVKILKNCKK-AIAINGKAGKVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~-~L~p~~~gG~lli~e~ 301 (365)
. |. ....+|+++.+ .|+| ||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 42 33678999997 9999 899888665
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-10 Score=100.58 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=79.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------~~~ 259 (365)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 35678999999999999999999886 789999999 777776664 4689999999876 2 2 469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
|+|++... ......+|+++.++|+| ||.|++-+..+..
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence 99988643 33446789999999999 7877776665543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=104.36 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=81.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC---C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI---P 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---~ 257 (365)
.+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ ..+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3444455 56788999999999999999999877 478999999 888888774 356999999998732 3
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++..++|+++ +++.+.|+| ||++++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 599999999999887 357889999 898888753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=104.54 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=78.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CCC--CceEEEeccccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AIP--PADAVLIKCVLH 269 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~~--~~D~i~~~~vlh 269 (365)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..|++++.+|..+ ..+ .||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 899998875 4689999999876 333 599999865444
Q ss_pred cCChhH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 270 NWNDEE--CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 270 ~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
...... ..+++++++++|+| ||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 322221 26899999999999 787776554
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=101.06 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=80.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~------~~~ 259 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+. . ..|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 35678999999999999999999987 789999999 888888774 35799999998662 1 469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
|+|++... ......+++++.++|+| ||.|++.+..+.
T Consensus 142 D~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 99996542 33457789999999999 888887766554
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=101.62 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=79.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEeccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~ 273 (365)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.+..+|+.+ +++ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4678999999999999999999988899999999 888888876 5788999999876 444 59999986653
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
..+++++++|+| ||++++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 248899999999 99999987654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-10 Score=104.01 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=76.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 566789999999999999998887 4469999999558777764 2789999999987 555 4999998764
Q ss_pred cccC-ChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 268 LHNW-NDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 268 lh~~-~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.+.+ .......+|+++.++|+| ||+++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 3332 223346799999999999 88876
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=107.85 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=80.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vl 268 (365)
..++.+|||||||+|.++..+++.. ..+++++|...+++.+++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999873 349999999777777664 4679999999987 554 59999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 269 HNWND-EECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 269 h~~~~-~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|.... .....+++++.+.|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 66543 3356789999999999 8888765543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=107.76 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=75.0
Q ss_pred cCCCeEEEecCC------ccHHHHHHHHH-CCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CC--------CCceE
Q 017835 199 EGLNTLVDVGGG------TGTLASAIAKK-FPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AI--------PPADA 261 (365)
Q Consensus 199 ~~~~~iLDiG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~--------~~~D~ 261 (365)
.+..+||||||| +|..+..+++. +|+.+++++|+ +.+. ....+++++.+|+.+ ++ ..||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 66666666665 69999999999 6652 236799999999988 33 35999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|++.. .|++.+ ..+.|++++++||| ||.+++.|..
T Consensus 292 Visdg-sH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDG-SHINAH--VRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEECS-CCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEECC-cccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence 99864 566544 47899999999999 8888887765
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=101.30 Aligned_cols=149 Identities=13% Similarity=0.025 Sum_probs=89.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeC-CCC----CCCC--Cc
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGG-NMF----EAIP--PA 259 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~-d~~----~~~~--~~ 259 (365)
.+++.+. ....+.+|||||||+|.++..+++.. ..+++++|+ +.+++.+.+ ..++..... ++. ...+ .+
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 3444454 12346799999999999999999873 349999999 788777554 344332211 111 1122 24
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh-ccCccccCHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV-LVKGEERNEKEWA 338 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~t~~e~~ 338 (365)
|.+.+..++.++ ..+|++++++|+| ||+++++. .+. +.......+-.-.. .......+.+++.
T Consensus 105 d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~ 168 (232)
T 3opn_A 105 SFTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVL 168 (232)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHH
T ss_pred CEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHH
Confidence 555555555443 5689999999999 99998852 111 00000000000000 0001123789999
Q ss_pred HHHHhcCCccceEEEcC
Q 017835 339 KLFFEAGFSDYKITDVL 355 (365)
Q Consensus 339 ~ll~~aGf~~~~~~~~~ 355 (365)
++++++||++..+...+
T Consensus 169 ~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 169 KTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHTEEEEEEEECS
T ss_pred HHHHHCCCEEEEEEEcc
Confidence 99999999988876553
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-10 Score=107.01 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=79.2
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-----------------CCCeEEEeC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-----------------NGNLKYVGG 250 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~i~~~~~ 250 (365)
++..+. ..++.+|||||||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+
T Consensus 97 ~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 97 ILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 445555 677889999999999999999998 57789999999 888887764 158999999
Q ss_pred CCCCC---CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 251 NMFEA---IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 251 d~~~~---~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+.+. ++ .||+|++.. +.+ ..+++++.++|+| ||++++....
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~~~~ 221 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVYVVN 221 (336)
T ss_dssp CTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEEESS
T ss_pred ChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEEeCC
Confidence 99873 33 499999843 222 2378999999999 8999887653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.8e-10 Score=101.88 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=75.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 456789999999999999988886 4568999999667777664 3689999999987 555 4999999865
Q ss_pred cccCC-hhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 268 LHNWN-DEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 268 lh~~~-~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
.+++. ......+++++.++|+| ||.++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 142 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence 55432 22346789999999999 88876
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=101.62 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------------CCCeEEEeCCCCCC----CC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------------NGNLKYVGGNMFEA----IP- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~~----~~- 257 (365)
.+++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999999999999999998 777776642 25899999999872 32
Q ss_pred -CceEEEeccccccCChhHH-----------HHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 -PADAVLIKCVLHNWNDEEC-----------VKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~-----------~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+|.|++. ++++.. ..+++++.++|+| ||.|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 37777643 233311 3799999999999 8888884
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=100.14 Aligned_cols=103 Identities=12% Similarity=0.170 Sum_probs=79.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C-CC-CceEEEec-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A-IP-PADAVLIK- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~~-~~D~i~~~- 265 (365)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56788999999999999999999875 579999999 888887764 3579999999987 2 23 59999983
Q ss_pred -----ccccc-------CChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 -----CVLHN-------WNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 -----~vlh~-------~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.++++ |+..+ ..++|+++.+.|+| ||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 23332 22221 15899999999999 89888866544
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-10 Score=94.95 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=72.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC-------CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP-------PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-------~~D~i~~~~ 266 (365)
++.+|||+|||+|.++..+++..+. ++++|. +.+++.+++ ..+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999998654 999999 888888775 2289999999876211 599999988
Q ss_pred ccccCChhHHHHHHHHHH--HhcccCCCCcEEEEEeee
Q 017835 267 VLHNWNDEECVKILKNCK--KAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~--~~L~p~~~gG~lli~e~~ 302 (365)
++| -..+ ++++.+. ++|+| ||.+++....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPK 149 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCC
Confidence 776 2222 3455555 99999 8887775543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=95.41 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=75.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C-CCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I-PPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~-~~~D~i~~~~ 266 (365)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45689999999999999999887 5679999999 888888775 24799999998772 2 3599999987
Q ss_pred ccccCChhHHHHHHHHHH--HhcccCCCCcEEEEEeee
Q 017835 267 VLHNWNDEECVKILKNCK--KAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~--~~L~p~~~gG~lli~e~~ 302 (365)
.+|. ....++++.+. ++|+| ||.+++....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDK 140 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECC
Confidence 6542 22355667776 89999 8888776544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-09 Score=95.61 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=78.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C---------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I--------- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~--------- 256 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+ + .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 45678999999999999999999987 789999999 888887764 2469999999865 2 1
Q ss_pred --------CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 257 --------PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 257 --------~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
..||+|++.... +....+|+++.+.|+| ||++++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 459999987543 3446789999999999 88888766544
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.5e-10 Score=97.47 Aligned_cols=95 Identities=8% Similarity=0.147 Sum_probs=75.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------C-CCeEEEeCCCCC---CC--CCceEEEec
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------N-GNLKYVGGNMFE---AI--PPADAVLIK 265 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~---~~--~~~D~i~~~ 265 (365)
..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ . ++++++.+|..+ .. ..||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 889999999 888888774 3 589999999876 23 259999886
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
... .....+++++.+.|+| ||.|++-+..+
T Consensus 137 ~~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRR---GGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence 432 2336789999999999 77777644433
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=97.70 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=77.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--CC-CCceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--AI-PPADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~-~~~D~i~~~~ 266 (365)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 4568999999999999999999987 889999999 888888774 3579999999875 22 1299998863
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
. ......+++++.++|+| ||.+++.+...
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 2 22346889999999999 88877755544
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-09 Score=100.51 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=83.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC--C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI--P 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~--~ 257 (365)
.++.... ..++.+|||+|||+|.+++.++... |+.+++++|+ +.+++.+++ ..+++++.+|+.+ +. +
T Consensus 194 ~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~ 271 (354)
T 3tma_A 194 ALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP 271 (354)
T ss_dssp HHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred HHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence 3444444 5678899999999999999999987 8899999999 888888875 2389999999988 33 3
Q ss_pred CceEEEeccccccC-C-hhH----HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNW-N-DEE----CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~-~-~~~----~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++.-..+.. . ... ...+++++++.|+| ||+++++..
T Consensus 272 ~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t~ 318 (354)
T 3tma_A 272 EVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLTL 318 (354)
T ss_dssp CCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEES
T ss_pred CCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 58999996544321 1 111 26789999999999 899998643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-10 Score=93.81 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=74.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-------CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-------IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-------~~~~D~i~ 263 (365)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4568999999999999998887 45679999999 888888774 25799999998772 23599999
Q ss_pred eccccccCChhHHHHHHHHH--HHhcccCCCCcEEEEEeee
Q 017835 264 IKCVLHNWNDEECVKILKNC--KKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i--~~~L~p~~~gG~lli~e~~ 302 (365)
+...++.... ...++.+ .++|+| ||.+++....
T Consensus 122 ~~~~~~~~~~---~~~~~~l~~~~~L~~---gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYAKQEI---VSQLEKMLERQLLTN---EAVIVCETDK 156 (187)
T ss_dssp ECCCGGGCCH---HHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred ECCCCCchhH---HHHHHHHHHhcccCC---CCEEEEEeCC
Confidence 9877553333 3455555 788999 8888776543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.7e-10 Score=95.12 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=78.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~ 270 (365)
.+..+|||||||+|-++..+. |..+++++|+ +.+++.++. ..+.++...|... +.+ .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 567899999999999998877 8899999999 889998875 5677889999998 444 4999999999999
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.+.+....+ ++.+.|++ ++++|.=+
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcC
Confidence 9877655555 88889998 45555444
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-10 Score=97.59 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=79.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---C------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---I------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~------~~~ 259 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ ..+++++.+|+.+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999887 789999999 888887764 36899999998652 1 469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|+|++... ......+++++.+.|+| ||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 99998543 33346789999999999 88887766544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.4e-10 Score=96.05 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=75.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------C--CCeEEEeCCCCC--CC---CC-ceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------N--GNLKYVGGNMFE--AI---PP-ADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~i~~~~~d~~~--~~---~~-~D~i~~ 264 (365)
++.+|||+|||+|.++..++.... .+++++|+ +.+++.+++ . .+++++.+|+.+ +. .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 567999999999999998777643 58999999 888888875 2 689999999876 21 36 999999
Q ss_pred ccccccCChhHHHHHHHHH--HHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNC--KKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i--~~~L~p~~~gG~lli~e~~~ 303 (365)
...+| ..+ ..++++.+ .++|+| ||.+++.....
T Consensus 132 ~~~~~-~~~--~~~~l~~~~~~~~Lkp---gG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-FNL--AEQAISLLCENNWLKP---NALIYVETEKD 166 (201)
T ss_dssp CCCSS-SCH--HHHHHHHHHHTTCEEE---EEEEEEEEESS
T ss_pred CCCCC-Ccc--HHHHHHHHHhcCccCC---CcEEEEEECCC
Confidence 87754 333 36788888 567999 88887765443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=95.28 Aligned_cols=103 Identities=10% Similarity=0.245 Sum_probs=75.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCC------------
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAI------------ 256 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~------------ 256 (365)
++.+.+. .++++.+|||+|||+|.++..+++. ..+++++|+.++ ....+++++.+|+.+..
T Consensus 15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 4555554 2467899999999999999999988 779999998443 12468999999998732
Q ss_pred --CCceEEEeccccc---cCC------hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 --PPADAVLIKCVLH---NWN------DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 --~~~D~i~~~~vlh---~~~------~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..||+|++..... ++. .+.+..+|+.+.++|+| ||++++..+
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~ 140 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF 140 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence 3699999853221 111 12245788999999999 888876543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=93.36 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=77.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCC----
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-----PHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAI---- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~---- 256 (365)
..++.+|||||||+|.++..+++.. |..+++++|. +.+++.+++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4667899999999999999999986 5679999999 888887764 258999999998743
Q ss_pred ---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 ---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 ---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..||+|++...++++ ++++.+.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence 259999999998864 3678899999 898888754
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-10 Score=96.58 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=76.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCCC--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP------HIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~~-- 257 (365)
..++.+|||||||+|.++..+++..+ ..+++++|. +.+++.+++ ..+++++.+|..++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 46678999999999999999998754 369999998 888887764 2589999999987543
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.||+|++...++++. +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 599999999998765 568899999 88888754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=9e-10 Score=93.36 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHHHhcccCCCeEEE-eCCCCCC---------CC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH---------IECTVFDQPHVVADLKSNGNLKYV-GGNMFEA---------IP- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~i~~~-~~d~~~~---------~~- 257 (365)
+.++.+|||||||+|.++..+++.++. .+++++|+.++. ...+++++ .+|+.+. .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 467789999999999999999999765 799999985421 13678899 9998762 22
Q ss_pred -CceEEEecccccc----CChhH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 -PADAVLIKCVLHN----WNDEE-----CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 -~~D~i~~~~vlh~----~~~~~-----~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||+|++...+|. ..+.. ...+++++.++|+| ||++++..+
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 5999998654432 12221 14789999999999 898888654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=97.52 Aligned_cols=101 Identities=13% Similarity=0.307 Sum_probs=81.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCC-CC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-AI 256 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~ 256 (365)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+|+.+ +.
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 4455555 677889999999999999999986 57889999999 888877764 2589999999987 34
Q ss_pred C--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 P--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 ~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+ .||+|++ +.+++ .++|+++.++|+| ||++++..+
T Consensus 168 ~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~ 204 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVA 204 (280)
T ss_dssp CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEES
T ss_pred CCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeC
Confidence 3 5999998 23444 4789999999999 899998775
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-10 Score=112.29 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=81.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----C--CCeEEEeCCCCC---CCC--CceEEEecc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----N--GNLKYVGGNMFE---AIP--PADAVLIKC 266 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~i~~~~~d~~~---~~~--~~D~i~~~~ 266 (365)
.++.+|||||||+|.++..|++. +.+|+|+|. +.+++.|+. . .+|++.++++.+ +.+ .||+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999998 789999999 888888774 2 368999998876 232 599999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+|||.+++....-+.++.+.|++ +++.+++..+.
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~ 176 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAV 176 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCC
T ss_pred chhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecc
Confidence 99999988655556678888888 67777766544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-11 Score=106.91 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=96.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC-CCceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI-PPADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-~~~D~i~~~~vl 268 (365)
.++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +. ..||+|++..++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 36789999999999999999987 489999999 888888775 1589999999987 32 369999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
|+.++.. ..+.+++++|+| ||.+++ +......... . ..-.+....+++.+++...|...
T Consensus 155 ~~~~~~~--~~~~~~~~~L~p---gG~~i~-~~~~~~~~~~--------~-------~~lp~~~~~~~~~~~l~~~g~~~ 213 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSP---DGFEIF-RLSKKITNNI--------V-------YFLPRNADIDQVASLAGPGGQVE 213 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSS---CHHHHH-HHHHHHCSCE--------E-------EEEETTBCHHHHHHTTCTTCCEE
T ss_pred CCcchhh--hHHHHHHhhcCC---cceeHH-HHHHhhCCce--------E-------EECCCCCCHHHHHHHhccCCCEE
Confidence 9877653 367789999999 887443 3211000000 0 01122336778888888777665
Q ss_pred ceEEEcCCc
Q 017835 349 YKITDVLGV 357 (365)
Q Consensus 349 ~~~~~~~~~ 357 (365)
+......+.
T Consensus 214 i~~~~~~~~ 222 (241)
T 3gdh_A 214 IEQNFLNNK 222 (241)
T ss_dssp EEEEEETTE
T ss_pred EEehhhcCc
Confidence 555555544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-10 Score=98.29 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=78.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C-------CC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I-------PP 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------~~ 258 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++|+++.+|..+ + . ..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34668999999999999999999987 789999999 888887774 3589999999875 2 2 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
||+|++... ......+++++.+.|+| ||.|++-+..+
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 999998643 22347889999999999 88887755444
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=96.59 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=80.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-CC-CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-IP-PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-~~-~~D~i~~~~vl 268 (365)
+.++.+|||+|||+|.++..+++..+..+++++|. +.+++.+++ ..++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 888888875 35789999999874 22 59999987543
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
...++++++.+.|+| ||.+++.+....
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~ 223 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAE 223 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCcc
Confidence 235678999999999 898888776543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-09 Score=93.13 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=80.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC-C--C
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI-P--P 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-~--~ 258 (365)
++..++ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..++++..+|+.+.. + .
T Consensus 83 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 83 IALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 344444 567889999999999999999998 779999998 888887764 268999999998855 4 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
||+|++. .+++ ..+++++.++|+| ||++++..+.
T Consensus 159 ~D~v~~~-----~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VREP--WHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred ccEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 9999972 3333 4679999999999 8999987753
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.9e-10 Score=97.84 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=71.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc--CC------CeEEE--eCCCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS--NG------NLKYV--GGNMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~i~~~--~~d~~~-~~~~~D~i~~~~ 266 (365)
+.++.+|||||||+|.++..+++. .+++++|+.++...+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 567889999999999999998887 68999999545433322 11 68888 899987 433599999976
Q ss_pred ccccCChh----H-HHHHHHHHHHhcccCCCCc--EEEEEee
Q 017835 267 VLHNWNDE----E-CVKILKNCKKAIAINGKAG--KVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~----~-~~~~L~~i~~~L~p~~~gG--~lli~e~ 301 (365)
. ++.... . ...+|+.+.++|+| || .+++-.+
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence 6 433221 1 12488999999999 89 7777443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=92.55 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=76.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCC---CCceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAI---PPADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~---~~~D~ 261 (365)
..++.+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 6679999999 888887763 248999999987632 25999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 262 VLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|++...++++. +++.+.|+| ||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence 99998887654 578899999 898888654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-10 Score=98.52 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=71.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc--CC------CeEEE--eCCCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS--NG------NLKYV--GGNMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~i~~~--~~d~~~-~~~~~D~i~~~~ 266 (365)
++++.+|||||||+|.++..+++. .+++++|+.++...+++ .. +++++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 567889999999999999999887 58999999545433322 11 68898 899876 433599999986
Q ss_pred ccccCChh----H-HHHHHHHHHHhcccCCCCc--EEEEEee
Q 017835 267 VLHNWNDE----E-CVKILKNCKKAIAINGKAG--KVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~----~-~~~~L~~i~~~L~p~~~gG--~lli~e~ 301 (365)
. ++...+ . ...+|+.+.++|+| || .+++..+
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence 6 433221 1 12479999999999 89 7777443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.6e-10 Score=99.51 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=77.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~ 258 (365)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 44555555 5677899999999999999999984 58999999 888887764 1579999999998 6778
Q ss_pred ceEEEeccccccCChhHHHHHHH--------------HH--HHhcccCCCCcEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILK--------------NC--KKAIAINGKAGKVI 297 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~--------------~i--~~~L~p~~~gG~ll 297 (365)
||+|+++ ..++|+.+...++|. ++ +++++| ||+++
T Consensus 94 fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~y 144 (285)
T 1zq9_A 94 FDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKLY 144 (285)
T ss_dssp CSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTTC
T ss_pred hcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCccc
Confidence 9998884 444566655555553 23 368899 88653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=98.15 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=77.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCC---CC-CceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEA---IP-PADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~~-~~D~i~ 263 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..|++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 888887764 36899999998762 23 599999
Q ss_pred eccccccCChhHH--HHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDEEC--VKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~~~--~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+....+..+.... .+++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8654432222222 5899999999999 7887775
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.6e-10 Score=96.42 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=78.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CC------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AI------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~------~~~ 259 (365)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+ .. ..|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34567999999999999999999987 789999999 888887764 3579999999754 11 459
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
|+|++... .+....+++++.+.|+| ||.|++.+..+.
T Consensus 150 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~ 186 (232)
T 3cbg_A 150 DLIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH 186 (232)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred CEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence 99998653 23457889999999999 788777665443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=95.09 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=77.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC--C-C-------CC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE--A-I-------PP 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------~~ 258 (365)
..+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++++++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 35678999999999999999999987 789999999 888887764 3579999999876 2 2 35
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
||+|++.. +......+++++.+.|+| ||.|++-+..
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL 183 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence 99999853 233457899999999999 7776664443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.2e-09 Score=98.06 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=72.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh 269 (365)
-++++|||||||+|.++...++.. ..+++++|..++++.|++ .++|+++.+|+.+ +.| .+|+|++-..-+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred cCCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence 346799999999999988766653 358999998667776664 5789999999988 666 599998854433
Q ss_pred cCC-hhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 270 NWN-DEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 270 ~~~-~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.+. ......++....+.|+| ||.++-
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp---~G~~iP 187 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKE---GGLLLP 187 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEE---EEEEES
T ss_pred cccccchhhhHHHHHHhhCCC---CceECC
Confidence 332 22456788888899999 777653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=99.02 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=78.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCC----CCCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEA----IPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~----~~~~D~i 262 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 888887663 35899999998762 2359999
Q ss_pred Eecccccc---CChhH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHN---WNDEE--CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~---~~~~~--~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++....|. -+... ..+++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99766543 11111 36889999999999 88888763
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=97.52 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=76.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC--C-C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE--A-I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-~~~D~i~ 263 (365)
.+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ + . ..||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3468999999999999999998777789999999 888887764 3689999999876 2 2 3599999
Q ss_pred eccccccCChhH--HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDEE--CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+....+..+... ..+++++++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 965443222111 25789999999999 7777664
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=91.15 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=73.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--CCC--CceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--AIP--PADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~~~--~~D~i~~~~vl 268 (365)
++.+|||+|||+|.++..++.... .+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 468999999999999998877643 48999999 889888875 2589999999876 332 59999998775
Q ss_pred ccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 017835 269 HNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIK 302 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~ 302 (365)
| ... ..++++.+.+ +|+| ||.+++....
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 4 333 3567788866 4999 7877765543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=98.20 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=81.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC--CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP--PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~--~~D~i~~ 264 (365)
..++.+|||+|||+|..+..++...++ .+++++|+ +..++.+++ ..+++++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 567789999999999999999999877 79999999 777777654 3579999999987 2 43 4999996
Q ss_pred ------ccccccCChh-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 265 ------KCVLHNWNDE-------EC-------VKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 265 ------~~vlh~~~~~-------~~-------~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
..++++.++. +. .++|+++.+.|+| ||+|++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 3445543332 11 5789999999999 899988776553
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=99.07 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=73.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCC----CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEA----IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~----~~~~D~i~ 263 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..|++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999888889999999 888887764 35899999998762 23599999
Q ss_pred eccccccCChh-HH--HHHHHHHHHhcccCCCCcEEEEEe
Q 017835 264 IKCVLHNWNDE-EC--VKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 264 ~~~vlh~~~~~-~~--~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+...- ++... .. .+++++++++|+| ||.+++..
T Consensus 187 ~d~~~-~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSD-PVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCC-CCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 85543 33322 11 6899999999999 77777653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=99.42 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=76.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CC--CCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AI--PPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~--~~~D~i 262 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|+.+ .. ..||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 888887764 3589999999875 23 259999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCVLHNWNDEE--CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~vlh~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++....+....+. ..+++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854421111111 36899999999999 7877775
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=97.30 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=74.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------------CCCeEEEeCCCCCC---CCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------------NGNLKYVGGNMFEA---IPP 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~~---~~~ 258 (365)
.++.+|||||||+|..+..+++. |..+++++|+ +.+++.+++ ..+++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999998 8889999999 888877653 35799999997652 235
Q ss_pred ceEEEeccccccCChhH--HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 259 ADAVLIKCVLHNWNDEE--CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~--~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
||+|++....+..+... ..+++++++++|+| ||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 99999865543222122 26789999999999 7877765
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=98.42 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=74.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC--C-C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE--A-I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-~~~D~i~ 263 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+ + . ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 888887763 4689999999865 2 2 3599999
Q ss_pred eccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 264 IKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 264 ~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 86544322211 125789999999999 78777654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=98.71 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=75.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCC---C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEA---I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~-~~~D~i~ 263 (365)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+. . ..||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878889999999 888887764 25899999998762 2 3599999
Q ss_pred eccccccCCh-hHH--HHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWND-EEC--VKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~-~~~--~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+...- ++.. ... .+++++++++|+| ||.+++.
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 86432 2221 111 6899999999999 7777764
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=98.20 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=69.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHHhcc--c--CCCeEEEeC-CCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-----PHVVADLK--S--NGNLKYVGG-NMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~--~~~i~~~~~-d~~~-~~~~~D~i~~~~ 266 (365)
++++.+|||||||+|.++..+++. .+++++|. +.+++... . .++++++.+ |+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 567789999999999999999887 47999997 43333222 1 257999999 8887 444699999976
Q ss_pred ccc---cCChhH-HHHHHHHHHHhcccCCCCcEEEE
Q 017835 267 VLH---NWNDEE-CVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 267 vlh---~~~~~~-~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.++ +..+.. ...+|+.++++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 553 222222 22689999999999 887776
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-09 Score=89.03 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=67.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCCCCceEEEeccccccCChhHH
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+-...||+|++...+|++.+...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 45689999999999999999887 4457999999 889988876 33899999999873246999999999999876544
Q ss_pred HHHHHHHHHhc
Q 017835 277 VKILKNCKKAI 287 (365)
Q Consensus 277 ~~~L~~i~~~L 287 (365)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 57788887776
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.7e-09 Score=93.54 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=78.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C------CCCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A------IPPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~------~~~~D~i 262 (365)
..++.+|||+|||+|..+..+++..++ .+++++|. +.+++.+++ ..+++++.+|+.+ + ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 567789999999999999999998876 79999999 777877664 3489999999876 2 2359999
Q ss_pred Eeccc------ccc---CCh-------hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 263 LIKCV------LHN---WND-------EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 263 ~~~~v------lh~---~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
++.-. ++. |+. ....++|+++.+.|+| ||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCC
Confidence 98622 221 111 1226899999999999 88888876544
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-08 Score=85.40 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=70.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCCCceEEEeccccccCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIPPADAVLIKCVLHNWN 272 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~ 272 (365)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .-+++++.+|+.+-...||+|++...+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 456899999999999999998873 348999999 888888775 1179999999987323699999998888876
Q ss_pred hhHHHHHHHHHHHhc
Q 017835 273 DEECVKILKNCKKAI 287 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L 287 (365)
......+++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 544467888888876
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-09 Score=95.65 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=73.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC--C-C-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE--A-I-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-~~~D~i~ 263 (365)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|+.+ + . ..||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3458999999999999999999878889999999 888887664 3689999999765 2 2 2599999
Q ss_pred eccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+...-+..... ...+++++++++|+| ||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 85332201111 126889999999999 7877774
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.3e-09 Score=92.51 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=73.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCCCCCCceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFEAIPPADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~~~~~D~i~~~~v 267 (365)
....+|||||||+|..+..+++. + .+++++|+ +.+++.+++ .+|++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 34589999999999999999988 7 89999999 889988874 258999999987733569999985
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+++ ..+++++++.|+| ||.+++.
T Consensus 147 ---~~dp--~~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPD--IHRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCC--HHHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCCh--HHHHHHHHHhcCC---CcEEEEE
Confidence 2444 3489999999999 7887774
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-08 Score=92.96 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=89.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
.++.+|||+|||+|.++..++...+..+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++.-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 5678999999999999999999987779999999 889988875 2589999999988 443 5999999655
Q ss_pred cccCC-----hhH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHH
Q 017835 268 LHNWN-----DEE-CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLF 341 (365)
Q Consensus 268 lh~~~-----~~~-~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 341 (365)
.+... .++ -.++++.++++| + |+++++.. +.+.+.+.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~----g~~~~i~~-------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E----KRGVFITT-------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E----EEEEEEES-------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C----CeEEEEEC-------------------------------CHHHHHHHH
Confidence 43221 111 267888999988 5 44444321 234556788
Q ss_pred HhcCCccceEEEc
Q 017835 342 FEAGFSDYKITDV 354 (365)
Q Consensus 342 ~~aGf~~~~~~~~ 354 (365)
.+.||+..+...+
T Consensus 340 ~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 340 AENGFEIIHHRVI 352 (373)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCEEEEEEEE
Confidence 8999998877666
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-08 Score=89.30 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=89.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC--CCceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI--PPADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~--~~~D~i~~~~v 267 (365)
.+++.+|||+|||+|.+++.++... ..+++++|+ |..++.+++ .++++++.+|..+-. ..||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 4678999999999999999998873 568999999 888887774 578999999998732 35999987543
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
. ...++|..+.+.|+| ||.|.+.+.+..+... ....+.++++.++.|++
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~~----------------------~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEEeeecccccc----------------------hhHHHHHHHHHHHcCCc
Confidence 2 124678888899999 8888777665322111 11346677888899987
Q ss_pred cc
Q 017835 348 DY 349 (365)
Q Consensus 348 ~~ 349 (365)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=92.68 Aligned_cols=97 Identities=16% Similarity=0.314 Sum_probs=71.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~~~ 259 (365)
..+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 44555555 567789999999999999999987 568999999 888887764 2689999999988 56689
Q ss_pred eEEEeccccccCChhHHHHHH---------------HHHHHhccc
Q 017835 260 DAVLIKCVLHNWNDEECVKIL---------------KNCKKAIAI 289 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L---------------~~i~~~L~p 289 (365)
|+|++. ..+++..+...+++ ..+.++++|
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 999875 45557777666666 346677877
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=93.63 Aligned_cols=100 Identities=11% Similarity=0.183 Sum_probs=81.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCC--CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-----IECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIP--PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~--~~D~i~~~ 265 (365)
.+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++.++.+|.+++.+ .||+|++.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35679999999999999999988764 78999999 888887764 3378999999988543 59999999
Q ss_pred cccccCChhHH----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEEC----------------VKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~~----------------~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
-.+++++.++. ..+++++.+.|+| ||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 88777654432 2589999999999 898888764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.1e-08 Score=93.85 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=77.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~-~~D~i~~~ 265 (365)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. +.++.+|..+ + .+ .||+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 567889999999999999999998765 69999999 888887764 34 8899999876 2 23 59999962
Q ss_pred ------ccc-------ccCChhHH-------HHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 ------CVL-------HNWNDEEC-------VKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ------~vl-------h~~~~~~~-------~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.++ ..|+.+.. .++|+++.+.|+| ||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence 122 22333222 6799999999999 88888766544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=89.04 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=80.5
Q ss_pred ccCCCeEEEecC------CccHHHHHHHHHCC-CCeEEEeechHHHHhcccCCCeEE-EeCCCCC-CCC-CceEEEeccc
Q 017835 198 FEGLNTLVDVGG------GTGTLASAIAKKFP-HIECTVFDQPHVVADLKSNGNLKY-VGGNMFE-AIP-PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~i~~-~~~d~~~-~~~-~~D~i~~~~v 267 (365)
++++.+|||+|| |+|. ..+++..| +.+++++|+.+. . .++++ +.+|+.+ +.+ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---v---~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---V---SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---B---CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---C---CCCEEEEECccccCCccCcccEEEEcCC
Confidence 567889999999 4477 44566666 689999999433 1 47889 9999987 444 5999998643
Q ss_pred ccc--------CC-hhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHH
Q 017835 268 LHN--------WN-DEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWA 338 (365)
Q Consensus 268 lh~--------~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 338 (365)
.+. .. ......+|++++++|+| ||++++..+... ...++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~l~ 181 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNADLY 181 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHHHH
Confidence 221 11 22345899999999999 888887543210 123666
Q ss_pred HHHHhcCCccceEE
Q 017835 339 KLFFEAGFSDYKIT 352 (365)
Q Consensus 339 ~ll~~aGf~~~~~~ 352 (365)
+++++.||..+++.
T Consensus 182 ~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 182 KLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHHHcCCcEEEEE
Confidence 77777788766555
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-08 Score=93.71 Aligned_cols=97 Identities=7% Similarity=-0.011 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCC--CCceEEEeccccc-----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAI--PPADAVLIKCVLH----- 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~--~~~D~i~~~~vlh----- 269 (365)
.+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.+.. ..||+|++.-...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCcccc
Confidence 345699999999999999999886 6789999999 7777666 68999999998843 3599999952221
Q ss_pred -----cCChhHH-----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 017835 270 -----NWNDEEC-----------------VKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 270 -----~~~~~~~-----------------~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|++++.. ..+++++.+.|+| ||++.++-+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 1223221 2568999999999 898888765
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=87.27 Aligned_cols=89 Identities=10% Similarity=0.280 Sum_probs=64.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC-Cce
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP-PAD 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~-~~D 260 (365)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++ ..+
T Consensus 20 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 20 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 44555555 5677899999999999999999985 78999999 888888775 3689999999988 555 233
Q ss_pred EEEeccccccCChhHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L 280 (365)
..++++..++++.+...+++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l 115 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIV 115 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHH
T ss_pred eEEEEeCCcccCHHHHHHHH
Confidence 34555555555544434443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-08 Score=93.72 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=80.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC---CC--CceEEEec-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA---IP--PADAVLIK- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~~--~~D~i~~~- 265 (365)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 46778999999999999999999998889999999 777776654 33588999999873 33 59999962
Q ss_pred -----cccccCChh-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 -----CVLHNWNDE-------EC-------VKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 -----~vlh~~~~~-------~~-------~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.++++.++. +. .++|+++.+.|+| ||++++.+....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 344443331 11 4889999999999 899888776543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-08 Score=89.84 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=73.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CC-CeEEEeCCCCCC-------CCCceEEE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NG-NLKYVGGNMFEA-------IPPADAVL 263 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~i~~~~~d~~~~-------~~~~D~i~ 263 (365)
++.+|||+|||+|.++..++... .+++++|+ +.+++.+++ .+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999863 49999999 888888774 22 599999999872 23599999
Q ss_pred eccccccC--------ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNW--------NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~--------~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.-..... ..+...++++++.++|+| ||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEEC
Confidence 94321110 122346899999999999 888776554
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=89.52 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC-CceEEEec--
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP-PADAVLIK-- 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~-~~D~i~~~-- 265 (365)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..+ + .+ .||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 788999999999999999999875 579999999 888877764 3579999999987 2 34 59999982
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 ----CVL-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ----~vl-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.++ .+|+.+. ..++|+++.++||| ||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccC
Confidence 222 2343322 24789999999999 89888876544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=90.58 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=77.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~-~~D~i~~~ 265 (365)
..++.+|||+|||+|..+..++...+ ..+++++|+ +..++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 56788999999999999999998865 479999999 777777664 4579999999876 2 33 59999983
Q ss_pred c------cccc-------CChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 266 C------VLHN-------WNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 266 ~------vlh~-------~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
- ++.. |+.+. ..++|+++.+.|+| ||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence 2 2211 21111 13889999999999 88888766544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-08 Score=89.77 Aligned_cols=104 Identities=14% Similarity=0.273 Sum_probs=76.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC---C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP---P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~---~ 258 (365)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 45556665 5677899999999999999999984 79999999 888887775 3579999999988 554 2
Q ss_pred ceEEEeccccccCChhHHHHHH--------------HHHHHhcccCCCCcEEEEEe
Q 017835 259 ADAVLIKCVLHNWNDEECVKIL--------------KNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L--------------~~i~~~L~p~~~gG~lli~e 300 (365)
| +++++.-++.+.+....++ +.+.++|+| ||++.++.
T Consensus 95 f--~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 95 Y--KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp E--EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred c--EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 5 3344444444444434443 568899999 88876653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=84.67 Aligned_cols=88 Identities=13% Similarity=0.233 Sum_probs=67.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~ 259 (365)
..+++.+. ..++.+|||||||+|.++..|++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 44555555 567889999999999999999998 578999999 888888775 4799999999998 555 39
Q ss_pred eEEEeccccccCChhHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L 280 (365)
|+|+++. -++++.+-..++|
T Consensus 116 D~Iv~Nl-Py~is~pil~~lL 135 (295)
T 3gru_A 116 NKVVANL-PYQISSPITFKLI 135 (295)
T ss_dssp SEEEEEC-CGGGHHHHHHHHH
T ss_pred cEEEEeC-cccccHHHHHHHH
Confidence 9998654 3445554333333
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=87.01 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=75.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCceEEEecccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPADAVLIKCVLHN 270 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~D~i~~~~vlh~ 270 (365)
.++.+|||+|||+|.++.. ++ ...+++++|. +.+++.+++ .++++++.+|+.+....||+|++...-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 4678999999999999998 76 4779999999 888888775 258999999998754669999985321
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
...++++.+.+.|+| ||.+++.+...
T Consensus 269 ----~~~~~l~~~~~~L~~---gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEE---GGVIHYYTIGK 294 (336)
T ss_dssp ----TGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred ----hHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence 123789999999999 88888877654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3e-08 Score=93.18 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=73.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CC-CeEEEeCCCCCCC------C-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NG-NLKYVGGNMFEAI------P-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~i~~~~~d~~~~~------~-~~D~i 262 (365)
.++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++ .+ +++++.+|+++.. . .||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999863 238999999 888888775 22 8999999987621 2 59999
Q ss_pred Eecccc-----ccCCh--hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVL-----HNWND--EECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vl-----h~~~~--~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++.-.. ++..+ ....++++.+.+.|+| ||.|++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 985332 12222 2335688899999999 77776654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=89.18 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=74.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------C-C-CeEEEeCCCCCC-------CCCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------N-G-NLKYVGGNMFEA-------IPPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-~i~~~~~d~~~~-------~~~~D~i 262 (365)
.++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++ . . +++++.+|+++. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999874 458999999 888888774 2 3 799999998872 1359999
Q ss_pred EeccccccCC-------hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWN-------DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~-------~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++.-.....+ .....+++.++.+.|+| ||.+++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 9863221110 13457889999999999 78777755
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=88.66 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=76.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------C-CCeEEEeCCCCCC-------CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------N-GNLKYVGGNMFEA-------IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~i~~~~~d~~~~-------~~~~D~i~ 263 (365)
.++.+|||+|||+|.++..++.. +..+++++|+ +.+++.+++ . ++++++.+|+++. ...||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 36789999999999999999986 3458999999 888888775 1 2899999998762 12599999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+.-..+..+. ....++++++.+.|+| ||.+++...
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 336 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 336 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 8543322221 3456789999999999 888877764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=87.71 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-------CCCceEEEec
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-------IPPADAVLIK 265 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-------~~~~D~i~~~ 265 (365)
++.+|||+|||+|.++..++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 568999999 888888775 24599999998872 1259999985
Q ss_pred cccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
-..+..+. ....++++++.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 33222111 3346789999999999 888887664
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=80.55 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=92.9
Q ss_pred CCeEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechHHH--------Hhccc--------------CC
Q 017835 201 LNTLVDVGGGTGTLASAI--------AKKF-------PHIECTVFDQPHVV--------ADLKS--------------NG 243 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~~--------~~a~~--------------~~ 243 (365)
..+|+|+|||+|..+..+ .+++ |.+++..-|+|..- ...++ .-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999998876 3333 78889998985321 11110 01
Q ss_pred CeEEEeCCCCC-CCC--CceEEEeccccccCChh------------------------------------HHHHHHHHHH
Q 017835 244 NLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE------------------------------------ECVKILKNCK 284 (365)
Q Consensus 244 ~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~------------------------------------~~~~~L~~i~ 284 (365)
-+.-+++.|.. .+| ++|+|+++.+||-+++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12346677766 455 49999999999966521 3345799999
Q ss_pred HhcccCCCCcEEEEEeeecCCCccCcc------c-h-hhhhhhhhhhhhc--------cC--ccccCHHHHHHHHH-hcC
Q 017835 285 KAIAINGKAGKVIIIDIKMESEKADYK------T-T-ETQLFMDMLMMVL--------VK--GEERNEKEWAKLFF-EAG 345 (365)
Q Consensus 285 ~~L~p~~~gG~lli~e~~~~~~~~~~~------~-~-~~~~~~d~~~~~~--------~~--~~~~t~~e~~~ll~-~aG 345 (365)
+.|+| ||++++.-...++...... + . ....+.++..... ++ --.++.+|++++++ +.|
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGS 289 (374)
T ss_dssp HHEEE---EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCS
T ss_pred HHhCC---CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCC
Confidence 99999 8888887665544211100 0 0 0001111111100 11 11259999999998 589
Q ss_pred CccceEEEc
Q 017835 346 FSDYKITDV 354 (365)
Q Consensus 346 f~~~~~~~~ 354 (365)
|++.++...
T Consensus 290 F~I~~le~~ 298 (374)
T 3b5i_A 290 FAIDKLVVY 298 (374)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 998776544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=83.94 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=66.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC-----C--CceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI-----P--PADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~-----~--~~D~i~ 263 (365)
..+..+|||+|||+|.++..|++. ..+++++|. +.+++.|++ ..+++++.+|+.+.. + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456789999999999999999987 679999999 888888874 348999999998732 1 499999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+.--- ..+.++++.+.+ ++| ++.+++
T Consensus 362 ~dPPr-----~g~~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 362 LDPAR-----AGAAGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp ECCCT-----TCCHHHHHHHHH-HCC---SEEEEE
T ss_pred ECCCC-----ccHHHHHHHHHh-cCC---CeEEEE
Confidence 84222 112345555544 677 555544
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.2e-07 Score=84.72 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=72.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCC---CC-CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEA---IP-PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~~-~~D~i~~~~vl 268 (365)
+++.+|||+|||+|.++..++.. +.+++++|+ +.+++.+++ .-...+..+|+++. .+ .||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 45789999999999999999987 455999999 888888775 12235678898772 22 49999986433
Q ss_pred ccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 269 HNWND-------EECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 269 h~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
...+. ..-.++++.+.+.|+| ||.|++....
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 21111 1235788999999999 8888876653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.9e-07 Score=84.41 Aligned_cols=111 Identities=11% Similarity=0.053 Sum_probs=80.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH--------------------------------------IECTV 229 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 229 (365)
..++.... +.+...|||.+||+|.++++++....+ .++++
T Consensus 191 a~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 191 AALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 33444445 467789999999999999998876443 56999
Q ss_pred eec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecccccc-CC-hhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 230 FDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN-WN-DEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 230 ~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~-~~-~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+|. +.+++.++. .++++++.+|+.+ +.+ .||+|++.--.+. +. .++...+.+.+.+.|++ -+|++++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEE
Confidence 999 889988875 3579999999988 333 5999999744322 12 24556677777777765 3378888
Q ss_pred EEee
Q 017835 298 IIDI 301 (365)
Q Consensus 298 i~e~ 301 (365)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8764
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.1e-07 Score=79.85 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=68.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-CCC---Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-AIP---PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~~---~~ 259 (365)
..+++.+. ..++ +|||||||+|.++..|++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 44555555 5667 99999999999999999984 68999999 888888775 4689999999988 554 46
Q ss_pred eEEEeccccccCChhHHHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKILKN 282 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~ 282 (365)
|.|+ .+.-++++.+-..++|..
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhcC
Confidence 6654 455666777766666655
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-07 Score=88.33 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=77.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHHhccc------CC--CeEEEeCCCCCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-------------PHIECTVFDQ-PHVVADLKS------NG--NLKYVGGNMFEA 255 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~--~i~~~~~d~~~~ 255 (365)
..++.+|+|.|||+|.++..+.+.. +..+++|+|+ +.++..++. .. ++.+.++|.+..
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 3556799999999999999988763 4568999999 888877763 12 788999999883
Q ss_pred -CC-CceEEEeccccccCChh---------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 256 -IP-PADAVLIKCVLHNWNDE---------------ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 256 -~~-~~D~i~~~~vlh~~~~~---------------~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.. .||+|++.-.++..... .-..+++++.+.|+| ||++.++-+
T Consensus 249 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 249 EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 33 69999998666543211 124789999999999 899988764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-06 Score=80.84 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=82.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH--------------------------------------IECTV 229 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 229 (365)
..++.... +.+...|+|.+||+|.++++.+....+ .++++
T Consensus 184 aall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 184 AAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 33444444 567789999999999999998876443 56999
Q ss_pred eec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecccccc-C-ChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 230 FDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN-W-NDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 230 ~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~-~-~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+|. +.+++.++. .++++++.+|+.+ +.+ .||+|++.--.+. + ..++...+.+.+.+.|++ -+|++++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 340 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQF 340 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEE
Confidence 999 888888875 4579999999988 333 5999999744432 2 235667788888888875 3488888
Q ss_pred EEee
Q 017835 298 IIDI 301 (365)
Q Consensus 298 i~e~ 301 (365)
|+..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.8e-07 Score=79.15 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=66.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CCCC-c-eE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AIPP-A-DA 261 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~~~-~-D~ 261 (365)
..+++.++ ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 44555555 567789999999999999999987 4579999999 888888775 3579999999988 5543 1 45
Q ss_pred EEeccccccCChhHHHHHH
Q 017835 262 VLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 262 i~~~~vlh~~~~~~~~~~L 280 (365)
+++.+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666666555433333
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=82.51 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=81.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH--------------------------------------IECTV 229 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 229 (365)
..++.... ..+..+|||.+||+|.+++.++....+ .++++
T Consensus 185 a~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 185 AGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 33444444 467789999999999999998876322 57999
Q ss_pred eec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEecccccc-CC-hhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 230 FDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHN-WN-DEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 230 ~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~-~~-~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+|+ +.+++.++. .++|++..+|+.+ +.+ .||+|++.--... +. .++..++.+++.+.|++ -+|+.++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEE
Confidence 999 889998875 3479999999988 334 5999999655432 22 34556777888777775 2378888
Q ss_pred EEee
Q 017835 298 IIDI 301 (365)
Q Consensus 298 i~e~ 301 (365)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=6.3e-07 Score=81.00 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=62.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-C--C--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-A--I-- 256 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~-- 256 (365)
..+++.+. ..++.+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+ + .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 44555555 56778999999999999999999998889999999 889988875 2689999999876 2 1
Q ss_pred ---CCceEEEecc
Q 017835 257 ---PPADAVLIKC 266 (365)
Q Consensus 257 ---~~~D~i~~~~ 266 (365)
..||.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 3599998743
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.36 E-value=8.4e-06 Score=74.71 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=106.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------------------------CCCeEEEeCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------------------------NGNLKYVGGN 251 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~i~~~~~d 251 (365)
.+...||.+|||.......|...+++++++-+|.|.+++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4678999999999999999999888999999999988776442 2689999999
Q ss_pred CCC-CC----------C-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhh
Q 017835 252 MFE-AI----------P-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFM 319 (365)
Q Consensus 252 ~~~-~~----------~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~ 319 (365)
+.+ +. + ...++++-.+|++++.+++.++|+.+.+.+ | +|.++++|.+.+..... ++... ...
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~-~fg~~-m~~ 249 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPND-RFGAI-MQS 249 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTC-CHHHH-HHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcc-hHHHH-HHH
Confidence 987 21 1 268889999999999999999999999988 5 68888999988733221 12110 001
Q ss_pred hhhh-hhc---cCccccCHHHHHHHHHhcCCc
Q 017835 320 DMLM-MVL---VKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 320 d~~~-~~~---~~~~~~t~~e~~~ll~~aGf~ 347 (365)
.+.. ... ......+.++..+.|.++||+
T Consensus 250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1111 101 112335889999999999997
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.9e-07 Score=82.32 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=62.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CCCC-c-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH--IECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AIPP-A- 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~~~-~- 259 (365)
..+++.+. ..++.+|||||||+|.++..|++..+. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. +
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 34555555 567889999999999999999998653 45999999 888888875 3689999999988 5443 2
Q ss_pred -----eEEEeccccccCChh
Q 017835 260 -----DAVLIKCVLHNWNDE 274 (365)
Q Consensus 260 -----D~i~~~~vlh~~~~~ 274 (365)
.+.++.+.-++.+.+
T Consensus 110 ~~~~~~~~vv~NlPY~iss~ 129 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPYNISSP 129 (279)
T ss_dssp SSSSCCEEEEEECCHHHHHH
T ss_pred cccCCceEEEEccCccccHH
Confidence 244555555544444
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=88.60 Aligned_cols=98 Identities=9% Similarity=0.123 Sum_probs=74.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------C-CCeEEEeCCCCCC---C-CCceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------N-GNLKYVGGNMFEA---I-PPADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~-~~~D~i~~~ 265 (365)
.++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++ . ++++++.+|+++. . ..||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 356899999999999999988753 346999999 888888875 2 4899999999872 2 359999985
Q ss_pred cccc--------cCC-hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 266 CVLH--------NWN-DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 266 ~vlh--------~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
-... .+. .....++++++.+.|+| ||.|++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 3221 111 13447889999999999 78877544
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.33 E-value=7.5e-07 Score=78.62 Aligned_cols=87 Identities=15% Similarity=0.262 Sum_probs=63.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC----
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP---- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~---- 257 (365)
..+++.+. ..++.+|||||||+|.++..|++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 44555555 5678899999999999999999874 68999999 888888875 3789999999998 443
Q ss_pred --CceEEEeccccccCChhHHHHHH
Q 017835 258 --PADAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 258 --~~D~i~~~~vlh~~~~~~~~~~L 280 (365)
.+| ++.+.-++++.+-..++|
T Consensus 95 ~~~~~--vv~NlPY~is~~il~~ll 117 (255)
T 3tqs_A 95 DKPLR--VVGNLPYNISTPLLFHLF 117 (255)
T ss_dssp SSCEE--EEEECCHHHHHHHHHHHH
T ss_pred CCCeE--EEecCCcccCHHHHHHHH
Confidence 255 444544444444333333
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.6e-06 Score=84.03 Aligned_cols=128 Identities=14% Similarity=0.182 Sum_probs=84.6
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcccc--ccCCCeEEEecCCccHHHHHHHH---H-CCCCeEEEeech
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDV--FEGLNTLVDVGGGTGTLASAIAK---K-FPHIECTVFDQP 233 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~iLDiG~G~G~~~~~l~~---~-~p~~~~~~~D~~ 233 (365)
..|+.+.+++-.-..|.+++... +.+..... ......|||||||+|-+....++ + .-.+++.+++..
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 46888888887777777765432 22222110 22346899999999988444333 3 223478899985
Q ss_pred HHHHhccc-------CCCeEEEeCCCCC-CCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 234 HVVADLKS-------NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 234 ~~~~~a~~-------~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
++...+.+ .++|+++.+|+.+ ..| .+|+|++-..=+..-.+-..++|....+.||| ||.++
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGimi 464 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEEc
Confidence 56555553 6899999999998 677 49999885433333333334677777889999 77654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=7e-06 Score=76.28 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCeEEEecCCccHHHHHHHHH-----------------CCCCeEEEeech-----------HH-HHhccc----CCCeEE
Q 017835 201 LNTLVDVGGGTGTLASAIAKK-----------------FPHIECTVFDQP-----------HV-VADLKS----NGNLKY 247 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-~~~a~~----~~~i~~ 247 (365)
..+|+|+||++|..+..+... .|.++++.-|+| +. .+.+++ ..+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 579999999999999887766 477888888986 11 111111 112233
Q ss_pred ---EeCCCCC-CCC--CceEEEeccccccCChhH-------------------------HH------------HHHHHHH
Q 017835 248 ---VGGNMFE-AIP--PADAVLIKCVLHNWNDEE-------------------------CV------------KILKNCK 284 (365)
Q Consensus 248 ---~~~d~~~-~~~--~~D~i~~~~vlh~~~~~~-------------------------~~------------~~L~~i~ 284 (365)
+++.|.. -+| ++|+|+++.+||-+++.. +. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665 355 499999999998544321 21 2377889
Q ss_pred HhcccCCCCcEEEEEeeecCCC--ccCccchhhhhhhhhhhhhc--------cC--ccccCHHHHHHHHHhcC-CccceE
Q 017835 285 KAIAINGKAGKVIIIDIKMESE--KADYKTTETQLFMDMLMMVL--------VK--GEERNEKEWAKLFFEAG-FSDYKI 351 (365)
Q Consensus 285 ~~L~p~~~gG~lli~e~~~~~~--~~~~~~~~~~~~~d~~~~~~--------~~--~~~~t~~e~~~ll~~aG-f~~~~~ 351 (365)
+.|+| ||++++.-...++. .....-.....+.++..... ++ --.++.+|++++++++| |++.++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 88888776655443 11100001112222211111 11 12359999999999985 777765
Q ss_pred EE
Q 017835 352 TD 353 (365)
Q Consensus 352 ~~ 353 (365)
..
T Consensus 290 e~ 291 (384)
T 2efj_A 290 ET 291 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=76.05 Aligned_cols=98 Identities=14% Similarity=0.249 Sum_probs=75.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCCC----CCceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEAI----PPADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~----~~~D~i 262 (365)
.+.++||=||+|.|..+.++++..+..+++.+|+ +.+++.+++ .+|++++.+|..+-. ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999999877789999999 888887764 579999999998832 259999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++-..=- .... -..++++.++++|+| ||.++...
T Consensus 162 i~D~~dp-~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDP-IGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EESCCCC-CCTTCCSSCCHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEeCCCc-CCCchhhcCHHHHHHHHHHhCC---CCEEEEec
Confidence 8743211 1110 125789999999999 77777643
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5.6e-06 Score=78.54 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=67.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC-CceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP-PADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh 269 (365)
..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .. ++++.+|+.+..+ .||+|++.-.-.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 356789999999999999999986 468999999 888888875 23 9999999988544 699999854321
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
... ..+++.+. .|+| +|.+++.
T Consensus 365 g~~----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 365 GLH----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp CSC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred chH----HHHHHHHH-hcCC---CcEEEEE
Confidence 111 23455554 4898 7777664
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-07 Score=78.50 Aligned_cols=89 Identities=11% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC---
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP--- 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~--- 258 (365)
..+++.+. ..++.+|||||||+|.++. +. ..+..+++++|+ +.+++.+++ ..+++++.+|+.+ +++.
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 44555555 5677899999999999999 64 444444999999 889988875 2489999999987 4432
Q ss_pred ---ceEEEeccccccCChhHHHHHH
Q 017835 259 ---ADAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 259 ---~D~i~~~~vlh~~~~~~~~~~L 280 (365)
.+.+++++.-++.+.+...+++
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2355666666666655444444
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=67.25 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=61.7
Q ss_pred ccCCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC----CceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGTG-TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP----PADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~----~~D~i~~~~vlh~~ 271 (365)
..+..+|||||||+| ..+..|++. .++.++++|+ |..++ ++..|++++.. +||+|+..+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir----- 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR----- 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence 345679999999999 688888874 3788999997 55444 88999999754 699998866
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
++++...-+.++++.. |.-++|.-.
T Consensus 98 PP~El~~~i~~lA~~v-----~adliI~pL 122 (153)
T 2k4m_A 98 PPAEIHSSLMRVADAV-----GARLIIKPL 122 (153)
T ss_dssp CCTTTHHHHHHHHHHH-----TCEEEEECB
T ss_pred CCHHHHHHHHHHHHHc-----CCCEEEEcC
Confidence 4555566666777666 456666543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.8e-06 Score=73.64 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=66.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHHhccc----CCCeEEEeCCCCC-CCC--Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQP-HVVADLKS----NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D 260 (365)
++.+... +++..+|||+|||+|.++..++...+-.+++++|+. ........ ..++.....++.. .++ .+|
T Consensus 65 ei~ek~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 65 WFHERGY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHTTS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHhCC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 3444433 677889999999999999988877555566667662 22111111 1134444554422 333 599
Q ss_pred EEEeccccc---cCChh-HHHHHHHHHHHhcccCCCC-cEEEE
Q 017835 261 AVLIKCVLH---NWNDE-ECVKILKNCKKAIAINGKA-GKVII 298 (365)
Q Consensus 261 ~i~~~~vlh---~~~~~-~~~~~L~~i~~~L~p~~~g-G~lli 298 (365)
+|++....+ ++-|. ....+|+.+.++|+| | |.+++
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~ 182 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV 182 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE
Confidence 999976554 22232 334578999999999 8 87777
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.2e-06 Score=74.58 Aligned_cols=128 Identities=17% Similarity=0.158 Sum_probs=80.8
Q ss_pred CCCeEEEecCCccHHHHHHHHH-------CCC-----CeEEEeec-h---HHHHh-----------ccc-----------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK-------FPH-----IECTVFDQ-P---HVVAD-----------LKS----------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~-----------a~~----------- 241 (365)
+..+|||||+|+|..+..+++. .|+ ++++++|. | +.+.. ++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999998887664 674 58899986 4 22221 111
Q ss_pred ---------CCCeEEEeCCCCC--C-CC-----CceEEEecc-ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 242 ---------NGNLKYVGGNMFE--A-IP-----PADAVLIKC-VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 242 ---------~~~i~~~~~d~~~--~-~~-----~~D~i~~~~-vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
..+++++.+|+.+ + .+ .||+|++-. .-...++--..++|+.+++.|+| ||+|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tysa-- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFTS-- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESCC--
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEeC--
Confidence 1357788999866 2 22 599998842 11111111125789999999999 787764210
Q ss_pred CCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEE
Q 017835 304 ESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIE 362 (365)
Q Consensus 304 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~ 362 (365)
...+++.|.++||++.++...+.-.-++.
T Consensus 215 ------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~ 243 (257)
T 2qy6_A 215 ------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLC 243 (257)
T ss_dssp ------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEE
T ss_pred ------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEE
Confidence 01356778889999765544333333433
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.4e-06 Score=82.43 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=83.1
Q ss_pred ChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHH----C---------CCCe
Q 017835 160 NFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK----F---------PHIE 226 (365)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~----~---------p~~~ 226 (365)
..|+.+.+++-+-..|.+++.... ...+.. ..+...|||||||+|-++...+++ . ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al-------~d~~~~-~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGAL-------KDLGAD-GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH-------HHHHTT-CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHHH-------HHhhcc-cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 457888888877777777665421 111110 123568999999999996433222 1 2358
Q ss_pred EEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC------C-CceEEEeccccccCChhHHHHHHHHHHHhcccCC
Q 017835 227 CTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI------P-PADAVLIKCVLHNWNDEECVKILKNCKKAIAING 291 (365)
Q Consensus 227 ~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~------~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~ 291 (365)
++++|. +..+...+. .++|+++.+|+.+ .. + .+|+|++-..=+....+...+.|..+.+.|+|
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp-- 526 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP-- 526 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT--
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC--
Confidence 999998 433332221 6789999999988 44 4 59999987654333444445678888899999
Q ss_pred CCcEEE
Q 017835 292 KAGKVI 297 (365)
Q Consensus 292 ~gG~ll 297 (365)
||.++
T Consensus 527 -~Gi~i 531 (745)
T 3ua3_A 527 -TTISI 531 (745)
T ss_dssp -TCEEE
T ss_pred -CcEEE
Confidence 77654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.1e-06 Score=72.95 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=55.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-h-------HHHHhccc-------CCCeEEEeCCCCC--C-C---
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-P-------HVVADLKS-------NGNLKYVGGNMFE--A-I--- 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~~i~~~~~d~~~--~-~--- 256 (365)
..++.+|||+|||+|..+..++.. +.+++++|+ + .+++.+++ .++++++.+|+.+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445679999999999999999986 579999999 7 67776653 3579999999876 2 3
Q ss_pred -CCceEEEecccccc
Q 017835 257 -PPADAVLIKCVLHN 270 (365)
Q Consensus 257 -~~~D~i~~~~vlh~ 270 (365)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 35999999765544
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-05 Score=72.76 Aligned_cols=151 Identities=14% Similarity=0.120 Sum_probs=91.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----------------CCCCeEEEeechH-HHHhc-cc-C-----CC---eEEEeCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK----------------FPHIECTVFDQPH-VVADL-KS-N-----GN---LKYVGGN 251 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~~~a-~~-~-----~~---i~~~~~d 251 (365)
....+|+|+||++|..+..+... .|..+++.-|+|. ....+ +. . .+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999877654433 4677888889843 22221 11 1 12 2335677
Q ss_pred CCC-CCC--CceEEEeccccccCChh-------------------------------HHHHHHHHHHHhcccCCCCcEEE
Q 017835 252 MFE-AIP--PADAVLIKCVLHNWNDE-------------------------------ECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 252 ~~~-~~~--~~D~i~~~~vlh~~~~~-------------------------------~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
|.. -+| ++|+++++.+||-+++. +...+|+..++.|+| ||+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 776 456 59999999999854431 223569999999999 99998
Q ss_pred EEeeecCCCccCc-----cch-hhhhhhhhhhhhc--------cCc--cccCHHHHHHHHHhcCC-ccceEE
Q 017835 298 IIDIKMESEKADY-----KTT-ETQLFMDMLMMVL--------VKG--EERNEKEWAKLFFEAGF-SDYKIT 352 (365)
Q Consensus 298 i~e~~~~~~~~~~-----~~~-~~~~~~d~~~~~~--------~~~--~~~t~~e~~~ll~~aGf-~~~~~~ 352 (365)
+.-...++..... .+. ....+.++..... ++- -.++.+|++.+++++|+ ++.+..
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 8766654432100 010 1112222211111 111 23488999999999965 665543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-06 Score=78.75 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C--------------
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I-------------- 256 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~-------------- 256 (365)
+.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..+++++.+|+.+- .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 478999999999999998875 358999999 888888774 35899999998761 1
Q ss_pred --CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 --PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 --~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..||+|++.--- ..+.+++.+.|+| +|+++.+..
T Consensus 292 ~~~~fD~Vv~dPPr--------~g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDPPR--------SGLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECCCT--------TCCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECcCc--------cccHHHHHHHHhC---CCEEEEEEC
Confidence 158999873211 1233455666677 788887764
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-05 Score=69.79 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=55.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C---CCceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I---PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~---~~~D~i~ 263 (365)
..++.+|||+|||+|..+..++... +..+++++|+ +..++.+++ ..+++++.+|+.+. . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5678899999999999999999874 5679999999 777777664 35899999998762 1 2589999
Q ss_pred e
Q 017835 264 I 264 (365)
Q Consensus 264 ~ 264 (365)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=74.89 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=71.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----C-----------------CCeEEEeCCCCCC--
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----N-----------------GNLKYVGGNMFEA-- 255 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----------------~~i~~~~~d~~~~-- 255 (365)
++.+|||+|||+|..++.++.+.+..+++++|+ +..++.+++ . .+++++.+|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 467999999999999999999988889999999 877777663 2 2388999998762
Q ss_pred -CC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 256 -IP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 256 -~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.+ .||+|++.- . .. ...++..+.+.|+| ||.|++..
T Consensus 127 ~~~~~fD~I~lDP-~---~~--~~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GS--PMEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CC--HHHHHHHHHHhcCC---CCEEEEEe
Confidence 23 599999632 1 11 15788999999999 78666654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-05 Score=77.82 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=74.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHHhccc------CCC-----eEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP------------------HIECTVFDQ-PHVVADLKS------NGN-----LKY 247 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~~-----i~~ 247 (365)
..++.+|+|.+||+|.++..+.+... ..+++|+|+ +.++..++. ... +.+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 34567999999999999988876531 247999999 888777763 222 788
Q ss_pred EeCCCCC-C---CCCceEEEeccccccCCh------------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 248 VGGNMFE-A---IPPADAVLIKCVLHNWND------------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 248 ~~~d~~~-~---~~~~D~i~~~~vlh~~~~------------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..+|.+. + ...||+|+++-.+..... ..-..++.++.+.|+| ||++.++-+
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p 313 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 313 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence 9999987 2 236999999755433211 1124789999999999 899888754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.7e-05 Score=78.51 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC------------------------------------------CCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF------------------------------------------PHI 225 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~------------------------------------------p~~ 225 (365)
..++.... ..+...|||.+||+|.++++.+... +..
T Consensus 180 a~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 180 AAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 33444444 4677899999999999999887642 336
Q ss_pred eEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC----CceEEEecccccc-C-ChhHHHHHHHHHHHhcc--
Q 017835 226 ECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP----PADAVLIKCVLHN-W-NDEECVKILKNCKKAIA-- 288 (365)
Q Consensus 226 ~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~----~~D~i~~~~vlh~-~-~~~~~~~~L~~i~~~L~-- 288 (365)
+++++|+ +.+++.|+. .++|++..+|+.+ ..| .+|+|+++--... + ..+....+.+.+.+.|+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 889988875 3469999999987 222 5999999744321 2 23344556665555544
Q ss_pred -cCCCCcEEEEEee
Q 017835 289 -INGKAGKVIIIDI 301 (365)
Q Consensus 289 -p~~~gG~lli~e~ 301 (365)
| ||+++|+..
T Consensus 338 ~~---g~~~~ilt~ 348 (703)
T 3v97_A 338 FG---GWNLSLFSA 348 (703)
T ss_dssp CT---TCEEEEEES
T ss_pred CC---CCeEEEEeC
Confidence 6 899998854
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.3e-06 Score=72.37 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=67.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCC-eEEEeC-CCCC-CCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGN-LKYVGG-NMFE-AIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-i~~~~~-d~~~-~~~~~ 259 (365)
.++.+++. +.+..+|||+|||+|.++..++...+-..++++|+ ......+.. ..+ +.+... |+.. +...+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 44556664 77888999999999999999887766667888887 222222111 112 223322 4332 22359
Q ss_pred eEEEeccccc----cCChhHHHHHHHHHHHhcccCCCC--cEEEE
Q 017835 260 DAVLIKCVLH----NWNDEECVKILKNCKKAIAINGKA--GKVII 298 (365)
Q Consensus 260 D~i~~~~vlh----~~~~~~~~~~L~~i~~~L~p~~~g--G~lli 298 (365)
|+|++--..+ ..+......+|+-+.++|+| | |.+++
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI 199 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence 9999976554 11222334578888899999 6 76665
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00036 Score=63.71 Aligned_cols=146 Identities=12% Similarity=0.179 Sum_probs=105.0
Q ss_pred CCCeEEEecCCccHHHHHHHHH-CCCCeEEEeechHHHHhcc-----------------------------cCCCeEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQPHVVADLK-----------------------------SNGNLKYVG 249 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~i~~~~ 249 (365)
+...||-+|||.=.....|... .+++++.-+|.|++++.-+ ...+.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5689999999999999888875 3678999999998877422 146889999
Q ss_pred CCCCCC-----------CC-C-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhh
Q 017835 250 GNMFEA-----------IP-P-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQ 316 (365)
Q Consensus 250 ~d~~~~-----------~~-~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~ 316 (365)
.|+.+. +. + .-++++-.+|.+++.+++.++|+.+.+...+ |.+++.|.+.++.. +...
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~----fg~~- 240 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDR----FGQI- 240 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSH----HHHH-
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCH----HHHH-
Confidence 999871 12 2 5678888999999999999999999998865 88888999865432 1100
Q ss_pred hhhhhhhhhc-cC--ccccCHHHHHHHHHhcCCccceEEEc
Q 017835 317 LFMDMLMMVL-VK--GEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 317 ~~~d~~~~~~-~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
..-.+..... .. ....+.++..+.|.++||+.+++..+
T Consensus 241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 0001111111 01 12347889999999999998776655
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=7e-05 Score=68.75 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=57.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCCC---CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIP---PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~---~~D~i~~~~vl 268 (365)
++++.++||+||++|+++..++++ +.+++++|..++-.......+|+++.+|.+...+ ++|+|++-.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 578999999999999999999987 6799999985555555557899999999998322 59999986655
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=75.70 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=71.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhccc-------CCC-eEEEeCCCCC--C--CC-CceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKS-------NGN-LKYVGGNMFE--A--IP-PADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~~-i~~~~~d~~~--~--~~-~~D~i~ 263 (365)
.++.+|||++||+|.+++.++.+.++ .+++++|. +..++.+++ .++ ++++.+|.++ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 45689999999999999999998665 57999999 888887774 234 9999999865 2 23 599999
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+.- . ... ..++..+.+.|+| ||.|++..
T Consensus 131 lDP--~--g~~--~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 131 LDP--F--GTP--VPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp ECC--S--SCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECC--C--cCH--HHHHHHHHHHhCC---CCEEEEEe
Confidence 854 1 111 3588899999999 77666554
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.77 E-value=2.7e-05 Score=68.56 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=53.8
Q ss_pred ccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH-------HHhccc--------CCCeEEEeCCCCC---CC
Q 017835 198 FEGL--NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHV-------VADLKS--------NGNLKYVGGNMFE---AI 256 (365)
Q Consensus 198 ~~~~--~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~--------~~~i~~~~~d~~~---~~ 256 (365)
.+++ .+|||+|||+|..+..++.. +.+++++|. +.+ ++.++. ..+++++.+|..+ ..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4555 89999999999999999998 568999999 644 333321 1579999999876 23
Q ss_pred C-CceEEEecccccc
Q 017835 257 P-PADAVLIKCVLHN 270 (365)
Q Consensus 257 ~-~~D~i~~~~vlh~ 270 (365)
+ .||+|++.-..++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 5999999766654
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=66.99 Aligned_cols=97 Identities=18% Similarity=0.089 Sum_probs=71.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------------CCCeEEEeCCCCCC-------C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------------NGNLKYVGGNMFEA-------I 256 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~~-------~ 256 (365)
.++++||=||+|.|..+.++++. |..+++.+|+ +.+++.+++ .+|++++.+|...- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 45689999999999999999985 4578999999 888888764 25689999998751 1
Q ss_pred CCceEEEeccccccC-------C-hhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 257 PPADAVLIKCVLHNW-------N-DEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 257 ~~~D~i~~~~vlh~~-------~-~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
..||+|++-..-... . ..-..++++.++++|+| ||.++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 259999875321110 1 11235788999999999 7766553
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0004 Score=62.82 Aligned_cols=144 Identities=15% Similarity=0.079 Sum_probs=96.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCCC----------C-C
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEAI----------P-P 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~-~ 258 (365)
.+...||++|||-=.....+.. .++++++-+|.|.+++..++ ..+..++..|+.+.+ + .
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 3456899999998888666652 12589999999988886542 567889999998621 1 2
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhh-h-hhhhh-----c-cCcc
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFM-D-MLMMV-----L-VKGE 330 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-d-~~~~~-----~-~~~~ 330 (365)
.-++++-.++|++++++...+|+.+.+.+.| |..+++|...++.... ........ . +.... . ....
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~ 253 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELI 253 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHH--HHHHHHHHHHHHC-----------CCT
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccc
Confidence 5577888999999999999999999999888 5566777765543110 00000001 1 10010 0 1111
Q ss_pred cc-C-HHHHHHHHHhcCCccc
Q 017835 331 ER-N-EKEWAKLFFEAGFSDY 349 (365)
Q Consensus 331 ~~-t-~~e~~~ll~~aGf~~~ 349 (365)
.+ + .++..++|.+.||+.+
T Consensus 254 ~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 254 YHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCTTCCCHHHHHTTTTEEEE
T ss_pred cCCCChHHHHHHHHHCcCccc
Confidence 22 5 7889999999999877
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00028 Score=70.86 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=69.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC---CCeEEEeec-hHHHHhc--cc----------CCCeEEEeCCCCCC----CCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFP---HIECTVFDQ-PHVVADL--KS----------NGNLKYVGGNMFEA----IPP 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~----------~~~i~~~~~d~~~~----~~~ 258 (365)
.++.+|+|.|||+|.++..+++..+ ..+++|+|+ +.+++.+ +. .....+...|+..+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3578999999999999999998875 357999999 7777766 21 12235666777662 235
Q ss_pred ceEEEecccccc-CCh-hH-------------------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 259 ADAVLIKCVLHN-WND-EE-------------------------CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 259 ~D~i~~~~vlh~-~~~-~~-------------------------~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
||+|+++--... +.. .. ...++.++.+.|+| ||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 999999644311 111 11 23467888999999 899888654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00015 Score=64.06 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=65.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHHhcc---c-C-CCeEEEeC-CCCC-CCCCce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQP-HVVADLK---S-N-GNLKYVGG-NMFE-AIPPAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~---~-~-~~i~~~~~-d~~~-~~~~~D 260 (365)
++.+. . .+.++.+|||+||++|.++..+++..+-..++++|+. ....... . . +-+.+..+ |+.. +...+|
T Consensus 72 ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D 149 (300)
T 3eld_A 72 WLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD 149 (300)
T ss_dssp HHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence 34444 2 3678899999999999999999987655577888872 2111111 0 1 22333333 4443 223599
Q ss_pred EEEeccccc----cCChhHHHHHHHHHHHhcccCCCC-cEEEEE
Q 017835 261 AVLIKCVLH----NWNDEECVKILKNCKKAIAINGKA-GKVIII 299 (365)
Q Consensus 261 ~i~~~~vlh----~~~~~~~~~~L~~i~~~L~p~~~g-G~lli~ 299 (365)
+|++.-..+ ..+......+|.-+.++|+| | |.+++=
T Consensus 150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K 190 (300)
T 3eld_A 150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHV---NTENFCVK 190 (300)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence 999965544 11112235668888899999 8 877663
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00022 Score=62.85 Aligned_cols=75 Identities=23% Similarity=0.207 Sum_probs=59.9
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-C-------
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-A------- 255 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~------- 255 (365)
.+++++.+. .+++..+||.+||.|..+..|+++ +.+++++|. |.+++.+++ .+|++++.+|+.+ +
T Consensus 11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence 456666666 677889999999999999999998 779999999 888877654 2589999999876 1
Q ss_pred CCCceEEEec
Q 017835 256 IPPADAVLIK 265 (365)
Q Consensus 256 ~~~~D~i~~~ 265 (365)
...+|.|++.
T Consensus 87 ~~~vDgIL~D 96 (285)
T 1wg8_A 87 VERVDGILAD 96 (285)
T ss_dssp CSCEEEEEEE
T ss_pred CCCcCEEEeC
Confidence 1347888763
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.55 E-value=6e-05 Score=70.67 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=53.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----C----CCeEEEeCCCCCC--C---CCceEEEe
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----N----GNLKYVGGNMFEA--I---PPADAVLI 264 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~i~~~~~d~~~~--~---~~~D~i~~ 264 (365)
.++.+|||+|||+|..+..+++. ..+++++|. +.+++.++. . .+++++.+|+.+. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34789999999999999998887 569999999 888888764 2 4799999999873 2 26999998
Q ss_pred c
Q 017835 265 K 265 (365)
Q Consensus 265 ~ 265 (365)
.
T Consensus 170 D 170 (410)
T 3ll7_A 170 D 170 (410)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00045 Score=58.20 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=62.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCCC------------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFEA------------ 255 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~------------ 255 (365)
+.+.++||||||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 4567899999985 45555565 45789999998 776666653 34799999995431
Q ss_pred ------------C---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 256 ------------I---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 256 ------------~---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
. ..||+|++-.- .....+..+.+.|+| ||.| ++|.+.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~---GG~I-v~DNv~ 156 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITR---PVTL-LFDDYS 156 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSS---CEEE-EETTGG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCC---CeEE-EEeCCc
Confidence 1 34999998542 113455667788999 6655 666543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00012 Score=71.62 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=69.0
Q ss_pred CeEEEecCCccHHHHHHHHHCC---------------CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-C-C
Q 017835 202 NTLVDVGGGTGTLASAIAKKFP---------------HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-A-I 256 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~ 256 (365)
.+|+|.+||+|.++..+.+..+ ..++.|+|+ +.++..++. ..++.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999988765432 468999999 777777763 2345558889876 3 2
Q ss_pred C--CceEEEeccccc--cCChh-------------------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 257 P--PADAVLIKCVLH--NWNDE-------------------------ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 257 ~--~~D~i~~~~vlh--~~~~~-------------------------~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+ .||+|+++--.. .|..+ .-..++.++.+.|+| ||++.++-+
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP 396 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA 396 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence 2 599999964332 22211 113588999999999 899887753
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00033 Score=59.64 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=69.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc--c---CCCeEEEeC-CCCC-CCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK--S---NGNLKYVGG-NMFE-AIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~---~~~i~~~~~-d~~~-~~~~~ 259 (365)
.++.+.+. +++..+|||+||++|.++...+....-.++.++|+ +.-.+.-. + -+.|+|..+ |++. +...+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45566664 77888999999999999998888765558999998 32222111 1 478999999 9765 33459
Q ss_pred eEEEeccccccCC---hh-HHHHHHHHHHHhcccCCCCcEEEE
Q 017835 260 DAVLIKCVLHNWN---DE-ECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 260 D~i~~~~vlh~~~---~~-~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
|+++|--.=..=+ +. ...++|.-+.+.|++ |.+.|
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~----~~fc~ 184 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN----NQFCI 184 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc----CCEEE
Confidence 9999853221111 11 223466666788887 45554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00064 Score=66.30 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=72.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHHhccc------C--CCeEEEeCCCCCC-CC-----CceE
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKF---PHIECTVFDQ-PHVVADLKS------N--GNLKYVGGNMFEA-IP-----PADA 261 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~------~--~~i~~~~~d~~~~-~~-----~~D~ 261 (365)
++.+|+|.+||+|.++..+.+.. +..++.|+|+ +.+...++. . .++.+..+|.+.. +| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998875 3578999999 777777763 1 4678999999873 22 4999
Q ss_pred EEecccc-ccCChh--------------------HHHHHHHHHHHhcc-cCCCCcEEEEEee
Q 017835 262 VLIKCVL-HNWNDE--------------------ECVKILKNCKKAIA-INGKAGKVIIIDI 301 (365)
Q Consensus 262 i~~~~vl-h~~~~~--------------------~~~~~L~~i~~~L~-p~~~gG~lli~e~ 301 (365)
|+++--. ..|... .-..++.++.+.|+ | ||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence 9986222 112100 01347999999999 8 899887654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00034 Score=60.45 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=62.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeechHH--HHhcc-cCCCe---EEEeC-CCCCCCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQPHV--VADLK-SNGNL---KYVGG-NMFEAIP-P 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~~~~--~~~a~-~~~~i---~~~~~-d~~~~~~-~ 258 (365)
.++.+++ .++++.+|||+||+.|.++...++.- ++ .+.+.++..- +.... ....+ .+..+ |+++..+ .
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 4555664 48899999999999999999888752 22 2233333111 11111 01344 55557 9987444 6
Q ss_pred ceEEEeccccc--cCC-hh-HHHHHHHHHHHhcccCCCCc-EEEE
Q 017835 259 ADAVLIKCVLH--NWN-DE-ECVKILKNCKKAIAINGKAG-KVII 298 (365)
Q Consensus 259 ~D~i~~~~vlh--~~~-~~-~~~~~L~~i~~~L~p~~~gG-~lli 298 (365)
+|+|++--.-. +.. |. .....|.-+.+.|+| || .+++
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 99999853321 111 21 122356667789999 77 5555
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=6.9e-05 Score=85.34 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=65.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHHhcccC---CCeEEEeCCCCCC---CC-CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPH-----IECTVFDQ-PHVVADLKSN---GNLKYVGGNMFEA---IP-PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~~---~~-~~D~i~~~ 265 (365)
.+..+||+||.|+|..+..+++.... .+++..|. +...+.+++. -.++....|..++ .+ .||+|+++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 34679999999999887777666432 35777777 4455555431 1233222233332 22 49999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
++||--++. .+.|+++++.|+| ||++++.+......-.. ...++.-. ....+...+.++|.++|.++|
T Consensus 1319 ~vl~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~~g~-----~~~~~~~~--~r~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1319 CALATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHPLGE-----MVGFLTSP--EQGGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp CC-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTT
T ss_pred ccccccccH--HHHHHHHHHhcCC---CcEEEEEeccccccccc-----cccccccc--cccCCcccCHHHHHHHHHhCC
Confidence 999854443 6789999999999 99999987543110000 00000000 001123347789999999999
Q ss_pred CccceEEE
Q 017835 346 FSDYKITD 353 (365)
Q Consensus 346 f~~~~~~~ 353 (365)
|+.+....
T Consensus 1387 f~~~~~~~ 1394 (2512)
T 2vz8_A 1387 LHLVALKR 1394 (2512)
T ss_dssp EEEEEEEE
T ss_pred Cceeeecc
Confidence 98776543
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0015 Score=57.58 Aligned_cols=105 Identities=14% Similarity=0.199 Sum_probs=67.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHh---ccc--CCCeEEEeC-CCCC-CCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVAD---LKS--NGNLKYVGG-NMFE-AIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~--~~~i~~~~~-d~~~-~~~~~ 259 (365)
.++.+.+. +.+..+|||+||++|.++...+....-.++.++|+ ..-.+. .++ -.-|.++.+ |+.. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 44555544 67788999999999999997777765557999998 221111 111 234888888 8766 33459
Q ss_pred eEEEeccccccCCh----h-HHHHHHHHHHHhcccCCCC-cEEEE
Q 017835 260 DAVLIKCVLHNWND----E-ECVKILKNCKKAIAINGKA-GKVII 298 (365)
Q Consensus 260 D~i~~~~vlh~~~~----~-~~~~~L~~i~~~L~p~~~g-G~lli 298 (365)
|+|+|--. .--+. . ...++|.-+.+.|++ + |.+.|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence 99988533 11121 1 223466777889988 5 55555
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00021 Score=48.90 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=44.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
+..|++.|...+.++|..+||+.+|+ +...+.+.|..|...|++.... .++|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC------CceEeeC
Confidence 44566777643368999999999999 5789999999999999987754 5788865
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0056 Score=54.35 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=66.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hH--------------------------HHHhccc-----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKF-----PHIECTVFDQ-PH--------------------------VVADLKS----- 241 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~----- 241 (365)
.....|||+|+..|..++.++... ++.+++++|. .. ..+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 446799999999999998887654 4778999884 10 1222222
Q ss_pred ---CCCeEEEeCCCCCC---CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 242 ---NGNLKYVGGNMFEA---IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 242 ---~~~i~~~~~d~~~~---~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.++|+++.||+.+. .+ .+|+|++-.-.+ +.....|..+...|+| |.++|+|.
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p----GGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV----GGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE----EEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC----CEEEEEcC
Confidence 37999999999773 32 489988854221 2346789999999999 55666554
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00053 Score=51.85 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=51.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHc--CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTL--QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
+..|++.|... +++|+.+||+.+ ++ ....+++.|+.|...|+++..+ .+.|++|+.+..+..
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~------rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA------NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS------TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC------CceEEECchHHHHHH
Confidence 44567777643 799999999999 88 5789999999999999999875 569999999974443
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0048 Score=55.73 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=55.7
Q ss_pred chHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC
Q 017835 186 TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE 254 (365)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~ 254 (365)
+..++++.+. .+++..+||..||.|..+..+++.. |+.+++++|. +.+++.++. ..|++++.+++.+
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3466777776 6788999999999999999999984 7889999999 888887753 5788888888765
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=48.49 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=50.9
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+|..-.++.|++.| . ++.|+.+||+.+++ +...+.+.|+.|...|++.... +.|++++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-------CEEEECCCch
Confidence 344444566788888 5 78999999999999 5788999999999999999873 5899988664
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.028 Score=56.59 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=103.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC--------CCeEEEeechHHHHhccc------------------------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFP--------HIECTVFDQPHVVADLKS------------------------------ 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 241 (365)
+...||-+|||-=....+|...+| ++++.-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 468999999999999999988755 778899999888765321
Q ss_pred CCCeEEEeCCCCCC-------------CCC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 242 NGNLKYVGGNMFEA-------------IPP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 242 ~~~i~~~~~d~~~~-------------~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
+++..++..|+.+. .++ .-++++-.+|.+++.+++.++|+.+.+ + | ++.++++|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 14889999999872 122 456777899999999999999999985 4 5 588999998876543
Q ss_pred cCccchhhhhhhhhhhhhc---cCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 308 ADYKTTETQLFMDMLMMVL---VKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 308 ~~~~~~~~~~~~d~~~~~~---~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.+. +.... ...+..... .-....+.++..+.|.+.||+.+....+
T Consensus 262 ~d~-f~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 321 21110 111111100 0112347899999999999987665543
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=46.28 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=47.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcc-hHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ-CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+-.|++.|... +|.|+.+||+.+|+ ... .+++.|..|...|++...+.+ ...|++|+.+.
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~g----RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGTT----PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECSS----SCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCCC----CCCeEeCHhHH
Confidence 44455666654 79999999999999 466 899999999999999976531 34799998775
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0017 Score=57.70 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=46.4
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...+.++|+.|||+++|+ +..-+.|+|+.|+..||+.++. ++.|++++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~------~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA------DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT------TSEEEECTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCcEEehHHH
Confidence 4567777754468999999999999 4688999999999999999985 5789999754
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=47.13 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.+|.--.++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~~ 83 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE---AQTVYYTLKSEE 83 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC---TTCCEEEECCHH
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECHHH
Confidence 34444456677778875 79999999999999 57899999999999999998752 113458877643
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0031 Score=46.74 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=44.9
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |....|++++.
T Consensus 24 ~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~~ 82 (102)
T 3pqk_A 24 VRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN---IKQIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS---SSCCEEEECSS
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECcH
Confidence 34445555544 68999999999999 56889999999999999988652 11345887764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.015 Score=52.01 Aligned_cols=130 Identities=18% Similarity=0.136 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCccHHHHHH----HHHCCCCe--EEEeec-h--------H----HHHhcc------cCCCe--EEEeCC
Q 017835 199 EGLNTLVDVGGGTGTLASAI----AKKFPHIE--CTVFDQ-P--------H----VVADLK------SNGNL--KYVGGN 251 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l----~~~~p~~~--~~~~D~-~--------~----~~~~a~------~~~~i--~~~~~d 251 (365)
.+.-+|+|+|=|+|...... .+..|..+ ++.++. + . ..+... ...++ ++.-||
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 34568999999999865433 23467654 455552 1 1 011000 03444 456788
Q ss_pred CCC---CCC--CceEEEecccc-ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh
Q 017835 252 MFE---AIP--PADAVLIKCVL-HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV 325 (365)
Q Consensus 252 ~~~---~~~--~~D~i~~~~vl-h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (365)
+.+ .++ .+|++++-..- ..-|+--..++|+++++.++| ||++.-..
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC-------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe-------------------------
Confidence 876 233 48999884321 111222235799999999999 77664311
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEcCCceeEEEE
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDVLGVRSLIEV 363 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 363 (365)
....+++.|+++||.+.++...++-.-++.+
T Consensus 227 -------aag~VRR~L~~aGF~V~k~~G~g~KReml~A 257 (308)
T 3vyw_A 227 -------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVA 257 (308)
T ss_dssp -------CCHHHHHHHHHTTCEEEEEECC---CEEEEE
T ss_pred -------CcHHHHHHHHHCCCEEEecCCCCCCCceeEE
Confidence 1235578899999998776555444444444
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.012 Score=51.68 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=61.0
Q ss_pred ccCCCeEEEecC------CccHHHHHHHHHCCC-CeEEEeechHHHHhcccCCCeEEEeCCCCC-C-CCCceEEEecc--
Q 017835 198 FEGLNTLVDVGG------GTGTLASAIAKKFPH-IECTVFDQPHVVADLKSNGNLKYVGGNMFE-A-IPPADAVLIKC-- 266 (365)
Q Consensus 198 ~~~~~~iLDiG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~-~~~~D~i~~~~-- 266 (365)
.+.+.+|||+|+ ..|.. .+.+..|. ..++.+|+.++...+ . .++.||+.+ . ...+|+|++-.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 467899999996 77774 44455776 699999984444321 2 458999866 2 24699998832
Q ss_pred -ccccC------ChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 267 -VLHNW------NDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 267 -vlh~~------~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.--+. ...-+..++.=+.+.|+| ||.+++=
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 11111 122466777778889999 7877763
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.019 Score=42.92 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCcc
Q 017835 20 QAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQE 98 (365)
Q Consensus 20 ~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 98 (365)
...+++++.+.|...+|... .. ++.++.||++.+ ++ ++..+.+.|+.|...|++++.....|+..
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L---------~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~~d~r~ 69 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHL---------TH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPK 69 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHH---------TT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred HHHHHHHHcCccHHHHHHHH---------Hh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 34555666666665555443 32 689999999999 99 67999999999999999998653222212
Q ss_pred ceEecCccchhhh
Q 017835 99 EGYILTSASKLLL 111 (365)
Q Consensus 99 ~~y~~t~~~~~l~ 111 (365)
-.|++|+.++.+.
T Consensus 70 ~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 70 VEYELSEYGRSLE 82 (107)
T ss_dssp EEEEECTTGGGGH
T ss_pred EEEEECccHHHHH
Confidence 3599999886443
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0025 Score=56.06 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=48.6
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+.|++.|...++++|+.|||+++|+ +..-+.|+|+.|+..|++.++.. .+.|++++...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-----~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-----ARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-----SSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEcCHHHH
Confidence 3467777754478999999999999 57899999999999999998751 38899987543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.012 Score=53.87 Aligned_cols=84 Identities=10% Similarity=0.136 Sum_probs=59.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC-C-C----CC-----------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE-A-I----PP----------- 258 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~-~----~~----------- 258 (365)
+...|||||.|.|.++..|++.....++++++. +..+...++ .++++++.+|+++ + + .+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~ 137 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSS 137 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhhHHHhhccccccccccccc
Confidence 358999999999999999998744457888887 555555543 5799999999976 2 1 11
Q ss_pred ----ceEEEeccccccCChhHHHHHHHHH
Q 017835 259 ----ADAVLIKCVLHNWNDEECVKILKNC 283 (365)
Q Consensus 259 ----~D~i~~~~vlh~~~~~~~~~~L~~i 283 (365)
-.+.++.+.-++.+.+-..++|..+
T Consensus 138 ~~~~~~~~vvaNLPYnIstpil~~ll~~~ 166 (353)
T 1i4w_A 138 DHINDKFLTVANVTGEGSEGLIMQWLSCI 166 (353)
T ss_dssp TSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred ccCCCceEEEEECCCchHHHHHHHHHHhc
Confidence 1245666766677666556666654
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.011 Score=46.48 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|...|++++....+|+..-.+.+|+.++.+.
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 3456677777764 69999999999999 578999999999999999986522221112378888877443
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.04 Score=50.64 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=73.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------CCCeEEEeCCCCC--C-CC-Cce
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------NGNLKYVGGNMFE--A-IP-PAD 260 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~--~-~~-~~D 260 (365)
..++.+|||+-+|.|.=+..|+...++..++..|. +.-+..+++ ..++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 57789999999999999999998877767899998 544443331 3578888888766 1 23 599
Q ss_pred EEEeccc--------c-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 261 AVLIKCV--------L-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 261 ~i~~~~v--------l-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.|++--- + ..+...+ -.++|+++.+.||| ||+|+-....+..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCch
Confidence 9987211 1 1122221 24789999999999 8877766555543
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.022 Score=44.29 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCC
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENE 96 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 96 (365)
-+...+++++.+-|...+|... .. ++.+..||++.+ ++ .+..+.+.|+.|...|++++....++.
T Consensus 14 Cpi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 14 SPVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp CHHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CcHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3567788888888888877654 22 799999999999 99 679999999999999999987532211
Q ss_pred ccceEecCccchhhh
Q 017835 97 QEEGYILTSASKLLL 111 (365)
Q Consensus 97 ~~~~y~~t~~~~~l~ 111 (365)
..-.|++|+.++.+.
T Consensus 80 r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 80 PKVEYSLTEFGRTLE 94 (131)
T ss_dssp CEEEEEECTTGGGGH
T ss_pred CeEEEEECHhHHHHH
Confidence 113599999998554
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0028 Score=48.45 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=51.0
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
++|.--.++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |....|++++.+.
T Consensus 13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~---gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ---GRVRTCAIEKEPF 79 (118)
T ss_dssp HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec---CCEEEEEECHHHH
Confidence 44444556667777764 79999999999999 57899999999999999987652 1134588887553
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0029 Score=47.83 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=46.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.++.|+..|.. ++.|+.+||+.+++ +...+.+.|+.|...|++..... +....|++|+.+.
T Consensus 22 ~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~---gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV---GREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec---CCEEEEEechHHH
Confidence 34556666643 78999999999999 57899999999999999997641 1123488887664
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0048 Score=47.47 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+++|.--.++.|+..|... ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |....|++++..
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~---gr~~~y~l~~~~ 103 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE---GKLALYSLGDEH 103 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CCEEEESCHH
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE---CCEEEEEECHHH
Confidence 4444444567788888632 78999999999999 57999999999999999987651 112358887643
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0042 Score=45.54 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=47.8
Q ss_pred HHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 38 CAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 38 ~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.-.++.|+..|.. +++.|..+||+.+|+ +...+.+.|+.|...|++..... +....|++++.+
T Consensus 23 ~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~---~r~~~y~l~~~~ 85 (99)
T 3cuo_A 23 HPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD---AQRILYSIKNEA 85 (99)
T ss_dssp SHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC---SSCEEEEECCHH
T ss_pred ChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec---CCEEEEEEChHH
Confidence 3345566666765 369999999999999 57899999999999999998751 112357877654
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0064 Score=42.85 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=46.1
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
....|++.|.. .+.|+.|||+++|+ ....+++.|..|...|++...... +-.|+++...
T Consensus 18 ~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~~----PP~W~~~~~~ 76 (82)
T 1oyi_A 18 IVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDDI----PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSSS----SCEEESCC--
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCCC----CCcceeccCc
Confidence 34556677775 34999999999999 578999999999999999997632 5678877654
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0069 Score=53.25 Aligned_cols=57 Identities=11% Similarity=0.248 Sum_probs=46.3
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|...|++..+. ++.|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~------~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA------DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCeEEecHHH
Confidence 3456666533368999999999999 5789999999999999999875 3489998754
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0025 Score=47.91 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=51.6
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCC
Q 017835 15 ELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSE 94 (365)
Q Consensus 15 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 94 (365)
+..+....++..+....... |+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++.....
T Consensus 10 ~~~~~~~~~~~al~~~~r~~---------IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-- 73 (108)
T 2kko_A 10 ALLDQVARVGKALANGRRLQ---------ILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARRE-- 73 (108)
T ss_dssp HHHHHHHHHHHHHTTSTTHH---------HHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEE--
T ss_pred hhHHHHHHHHHHhCCHHHHH---------HHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe--
Confidence 34444444554444444444 4444553 68999999999999 57999999999999999987651
Q ss_pred CCccceEecCccc
Q 017835 95 NEQEEGYILTSAS 107 (365)
Q Consensus 95 ~~~~~~y~~t~~~ 107 (365)
|....|++++..
T Consensus 74 -gr~~~y~l~~~~ 85 (108)
T 2kko_A 74 -GTRQYYRIAGED 85 (108)
T ss_dssp -TTEEEEEESCHH
T ss_pred -CCEEEEEEChHH
Confidence 112357777543
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0043 Score=49.71 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.+++|.--.++.|+..|.. ++.|+.+||+.+|+ ....+.+.|+.|...|++..... |....|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~---Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD---GRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec---CCEEEEEEChHHH
Confidence 4566666678888888874 79999999999999 57899999999999999998651 1123588887554
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0055 Score=42.94 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=44.2
Q ss_pred HcCcccccccC--CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 41 QLGIPDIIHNH--AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 41 ~lglf~~L~~~--~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
+..|++.|... +.++|+.|||+++|+ +...+.+.|.-|...|++...+. .++.|..++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~----~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS----SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC----CCCceEecC
Confidence 34455556542 138999999999999 57889999999999999998752 146777664
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0052 Score=53.36 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=47.2
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
.|++.|...++++|+.|||+++|+ +...+.|+|+.|...|++.++.. +++|++++....
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-----~~~Y~lg~~~~~ 68 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-----AGGFRLGPALGQ 68 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-----GCEEEECSHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----CCeEEECHHHHH
Confidence 355566543358999999999999 57899999999999999998751 478999975543
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0046 Score=46.25 Aligned_cols=76 Identities=12% Similarity=0.237 Sum_probs=51.0
Q ss_pred hHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccC
Q 017835 14 DELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTS 93 (365)
Q Consensus 14 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~ 93 (365)
.+.......++..+...... .|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++.....
T Consensus 10 ~~~~~~~~~~~~~l~~~~r~---------~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~~- 74 (106)
T 1r1u_A 10 TDTLERVTEIFKALGDYNRI---------RIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKRQ- 74 (106)
T ss_dssp HHHHHHHHHHHHHTCSHHHH---------HHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-
T ss_pred HHHHHHHHHHHHHhCCHHHH---------HHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-
Confidence 33444444444444444444 44444553 68999999999999 57899999999999999998651
Q ss_pred CCCccceEecCcc
Q 017835 94 ENEQEEGYILTSA 106 (365)
Q Consensus 94 ~~~~~~~y~~t~~ 106 (365)
|....|++++.
T Consensus 75 --gr~~~y~l~~~ 85 (106)
T 1r1u_A 75 --GQSMIYSLDDI 85 (106)
T ss_dssp --TTEEEEEESSH
T ss_pred --CCEEEEEEChH
Confidence 11224776653
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.019 Score=44.79 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=51.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+....|.+|+.+..+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 44466666643 68999999999999 679999999999999999987532222223589999888655
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.014 Score=52.24 Aligned_cols=41 Identities=22% Similarity=0.071 Sum_probs=35.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS 241 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 241 (365)
.++..|||++||+|.++.++++. +.+++++|+ +.+++.+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 56789999999999999998876 569999999 888887764
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.027 Score=45.63 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=50.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 45566677653 68999999999999 678999999999999999986422222123488998887444
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0065 Score=53.01 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=45.9
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.|++.|...++++|+.|||+++|+ +...+.|+|+.|...|++.+.. ++.|++++..
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~------~~~Y~lg~~~ 67 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECTHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC------CCcEEECHHH
Confidence 455566543358999999999999 5789999999999999999873 5889998754
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0094 Score=52.26 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=48.8
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.|++.|...+++.|+.|||+++|+ +...+.|+|+.|...|++.++ ++.|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~-------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS-------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-------CCEEEEcHHHHHHH
Confidence 3456666643468999999999999 578999999999999999986 48999998665444
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0075 Score=42.64 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=43.8
Q ss_pred HcCcccccccC--CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 41 QLGIPDIIHNH--AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 41 ~lglf~~L~~~--~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
+..|++.|... |.++|+.+||+++|+ +...+++.|..|...|++...+. ..+.|...+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~----~~~~W~i~~~~~ 74 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS----SSCEEEEC----
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC----CCCeeEEeCcHH
Confidence 34455555542 137999999999999 56889999999999999998652 157788776554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.082 Score=51.33 Aligned_cols=101 Identities=10% Similarity=0.034 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKF-------------PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AI 256 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~ 256 (365)
...+.+|+|-.||+|.++....+.. ....+.|+|+ +.+...++. .....+..+|.+. +.
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~ 294 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPL 294 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCG
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCch
Confidence 4566799999999999988776532 1346899998 766666652 3344567888775 21
Q ss_pred ------CCceEEEecccccc-CC-------------hhHHHHHHHHHHHhcc-------cCCCCcEEEEEee
Q 017835 257 ------PPADAVLIKCVLHN-WN-------------DEECVKILKNCKKAIA-------INGKAGKVIIIDI 301 (365)
Q Consensus 257 ------~~~D~i~~~~vlh~-~~-------------~~~~~~~L~~i~~~L~-------p~~~gG~lli~e~ 301 (365)
..||+|+++--+.. +. .+.....+..+.+.|+ | ||++.++-+
T Consensus 295 ~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVlP 363 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVVP 363 (530)
T ss_dssp GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEEE
T ss_pred hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEec
Confidence 14999999754421 11 1112346777777776 5 898888754
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0082 Score=42.54 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=40.2
Q ss_pred HcCcccccccCC-CCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHA-KPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~-~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..|++.|...+ ++.|++||++.+ ++ +..-++|.|+.|+..|++.+..
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 445777776543 689999999999 88 5789999999999999999864
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0054 Score=45.00 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=50.8
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
.++..-.++.|+..|... ++.|..+||+.+++ +...+.+.|+.|...|++.......++....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 344444556666666432 68999999999999 578999999999999999964311111124588888775
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0098 Score=52.39 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=46.5
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.|....+++|+.|||+++|+ +...+.|+|+.|...|++.++ ++.|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~-------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD-------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES-------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec-------CCEEEEcHHH
Confidence 3456666643468999999999999 578999999999999999986 4889998754
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.013 Score=45.04 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=44.7
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.++.|+..|.. ++.++.+||+.+|+ ....+.+.|+.|...|++..... |....|++++.
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~~---gr~~~y~l~~~ 105 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRKQ---GRHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESSH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEEChH
Confidence 34556666654 68999999999999 57999999999999999997651 11234777754
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0096 Score=44.97 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 19 SQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 19 ~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
+...+++++.+.|...+|.. |.. ++.+..+||+.+ ++ +...+.+.|+.|...|++++.....|..
T Consensus 11 ~~~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp HHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CHHHHHHHHcCccHHHHHHH---------HHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 34455565556666555543 332 589999999999 99 6799999999999999999865322221
Q ss_pred cceEecCccchhhh
Q 017835 98 EEGYILTSASKLLL 111 (365)
Q Consensus 98 ~~~y~~t~~~~~l~ 111 (365)
.-.|++|+.++.+.
T Consensus 77 ~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 77 RVEYTLTPEGYALY 90 (112)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECHhHHHHH
Confidence 23599999887443
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.033 Score=41.54 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCceeccccCCCC
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFFALQKTSENE 96 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 96 (365)
.+...+++++.+.|...+|... .. ++.++.||++.++ + ++..+.+.|+.|...|++++.....|.
T Consensus 13 c~~~~~l~~l~~~~~~~IL~~L---------~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIFQI---------NR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHHHH---------TT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CCHHHHHHHHcCccHHHHHHHH---------Hh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 3456667777777776666533 22 6899999999994 9 679999999999999999986532221
Q ss_pred ccceEecCccchhhh
Q 017835 97 QEEGYILTSASKLLL 111 (365)
Q Consensus 97 ~~~~y~~t~~~~~l~ 111 (365)
..-.|.+|+.++.+.
T Consensus 79 r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 79 PRVEYSLTPLGEKVL 93 (107)
T ss_dssp CEEEEEECHHHHTTH
T ss_pred CeeEEEECccHHHHH
Confidence 113599999886433
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.026 Score=43.70 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
++.|.++||+.+++ ++..++++|+.|...|+++.... ..+.|.++...
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g----~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG----AYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCG
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC----CCCceEeCCCH
Confidence 68999999999999 57999999999999999987641 13678887643
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.025 Score=45.10 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
...+|++.+.+... . +++.|+++||+.+++ ++..++++|..|...|+++... | .|.|.+++...
T Consensus 13 ~~yAl~~L~~La~~---~--~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r----G-~GGy~L~~~p~ 76 (149)
T 1ylf_A 13 FSIAVHILSILKNN---P--SSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR----G-PGGAGLLKDLH 76 (149)
T ss_dssp HHHHHHHHHHHHHS---C--GGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCGG
T ss_pred HHHHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc----C-CCceEeCCChh
Confidence 34567777666542 2 268999999999999 5799999999999999998765 2 57888876543
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.019 Score=42.00 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=42.7
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.+..+||..+|+ +++.++..++.|...|+++.. .+.|.+|+.|..+.
T Consensus 21 ~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~-------~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQE-------GKQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEE-------CCeeEEChhHHHHH
Confidence 899999999999 689999999999999999998 46799999998544
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=44.20 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=55.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCC--HHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMT--LNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t--~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
..+++.+.+.|...+|... .. ++.+ +.||++.+ |+ .+..+.+.|+.|...|++++... .
T Consensus 18 ~~~l~~l~~~wrl~IL~~L---------~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~----r 79 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVL---------GN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG----Q 79 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHH---------TS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES----S
T ss_pred HHHHHHHcCccHHHHHHHH---------hc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec----C
Confidence 4456666677776666543 32 6777 99999999 99 67999999999999999998741 1
Q ss_pred cceEecCccchhhh
Q 017835 98 EEGYILTSASKLLL 111 (365)
Q Consensus 98 ~~~y~~t~~~~~l~ 111 (365)
...|++|+.++.+.
T Consensus 80 ~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 80 ITTYALTEKGMNVR 93 (111)
T ss_dssp SEEEEECHHHHHHH
T ss_pred cEEEEECccHHHHH
Confidence 35699999887544
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.018 Score=40.54 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=36.0
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
|++.|... ++.|..|||+.+|+ +...+++.|+.|...|++...
T Consensus 5 Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 44555542 68999999999999 578899999999999999954
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=40.96 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=37.7
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
|.+.|... +.+++.|||+.+++ .+..++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 44556653 79999999999999 679999999999999999998
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.032 Score=44.96 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.-.+|++.+.+... .. +++.|.++||+..++ ++..++++|..|...|++..... ..|.|.++...
T Consensus 26 ~~yAlr~L~~LA~~---~~-~~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p 90 (159)
T 3lwf_A 26 GRYGLTITLELAKR---IG-DGPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRG----AHGGYVLNGDP 90 (159)
T ss_dssp HHHHHHHHHHHHHT---TT-SCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECS----TTCEEEECSCT
T ss_pred HHHHHHHHHHHHhc---CC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecC----CCCceEecCCH
Confidence 34466666655432 22 268999999999999 57999999999999999998652 24789987543
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.016 Score=45.08 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCC
Q 017835 17 LQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSEN 95 (365)
Q Consensus 17 ~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~ 95 (365)
.-....+++++.+.|...+|... .. ++.+..+|++.+ |+ ++..+.+.|+.|...|++++....+|
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~~L---------~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~d 87 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILVAL---------RD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPVV 87 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHHHG---------GG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCCHHHHHHHHcCCcHHHHHHHH---------Hc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCCC
Confidence 34556677777777776665542 22 689999999999 79 67999999999999999998652222
Q ss_pred CccceEecCccchhhh
Q 017835 96 EQEEGYILTSASKLLL 111 (365)
Q Consensus 96 ~~~~~y~~t~~~~~l~ 111 (365)
...-.|++|+.++.+.
T Consensus 88 ~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 88 PPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECccHHHHH
Confidence 1123599999887544
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.054 Score=43.77 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
..++|++.+.+..- . +.+.|.++||+.+++ ++..++++|..|...|+++.... ..|.|++.....
T Consensus 11 ~~yAlr~l~~La~~---~--~~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p~ 75 (162)
T 3k69_A 11 FSVAVHSILYLDAH---R--DSKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTVG----KNGGYQLDLALA 75 (162)
T ss_dssp HHHHHHHHHHHHTT---T--TSCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEECS----TTCEEECCSCGG
T ss_pred HHHHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC----CCCCeEecCChh
Confidence 34566666665542 2 268999999999999 57999999999999999987652 246899886543
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.025 Score=44.35 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=49.7
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|. . ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+....+.+|+.+..+.
T Consensus 39 ~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 39 DFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 455566666 3 79999999999999 578999999999999999986422222123488888887544
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.014 Score=41.80 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=38.0
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|.+.|... +.+++.|||+.+++ .+..++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 44556553 79999999999999 5799999999999999999973
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.017 Score=46.42 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=50.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 34566666653 68999999999999 578999999999999999987532222123488998887544
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.026 Score=44.75 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccce
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG 100 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~ 100 (365)
...++++.+.|...+|... .. ++.+..||++.+++ +...+.+.|+.|...|++++....+|. .-.
T Consensus 15 ~~~l~~l~~~w~l~IL~~L---------~~--g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~ 79 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVRDA---------FE--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAESGS-HQE 79 (146)
T ss_dssp TTTHHHHCSSSHHHHHHHH---------HT--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECSSSS-CEE
T ss_pred HHHHHHhCCchHHHHHHHH---------Hh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecCCCC-eEE
Confidence 3456666667766666544 22 68999999999999 679999999999999999987532222 246
Q ss_pred EecCccchhhh
Q 017835 101 YILTSASKLLL 111 (365)
Q Consensus 101 y~~t~~~~~l~ 111 (365)
|++|+.++.+.
T Consensus 80 y~LT~~G~~l~ 90 (146)
T 2f2e_A 80 YRLTDKGRALF 90 (146)
T ss_dssp EEECHHHHTTH
T ss_pred EEECchHHHHH
Confidence 99999886443
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.056 Score=42.81 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=49.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec--cccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL--QKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~--~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++.+ .....|+..-.+.+|+.++.+.
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 45566666653 68999999999999 57899999999999999998 4321222123588998887443
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.039 Score=43.62 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
-.+|++.+.+... .. +++.|.++||+..++ ++..++++|..|...|++..... ..|.|.++....
T Consensus 11 ~yAl~~L~~La~~---~~-~~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p~ 75 (143)
T 3t8r_A 11 RYGLTLMISLAKK---EG-QGCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVRG----AKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHHHHHTT---TT-SCCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECSS----SSSEEEESSCGG
T ss_pred HHHHHHHHHHHhC---CC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecCC----CCCCeeecCCcc
Confidence 3456666555432 21 258999999999999 57999999999999999987642 147899876443
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.04 Score=43.19 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+.+||+.+++ +...+.+.|+.|...|++.+.. ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee------CceEEEchhHHHHH
Confidence 68999999999999 5789999999999999999875 57899999886443
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.029 Score=44.08 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=50.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 33 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 33 LFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 44556666543 68999999999999 678999999999999999986422222123589998887543
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.014 Score=47.43 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=48.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|...+++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 44455556542368999999999999 679999999999999999987522222123588999887544
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.02 Score=44.80 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=49.0
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ ++..+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 34556666643 79999999999999 679999999999999999987522222123588998887544
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.01 Score=46.61 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=49.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 39 QWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 34455566543 79999999999999 679999999999999999986422222123588998887544
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.024 Score=44.42 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=48.9
Q ss_pred cCccccc-ccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDII-HNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L-~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..| .. .++.|..+||+.+++ +...+.+.++.|...|++.+.....|+..-.+.+|+.+..+.
T Consensus 40 ~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 40 WLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 4455666 43 379999999999999 679999999999999999986422222123488888887544
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.018 Score=49.96 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=49.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|+.+||+.+++ +...+.|.|+.|...|++++.+. ...|++|+.+..+.
T Consensus 155 ~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-----~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 155 MKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-----DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----ccEEEECHHHHHHH
Confidence 3445555432 68999999999999 67899999999999999998742 57899999887554
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.032 Score=44.37 Aligned_cols=67 Identities=9% Similarity=0.160 Sum_probs=49.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++|+.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 45566677653 78999999999999 678999999999999999986421111123488888887544
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.022 Score=44.93 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=46.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++++.....|+....+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 42 EWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 44555666553 69999999999999 679999999999999999987422222123588888876443
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.094 Score=41.35 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=46.0
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc--cCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK--TSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~--~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..| . .++.|..+||+.+++ +...+.++++.|...|++.+.. ...|+..-.+.+|+.++.+.
T Consensus 41 ~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 41 SHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 3466677 4 379999999999999 5789999999999999999731 11121122478888887544
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.038 Score=38.54 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|+|.|+.|||+.+|+ .+..+++-|..|...|++.+..
T Consensus 22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 479999999999999 4678999999999999999874
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.025 Score=43.92 Aligned_cols=67 Identities=12% Similarity=0.283 Sum_probs=49.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 44455666543 68999999999999 568899999999999999986422222123488888887544
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.019 Score=44.65 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=48.7
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 37 ~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 37 FKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 3445555542 68999999999999 679999999999999999986422222122488998887544
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.022 Score=44.38 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=48.5
Q ss_pred cCcccccccCCC-CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAK-PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~-~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|...++ +.|..+||+.+++ +...+.+.++.|...|++.+.....|+....+.+|+.+..+.
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 344555554322 8999999999999 678999999999999999986522222122588888886444
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.011 Score=46.17 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=49.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+....+.+|+.+..+.
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 45566666543 68999999999999 679999999999999999986421111112488888887544
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.032 Score=44.10 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=46.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|...++++|..+||+.+++ +...+.++++.|...|++++.....|...-.+.+|+.++.+.
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 44555666533357899999999999 679999999999999999986521111112388888887544
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.027 Score=41.25 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=46.4
Q ss_pred cccccccCCCCCCHHHH----HHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQL----LTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~l----a~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|... ++.|..+| |+.+++ +...+.++|+.|...|++.+.... ....|.+|+.++.+.
T Consensus 13 iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 13 VLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred HHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHH
Confidence 44444432 68999999 999999 679999999999999999986410 134688998887544
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.11 Score=41.50 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=49.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 34466666643 68999999999999 678999999999999999987532222123588998887544
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.075 Score=41.91 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=47.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 43 q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 43 QYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 45556666543 79999999999999 679999999999999999987422222123588998887544
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.039 Score=43.31 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=48.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|....++.|..+||+.+++ +...+.+.++.|...|++++.....|+..-.+.+|+.+..+.
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 45566666541278999999999999 679999999999999999986421122123488888887544
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.019 Score=45.04 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=48.8
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|...-.+.+|+.+..+.
T Consensus 32 ~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 3345555543 68999999999999 679999999999999999986522222123488898887544
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.041 Score=43.12 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=45.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|... + .|..+||+.+++ +...+.+.|+.|...|++++.....|+..-.+.+|+.+..+.
T Consensus 40 ~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 40 QEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 44455666652 4 999999999999 679999999999999999986421122123588888886444
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.39 Score=43.73 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=75.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHHhccc-CCCeEEEeCCCCCC----CC--CceEEEeccccccCC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHI-ECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA----IP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~----~~--~~D~i~~~~vlh~~~ 272 (365)
.+++|+-||.|.+...+....-.. .+.++|. +..++..+. .....++.+|+.+- ++ .+|+++...-+..++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 589999999999999999884223 4677888 666666554 34556778888772 23 589999977665554
Q ss_pred hh--------HHHHHHHHHHHhcccCCCC--cEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 273 DE--------ECVKILKNCKKAIAINGKA--GKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 273 ~~--------~~~~~L~~i~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
.. ..-.++.++.++++.. . -+++++|.+..-.. + .+.+.+.+.|+
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l~~---------------------~--~~~~~i~~~l~ 137 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGFEV---------------------S--STRDLLIQTIE 137 (343)
T ss_dssp -------------CHHHHHHHHGGGC--SSCCSEEEEEEETTGGG---------------------S--HHHHHHHHHHH
T ss_pred hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCccccC---------------------H--HHHHHHHHHHH
Confidence 21 1123455444444321 1 25677776642110 0 14567888889
Q ss_pred hcCCccce
Q 017835 343 EAGFSDYK 350 (365)
Q Consensus 343 ~aGf~~~~ 350 (365)
+.||.+..
T Consensus 138 ~~GY~v~~ 145 (343)
T 1g55_A 138 NCGFQYQE 145 (343)
T ss_dssp HTTEEEEE
T ss_pred HCCCeeEE
Confidence 99987653
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.14 Score=40.40 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=48.9
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.+..+.
T Consensus 40 ~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 40 LFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 3456666542 68999999999999 679999999999999999986522222122488888876443
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.14 Score=40.21 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=49.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 34456666653 68999999999999 678999999999999999986422222123588888886443
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.017 Score=44.85 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=47.9
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++++.....|+..-.+.+|+.+..+.
T Consensus 32 ~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 32 VACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 3445555543 78999999999999 678999999999999999985421111112378888887544
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.065 Score=42.61 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=47.6
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|...+++.+..+||+.+++ +...+.++++.|...|++++.....|...-...+|+.|+.+.
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 34444433357888999999999 679999999999999999986532222123488899887544
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.046 Score=42.89 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=51.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhcC
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKD 113 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~~ 113 (365)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.....|+..-.+.+|+.+..+...
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 44455556543 68999999999999 67999999999999999998653222212348899988855543
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.051 Score=43.35 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=48.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|....++.|..+||+.+++ +...+.++++.|...|++.+.....|+..-.+.+|+.+..+.
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 45577777322378999999999999 568899999999999999986421121122488888887544
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.039 Score=43.82 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=61.6
Q ss_pred CCCchHhhhHHHHHHHHHHhHHHHHHHH---HHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc
Q 017835 10 DNISDELLQSQAHVWNNIFSFVNSMSLK---CAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF 86 (365)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~g~~~~~~L~---~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~ 86 (365)
++..........++...+.......+-. ...++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|+
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gl 87 (154)
T 2eth_A 12 HMDALEIFKTLFSLVMRFSSYLPSNEEISDMKTTELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGL 87 (154)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCCHHHHHSBHHHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCC
Confidence 3344444444455555444333221111 12345566666543 68999999999999 67899999999999999
Q ss_pred eeccccCCCCccceEecCccchhhh
Q 017835 87 FALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 87 l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++.....|+..-.+.+|+.++.+.
T Consensus 88 i~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 88 VVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp EEEEECTTTSSCEEEEECHHHHHHH
T ss_pred EEeeCCCCCcceeEEEECHHHHHHH
Confidence 9986422222123488888887544
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.023 Score=45.54 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=50.0
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|... ++.|..+||+.+++ +...+.++|+.|...|++++.....|+....+.+|+.++.+.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45566677653 78999999999999 678999999999999999986421122123488888887444
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.036 Score=44.40 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=47.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++++.....|+....|.+|+.++.+.
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 44566666653 79999999999999 678999999999999999986421121123478888876444
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.035 Score=43.79 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=48.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+....+.+|+.++.+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 34455666543 68999999999999 679999999999999999986422121123488888887544
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.032 Score=38.22 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=46.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
+-.|++.|.+++.|++..+||+.+|+ +..-+.+.|..|-..|.+.... .-+|.++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC------CceeeCC
Confidence 44566667766689999999999999 6788999999999999999876 5678776
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.046 Score=42.44 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=49.0
Q ss_pred HcCcccccccCC-CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHA-KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~-~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|...+ ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 344455555432 48999999999999 679999999999999999987522222123488898887544
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.032 Score=44.63 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=48.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 3345555543 78999999999999 679999999999999999987532222122488888887544
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.028 Score=43.14 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=38.7
Q ss_pred HcCcccccccCCCC-CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKP-MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~-~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..|+..|...++| +|+.+||+.+++ +...+.|.|+.|...|++.+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 34455555543356 999999999999 6799999999999999999863
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.092 Score=41.47 Aligned_cols=62 Identities=8% Similarity=0.167 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccch
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASK 108 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 108 (365)
...+|++.+.+..- . ++ |+++||+..++ ++..++++|..|...|++.... | .|.|+++.-..
T Consensus 8 ~~yAl~~L~~La~~----~--~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r----G-~GGy~Lar~p~ 69 (145)
T 1xd7_A 8 LAVAIHILSLISMD----E--KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA----G-VPGASLKKDPA 69 (145)
T ss_dssp HHHHHHHHHHHHTC----S--CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS----S-SSSCEESSCGG
T ss_pred HHHHHHHHHHHHhC----C--CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec----C-CCCceecCCHH
Confidence 44566666665432 1 34 99999999999 5799999999999999999875 3 57888886543
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.098 Score=40.70 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
++.|..+||+.+++ +...+.+.|+.|...|++.+. .+.|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~-------~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKK-------EDGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEec-------CCeEEEChhHHHH
Confidence 68999999999999 578999999999999999987 3679999887643
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=93.03 E-value=0.074 Score=40.84 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=48.1
Q ss_pred CcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 43 GIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.++..|... +++.|..+||+.+++ +...+.++|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 344444431 268999999999999 578999999999999999986432222223488998887544
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.01 E-value=0.043 Score=42.84 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=49.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 45556666643 68999999999999 568899999999999999986522222122578888887444
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.072 Score=38.61 Aligned_cols=52 Identities=6% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.|..+||+.+++ +...+.++|+.|...|++.... |+....|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~---d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECEL---EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCC---CCCeEEEEEChhHHHHH
Confidence 4999999999999 6799999999999999994332 11012489998887544
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.12 Score=43.87 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++.|..+||+.+++ ++..+.+.|+.|...|++++.. +..+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec------CCCeEECHHHHHHH
Confidence 379999999999999 6799999999999999999986 57899999987433
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.53 Score=35.37 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=47.4
Q ss_pred CCchHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 11 NISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.-.+....-...++..+..... +.++..|.. ++.|+.+||+.+++ +...+.+.|+.|...|++...
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~---------~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 13 PLDSQAAAQVASTLQALATPSR---------LMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHH---------HHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEE
T ss_pred ccCHHHHHHHHHHHHHhCCHHH---------HHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3334444445555554444444 444445554 47999999999999 679999999999999999876
Q ss_pred c
Q 017835 91 K 91 (365)
Q Consensus 91 ~ 91 (365)
.
T Consensus 79 ~ 79 (119)
T 2lkp_A 79 R 79 (119)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.045 Score=43.35 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=48.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++++.....|+..-.+.+|+.++.+..
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 34456666543 78999999999999 6799999999999999999864211111225888988875543
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.036 Score=40.92 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=37.8
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+.|+..|... ++.|+.+||+.+++ +...+.+.|+.|...|++....
T Consensus 23 ~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 23 VRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3344555432 68999999999999 6799999999999999999864
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.15 Score=39.79 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=49.2
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++ |..+||+.+++ +...+.+.++.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 39 DFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 45667777653 45 99999999999 679999999999999999987521111011489999887544
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.055 Score=43.12 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..+||+.+++ +...+.+.|+.|...|++.... +..+.+|+.+..+.
T Consensus 53 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 53 GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP------WRGVFLTAEGEKLA 102 (155)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec------CCceEEChhHHHHH
Confidence 67899999999999 6789999999999999999875 46788998886443
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=92.64 E-value=0.16 Score=36.93 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
++.+..+||+.+++ +...+.|.|..|...|+++.... +|+ -+...+|+.++.
T Consensus 35 ~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~-~D~-R~~v~LT~~G~~ 86 (96)
T 2obp_A 35 TPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE-ADG-RGHASLTQEGAA 86 (96)
T ss_dssp CCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-TTS-CEEEEECHHHHH
T ss_pred CCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC-CCC-ceeEEECHHHHH
Confidence 67899999999999 67999999999999999998543 333 345788887763
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.1 Score=42.06 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=58.1
Q ss_pred CchHhhhHHHHHHHHHHhHHHHHHHH---HHHHcCcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCce
Q 017835 12 ISDELLQSQAHVWNNIFSFVNSMSLK---CAIQLGIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFF 87 (365)
Q Consensus 12 ~~~~~~~~~~~l~~~~~g~~~~~~L~---~a~~lglf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l 87 (365)
..........++...+...+...+-. ...++.++..|... +++.|+.+||+.+++ +...+.++++.|...|++
T Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv 92 (168)
T 3u2r_A 16 LTQEAYLQLWRTYDRMKAIEEEIFSQFELSAQQYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLV 92 (168)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCE
Confidence 34445555555544444433322211 12344556666543 259999999999999 568999999999999999
Q ss_pred eccccCCCCccceEecCccchhhh
Q 017835 88 ALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 88 ~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.....|+..-.+.+|+.++.+.
T Consensus 93 ~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 93 LRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp EEEEETTEEEEEEEEECHHHHHHH
T ss_pred eecCCCCCCCeeEeEECHHHHHHH
Confidence 986521111112488888887544
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.032 Score=43.64 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=49.1
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++++.....|+....|.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 45556666542 68999999999999 578999999999999999986421111112478888887544
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=92.54 E-value=0.057 Score=42.49 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=41.3
Q ss_pred cCcccccccCC-CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHA-KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~-~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.++..|...+ ++.|..+||+.+++ +...+.++++.|...|++++.....|...-.+.+|+.++.+.
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 34455555322 68999999999999 568899999999999999987522221122478888887544
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.036 Score=40.68 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
++.|+.+||+.+|+ ++..+.+.|+.|... ++..... |....|++++..
T Consensus 40 ~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~~---gr~~~y~l~~~~ 87 (99)
T 2zkz_A 40 KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNRQ---GLEIYYSINNPK 87 (99)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEEE---TTEEEEECCCHH
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheEe---CcEEEEEEChHH
Confidence 68999999999999 579999999999999 9986542 112358877643
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=92.36 E-value=0.035 Score=40.31 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHcCCCCCCcch-HHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQC-VYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.+.|..+||+.+++ +... +.++|+.|...|++..+. .|.....+.+|+.++.+.
T Consensus 29 ~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~--~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 29 YEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEET--LSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp CCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEE--EETTEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCC--CCCCeEEEEECHhHHHHH
Confidence 38999999999999 5788 999999999999999432 111123478888887444
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.031 Score=43.54 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=48.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 38 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 38 QWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 45556666543 68999999999999 678999999999999999986421111112378888877544
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.17 Score=32.26 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
.++|+.|+|...++ +-...+.-|+.|.+.|-+.+. ..+|++.+-
T Consensus 17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKR-------sSRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKR-------SSRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------CCEEEECC-
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhh-------ccccccCcc
Confidence 79999999999999 578889999999999999998 488988764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=91.91 E-value=1.4 Score=40.48 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=65.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhccc-CCCeEEEeCCCCCC----C-------CCceEEEeccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIE-CTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA----I-------PPADAVLIKCV 267 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~----~-------~~~D~i~~~~v 267 (365)
.+++|+=||.|.++..+.+. +.+ +.++|. +..++..+. .....++.+|+.+- + +.+|+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 58999999999999999988 455 457888 666665554 45677888888762 2 35999999777
Q ss_pred cccCC-------hhHHHHHHHHHHH---hcccCCCCcEEEEEeeecC
Q 017835 268 LHNWN-------DEECVKILKNCKK---AIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 268 lh~~~-------~~~~~~~L~~i~~---~L~p~~~gG~lli~e~~~~ 304 (365)
+..++ ++....++.+..+ .++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchH
Confidence 66664 1222344444444 4456 6788887653
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=91.60 E-value=0.091 Score=44.08 Aligned_cols=68 Identities=16% Similarity=0.297 Sum_probs=47.7
Q ss_pred HHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccC--CCCccceEecCccch
Q 017835 36 LKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTS--ENEQEEGYILTSASK 108 (365)
Q Consensus 36 L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~~~y~~t~~~~ 108 (365)
|..-.++.|+..|.. +|.|+.+||+.+++ +...+.+.|+.|...|++...... .++..-.|++++...
T Consensus 12 L~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 12 LGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred hCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 333344455555544 79999999999999 578999999999999999985421 011123588777553
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.53 E-value=0.24 Score=43.15 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=34.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK 240 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 240 (365)
.++..|||..||+|..+.+..+. +.+++++|+ +..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 56789999999999999988876 679999999 77777665
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.13 Score=42.49 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=50.6
Q ss_pred HcCcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... +++.|+.+||+.+++ +...+.++|+.|...|++++.....|...-.+.+|+.++.+.
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 45555666531 268999999999999 678999999999999999986532222123589999887544
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.39 Score=43.45 Aligned_cols=127 Identities=14% Similarity=0.075 Sum_probs=79.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeE--EEeec-hHHHHhccc--CCCeEEEeCCCCCC----CC--CceEEEeccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIEC--TVFDQ-PHVVADLKS--NGNLKYVGGNMFEA----IP--PADAVLIKCV 267 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~--~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~----~~--~~D~i~~~~v 267 (365)
+...+++|+-||.|.+...+.+..-+.++ .++|. +..++..+. ... +..+|+.+- ++ .+|+++...-
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpP 85 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPP 85 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCC
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCC
Confidence 34569999999999999999887422344 58888 655555443 222 567888762 23 5899998776
Q ss_pred cccC-----------ChhHHHHHHHHHHH-hcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHH
Q 017835 268 LHNW-----------NDEECVKILKNCKK-AIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEK 335 (365)
Q Consensus 268 lh~~-----------~~~~~~~~L~~i~~-~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~ 335 (365)
+..+ .|+ .-.++.++.+ +++.....-+++++|.+..-.. + .+.+
T Consensus 86 CQ~fs~S~ag~~~~~~d~-r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~---------------------~--~~~~ 141 (327)
T 3qv2_A 86 CQPYNNSIMSKHKDINDP-RAKSVLHLYRDILPYLINKPKHIFIENVPLFKE---------------------S--LVFK 141 (327)
T ss_dssp CTTCSHHHHTTTCTTTCG-GGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG---------------------S--HHHH
T ss_pred ccCcccccCCCCCCCccc-cchhHHHHHHHHHHHhccCCCEEEEEchhhhcC---------------------h--HHHH
Confidence 6666 233 2356666666 5532000136788887642100 1 2457
Q ss_pred HHHHHHHhcCCccceE
Q 017835 336 EWAKLFFEAGFSDYKI 351 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~ 351 (365)
.+.+.|++.||.+...
T Consensus 142 ~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 142 EIYNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhCCCEEEEE
Confidence 7888899999986533
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=91.38 E-value=0.089 Score=38.11 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=45.4
Q ss_pred cccccccCCCCCCHHHHHH-HcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLT-TLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~-~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
|+-.|... ++.|+.+||+ .+++ +...+.|-++.|...|+++.++ ++ +.+|+.++.+.
T Consensus 21 iL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~------~D-l~LT~~G~~~l 78 (95)
T 1bja_A 21 ILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG------DG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET------TE-EEECHHHHHHH
T ss_pred HHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC------CC-eeeCHhHHHHH
Confidence 34445543 6899999999 9999 6789999999999999999333 34 99999887544
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.11 Score=41.00 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++|..+||+.+++ +...+.++++-|...|++++....+|+..-...+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 68999999999999 679999999999999999987532222112488888887544
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=91.08 E-value=0.041 Score=47.23 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceec-cccCC-CCc-cceEecCccch
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFAL-QKTSE-NEQ-EEGYILTSASK 108 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~-~~~~~-~~~-~~~y~~t~~~~ 108 (365)
+++|.--.++.|+..|.. +|.|+.+||+.+|+ ....+.+.|+.|...|++.. ...+. .|. ...|++++.+.
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 344444456667777774 79999999999999 57899999999999999998 33100 000 12488887664
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.63 Score=40.41 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=64.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec----hHH------------------------HHhc----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK-------FPHIECTVFDQ----PHV------------------------VADL---- 239 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~~a---- 239 (365)
.-...|+|+|+-.|..+..++.. .++-++.++|. |+. +...
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 33579999999999988886652 46678999983 221 1100
Q ss_pred ---cc----CCCeEEEeCCCCCC-------CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 240 ---KS----NGNLKYVGGNMFEA-------IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 240 ---~~----~~~i~~~~~d~~~~-------~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+. .++|+++.|++.+. .| .+|++.+-.=. -+.....+..+...|+| |.++++|-
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~----GGvIv~DD 217 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTK----GSIVAFDE 217 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEE----EEEEEESS
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCC----CcEEEEcC
Confidence 01 37899999999872 23 38888875421 12346789999999999 55555554
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.01 E-value=0.032 Score=45.84 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=47.6
Q ss_pred HcCcccccccCCC--CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAK--PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~--~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|...++ +.|..+||+.+++ +...+.++|+.|...|++++.....|+..-.+.+|+.++.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4556666764323 3999999999999 568899999999999999986421111112488888887544
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=90.91 E-value=1.7 Score=39.11 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=74.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhccc-CCCeEEEeCCCCC----CCCCceEEEeccccccCCh
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIE-CTVFDQ-PHVVADLKS-NGNLKYVGGNMFE----AIPPADAVLIKCVLHNWND 273 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~~~~ 273 (365)
..+++|+-||.|.+...+... +.+ +..+|. +..++..+. ..... .+|+.+ ..+.+|+++...-+..++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 469999999999999999887 454 556787 655555443 11111 577776 2457999998766555531
Q ss_pred --------hHHHHHHHH---HHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 274 --------EECVKILKN---CKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 274 --------~~~~~~L~~---i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
+..-.++.+ +.+.++| +++++|.+..-.. .....+.+.+.+.|+
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l~ 141 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKNFAS--------------------HDNGNTLEVVKNTMN 141 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGGGGT--------------------GGGGHHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHHHHh--------------------ccccHHHHHHHHHHH
Confidence 111123333 3334566 5778887642210 011125677888899
Q ss_pred hcCCccce
Q 017835 343 EAGFSDYK 350 (365)
Q Consensus 343 ~aGf~~~~ 350 (365)
+.||.+..
T Consensus 142 ~~GY~v~~ 149 (327)
T 2c7p_A 142 ELDYSFHA 149 (327)
T ss_dssp HTTBCCEE
T ss_pred hCCCEEEE
Confidence 99998643
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.11 Score=40.13 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=45.3
Q ss_pred HHHHcCcccccccCCCCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEec
Q 017835 38 CAIQLGIPDIIHNHAKPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYIL 103 (365)
Q Consensus 38 ~a~~lglf~~L~~~~~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~ 103 (365)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... |+ ..+|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~~~-~~-~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLHTD-TG-ESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEECT-TS-CEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEEeC-CC-ceEEEe
Confidence 344566777776544799999999998 56 578899999999999999986531 11 345764
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=90.06 E-value=1.6 Score=34.41 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=53.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCceeccccCCCC-c
Q 017835 20 QAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFFALQKTSENE-Q 97 (365)
Q Consensus 20 ~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~-~ 97 (365)
..++...+.+.....+|...+.- + .+..|+++|++.++ + ....+++.|+.|+..|++++.....+. .
T Consensus 19 ~~~~~~~l~~~tR~~IL~~Ll~~------p--~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~~ 87 (151)
T 3u1d_A 19 ELERRRFVLHETRLDVLHQILAQ------P--DGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKSV 87 (151)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHS------T--TSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTTS
T ss_pred HHHHHHHhcchHHHHHHHHHHcC------C--CCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCccc
Confidence 44555555566666655554432 1 14689999999988 7 578999999999999999965321000 0
Q ss_pred cc----eEecCccchh
Q 017835 98 EE----GYILTSASKL 109 (365)
Q Consensus 98 ~~----~y~~t~~~~~ 109 (365)
.+ .|.+|+.++.
T Consensus 88 rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 88 DDPPTTFYAVTGEGIA 103 (151)
T ss_dssp SSCCCEEEEECHHHHH
T ss_pred CCCCceEEEECHHHHH
Confidence 12 6999999984
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=0.23 Score=39.12 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=44.8
Q ss_pred HHcCcccccccCCCCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.+.-|++.|...+++.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... ++ ..+|.+.
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~-~~-~~~Y~~~ 87 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTYG-DA-SSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECCT-TS-CCEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEeeC-CC-ceEEECC
Confidence 4455777776544799999999998 55 568899999999999999986531 11 3457654
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=89.78 E-value=0.23 Score=36.42 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|..+||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 68999999999999 5789999999999999999875
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=0.69 Score=46.36 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=57.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHC-------CC-----CeEEEeec-h---HHHHhcc-----------------------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKF-------PH-----IECTVFDQ-P---HVVADLK----------------------- 240 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~----------------------- 240 (365)
+.-+|+|+|-|+|.....+.+.+ |. ++++.++. | ..+..+-
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999999887776643 22 56888875 3 2222110
Q ss_pred --c----CC--CeEEEeCCCCC---CC-----CCceEEEecccc-ccCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 241 --S----NG--NLKYVGGNMFE---AI-----PPADAVLIKCVL-HNWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 241 --~----~~--~i~~~~~d~~~---~~-----~~~D~i~~~~vl-h~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
+ .. ++++.-||+.+ .+ ..+|.+++--.- +.-++--..++++.+.+.++| |+++.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEE
Confidence 0 11 45667888765 22 248988874321 111221125688999999998 66544
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=89.55 E-value=0.23 Score=41.27 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=43.4
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+++....+..|+..|.+ ++.|..+||+.+|+ .+..+.+.|+.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 33444556677888874 79999999999999 578999999999999999986
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=89.52 E-value=0.094 Score=36.79 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=37.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCC-CCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHP-TKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~-~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|++.|.. .++.|+.||++.++..+ -+...+.++|+.|...|++.+..
T Consensus 12 ~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 344555544 26899999999997310 04688999999999999999875
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=89.44 E-value=0.097 Score=44.05 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=48.2
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.|+..|... ++.|..+||+.+++ +...+.++|+.|...|++.+.....|+..-.+.+|+.++.+.
T Consensus 51 ~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 51 HHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 4455566543 68999999999999 679999999999999999987522221122588999887544
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=89.36 E-value=1.2 Score=39.05 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=70.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC----CC---CceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA----IP---PADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~----~~---~~D~i~~~~v 267 (365)
+...+||+=+|||.+++++++. .-+++.+|. +..++..++ ..+++++..|.++. .| .+|+|++---
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred cCCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 3567899999999999999983 568999999 777776664 46899999997661 12 4999998554
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
... ..+..++++.+.+..+- .++|.++|-=++...
T Consensus 169 Ye~--k~~~~~vl~~L~~~~~r-~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 169 YER--KEEYKEIPYAIKNAYSK-FSTGLYCVWYPVVNK 203 (283)
T ss_dssp CCS--TTHHHHHHHHHHHHHHH-CTTSEEEEEEEESSH
T ss_pred CCC--CcHHHHHHHHHHHhCcc-CCCeEEEEEEeccch
Confidence 431 12345666666654331 117888887666543
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=0.2 Score=39.54 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=39.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|+..|.. +++.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 5 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 4556777775 378999999999999 579999999999999999874
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=89.04 E-value=0.096 Score=39.04 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=36.1
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.|+..+...+.+.|..+||+.+|+ +...+++.|+.|...|++...
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 344444322247999999999999 578899999999999999876
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=89.00 E-value=0.11 Score=42.78 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=51.0
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcC-CCCCCcchHHHHHHHHHhcCceeccccC--CCCccceEecCccchhh
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQ-IHPTKTQCVYHLMRILVHSGFFALQKTS--ENEQEEGYILTSASKLL 110 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~~~y~~t~~~~~l 110 (365)
++|.-=.++.|+..|.. ++.|+.+|++.++ + +...+.+.|+.|...|+++..... .++....|++++.+-.+
T Consensus 18 ~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~ 92 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA 92 (182)
T ss_dssp HHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence 34444467778888875 7999999999996 7 467899999999999999865421 01112458887765433
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.27 Score=38.73 Aligned_cols=55 Identities=11% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+++|..+||+.+++ +...+.++++.|...|++.... .+|+..-...+|+.|+.+.
T Consensus 51 ~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~-~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 51 IDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMA-GADARCKRIELTAKGRAAL 105 (148)
T ss_dssp ---CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeC-CCCCCeeEEEECHHHHHHH
Confidence 56899999999999 6799999999999999995432 1221112477888776443
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=88.98 E-value=0.51 Score=44.09 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=42.8
Q ss_pred cCCCeEEEecCCccHHHHHHH-HHCCC-CeEEEeec-hHHHHhccc---------C-CCeEEEeCCCCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIA-KKFPH-IECTVFDQ-PHVVADLKS---------N-GNLKYVGGNMFE 254 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---------~-~~i~~~~~d~~~ 254 (365)
+++..++|||++.|.++..++ +..+. .+++.++. |...+..++ . .+++++..-+.+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 678999999999999999988 56665 79999998 777666553 2 567776654443
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=88.70 E-value=0.44 Score=32.63 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=35.6
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 46 DIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 46 ~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+.|.. +...|+.+||.++|+ +...+.|.|--|...|.+....
T Consensus 22 ~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 22 LSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCC
Confidence 35665 245999999999999 5688999999999999998875
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.55 E-value=1.3 Score=35.09 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=40.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFE 254 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~ 254 (365)
.-..-|+|+|=|+|..=-.|.+.+|+-++.++|..-.+.-....+.=.++.||+.+
T Consensus 39 ~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 39 GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 34568999999999999999999999999999962222111113344567777766
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=88.43 E-value=0.086 Score=40.05 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHcC----CCCCCcchHHHHHHHHHhcCceeccccCCCCccce---EecCccchhhh
Q 017835 53 KPMTLNQLLTTLQ----IHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG---YILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~----~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~---y~~t~~~~~l~ 111 (365)
++.|+.+||+.++ + ....+.++|+.|...|++.+... +.+ +.+|+.+..+.
T Consensus 23 ~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~-----~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 23 KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD-----NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE-----TTEEEEEESSCHHHHHH
T ss_pred CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec-----CCeEEEEEecCHHHHHH
Confidence 6899999999999 5 46889999999999999998752 222 46777776544
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=88.36 E-value=0.11 Score=38.18 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=38.8
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCC-CCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIH-PTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~-~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|+..|... ++.|+.||++.++.. +-+...+.++|+-|...|++.+..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 34556666542 689999999999852 013578999999999999999976
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=88.32 E-value=0.91 Score=41.08 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=78.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHHhccc-CCCeEEEeCCCCCC----CC--CceEEEeccccccCC
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIE-CTVFDQ-PHVVADLKS-NGNLKYVGGNMFEA----IP--PADAVLIKCVLHNWN 272 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~----~~--~~D~i~~~~vlh~~~ 272 (365)
.+++|+=||.|.+...+.+..-+.+ +.++|. +..++..+. .....+..+|+.+- ++ .+|+++...-+..++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 4899999999999999998843334 567787 555554443 34455677888761 23 589999876655543
Q ss_pred ---------hhHHHHHHHHHHHhcccCCCC-cEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 273 ---------DEECVKILKNCKKAIAINGKA-GKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 273 ---------~~~~~~~L~~i~~~L~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
|+ .-.++.++.+.++.. . -+++++|.+..-.. + .+.+.+.+.|+
T Consensus 84 ~ag~~~~~~d~-r~~L~~~~~r~i~~~--~~P~~~vlENV~gl~~---------------------~--~~~~~i~~~l~ 137 (333)
T 4h0n_A 84 RNGKYLDDNDP-RTNSFLYLIGILDQL--DNVDYILMENVKGFEN---------------------S--TVRNLFIDKLK 137 (333)
T ss_dssp ETTEECCTTCT-TSCCHHHHHHHGGGC--TTCCEEEEEECTTGGG---------------------S--HHHHHHHHHHH
T ss_pred hhhhccCCcCc-ccccHHHHHHHHHHh--cCCCEEEEecchhhhh---------------------h--hHHHHHHHHHH
Confidence 22 123455555544320 1 36788887652210 0 13467888899
Q ss_pred hcCCccceEE
Q 017835 343 EAGFSDYKIT 352 (365)
Q Consensus 343 ~aGf~~~~~~ 352 (365)
+.||.+....
T Consensus 138 ~~GY~v~~~v 147 (333)
T 4h0n_A 138 ECNFIYQEFL 147 (333)
T ss_dssp HTTEEEEEEE
T ss_pred hCCCeEEEEE
Confidence 9999865443
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=88.31 E-value=0.32 Score=37.81 Aligned_cols=60 Identities=12% Similarity=0.272 Sum_probs=44.3
Q ss_pred HHcCcccccccCC-CCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 40 IQLGIPDIIHNHA-KPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 40 ~~lglf~~L~~~~-~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.+.-|++.|...+ ++.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... ++ ..+|.++
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~-~~-~~~Y~~~ 84 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHNFD-GG-HAVFELA 84 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEECSS-SS-SCEEEES
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEEeC-CC-ceEEEeC
Confidence 3455777777554 689999999998 55 568899999999999999986521 11 3467753
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=88.24 E-value=0.56 Score=34.26 Aligned_cols=53 Identities=8% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHcCccc-ccccCCCCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 35 SLKCAIQLGIPD-IIHNHAKPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 35 ~L~~a~~lglf~-~L~~~~~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+...++..|.+ .+.. +..+ |..+||+.+|+ ....+++-|+.|...|++....
T Consensus 15 ~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 344445555665 3443 3456 99999999999 5688999999999999998875
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=87.95 E-value=0.4 Score=37.41 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=46.0
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCC--CCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQI--HPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~--~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
..+.-|++.|...+++.|++||.+.+.- +..+..-++|.|+.|+..|++.+.... ++ ..+|.+..
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~g-~~~Y~~~~ 80 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTA-EG-ESVYRRCS 80 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECT-TS-CEEEECCS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcC-CC-ceEEEECC
Confidence 4456677777765579999999998831 111567899999999999999986521 11 34677643
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=87.92 E-value=0.24 Score=38.83 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=38.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..+||+++|+ ++..+.+.|+.|...|++.+.
T Consensus 7 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3456666665 378999999999999 579999999999999999864
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=87.82 E-value=0.24 Score=39.08 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=38.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|+..|.. +++.|..+||+++|+ ++..+.+.|+.|...|++.+.
T Consensus 9 ~~~iL~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAA-DGRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3455666664 378999999999999 578999999999999999764
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=1.7 Score=43.36 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=56.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHC-------CC-----CeEEEeec----hHHHHhc-c----------c-----------
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKF-------PH-----IECTVFDQ----PHVVADL-K----------S----------- 241 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a-~----------~----------- 241 (365)
+.-+|+|+|-|+|.......+.+ |. ++++.++. ++.+..+ . +
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34699999999998877765543 22 56888875 2233211 0 0
Q ss_pred -------C--CCeEEEeCCCCC---CC-----CCceEEEeccccc-cCChhHHHHHHHHHHHhcccCCCCcEEE
Q 017835 242 -------N--GNLKYVGGNMFE---AI-----PPADAVLIKCVLH-NWNDEECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 242 -------~--~~i~~~~~d~~~---~~-----~~~D~i~~~~vlh-~~~~~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
. -++++.-+|+.+ .+ ..+|++++--.-- .-++--..++|+.+++.++| ||++.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE---EEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC---CCEEE
Confidence 1 233456677765 12 2489988743221 11111135689999999999 66654
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=87.23 E-value=0.3 Score=40.28 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=43.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc-eeccccCCCCccceEecCcc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF-FALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~~y~~t~~ 106 (365)
...|++.|...+++.|+.+||+.+|+ ..+.+++-|+.|...|+ +... .+.|.+.+.
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~-------~~Gy~l~~~ 79 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-------TTEEECCTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE-------CCEEEECCc
Confidence 45567777643357999999999999 57999999999999999 7654 466776643
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.22 E-value=0.31 Score=39.10 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+..|++.|.. ++++|..+||+++|+ .+..+.+-++.|...|++...
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 35567788876 489999999999999 579999999999999999854
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.33 Score=38.48 Aligned_cols=62 Identities=11% Similarity=0.303 Sum_probs=46.1
Q ss_pred HHHHcCcccccccCCCCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 38 CAIQLGIPDIIHNHAKPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 38 ~a~~lglf~~L~~~~~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... ++ ..+|...
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~-~~-~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLETS-KS-GRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEET-TT-EEEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEEeC-CC-ceEEEec
Confidence 445566788887545799999999988 45 568899999999999999986531 11 2357653
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=86.90 E-value=0.29 Score=39.18 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=38.4
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..|||+++|+ ++..+.+.|+.|...|++...
T Consensus 12 ~~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQE-NGRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence 3445666665 378999999999999 578999999999999999864
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=86.79 E-value=0.29 Score=42.41 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=50.3
Q ss_pred HcCcccccccCC-CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHA-KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~-~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+..|...+ ++.|..+||+.+++ ++..+.++++-|...|++.+....+|...-...+|+.++.+.
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 344566666433 25999999999999 679999999999999999997633222122478888887544
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=86.67 E-value=0.27 Score=38.89 Aligned_cols=46 Identities=9% Similarity=0.173 Sum_probs=38.7
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..+||+++|+ ++..+.+.|+.|...|++...
T Consensus 10 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMG-NARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHH-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence 3456666765 378999999999999 578999999999999999964
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=3.7 Score=36.68 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=75.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeE-EEeec-hHHHHhcccCCCeEEEeCCCCC----CCCCceEEEeccccccCC---
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIEC-TVFDQ-PHVVADLKSNGNLKYVGGNMFE----AIPPADAVLIKCVLHNWN--- 272 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~~~--- 272 (365)
.+|||+=||.|.+...|.+. +.++ .++|. +..++..+....-.++.+|+.+ .+|..|+++...-+..++
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag 78 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGG 78 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETT
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCC
Confidence 37899999999999998887 4554 46676 5555544432233567888876 356799998865554432
Q ss_pred ------hhHHHHHHHHH---HHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh
Q 017835 273 ------DEECVKILKNC---KKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE 343 (365)
Q Consensus 273 ------~~~~~~~L~~i---~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 343 (365)
|+. -.++.++ .+.++| +++++|.+..-.. ........++.+.|++
T Consensus 79 ~~~g~~d~R-~~L~~~~~r~i~~~~P-----k~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l~~ 132 (331)
T 3ubt_Y 79 SLRGIDDPR-GKLFYEYIRILKQKKP-----IFFLAENVKGMMA--------------------QRHNKAVQEFIQEFDN 132 (331)
T ss_dssp EECCTTCGG-GHHHHHHHHHHHHHCC-----SEEEEEECCGGGG--------------------CTTSHHHHHHHHHHHH
T ss_pred CccCCCCch-hHHHHHHHHHHhccCC-----eEEEeeeeccccc--------------------ccccchhhhhhhhhcc
Confidence 332 2344443 444566 6788887642110 0111245677888899
Q ss_pred cCCccc
Q 017835 344 AGFSDY 349 (365)
Q Consensus 344 aGf~~~ 349 (365)
.||.+.
T Consensus 133 ~GY~v~ 138 (331)
T 3ubt_Y 133 AGYDVH 138 (331)
T ss_dssp HTEEEE
T ss_pred CCcEEE
Confidence 998754
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=86.18 E-value=2.1 Score=39.42 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=38.7
Q ss_pred chHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-------CCCeEEEeechHHHH
Q 017835 169 TRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-------PHIECTVFDQPHVVA 237 (365)
Q Consensus 169 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~~ 237 (365)
|+....|.+.+..... .+.+.+. .+..-+|+|+|+|+|.++..+++.. ..+++..+|.++.+.
T Consensus 55 peis~~FGe~la~~~~----~~w~~~g--~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 55 PEISQMFGELLGLWSA----SVWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp HHHCHHHHHHHHHHHH----HHHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CchHHHHHHHHHHHHH----HHHHHcC--CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 4555566655543321 1112222 2344689999999999998887652 345899999844333
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=85.84 E-value=0.29 Score=38.68 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=38.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 9 ~~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3456666665 378999999999999 578999999999999999864
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=85.71 E-value=0.3 Score=37.99 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=37.7
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|+..|.. +++.|..+||+.+|+ ++..+.+.|+.|...|++...+
T Consensus 7 ~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 7 KIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeccc
Confidence 345556654 368999999999999 5789999999999999998653
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.62 E-value=4.5 Score=36.84 Aligned_cols=93 Identities=20% Similarity=0.187 Sum_probs=60.5
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHHhcccCCCeEEEeC---CCCCC----CC-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHI-ECTVFDQ-PHVVADLKSNGNLKYVGG---NMFEA----IP-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~~----~~-~~D~i~~~~ 266 (365)
.+++.+||-+|+|. |.++..+++.. ++ +++++|. +...+.+++..--.++.. |+.+. .+ .+|+|+-.-
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~ 266 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST 266 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence 56788999999886 78888888875 45 6889986 666666654111112221 11110 11 588887543
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
- . ...++.+.+.|+| +|+++++-..
T Consensus 267 g-----~---~~~~~~~~~~l~~---~G~iv~~G~~ 291 (371)
T 1f8f_A 267 G-----S---PEILKQGVDALGI---LGKIAVVGAP 291 (371)
T ss_dssp C-----C---HHHHHHHHHTEEE---EEEEEECCCC
T ss_pred C-----C---HHHHHHHHHHHhc---CCEEEEeCCC
Confidence 2 1 2457888999999 8999887543
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=85.58 E-value=0.27 Score=31.42 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=39.3
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
-.|++.|..++|=+.+..+++.+|+ +.+-+..+|+-|.+.|++.-+
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 3467777777788999999999999 578899999999999998754
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.52 E-value=0.35 Score=38.18 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|+..|.. +++.|..+||+++|+ ++..+.+.++.|...|++.+.
T Consensus 11 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSE-NSRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 4456667765 378999999999999 578999999999999999864
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=85.29 E-value=6.7 Score=35.12 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=61.2
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---C----CCCceEEEecccc
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---A----IPPADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~~~D~i~~~~vl 268 (365)
.+++.+||-+|+|. |.++..+++.. +++++++|. ++-.+.+++..--.++..+-.+ . .+.+|+++....
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 57788999999875 88888898876 569999997 7767776652211122111111 0 125788866432
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
. ...++.+.+.|+| +|+++++-.
T Consensus 242 ----~---~~~~~~~~~~l~~---~G~iv~~G~ 264 (340)
T 3s2e_A 242 ----S---PKAFSQAIGMVRR---GGTIALNGL 264 (340)
T ss_dssp ----C---HHHHHHHHHHEEE---EEEEEECSC
T ss_pred ----C---HHHHHHHHHHhcc---CCEEEEeCC
Confidence 1 3467888899999 899888754
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.19 E-value=0.4 Score=38.87 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=38.7
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|++.|.. +++.|..+||+++|+ ++..+.+.|+.|...|++...
T Consensus 19 d~~IL~~L~~-~~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKK-DARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 3456677765 378999999999999 578999999999999999864
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=84.96 E-value=1.1 Score=38.16 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..++|+++++ .+..+.+.++.|...|++.+.... ....+++|+.++.+.
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~~---R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVTK---RGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEcC---CeEEEEECHHHHHHH
Confidence 68999999999999 679999999999999999997310 026699999998655
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.44 E-value=0.43 Score=39.61 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|.|..|||+++|++ ...+.+.|+.|...|++.+..
T Consensus 23 ~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 23 YPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence 589999999999995 557999999999999999874
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=84.43 E-value=0.71 Score=39.32 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=41.2
Q ss_pred CCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 55 MTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 55 ~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.+..+||+.+++ +...+.+.|+.|...|++++.. +..+.+|+.++.+.
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG------DRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC------CccEEECHHHHHHH
Confidence 345999999999 6788999999999999999986 57899999887443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=84.36 E-value=6 Score=36.07 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=60.2
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe---CCCCC---C---C--CCceEEEe
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG---GNMFE---A---I--PPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~---~---~--~~~D~i~~ 264 (365)
.+++.+||-+|+|. |.++..+++...-.+++++|. +.-.+.+++..--.++. .|+.+ . . ..+|+|+-
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid 259 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE 259 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence 56788999999876 778888888764338899987 66666665411111111 11111 1 1 15898876
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.- .. ...++.+.+.|++ ||+++++-...
T Consensus 260 ~~-----G~---~~~~~~~~~~l~~---~G~vv~~G~~~ 287 (370)
T 4ej6_A 260 CA-----GV---AETVKQSTRLAKA---GGTVVILGVLP 287 (370)
T ss_dssp CS-----CC---HHHHHHHHHHEEE---EEEEEECSCCC
T ss_pred CC-----CC---HHHHHHHHHHhcc---CCEEEEEeccC
Confidence 42 21 2467888899999 89998876543
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=84.07 E-value=5.4 Score=34.83 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=50.9
Q ss_pred CeEEEecCCcc--HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHH
Q 017835 202 NTLVDVGGGTG--TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVK 278 (365)
Q Consensus 202 ~~iLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~ 278 (365)
.+|.=||+|.= .++..|.+..++.+++++|. +...+.+.+...+.....|..+.....|+|+++- +......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 57888998863 33445555555678999998 6656555432211112233332334689988854 4445577
Q ss_pred HHHHHHHh-ccc
Q 017835 279 ILKNCKKA-IAI 289 (365)
Q Consensus 279 ~L~~i~~~-L~p 289 (365)
+++++... ++|
T Consensus 82 v~~~l~~~~l~~ 93 (290)
T 3b1f_A 82 FIKILADLDLKE 93 (290)
T ss_dssp HHHHHHTSCCCT
T ss_pred HHHHHHhcCCCC
Confidence 88888888 887
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=84.02 E-value=5.4 Score=36.44 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=60.4
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHHhcccCCCeEEEeC-----CCCC---C-C-CCceEEEe
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHI-ECTVFDQ-PHVVADLKSNGNLKYVGG-----NMFE---A-I-PPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~i~~~~~-----d~~~---~-~-~~~D~i~~ 264 (365)
.+++.+||=+|+|. |.++..+++.. ++ +++++|. +.-.+.+++..--.++.. |+.+ . . ..+|+++-
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid 269 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE 269 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence 56788999999874 77888888875 45 8999996 777777765221112211 1111 0 1 15898876
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCC-cEEEEEeee
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKA-GKVIIIDIK 302 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~g-G~lli~e~~ 302 (365)
.-- . ...++.+.+.|++ | |+++++-..
T Consensus 270 ~~g-----~---~~~~~~~~~~l~~---g~G~iv~~G~~ 297 (378)
T 3uko_A 270 CIG-----N---VSVMRAALECCHK---GWGTSVIVGVA 297 (378)
T ss_dssp CSC-----C---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred CCC-----C---HHHHHHHHHHhhc---cCCEEEEEccc
Confidence 432 2 3457888899999 7 998887653
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=83.93 E-value=0.4 Score=37.24 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=37.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCC-CCCcchHHHHHHHHHhcCceeccc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIH-PTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~-~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+..|+..|....++.|+.+|++.++.. +.+...+.++|+-|...|++.+..
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 334445554312689999999999821 005688999999999999999875
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=83.89 E-value=0.66 Score=36.02 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|+.+||+.+++ +...+.+.|+.|...|++.+..
T Consensus 40 ~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 40 KPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 68999999999999 5789999999999999999863
|
| >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
|---|
Probab=83.79 E-value=1.1 Score=38.12 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=41.5
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+.+..+||+.+++ ++..+.++|+.|...|++.+.. +..+.+|+.++.+
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~ 71 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS------DRSLQMTPTGRTL 71 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSBEEECHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC------CCCeEECHHHHHH
Confidence 4466999999999 6789999999999999999985 5779999998743
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=83.49 E-value=5.6 Score=35.95 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=60.0
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHHhcccCCCeEEEeCC------CCCC-----CCCceEEE
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHI-ECTVFDQ-PHVVADLKSNGNLKYVGGN------MFEA-----IPPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~i~~~~~d------~~~~-----~~~~D~i~ 263 (365)
.+++.+||-+|+|. |.++..+++.. ++ +++++|. +.-.+.+++..--.++..+ +.+. ...+|+++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 56788999999876 78888888876 55 8999987 6666666642111222211 1110 13589887
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
-.-- . ...++.+.+.|+| +|+++++-.
T Consensus 248 d~~g-----~---~~~~~~~~~~l~~---~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECTG-----A---EASIQAGIYATRS---GGTLVLVGL 274 (356)
T ss_dssp ECSC-----C---HHHHHHHHHHSCT---TCEEEECSC
T ss_pred ECCC-----C---hHHHHHHHHHhcC---CCEEEEEec
Confidence 6432 1 2357788889999 899988754
|
| >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.19 E-value=0.88 Score=34.45 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=42.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
.-.|.+.+.. .|.++.+|++.+++ ++..+..+|+.|...|.+.... ++.|.++.
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~------~~~~~~~~ 62 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV------KDRYYRND 62 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec------CCceECHH
Confidence 3445566653 57799999999999 6788999999999999999876 46665443
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=83.17 E-value=1 Score=33.82 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=47.0
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcC--------CCCCCc-chHHHHHHHHHhcCceeccccCCCC-ccceEecCccchh
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQ--------IHPTKT-QCVYHLMRILVHSGFFALQKTSENE-QEEGYILTSASKL 109 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~--------~~~~~~-~~l~~lL~~L~~~g~l~~~~~~~~~-~~~~y~~t~~~~~ 109 (365)
.++-|+..|.. +|.+.-+|++.++ + ++ ..+.+.|+-|...|+++......++ ....|++|+.++.
T Consensus 14 ~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~ 88 (118)
T 2esh_A 14 LASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKL 88 (118)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHH
Confidence 34444455554 6899999999883 4 67 8899999999999999876421111 0135999999974
Q ss_pred hh
Q 017835 110 LL 111 (365)
Q Consensus 110 l~ 111 (365)
+.
T Consensus 89 ~l 90 (118)
T 2esh_A 89 YL 90 (118)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=82.66 E-value=0.96 Score=34.65 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
...|..+||+++++ ++..+.+.|+.|...|++....
T Consensus 50 ~~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 50 LFPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SSCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34799999999999 6799999999999999999864
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=82.55 E-value=6.7 Score=31.86 Aligned_cols=89 Identities=16% Similarity=0.060 Sum_probs=56.0
Q ss_pred ccCCCeEEEecC--CccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC---------C--CCceEEE
Q 017835 198 FEGLNTLVDVGG--GTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA---------I--PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~---------~--~~~D~i~ 263 (365)
.+++.+||.+|+ |.|..+..++... +.+++++|. ++..+.+++..--... |..++ . ..+|+++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~D~vi 112 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVG--DSRSVDFADEILELTDGYGVDVVL 112 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEE--ETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEe--eCCcHHHHHHHHHHhCCCCCeEEE
Confidence 567889999994 5677777666654 568999887 5555555432111111 22221 1 1488887
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+. .. ..++.+.+.|+| ||+++++-.
T Consensus 113 ~~~-----g~----~~~~~~~~~l~~---~G~~v~~g~ 138 (198)
T 1pqw_A 113 NSL-----AG----EAIQRGVQILAP---GGRFIELGK 138 (198)
T ss_dssp ECC-----CT----HHHHHHHHTEEE---EEEEEECSC
T ss_pred ECC-----ch----HHHHHHHHHhcc---CCEEEEEcC
Confidence 543 11 357788899999 899888754
|
| >2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2 | Back alignment and structure |
|---|
Probab=82.50 E-value=1.2 Score=36.85 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+|.+..+||+.+++ .+..++..++-|...|+++.. .+..++|+.++.+
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~-------~~Gv~LTe~G~~~ 76 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSK-------QRGHFLTLKGKEI 76 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEe-------CCCeEECHHHHHH
Confidence 58999999999999 579999999999999999987 4789999988743
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=82.26 E-value=5.2 Score=36.83 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=62.9
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHHhcccCCCeEEEeC---CC-CCC-----CC-CceEEEe
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHI-ECTVFDQ-PHVVADLKSNGNLKYVGG---NM-FEA-----IP-PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~i~~~~~---d~-~~~-----~~-~~D~i~~ 264 (365)
.+++.+||-+|+|. |.++..+++.. ++ +++++|. +...+.+++.. ..++.. |+ .+. .. .+|+|+-
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid 260 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEVDCGVD 260 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCCCEEEE
Confidence 67789999999887 88888888876 45 8999997 66677776522 233322 21 110 01 5899876
Q ss_pred cccccc---------CChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 265 KCVLHN---------WNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 265 ~~vlh~---------~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.---.. .+. ...++.+.+.|+| ||+++++-..
T Consensus 261 ~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 261 AVGFEAHGLGDEANTETP---NGALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp CSCTTCBCSGGGTTSBCT---THHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCCcccccccccccccc---HHHHHHHHHHHhc---CCEEEEeccc
Confidence 532210 011 2357888899999 8998876543
|
| >1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 | Back alignment and structure |
|---|
Probab=82.20 E-value=1.2 Score=30.72 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+.+++.++|+.+++. ..+.++.++.+|.+.|++++.+
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 679999999999993 2589999999999999999975
|
| >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=82.17 E-value=0.4 Score=37.97 Aligned_cols=60 Identities=15% Similarity=0.315 Sum_probs=43.9
Q ss_pred HHcCcccccccCC-CCCCHHHHHHHc-----CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 40 IQLGIPDIIHNHA-KPMTLNQLLTTL-----QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 40 ~~lglf~~L~~~~-~~~t~~~la~~~-----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
.+.-|++.|...+ .+.|++||.+.+ ++ +..-++|.|+.|+..|++.+.... ++ ..+|.++
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~-~~-~~~Y~~~ 83 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHHFE-GG-KSVFELS 83 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEECG-GG-CEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEEeC-CC-ceEEEec
Confidence 3455677776544 689999999988 44 567899999999999999986421 11 2457653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=82.12 E-value=2.7 Score=37.93 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=59.8
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCC-CceEEEeccccccCChh
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIP-PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~-~~D~i~~~~vlh~~~~~ 274 (365)
.+++.+||-+|+|. |.++..+++.. ++++++++. +.-.+.+++..--.++ .+. +... .+|+|+-.-- .+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~-~~~~~~~D~vid~~g-----~~ 245 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY-TDP-KQCKEELDFIISTIP-----TH 245 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE-SSG-GGCCSCEEEEEECCC-----SC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec-CCH-HHHhcCCCEEEECCC-----cH
Confidence 67788999999876 78888888876 569999986 6666666652211122 221 1222 6898875322 11
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..++.+.+.|+| +|+++++-.
T Consensus 246 ---~~~~~~~~~l~~---~G~iv~~G~ 266 (348)
T 3two_A 246 ---YDLKDYLKLLTY---NGDLALVGL 266 (348)
T ss_dssp ---CCHHHHHTTEEE---EEEEEECCC
T ss_pred ---HHHHHHHHHHhc---CCEEEEECC
Confidence 246778889999 899998754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=82.02 E-value=6.4 Score=35.04 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=53.4
Q ss_pred CCeEEEecCCcc--HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCCCceEEEeccccccCChhHH
Q 017835 201 LNTLVDVGGGTG--TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 201 ~~~iLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
..+|.=||+|.= .++..|.+.....+++++|. +..++.+.+..-+.....|..+ ....+|+|+++- +....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 368999998753 34444555433238999998 6666666543322222334433 345789998864 44456
Q ss_pred HHHHHHHHHhccc
Q 017835 277 VKILKNCKKAIAI 289 (365)
Q Consensus 277 ~~~L~~i~~~L~p 289 (365)
.++++++...++|
T Consensus 108 ~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 108 REIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHhhccCC
Confidence 7889999999998
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=81.99 E-value=1.4 Score=32.24 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=35.8
Q ss_pred CcccccccCCCCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|+..|.. ++.+ |..+||+.+|+ ...-+++-|+.|...|++....
T Consensus 32 ~I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 33444553 2445 99999999999 5788999999999999999764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=81.90 E-value=12 Score=28.06 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEecccccc
Q 017835 201 LNTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHN 270 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~ 270 (365)
..+|+=+|+| ..+..+++.+ .+.+++++|. +...+.+.....+.++.+|..++ ...+|+++..-
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 3578888875 4444443332 3568999998 65555554323566777777542 34689887763
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+++.....+..+.+.+++ +++++
T Consensus 78 -~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred -CCchHHHHHHHHHHHcCC----CEEEE
Confidence 223333445556666776 45554
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=81.76 E-value=1 Score=32.27 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.+++..+|++++++ +..-+.+.|+.|...|++.+..
T Consensus 35 ~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 35 KGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp TCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 48999999999999 5788999999999999999653
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=81.29 E-value=1.3 Score=33.33 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=46.0
Q ss_pred HHcCcccccccCCCCCCHHHHHHHc------CCCCCCcchHHHHHHHHHhcCceeccccC-CCC-ccceEecCccchhh
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTL------QIHPTKTQCVYHLMRILVHSGFFALQKTS-ENE-QEEGYILTSASKLL 110 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~------~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~-~~~~y~~t~~~~~l 110 (365)
+++=|+..|.. +|.+.-+|++.+ ++ ++..+...|+-|...|+++..... +++ ....|++|+.++..
T Consensus 12 l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~ 85 (117)
T 4esf_A 12 LEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQE 85 (117)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHH
Confidence 33334445554 789999999887 55 678999999999999999976321 111 11349999999743
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=80.92 E-value=14 Score=28.15 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccC
Q 017835 201 LNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNW 271 (365)
Q Consensus 201 ~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~ 271 (365)
..+|+=+|||. |......+.. .+.+++++|. ++.++.+++ ..+.++.+|..++ ...+|++++.--
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----
Confidence 35788888865 3333333333 3678999998 777777764 5778889998773 125888876431
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
++.....+.. ..+.+.| +.+++.
T Consensus 81 ~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp CHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred ChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 2233333333 4455666 565554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=80.11 E-value=18 Score=30.94 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred CeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCCCceEEEeccccccCChhHHH
Q 017835 202 NTLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIPPADAVLIKCVLHNWNDEECV 277 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~ 277 (365)
++||=.| + |..+..+++.+ .+.++++++. +....... ..+++++.+|+.+ ...++|+|+.........++...
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 5789898 4 88888777764 2568888887 43333332 3679999999876 34468888776554433344444
Q ss_pred HHHHHHHHhcccCCCCcEEEEEee
Q 017835 278 KILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 278 ~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+++.+.+.-.. -.+++.+..
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~Ss 103 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYLST 103 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEEEE
T ss_pred HHHHHHHhhcCC---ceEEEEeec
Confidence 555555443122 256666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 365 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 5e-90 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 1e-79 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 4e-66 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 7e-37 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 7e-35 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 5e-34 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 2e-26 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 6e-26 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 3e-16 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 4e-16 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 8e-05 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.001 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.001 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.002 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.002 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 268 bits (686), Expect = 5e-90
Identities = 121/250 (48%), Positives = 169/250 (67%), Gaps = 6/250 (2%)
Query: 116 LSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFF 175
L LAP + +LDP L+ +H++ WI +D T F + G FWD+ + N F
Sbjct: 1 LCLAPMVECVLDPTLSGSYHELKKWIYEED----LTLFGVTLGSGFWDFLDKNPEYNTSF 56
Query: 176 NEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHV 235
N+ MASD++L + AL C VF+GL ++VDVGGGTGT A I + FP ++C VFD+P V
Sbjct: 57 NDAMASDSKLINLALRD-CDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV 115
Query: 236 VADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGK 295
V +L + NL YVGG+MF +IP ADAVL+K +LHNW D++C++ILK CK+A+ +GK GK
Sbjct: 116 VENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGK 175
Query: 296 VIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVL 355
V IID+ ++ +K + + T+ +L MD+ M L G+ERNE+EW KLF EAGF YKI+ +
Sbjct: 176 VTIIDMVIDKKKDENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKISPLT 234
Query: 356 GVRSLIEVYP 365
G SLIE+YP
Sbjct: 235 GFLSLIEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 241 bits (617), Expect = 1e-79
Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 9/249 (3%)
Query: 117 SLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFN 176
LA F + P L + W + ++D F HG+ +++ ++ ++N FN
Sbjct: 3 YLASFTTFLCYPALLQVWMNFKEAVVDED----IDLFKNVHGVTKYEFMGKDKKMNQIFN 58
Query: 177 EGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVV 236
+ M ++ FEG++TLVDVGGG+G I K+P I+ FD P V+
Sbjct: 59 KSMVDVCATEMKRMLE-IYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVI 117
Query: 237 ADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKV 296
+ +++VGG+MF ++P DA+++K V HNW+DE+C++ L NC KA+ GKV
Sbjct: 118 ENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKV 174
Query: 297 IIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD-VL 355
II++ + E + ++ +D LM + V G ER EK++ KL +GFS +++
Sbjct: 175 IIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAF 234
Query: 356 GVRSLIEVY 364
++E Y
Sbjct: 235 NSLGVMEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 207 bits (527), Expect = 4e-66
Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 10/249 (4%)
Query: 115 PLSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHF 174
+S++ L D +L + W+ + + + F +GM ++Y + R N
Sbjct: 2 GVSISALNLMNQDKVLMESWYHLKDAVLDG-----GIPFNKAYGMTAFEYHGTDPRFNKV 56
Query: 175 FNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPH 234
FN+GM+ + +T ++ FEGL +LVDVGGGTG + + I K+P I+ FD PH
Sbjct: 57 FNKGMSDHSTITMKKILE-TYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH 115
Query: 235 VVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAG 294
V+ D S +++VGG+MF +IP ADAV +K + H+W+DE C+K LKNC +A+ G
Sbjct: 116 VIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEAL---PDNG 172
Query: 295 KVIIIDIKMESEKADYKTTETQLFMDMLMMVLVK-GEERNEKEWAKLFFEAGFSDYKITD 353
KVI+ + + T+ + +D++M+ G+ER +KE+ L AGF +K+
Sbjct: 173 KVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHC 232
Query: 354 VLGVRSLIE 362
++E
Sbjct: 233 NAFNTYIME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 132 bits (331), Expect = 7e-37
Identities = 54/266 (20%), Positives = 97/266 (36%), Gaps = 26/266 (9%)
Query: 114 HPLSLAPFL-LAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLN 172
HP +L L + + ++ +A +G FW+ + L
Sbjct: 1 HPAQQRAWLDLNGAVSHADLAFTGLLDVVRTG-----RPAYAGRYGRPFWEDLSADVALA 55
Query: 173 HFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ 232
F+ M+ D L A + + ++DVGGG G + +AIA + PH+ T+ +
Sbjct: 56 DSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL 113
Query: 233 PHVVADLK--------SNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKILKNCK 284
+ ++ G AD VL+ VL NW+DE+ + IL+ C
Sbjct: 114 AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCV 173
Query: 285 KAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEA 344
+A+ G+++++D D +D+ M+ + G R E L A
Sbjct: 174 RALE---PGGRLLVLDRADVEG--DGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA 228
Query: 345 GFSDYKITDVLGVR-----SLIEVYP 365
G + S++E
Sbjct: 229 GLALASERTSGSTTLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 126 bits (316), Expect = 7e-35
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 30/260 (11%)
Query: 128 PILTKPWHQVSTWIQNDDD-----DDAATT----FALPHGMNFWDYAVRETRLNHFFNEG 178
P + WH ++ + D DA T + +G F++ L F+
Sbjct: 1 PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSL 60
Query: 179 MASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVAD 238
+A D + A + + ++DVGGG G A+AIA++ PH+ TV + V
Sbjct: 61 LACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDT 118
Query: 239 LKSNGNLKYVGGNMF--------EAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAIN 290
+S + + + ADA+++ VL NW D + V+IL C +A+
Sbjct: 119 ARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE-- 176
Query: 291 GKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYK 350
G+++I + E + E +D+ M+V + G R ++W L AG +
Sbjct: 177 -PGGRILIHERDDLHENS---FNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 232
Query: 351 ITDVLG-----VRSLIEVYP 365
+ + SL+ + P
Sbjct: 233 VRQLPSPTIPYDLSLLVLAP 252
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 119 bits (299), Expect = 5e-34
Identities = 42/101 (41%), Positives = 70/101 (69%), Gaps = 4/101 (3%)
Query: 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQ 72
E+ ++QA ++ +I++F++SMSLK A+++ IP+II NH KP++L+ L++ LQ+ +K
Sbjct: 3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIG 62
Query: 73 CVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLKD 113
V LMR L H+GFF + ++EE Y LT AS+LL++
Sbjct: 63 NVRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRG 99
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 99.5 bits (248), Expect = 2e-26
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 28 FSFVNSMSLKCAIQLGIPDIIHNHAKP---MTLNQLLTTLQI---HPTKTQCVYHLMRIL 81
+ V L AI L + +II P M+ +++ + L H + ++R+L
Sbjct: 15 TNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLL 74
Query: 82 VHSGFFA--LQKTSENEQEEGYILTSASKLLLKDH 114
+ + E Y L+ K L+ D
Sbjct: 75 ASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 109
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 98.0 bits (244), Expect = 6e-26
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 12 ISDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQI---HP 68
ISDE A + V M LK A++L + +II ++ + Q+ +P
Sbjct: 2 ISDEEANLFAMQL--ASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNP 59
Query: 69 TKTQCVYHLMRILVHSGFFA--LQKTSENEQEEGYILTSASKLLLKD 113
+ ++R+L ++ + + + Y L + +K L+K+
Sbjct: 60 DAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN 106
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 70.9 bits (174), Expect = 3e-16
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHL 77
Q + N+ + V M+L+ A L + D + A TL L HP Q + L
Sbjct: 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHP---QALSRL 60
Query: 78 MRILVHSGFFALQKTSENEQEEGYILTSASKLL 110
+R L G + +Q T LL
Sbjct: 61 VRHLTVVGVLEGGE----KQGRPLRPTRLGMLL 89
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 70.6 bits (173), Expect = 4e-16
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 29 SFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFA 88
S M ++ A L + D H A T+ L P + + L+R LV G
Sbjct: 11 SLHTPMVVRTAATLRLVD--HILAGARTVKALAARTDTRP---EALLRLIRHLVAIGLLE 65
Query: 89 LQKTSENEQEEG-YILTSASKLLLKDH 114
E G ++ T +LL DH
Sbjct: 66 -------EDAPGEFVPTEVGELLADDH 85
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 20/161 (12%), Positives = 51/161 (31%), Gaps = 21/161 (13%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHI--------ECTVFDQPHVVADLKSNGNLKYVGGNMFE 254
++D+G G G A A + V +++ + ++
Sbjct: 19 RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78
Query: 255 AIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTE 314
D + + H+++D K ++ + + + G+ +++D +
Sbjct: 79 PDDSFDIITCRYAAHHFSDVR--KAVREVARVLK---QDGRFLLVDHYAPEDPV------ 127
Query: 315 TQLFMDMLMMVLVKGEER--NEKEWAKLFFEAGFSDYKITD 353
F++ L + R + EW +F + I
Sbjct: 128 LDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 168
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 41.8 bits (97), Expect = 8e-05
Identities = 27/184 (14%), Positives = 54/184 (29%), Gaps = 25/184 (13%)
Query: 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPH------IECTVFDQPHVVADLKS 241
S L++ + + ++ + D G G G L + P I+ +
Sbjct: 16 SFLVNTVWKITKPVHIV-DYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 74
Query: 242 NGNLKYVGGNMFEAIPPAD---AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298
I D + L + E +L+ ++ K GK+I
Sbjct: 75 LPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPE--TMLQKMIHSVK---KGGKIIC 129
Query: 299 IDIKMESEKADY----KTTETQLFMDMLMMVLVKGEERNEK------EWAKLFFEAGFSD 348
+ S A Y + + + +L + +RN K + E G +
Sbjct: 130 FEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKN 189
Query: 349 YKIT 352
+
Sbjct: 190 IECR 193
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 37.8 bits (87), Expect = 0.001
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 11/111 (9%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFD-QPHVVADLKSN----GNLKYVGGNMFEAIP 257
++ +G +GT S +A + L N+ + + +
Sbjct: 59 RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWK 118
Query: 258 PADAV-LIKCVLHN-WNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306
+ V + + + + + N + + K ++I +K S
Sbjct: 119 YSGIVEKVDLIYQDIAQKNQIEILKANAEFFL----KEKGEVVIMVKARSI 165
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 37.3 bits (85), Expect = 0.001
Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 17/158 (10%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHI------ECTVFDQPHVVADLKSNGNLKYVGGNMFEAI 256
++DV G G +A+A A + E + + G
Sbjct: 18 EVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 77
Query: 257 PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQ 316
++ C + + + + + G+++++D A
Sbjct: 78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG---GQLLLVDNSAPENDA------FD 128
Query: 317 LFMDMLMMVLVKGEER--NEKEWAKLFFEAGFSDYKIT 352
+F + + R + +W K+ EAGF ++
Sbjct: 129 VFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELH 166
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.0 bits (85), Expect = 0.002
Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 25/159 (15%)
Query: 203 TLVDVGGGTGTLASAIAKKFPHIECTVFD-QPHVVADLKSN----GNLKYVGGNMFEAIP 257
++ +G GT S +A + P ++ +L N+ + G+ +
Sbjct: 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE 136
Query: 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQL 317
A+ V V + D + K K G +I IK S
Sbjct: 137 YANIVE--KVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDV--------- 185
Query: 318 FMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLG 356
K + KE ++ GF D+
Sbjct: 186 ---------TKDPKEIFKEQKEILEAGGFKIVDEVDIEP 215
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 36.9 bits (84), Expect = 0.002
Identities = 15/114 (13%), Positives = 32/114 (28%), Gaps = 9/114 (7%)
Query: 186 TSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNL 245
T S ++ K V G +D+G G G + +A + + + +
Sbjct: 18 THSDVLAAAKVVAPG--RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAE 75
Query: 246 KYVGGNM-------FEAIPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGK 292
D +L V+ + ++ N ++ G
Sbjct: 76 GLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGY 129
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.8 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.8 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.78 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.76 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.7 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.69 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.66 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.64 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.64 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.64 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.63 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.6 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.6 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.55 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.52 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.51 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.51 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.48 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.47 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.46 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.46 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.46 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.45 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.45 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.43 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.43 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.4 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.36 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.35 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.32 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.31 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.31 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.31 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.3 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.28 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.27 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.27 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.19 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.17 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.16 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.1 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.07 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.06 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.99 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.95 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.9 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.9 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.9 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.83 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.76 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.54 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.51 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.47 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.41 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.4 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.39 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.34 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.34 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.33 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.28 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.22 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.2 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.19 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.19 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.18 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.17 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.17 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.16 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.15 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.13 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.11 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.07 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.07 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.99 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.92 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.9 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.88 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.78 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.7 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.66 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.56 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.4 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.36 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.28 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.24 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.19 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.97 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.8 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.72 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.55 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.29 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.24 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.17 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 96.14 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 95.98 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 95.89 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.85 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.65 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.43 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 95.39 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 95.38 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.15 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 95.1 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.06 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 94.97 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.94 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 94.7 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 94.56 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 94.45 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 94.38 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.36 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 94.35 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.29 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.23 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 94.16 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 94.03 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 94.02 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 93.97 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.96 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 93.95 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 93.94 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 93.69 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.63 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 93.47 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 93.24 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 93.18 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.11 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.97 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.88 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 92.75 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 92.65 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 92.63 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 92.61 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.25 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 92.18 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 92.15 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.06 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.99 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 91.87 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.76 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 91.59 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 91.26 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 91.26 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 91.19 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 90.97 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 90.83 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 90.64 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.61 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 90.5 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 90.47 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 90.4 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 90.24 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 90.0 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.97 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 89.85 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 89.71 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 89.69 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 89.66 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 89.48 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 89.36 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 88.86 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 88.38 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 88.1 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 87.64 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 87.45 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 87.41 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 87.33 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.84 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 86.77 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 86.63 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 86.41 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 85.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 85.7 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.56 | |
| d2zcwa1 | 82 | Transcriptional regulator TTHA1359, C-terminal dom | 84.63 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 84.56 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 84.48 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 84.34 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 84.1 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 83.71 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 82.78 | |
| d1stza1 | 87 | Heat-inducible transcription repressor HrcA, N-ter | 82.77 | |
| d1ft9a1 | 80 | CO-sensing protein CooA, C-terminal domain {Rhodos | 82.58 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 82.42 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 81.08 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 81.0 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 80.47 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 80.26 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 80.02 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.2e-43 Score=311.61 Aligned_cols=241 Identities=32% Similarity=0.604 Sum_probs=206.6
Q ss_pred ChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccc
Q 017835 117 SLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKD 196 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 196 (365)
+++.++.+++.|.+++.|.+|+++++++. +++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.++
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~----~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~- 77 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDED----IDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT- 77 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCC----CCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 68889999888989999999999999987 4789999999999999999999999999999988888888888887
Q ss_pred cccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHH
Q 017835 197 VFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 197 ~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
.+++..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|+++++
T Consensus 78 ~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~ 157 (244)
T d1fp1d2 78 GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKC 157 (244)
T ss_dssp TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHH
T ss_pred cccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHH
Confidence 35888999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc-C
Q 017835 277 VKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV-L 355 (365)
Q Consensus 277 ~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~ 355 (365)
.++|++++++|+| ||+|+|.|.+.++.............+|+.|+...+|++||.+||.++|++|||+.+++++. .
T Consensus 158 ~~iL~~~~~aL~p---gg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~ 234 (244)
T d1fp1d2 158 IEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAF 234 (244)
T ss_dssp HHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEET
T ss_pred HHHHHHHHHHcCC---CcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCC
Confidence 9999999999999 99999999999876654322234467788888778999999999999999999999999766 5
Q ss_pred CceeEEEEeC
Q 017835 356 GVRSLIEVYP 365 (365)
Q Consensus 356 ~~~~vi~~~~ 365 (365)
+..+|||++|
T Consensus 235 ~~~~viE~~K 244 (244)
T d1fp1d2 235 NSLGVMEFYK 244 (244)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEeC
Confidence 6799999997
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=9.6e-43 Score=306.00 Aligned_cols=240 Identities=49% Similarity=0.938 Sum_probs=213.2
Q ss_pred ChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccc
Q 017835 117 SLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKD 196 (365)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 196 (365)
++++++.++.+|.++..|..|++.++++. +++|+.++|.++|+|+.++|+..+.|+++|...+......+.+ ..+
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~----~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~ 76 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEED----LTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDF 76 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSS----CCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHH
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCC----CCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hcc
Confidence 57888888888989999999999999986 4899999999999999999999999999999887665554443 322
Q ss_pred cccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHH
Q 017835 197 VFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEEC 276 (365)
Q Consensus 197 ~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~ 276 (365)
.+++..+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|+++++|++|+|+++++||+|+|+++
T Consensus 77 ~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~ 156 (244)
T d1fp2a2 77 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDC 156 (244)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHH
T ss_pred cccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHH
Confidence 36788999999999999999999999999999999999999998899999999999999899999999999999999999
Q ss_pred HHHHHHHHHhcccCCCC---cEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 277 VKILKNCKKAIAINGKA---GKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 277 ~~~L~~i~~~L~p~~~g---G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
.++|++++++|+| | |+++|+|.+.++.............++++|+. .+|++||.+||+++|+++||+.+++++
T Consensus 157 ~~iL~~~~~al~p---gg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~ 232 (244)
T d1fp2a2 157 LRILKKCKEAVTN---DGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISP 232 (244)
T ss_dssp HHHHHHHHHHHSG---GGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHcCc---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999999 7 89999999998776543222334466776664 689999999999999999999999999
Q ss_pred cCCceeEEEEeC
Q 017835 354 VLGVRSLIEVYP 365 (365)
Q Consensus 354 ~~~~~~vi~~~~ 365 (365)
.++..+|||++|
T Consensus 233 ~~~~~svIE~~p 244 (244)
T d1fp2a2 233 LTGFLSLIEIYP 244 (244)
T ss_dssp EETTEEEEEEEC
T ss_pred CCCCeEEEEEeC
Confidence 999999999998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=2.8e-41 Score=297.34 Aligned_cols=240 Identities=34% Similarity=0.617 Sum_probs=217.0
Q ss_pred CChHHHHHHccCcccccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhcc
Q 017835 116 LSLAPFLLAMLDPILTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCK 195 (365)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~ 195 (365)
.|+.+++.+..++.+++.|.+|++++|+|+ ++|+..+|.++|+|+.++|+..+.|+++|...+......+++.++
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-----~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~ 77 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGG-----IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYT 77 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-----CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-----CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcc
Confidence 378999988878888999999999999998 899999999999999999999999999999888777788888887
Q ss_pred ccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhH
Q 017835 196 DVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEE 275 (365)
Q Consensus 196 ~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~ 275 (365)
+ .++..+|||||||+|.++..+++++|+++++++|+|.+++.+...+|++++.+|+++++|.+|+|++.+++|+|++++
T Consensus 78 ~-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~ 156 (243)
T d1kyza2 78 G-FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEH 156 (243)
T ss_dssp T-TSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHH
T ss_pred c-ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHH
Confidence 3 466789999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc-CccccCHHHHHHHHHhcCCccceEEEc
Q 017835 276 CVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV-KGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 276 ~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
+.++|++++++|+| ||+++|+|.+.++.............+|+.|+..+ +|++||.+||+++|++|||+.+++++.
T Consensus 157 ~~~iL~~~~~al~p---gg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~ 233 (243)
T d1kyza2 157 CLKFLKNCYEALPD---NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCN 233 (243)
T ss_dssp HHHHHHHHHHHCCS---SSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEE
T ss_pred HHHHHHHHHHhcCC---CceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEe
Confidence 99999999999999 99999999998876554322334457888888764 899999999999999999999999999
Q ss_pred CCceeEEEEe
Q 017835 355 LGVRSLIEVY 364 (365)
Q Consensus 355 ~~~~~vi~~~ 364 (365)
+...+|||+.
T Consensus 234 ~~~~~viE~~ 243 (243)
T d1kyza2 234 AFNTYIMEFL 243 (243)
T ss_dssp ETTEEEEEEC
T ss_pred CCCCEEEEeC
Confidence 9899999963
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=1.3e-38 Score=282.77 Aligned_cols=239 Identities=22% Similarity=0.366 Sum_probs=204.6
Q ss_pred CCChHHHHHHccCcc-cccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhh
Q 017835 115 PLSLAPFLLAMLDPI-LTKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHK 193 (365)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 193 (365)
|.++.+|+.+..... ...+|.+|.+++|+|. ++|+..+|.++|+|+.++|+..+.|+++|...+......+++.
T Consensus 2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-----~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~ 76 (256)
T d1qzza2 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-----PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADA 76 (256)
T ss_dssp TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-----CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHT
T ss_pred cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-----chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 557787776542211 2347899999999997 6899999999999999999999999999999888888889999
Q ss_pred ccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCCCCC-CceEEEec
Q 017835 194 CKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFEAIP-PADAVLIK 265 (365)
Q Consensus 194 ~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~~~-~~D~i~~~ 265 (365)
++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|++++.+|+++++| +||+|++.
T Consensus 77 ~d--~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~ 154 (256)
T d1qzza2 77 YD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS 154 (256)
T ss_dssp SC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred CC--CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcc
Confidence 99 88899999999999999999999999999999999988887764 6899999999999877 59999999
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
++||+|+++++.++|++++++|+| ||+|+|+|.+.++..... ......+|+.|+...+|+.||.+||+++|+++|
T Consensus 155 ~vLh~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AG 229 (256)
T d1qzza2 155 FVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAG 229 (256)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTT
T ss_pred ccccccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCCCccc--HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCC
Confidence 999999999999999999999999 999999998766543321 134567888888888999999999999999999
Q ss_pred CccceEEEcCC-----ceeEEEEeC
Q 017835 346 FSDYKITDVLG-----VRSLIEVYP 365 (365)
Q Consensus 346 f~~~~~~~~~~-----~~~vi~~~~ 365 (365)
|+++++++.+. ..+|||++|
T Consensus 230 f~~~~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 230 LALASERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CceeEEEEeCCcCccCceEEEEEEe
Confidence 99999988743 369999875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=4.7e-37 Score=272.62 Aligned_cols=222 Identities=27% Similarity=0.472 Sum_probs=197.1
Q ss_pred ccchhhHHHHhhcCCCCCCCCccccccCCChhHHHhhCchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCC
Q 017835 131 TKPWHQVSTWIQNDDDDDAATTFALPHGMNFWDYAVRETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGG 210 (365)
Q Consensus 131 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G 210 (365)
..+|.+|++++|+|+ ++|+.++|+++|+|+.++|+....|.++|...+......+++.++ +.+..+|||||||
T Consensus 18 ~~~~~~L~~~vr~G~-----~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG 90 (253)
T d1tw3a2 18 DISFTRLPDAIRTGR-----PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGG 90 (253)
T ss_dssp GGGGGGHHHHHHHCC-----CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCT
T ss_pred cccHHHHHHHHHhCC-----chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCC
Confidence 457899999999997 789999999999999999999999999999988888889999999 8889999999999
Q ss_pred ccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCCCCC-CceEEEeccccccCChhHHHHHHHH
Q 017835 211 TGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFEAIP-PADAVLIKCVLHNWNDEECVKILKN 282 (365)
Q Consensus 211 ~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~~~-~~D~i~~~~vlh~~~~~~~~~~L~~ 282 (365)
+|.++..+++++|+++++++|++++++.+++ .+|++++.+|++++.| +||+|+++++||||+++++.++|++
T Consensus 91 ~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~ 170 (253)
T d1tw3a2 91 KGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTR 170 (253)
T ss_dssp TSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHH
Confidence 9999999999999999999999888887764 5799999999998766 5999999999999999999999999
Q ss_pred HHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEcCC-----c
Q 017835 283 CKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDVLG-----V 357 (365)
Q Consensus 283 i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-----~ 357 (365)
++++||| ||+|+|.|.......... .....+|+.|+...+|+.||.++|+++|+++||++++++.++. .
T Consensus 171 ~~~~LkP---GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~ 244 (253)
T d1tw3a2 171 CAEALEP---GGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYD 244 (253)
T ss_dssp HHHTEEE---EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCE
T ss_pred HHHhcCC---CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCcc
Confidence 9999999 999999998776554432 3445778888877899999999999999999999999887743 2
Q ss_pred eeEEEEeC
Q 017835 358 RSLIEVYP 365 (365)
Q Consensus 358 ~~vi~~~~ 365 (365)
..+|+..|
T Consensus 245 ~~li~~~P 252 (253)
T d1tw3a2 245 LSLLVLAP 252 (253)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 56777765
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=5.2e-20 Score=159.13 Aligned_cols=164 Identities=10% Similarity=0.070 Sum_probs=122.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK--FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~~D~i~~~~ 266 (365)
.+++.+|||||||+|..+..|++. .|+++++++|+ +.|++.|++ ..++++..+|+.+ +.+.+|++++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 467789999999999999999986 48899999999 999999874 4577888888876 556799999999
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhcc--------------Ccccc
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLV--------------KGEER 332 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------~~~~~ 332 (365)
++|+++.++..++|++++++|+| ||.+++.|...+........ ....+..+...... .-...
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred eccccChhhHHHHHHHHHHhCCC---CceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 99999988888999999999999 99999999887665421100 00111111110000 01235
Q ss_pred CHHHHHHHHHhcCCccceEEEcCCceeEEEEeC
Q 017835 333 NEKEWAKLFFEAGFSDYKITDVLGVRSLIEVYP 365 (365)
Q Consensus 333 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 365 (365)
+.+++.++|+++||+.++++--......+.|+|
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 889999999999999888864433344455543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.83 E-value=4.6e-20 Score=159.92 Aligned_cols=151 Identities=17% Similarity=0.346 Sum_probs=117.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-- 257 (365)
..+++..+ ++++.+|||||||+|.++..+++.. .+++++|+ +.+++.|++ .++++++++|+.+ +++
T Consensus 5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 34555566 7889999999999999999999885 58999999 888888764 5789999999987 655
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhh--ccCccccCHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMV--LVKGEERNEK 335 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~ 335 (365)
.||+|++..++||++++ .++|++++++|+| ||++++.++..+.... ....++..... ..+.+.++.+
T Consensus 81 ~fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 149 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKS 149 (231)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred ccccccccccccccCCH--HHHHHHHHHhcCC---CcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHH
Confidence 49999999999999987 6789999999999 9999999987655321 11122221111 1234566899
Q ss_pred HHHHHHHhcCCccceEEE
Q 017835 336 EWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 336 e~~~ll~~aGf~~~~~~~ 353 (365)
+|.++|+++||+++++..
T Consensus 150 ~~~~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 150 DWLKMLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEE
Confidence 999999999999877654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.82 E-value=7.8e-20 Score=163.49 Aligned_cols=152 Identities=17% Similarity=0.220 Sum_probs=119.4
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~- 257 (365)
..+....+ ++++.+|||||||+|.++..|++++ +++++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 57 ~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 57 SELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence 44444455 7889999999999999999999875 679999999 888887774 5799999999988 665
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.||+|++..++||+++. .++|++++++||| ||++++.++...+..... ....+.+... .....+.++
T Consensus 134 ~sfD~V~~~~~l~h~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~s~~~ 201 (282)
T d2o57a1 134 NSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRIK----LHDMGSLGL 201 (282)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHHT----CSSCCCHHH
T ss_pred cccchhhccchhhhccCH--HHHHHHHHHhcCC---CcEEEEEEeecCCCCchh---HHHHHHHHhc----cCCCCCHHH
Confidence 49999999999999987 6799999999999 999999998876543321 1111111111 123348899
Q ss_pred HHHHHHhcCCccceEEEc
Q 017835 337 WAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~~ 354 (365)
+.++++++||+.+.+...
T Consensus 202 ~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 202 YRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHcCCceEEEEEC
Confidence 999999999998887765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.80 E-value=3.3e-19 Score=156.65 Aligned_cols=148 Identities=19% Similarity=0.288 Sum_probs=117.7
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCC--Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIP--PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~--~~D 260 (365)
.+++.++ ..+..+|||+|||+|..+..|+..+.. +++++|. +.+++.|++ ..++++.++|+.+ +++ .||
T Consensus 84 ~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 4555565 567889999999999999998877544 8999999 899998875 3568999999977 443 499
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHH
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKL 340 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 340 (365)
+|++..++||+++++..++|++++++|+| ||.++|.+......... .+. ..+...|+.++|+++
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~~---------~d~----~d~~~~rs~~~~~~l 224 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcce---------ecc----cCCceeCCHHHHHHH
Confidence 99999999999999889999999999999 99999988776543221 110 112345799999999
Q ss_pred HHhcCCccceEEEcC
Q 017835 341 FFEAGFSDYKITDVL 355 (365)
Q Consensus 341 l~~aGf~~~~~~~~~ 355 (365)
|+++||++++.....
T Consensus 225 ~~~aGf~ii~~~~q~ 239 (254)
T d1xtpa_ 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHcCCEEEEEEeeC
Confidence 999999998877653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=5.6e-19 Score=153.45 Aligned_cols=150 Identities=19% Similarity=0.330 Sum_probs=118.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--P 258 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~ 258 (365)
.+++.++ ++++.+|||||||+|.++..+++.. .+++++|+ +.+++.|++ .+++.++++|+.+ +++ .
T Consensus 7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 3566677 8999999999999999999999885 58999999 888888764 4689999999988 655 4
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--hccCccccCHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--VLVKGEERNEKE 336 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~t~~e 336 (365)
||+|++.+++||++++ .++|++++++|+| ||++++.+...+.... ...+++.... .....+.++..+
T Consensus 83 fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPV------LDEFVNHLNRLRDPSHVRESSLSE 151 (234)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred cceeeeeceeecccCH--HHHHHHHHHeeCC---CcEEEEEEcCCCCCHH------HHHHHHHHHhhCCCcccccCCHHH
Confidence 9999999999999887 7899999999999 9999999876654321 1112221111 112355668999
Q ss_pred HHHHHHhcCCccceEEE
Q 017835 337 WAKLFFEAGFSDYKITD 353 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~ 353 (365)
|.++++++||.+..+..
T Consensus 152 ~~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 152 WQAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEE
Confidence 99999999998766544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.4e-18 Score=151.94 Aligned_cols=152 Identities=12% Similarity=0.085 Sum_probs=118.0
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-- 257 (365)
..+.+.+. +.++.+|||||||+|.++..+++.++ ++++++|+ +.+++.+++ .++++++.+|+.+..+
T Consensus 23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 33555666 78899999999999999999998875 79999999 888887764 5789999999988433
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHH
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEW 337 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 337 (365)
.||+|++..++||+++. .++|++++++||| ||++++.++......... ........ .......+..++
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkP---GG~l~i~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~ 167 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---EIAQACGV----SSTSDFLTLPGL 167 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---HHHHTTTC----SCGGGSCCHHHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCc---CcEEEEEeccccCCCChH---HHHHHhcc----CCCcccCCHHHH
Confidence 59999999999999987 6899999999999 999999988765543221 11111100 112234588999
Q ss_pred HHHHHhcCCccceEEEc
Q 017835 338 AKLFFEAGFSDYKITDV 354 (365)
Q Consensus 338 ~~ll~~aGf~~~~~~~~ 354 (365)
.++++++||.++.+...
T Consensus 168 ~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 168 VGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHcCCEEEEEEeC
Confidence 99999999998876544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.1e-19 Score=152.00 Aligned_cols=141 Identities=17% Similarity=0.226 Sum_probs=114.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..+..+|||||||+|.++..++..++ .+++++|+ +.+++.|++ ..+++++++|+.+ +++ .||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 45678999999999999999887765 48999999 999998875 3468999999987 443 4999999999
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
+||+++++..++|++++++|+| ||.+++.+....+.... +. ......|+.++|+++|+++||+
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~----------~~----~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVIL----------DD----VDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEE----------ET----TTTEEEEBHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhHHHHHHHhcCC---cceEEEEEccccccccc----------cc----CCceeeCCHHHHHHHHHHcCCE
Confidence 9999999888999999999999 99999998876553211 00 1123446899999999999999
Q ss_pred cceEEEcCC
Q 017835 348 DYKITDVLG 356 (365)
Q Consensus 348 ~~~~~~~~~ 356 (365)
+++.....+
T Consensus 200 ii~~~~q~~ 208 (222)
T d2ex4a1 200 LLAEERQEN 208 (222)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEeCC
Confidence 998877543
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.76 E-value=1.8e-19 Score=133.58 Aligned_cols=98 Identities=43% Similarity=0.773 Sum_probs=87.2
Q ss_pred chHhhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecccc
Q 017835 13 SDELLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKT 92 (365)
Q Consensus 13 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~ 92 (365)
..+.+++...+|++++||+.+++|++|+++||||.|.+.++|+|++|||+++++++.+.+.+.|+||+|++.|+|.++..
T Consensus 3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~ 82 (101)
T d1fp2a1 3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK 82 (101)
T ss_dssp STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC
Confidence 46788999999999999999999999999999999986568999999999999976566789999999999999987542
Q ss_pred CCCCccceEecCccchhhhcCC
Q 017835 93 SENEQEEGYILTSASKLLLKDH 114 (365)
Q Consensus 93 ~~~~~~~~y~~t~~~~~l~~~~ 114 (365)
+ +++|.+|+.|++|++++
T Consensus 83 ~----~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 83 E----EESYALTVASELLVRGS 100 (101)
T ss_dssp S----SEEEEECHHHHTTSTTS
T ss_pred C----CCeEecCHHHHHhhcCC
Confidence 1 57899999999998775
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=4.6e-18 Score=144.78 Aligned_cols=137 Identities=16% Similarity=0.168 Sum_probs=104.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEeccccccCChh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWNDE 274 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~~ 274 (365)
.+..+|||||||+|.++..+. +++++|+ +.+++.+++ .+++++.+|+.+ +.+ .||+|++.++|||++++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc
Confidence 445689999999999987763 4589999 899998885 579999999987 555 49999999999999886
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhh-hhhccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 275 ECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDML-MMVLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 275 ~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
.++|++++++|+| ||++++.++....... .. ...... .....+...+|.++|.++|+++||+++++..
T Consensus 108 --~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 --ERALKEAYRILKK---GGYLIVGIVDRESFLG-----RE-YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp --HHHHHHHHHHEEE---EEEEEEEEECSSSHHH-----HH-HHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred --ccchhhhhhcCCC---CceEEEEecCCcchhH-----Hh-hhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 6899999999999 9999998875432110 00 000100 1111234567999999999999999888765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=1.3e-16 Score=141.47 Aligned_cols=162 Identities=15% Similarity=0.171 Sum_probs=123.0
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++.+. ++++.+|||||||.|.++..+++.+ +++++++|+ +.+++.+++ ..++.+...|..+....|
T Consensus 42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 45677777 8999999999999999999988887 479999999 888877764 467788877765544469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccc----h-hhhhhhhhhhhh-ccCccccC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKT----T-ETQLFMDMLMMV-LVKGEERN 333 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~----~-~~~~~~d~~~~~-~~~~~~~t 333 (365)
|.|++..+++|++++....+|++++++||| ||+++|.+.+..+....... . ......++.... ..+|...+
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS 195 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 195 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence 999999999999988888999999999999 99999988665443211000 0 001112222222 24667789
Q ss_pred HHHHHHHHHhcCCccceEEEcC
Q 017835 334 EKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
.+++.++++++||.+..+...+
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEECH
T ss_pred hHhhhhhHHhhccccceeeecc
Confidence 9999999999999998887653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.69 E-value=1.7e-16 Score=136.61 Aligned_cols=145 Identities=13% Similarity=0.196 Sum_probs=105.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-CCC-CceEEEeccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-AIP-PADAVLIKCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~~-~~D~i~~~~vlh~~~~ 273 (365)
..+.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.++|||+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence 346789999999999999998874 57999999 889998875 5689999999877 334 5999999999999998
Q ss_pred hHHHHHHHHHH-HhcccCCCCcEEEEEeeecCCCccCccchhh----hhhhhhh--hhhccCccccCHHHHHHHHHhcCC
Q 017835 274 EECVKILKNCK-KAIAINGKAGKVIIIDIKMESEKADYKTTET----QLFMDML--MMVLVKGEERNEKEWAKLFFEAGF 346 (365)
Q Consensus 274 ~~~~~~L~~i~-~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~----~~~~d~~--~~~~~~~~~~t~~e~~~ll~~aGf 346 (365)
+ ..+|++++ ++|+| ||.+++.-+........ .... .....+. -......+.++.++++++++++||
T Consensus 97 ~--~~~l~~i~~~~Lk~---gG~l~i~~pn~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf 169 (225)
T d2p7ia1 97 P--VALLKRINDDWLAE---GGRLFLVCPNANAVSRQ--IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169 (225)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCHHHH--HHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHhcCC---CceEEEEeCCcccHHHH--HHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCC
Confidence 8 68899998 78999 88888875532211000 0000 0000000 000113345699999999999999
Q ss_pred ccceEE
Q 017835 347 SDYKIT 352 (365)
Q Consensus 347 ~~~~~~ 352 (365)
++++..
T Consensus 170 ~i~~~~ 175 (225)
T d2p7ia1 170 QVTYRS 175 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987754
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=7.5e-16 Score=136.51 Aligned_cols=162 Identities=12% Similarity=0.138 Sum_probs=124.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
+.+++.+. ++++.+|||||||.|.++..+++.+ +++++++++ +..++.+++ .+++++..+|+.+....|
T Consensus 52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 55677777 8999999999999999999999998 589999999 777776653 689999999986543469
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc----cc-hhhhhhhhhhhh-hccCccccC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY----KT-TETQLFMDMLMM-VLVKGEERN 333 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~----~~-~~~~~~~d~~~~-~~~~~~~~t 333 (365)
|.|++..++.|+..+....++++++++|+| ||++++.......+.... +. .......++... ...+|...+
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPs 205 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 205 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCC
Confidence 999999999999877667899999999999 999999887654322110 00 011112222222 234677789
Q ss_pred HHHHHHHHHhcCCccceEEEcC
Q 017835 334 EKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 334 ~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
.+++..+++++||.+.++..+.
T Consensus 206 l~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 206 IPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHHHHTTTCEEEEEEECH
T ss_pred hhhHHHHHHHhchhhcccccch
Confidence 9999999999999999887763
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=1.8e-16 Score=141.10 Aligned_cols=101 Identities=18% Similarity=0.286 Sum_probs=88.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~~vl 268 (365)
..++.+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ +||+|++.+++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 56778999999999999999999887 478999999 888988875 3478999999987 555 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
||++++ .++|++++++||| ||++++.|+..
T Consensus 105 ~~~~d~--~~~l~~~~~~Lkp---gG~lii~~~~~ 134 (281)
T d2gh1a1 105 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPHW 134 (281)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECCH
T ss_pred hcCCCH--HHHHHHHHHHcCc---CcEEEEEECCc
Confidence 999988 5789999999999 99999998653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=1.1e-15 Score=135.76 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=122.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCCCc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIPPA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~~~ 259 (365)
..+++.+. ++++.+|||||||.|.++..++++++ ++++++++ +..++.+++ ..++++...|+..+...|
T Consensus 51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 55677777 89999999999999999999998885 79999999 776666553 578899888875444569
Q ss_pred eEEEeccccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCc------cchhhhhhhhhhhhh-
Q 017835 260 DAVLIKCVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADY------KTTETQLFMDMLMMV- 325 (365)
Q Consensus 260 D~i~~~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~------~~~~~~~~~d~~~~~- 325 (365)
|.|++..++.|+++ +.-..+|++++++||| ||++++.....++..... +. ......++....
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~p~-~~~~~~~fi~kyi 203 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPM-SLLRFIKFILTEI 203 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCHHHHHHHTCCCCH-HHHHHHHHHHHHT
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCcchhhhccCCCch-hhcccchHHHHHh
Confidence 99999999999986 3357899999999999 999999888765542210 00 011122222222
Q ss_pred ccCccccCHHHHHHHHHhcCCccceEEEcC
Q 017835 326 LVKGEERNEKEWAKLFFEAGFSDYKITDVL 355 (365)
Q Consensus 326 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 355 (365)
..+|...+..++..+++++||++..+...+
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeecc
Confidence 246777899999999999999998887764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=1e-15 Score=133.82 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=87.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D 260 (365)
.+++.+. ..+..+|||||||+|.++..|++. +.+++++|+ +.|++.|++ ..++++.++|+.+ +++ .||
T Consensus 32 ~~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD 107 (251)
T d1wzna1 32 EIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (251)
T ss_dssp HHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHhc--CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcccccccc
Confidence 3444444 567789999999999999999987 468999999 889998885 4589999999988 655 599
Q ss_pred EEEec-cccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 261 AVLIK-CVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 261 ~i~~~-~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+|++. .+++|++.++..++|++++++|+| ||++++-
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~ 144 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 99986 688888888889999999999999 8877764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.64 E-value=1.4e-15 Score=128.17 Aligned_cols=107 Identities=18% Similarity=0.237 Sum_probs=88.9
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-CCC-Cce
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-AIP-PAD 260 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~~-~~D 260 (365)
++.... ...+.+|||||||+|..+..|+++ +.+++++|+ +.+++.+++ .+++++...|+.+ +.+ .||
T Consensus 22 ~~~~~~--~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 97 (198)
T d2i6ga1 22 VLAAAK--VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD 97 (198)
T ss_dssp HHHHHT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred HHHHcc--cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence 444444 334469999999999999999998 568999999 888887764 4679999999987 333 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+|++..++||+++++..++|++++++|+| ||.+++.....
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~ 137 (198)
T d2i6ga1 98 FILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIVAAMD 137 (198)
T ss_dssp EEEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEBC
T ss_pred EEEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEEEecC
Confidence 99999999999998889999999999999 89888876643
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=1.3e-15 Score=130.85 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=108.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCCC--C--CceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEAI--P--PADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~--~--~~D~i~~~~vl 268 (365)
++++.+|||||||+|.++..+++..|+.+++++|. +.+++.++. ..++..+.+|...+. . .+|++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 78999999999999999999999999999999999 888887764 578888888887742 2 37888888888
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
|++.+. ..+++++++.||| ||++++.......+...+ .....+++.+.|+++||++
T Consensus 152 ~~~~~~--~~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~~-------------------~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 152 AQPNQA--EILIKNAKWFLKK---GGYGMIAIKARSIDVTKD-------------------PKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEGGGTCSSSC-------------------HHHHHHHHHHHHHHHTEEE
T ss_pred cchHHH--HHHHHHHHHhccc---CceEEEEeeccccCCCCC-------------------HHHHHHHHHHHHHHcCCEE
Confidence 877655 6789999999999 999998876554432211 0113467889999999999
Q ss_pred ceEEEcCC
Q 017835 349 YKITDVLG 356 (365)
Q Consensus 349 ~~~~~~~~ 356 (365)
++...+..
T Consensus 208 ve~idL~p 215 (230)
T d1g8sa_ 208 VDEVDIEP 215 (230)
T ss_dssp EEEEECTT
T ss_pred EEEecCCC
Confidence 99988854
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=1.3e-15 Score=130.74 Aligned_cols=99 Identities=14% Similarity=0.276 Sum_probs=86.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC--CceEEEeccccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP--PADAVLIKCVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh 269 (365)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+.++.+|+.+ +++ .||+|++..++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 56689999999999999999986 678999999 899988875 4578889999987 555 599999999999
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
|+++++..++|+++.++|+| ||++++..+.
T Consensus 114 ~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCc---CcEEEEEEcC
Confidence 99988888999999999999 8998887654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.60 E-value=4.9e-15 Score=124.29 Aligned_cols=103 Identities=8% Similarity=0.040 Sum_probs=88.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------------------CCCeEEEeCCCCCCCC-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------------------NGNLKYVGGNMFEAIP- 257 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~~~~- 257 (365)
..++.+|||||||+|..+..|+++ +.+++++|+ +.+++.+++ ...+++..+|+.+..+
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 678899999999999999999998 789999999 899998874 3456788888887332
Q ss_pred ---CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 017835 258 ---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMES 305 (365)
Q Consensus 258 ---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~ 305 (365)
.+|+|++..++|+++++.....+++++++||| ||++++.......
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~~ 143 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQ 143 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEccccc
Confidence 59999999999999998889999999999999 8988887665543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.60 E-value=2.2e-15 Score=131.38 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=79.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC-CCC-CceEEEec-cccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE-AIP-PADAVLIK-CVLH 269 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~~-~~D~i~~~-~vlh 269 (365)
.++.+|||||||+|.++..|++.+ .+++++|+ +.|++.|++ ..+++++++|+.+ +.+ .||+|+|. ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 345799999999999999999984 58999999 899998875 4589999999987 444 59999875 7787
Q ss_pred cC-ChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 270 NW-NDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 270 ~~-~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
|+ +.++..++|+++++.|+| ||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence 77 456778899999999999 787665
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.59 E-value=7.2e-16 Score=110.69 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=73.5
Q ss_pred HHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEec
Q 017835 24 WNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYIL 103 (365)
Q Consensus 24 ~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~ 103 (365)
+..+.+++.+.+|++|+++||||.|.+ +|+|++|||+++|+ ++..+.|+||+|++.|++++.+ ++.|.+
T Consensus 6 l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~---~~~~l~rlLr~l~a~gl~~e~~------~~~y~l 74 (85)
T d1tw3a1 6 LIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------PGEFVP 74 (85)
T ss_dssp HHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEE
T ss_pred HHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCc---ChhHHHHHHHHHHHCCCeEecC------CCeEec
Confidence 455588999999999999999999985 89999999999999 6899999999999999999886 799999
Q ss_pred CccchhhhcCC
Q 017835 104 TSASKLLLKDH 114 (365)
Q Consensus 104 t~~~~~l~~~~ 114 (365)
|+.|+.|.+|+
T Consensus 75 t~~s~~L~~Dh 85 (85)
T d1tw3a1 75 TEVGELLADDH 85 (85)
T ss_dssp CTTGGGGSTTS
T ss_pred CHHHHHhhcCC
Confidence 99999998774
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.2e-14 Score=122.49 Aligned_cols=132 Identities=9% Similarity=-0.042 Sum_probs=103.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------------------CCCeEEEeCCCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------------------NGNLKYVGGNMF 253 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~ 253 (365)
..++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 467789999999999999999987 779999999 888876542 358999999998
Q ss_pred C--CCC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCc
Q 017835 254 E--AIP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKG 329 (365)
Q Consensus 254 ~--~~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (365)
+ +.+ .+|+|+...++|++++++...+++++.++|+| ||++++.....+...... .-
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~~~~g-----------------pp 180 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPTKHPG-----------------PP 180 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTTCCC-----------------SS
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCCCCCC-----------------CC
Confidence 7 222 49999999999999999899999999999999 898888776654322110 00
Q ss_pred cccCHHHHHHHHHhcCCccceEE
Q 017835 330 EERNEKEWAKLFFEAGFSDYKIT 352 (365)
Q Consensus 330 ~~~t~~e~~~ll~~aGf~~~~~~ 352 (365)
-..+.+++.++|.. +|.+..+.
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEEEE
Confidence 12378899999865 67665443
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.52 E-value=5.8e-15 Score=107.11 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
+....+++++.+++.+.+|++|+++||||.|.. +|+|++|||+++|+ +++.+.|+||+|++.|+|++++. +
T Consensus 6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~---~~~~l~rLlr~L~a~gll~~~~d---~- 76 (92)
T d1qzza1 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGEK---Q- 76 (92)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCCC-----
T ss_pred hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCc---CchHHHHHHHHHHHCCCeeeecC---C-
Confidence 456788999999999999999999999999985 89999999999999 68999999999999999999752 1
Q ss_pred cceEecCccchhhhc
Q 017835 98 EEGYILTSASKLLLK 112 (365)
Q Consensus 98 ~~~y~~t~~~~~l~~ 112 (365)
.+.|++|+.+..|..
T Consensus 77 ~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 77 GRPLRPTRLGMLLAD 91 (92)
T ss_dssp CCCCEECTTGGGGST
T ss_pred CceecccHHHHhccC
Confidence 356999999988764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9e-14 Score=123.31 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=94.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCC--eEEEeec-hHHHHhccc-------CCCeEE--EeCCCC-------CC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKK----FPHI--ECTVFDQ-PHVVADLKS-------NGNLKY--VGGNMF-------EA 255 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~----~p~~--~~~~~D~-~~~~~~a~~-------~~~i~~--~~~d~~-------~~ 255 (365)
++..+|||||||+|.++..+++. +++. +++++|. +.+++.+++ ..++.+ ...++. .+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 44558999999999987776554 5554 5799998 888888764 233433 333332 12
Q ss_pred C--CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhh--hccCccc
Q 017835 256 I--PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMM--VLVKGEE 331 (365)
Q Consensus 256 ~--~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~ 331 (365)
. ..||+|++.+++||++++ .++|++++++|+| ||.++|........ + ...+..+... .......
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lkp---gG~l~i~~~~~~~~-----~--~~l~~~~~~~~~~~~~~~~ 186 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGSSG-----W--DKLWKKYGSRFPQDDLCQY 186 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTTSH-----H--HHHHHHHGGGSCCCTTSCC
T ss_pred CCCCceeEEEEccceecCCCH--HHHHHHHHhhCCC---CCEEEEEEecCcch-----H--HHHHHHHHHhcCCCccccc
Confidence 2 259999999999999887 6899999999999 89888876532211 1 0111111111 0123445
Q ss_pred cCHHHHHHHHHhcCCccc
Q 017835 332 RNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 332 ~t~~e~~~ll~~aGf~~~ 349 (365)
++.++|.++|++.||+..
T Consensus 187 ~~~~~~~~~L~~~G~~~~ 204 (280)
T d1jqea_ 187 ITSDDLTQMLDNLGLKYE 204 (280)
T ss_dssp CCHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHCCCceE
Confidence 688999999999999854
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=2e-14 Score=124.74 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=80.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCC--CceEEEe-ccccccCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIP--PADAVLI-KCVLHNWN 272 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~--~~D~i~~-~~vlh~~~ 272 (365)
.+++.+|||||||+|.++..|++. +.+++++|+ +.+++.+++.....++.+|+.+ +++ .||+|++ ..++||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 456789999999999999999876 679999999 9999999873333467788877 555 4999997 47899998
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 273 DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
++ .++|++++++|+| ||.+++..+
T Consensus 118 d~--~~~l~~i~r~Lk~---gG~~ii~~~ 141 (246)
T d2avna1 118 NK--DKAFSEIRRVLVP---DGLLIATVD 141 (246)
T ss_dssp CH--HHHHHHHHHHEEE---EEEEEEEEE
T ss_pred hH--HHHHHHHHhhcCc---CcEEEEEEC
Confidence 87 5789999999999 888887654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=2e-13 Score=115.41 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=100.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC-CC--Cce-EEEecccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA-IP--PAD-AVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~-~~--~~D-~i~~~~vl 268 (365)
++++.+|||||||+|..+..+++..|+.+++++|. +.+++.+++ ..++.++.+|...+ .+ .+| +.++.+.+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 78999999999999999999999999889999999 889888764 67999999998873 22 222 22333445
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCcc
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSD 348 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 348 (365)
+|+.+. ..+++++++.||| ||++++.......+...+ .. . ..++..+.+ ++||++
T Consensus 134 ~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~d~~~~---~~-~---------------~~~~~~~~l-~~gf~i 188 (209)
T d1nt2a_ 134 AQKNQI--EILKANAEFFLKE---KGEVVIMVKARSIDSTAE---PE-E---------------VFKSVLKEM-EGDFKI 188 (209)
T ss_dssp CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEHHHHCTTSC---HH-H---------------HHHHHHHHH-HTTSEE
T ss_pred cChhhH--HHHHHHHHHHhcc---CCeEEEEEEccccCCCCC---HH-H---------------HHHHHHHHH-HcCCEE
Confidence 555544 6789999999999 999998775432221110 00 0 011122233 379999
Q ss_pred ceEEEcCC---ceeEEEEe
Q 017835 349 YKITDVLG---VRSLIEVY 364 (365)
Q Consensus 349 ~~~~~~~~---~~~vi~~~ 364 (365)
++...+.. .+.+|.++
T Consensus 189 ~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 189 VKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp EEEEECTTTCTTEEEEEEE
T ss_pred EEEEccCCCccCcEEEEEE
Confidence 99888854 36666665
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=1.8e-13 Score=118.78 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=97.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCC--CCceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAI--PPADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--~~~D~i~~~~vlh 269 (365)
..++.+|||+|||+|.+++.+++. +.+++++|+ +.+++.+++ .-++++..+|+.+.. ..||+|+++...+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence 467899999999999999988775 568999999 889988875 346678888887643 3699999864433
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccc
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDY 349 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 349 (365)
...+++++++++||| ||++++.+... ...+++.+.++++||+++
T Consensus 196 -----~l~~l~~~~~~~Lkp---GG~lilSgil~----------------------------~~~~~v~~~~~~~Gf~~~ 239 (254)
T d2nxca1 196 -----LHAALAPRYREALVP---GGRALLTGILK----------------------------DRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEG----------------------------GGHHHHHHHHHHTTCEEE
T ss_pred -----cHHHHHHHHHHhcCC---CcEEEEEecch----------------------------hhHHHHHHHHHHCCCEEE
Confidence 346788999999999 89988864321 024677888999999999
Q ss_pred eEEEcCCceeE
Q 017835 350 KITDVLGVRSL 360 (365)
Q Consensus 350 ~~~~~~~~~~v 360 (365)
+.....++.++
T Consensus 240 ~~~~~~~Wv~l 250 (254)
T d2nxca1 240 EEAAEGEWVLL 250 (254)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 98888776554
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=6e-13 Score=111.34 Aligned_cols=103 Identities=17% Similarity=0.316 Sum_probs=83.6
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCCCCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~~-- 257 (365)
.+++.++ ..+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..++++..+|++++.+
T Consensus 43 lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~ 118 (194)
T d1dusa_ 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence 3555666 67789999999999999999998865 6888888 888888764 3579999999988554
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.||+|++..++|+. .+...++++++.+.|+| ||+++++
T Consensus 119 ~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~ 156 (194)
T d1dusa_ 119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVV 156 (194)
T ss_dssp CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEE
Confidence 49999998887754 44557899999999999 8888774
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.46 E-value=1.3e-13 Score=120.46 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=82.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CC--C-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AI--P-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~--~-~~D~i~~~ 265 (365)
.+++.+|||||||+|..+..+++... .+++|+|+ +.+++.|+. ..++.+..+|+.. +. . .||+|++.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 36778999999999999999988743 47999999 889988864 3478999999976 33 2 49999999
Q ss_pred cccccC--ChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 266 CVLHNW--NDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 266 ~vlh~~--~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
.++||+ +.+....+|++++++|+| ||.+++..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~~ 134 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTV 134 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCC---CCEEEEEe
Confidence 999997 345678899999999999 88887753
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.46 E-value=4.3e-14 Score=104.64 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCC---CCHHHHHHHcCCCCCC---cchHHHHHHHHHhcCceec
Q 017835 16 LLQSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKP---MTLNQLLTTLQIHPTK---TQCVYHLMRILVHSGFFAL 89 (365)
Q Consensus 16 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~---~t~~~la~~~~~~~~~---~~~l~~lL~~L~~~g~l~~ 89 (365)
..++....++++.+++.+.+|++|++|||+|+|...|+| +|+.||+.++.+++.+ +..+.|+||.|++.|+|..
T Consensus 3 ~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~ 82 (110)
T d1fp1d1 3 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS 82 (110)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCcccc
Confidence 345677889999999999999999999999999976434 8999999998864333 3469999999999999975
Q ss_pred cccC-CCC-ccceEecCccchhhhcCC
Q 017835 90 QKTS-ENE-QEEGYILTSASKLLLKDH 114 (365)
Q Consensus 90 ~~~~-~~~-~~~~y~~t~~~~~l~~~~ 114 (365)
.... ++| .+..|.+|+.+++|++++
T Consensus 83 ~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 83 TTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccccCCCCCeeeEEecchhhHhhcCCC
Confidence 4321 222 134699999999999875
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.7e-13 Score=120.61 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=81.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCC-CCC--CceEEEeccccccCCh
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFE-AIP--PADAVLIKCVLHNWND 273 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~~--~~D~i~~~~vlh~~~~ 273 (365)
.++.+|||||||+|.++..|++.+|+.+++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 5678999999999999999999999999999999 889988876 7899999999988 655 4999999888876
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 274 EECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 274 ~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
+++++|+||| ||.+++..+..
T Consensus 160 ------~~e~~rvLkp---gG~l~~~~p~~ 180 (268)
T d1p91a_ 160 ------AEELARVVKP---GGWVITATPGP 180 (268)
T ss_dssp ------HHHHHHHEEE---EEEEEEEEECT
T ss_pred ------HHHHHHHhCC---CcEEEEEeeCC
Confidence 4678999999 99999987643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.5e-14 Score=125.18 Aligned_cols=140 Identities=14% Similarity=0.055 Sum_probs=96.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CC--Ce--------------------------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NG--NL-------------------------- 245 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~--~i-------------------------- 245 (365)
..++.+|||||||+|.++..++... ..+++++|+ +.+++.+++ .. .+
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3567899999999998877666553 237999999 888888764 11 10
Q ss_pred -----EEEeCCCCC-----CCC--CceEEEeccccccCCh--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCcc
Q 017835 246 -----KYVGGNMFE-----AIP--PADAVLIKCVLHNWND--EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYK 311 (365)
Q Consensus 246 -----~~~~~d~~~-----~~~--~~D~i~~~~vlh~~~~--~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~ 311 (365)
.....+... +.+ .||+|++..++||++. ++...+++++++.||| ||.+++.+..........
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~~~~~~- 203 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYMVG- 203 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEEET-
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEecccccceec-
Confidence 111122221 223 4999999999999863 4567899999999999 899998877543321100
Q ss_pred chhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEEc
Q 017835 312 TTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITDV 354 (365)
Q Consensus 312 ~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 354 (365)
.. .......+.++|+++|+++||+++++...
T Consensus 204 ----~~--------~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 204 ----KR--------EFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp ----TE--------EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----cc--------cccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 00 01123458999999999999998887544
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.43 E-value=7.1e-14 Score=103.17 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCC--CCCCHHHHHHHcCCC-CCCcchHHHHHHHHHhcCceeccccC-
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHA--KPMTLNQLLTTLQIH-PTKTQCVYHLMRILVHSGFFALQKTS- 93 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~--~~~t~~~la~~~~~~-~~~~~~l~~lL~~L~~~g~l~~~~~~- 93 (365)
++....++++.+++.+.+|++|++|||||+|...| +++|+.||+.++..+ |..+..++|+||+|++.|+|......
T Consensus 6 e~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~ 85 (107)
T d1kyza1 6 EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQ 85 (107)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecC
Confidence 34446679999999999999999999999998754 478999999999884 32346799999999999999864321
Q ss_pred CCC-ccceEecCccchhhhcCC
Q 017835 94 ENE-QEEGYILTSASKLLLKDH 114 (365)
Q Consensus 94 ~~~-~~~~y~~t~~~~~l~~~~ 114 (365)
+|| .+..|.+|+.+++|++++
T Consensus 86 ~dg~~~~~Y~LTpvsk~Lv~de 107 (107)
T d1kyza1 86 QDGKVQRLYGLATVAKYLVKNE 107 (107)
T ss_dssp TTSCEEEEEEECHHHHHHSCCT
T ss_pred CCCCeeeEEecchhHHhhcCCC
Confidence 222 124699999999999763
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.5e-13 Score=120.77 Aligned_cols=139 Identities=17% Similarity=0.128 Sum_probs=96.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CC----------------------------
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NG---------------------------- 243 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~---------------------------- 243 (365)
...+.+|||||||+|.+....+.... .+++++|. +.+++.+++ ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 45678999999999977654444432 37999999 888887763 10
Q ss_pred ---CeEEEeCCCCCC-------CC--CceEEEeccccccCCh--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccC
Q 017835 244 ---NLKYVGGNMFEA-------IP--PADAVLIKCVLHNWND--EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKAD 309 (365)
Q Consensus 244 ---~i~~~~~d~~~~-------~~--~~D~i~~~~vlh~~~~--~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~ 309 (365)
...+...|+.++ .+ .||+|++..+||+.+. ++-.++|++++++||| ||.|++...........
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~~~~~ 207 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYLA 207 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEEE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCccccc
Confidence 012345566652 11 4999999999999863 3467899999999999 99998887754322110
Q ss_pred ccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCccceEEE
Q 017835 310 YKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFSDYKITD 353 (365)
Q Consensus 310 ~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 353 (365)
. .. .......+.++++++|+++||+++++..
T Consensus 208 ~-------~~------~~~~~~~t~e~v~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 208 G-------EA------RLTVVPVSEEEVREALVRSGYKVRDLRT 238 (263)
T ss_dssp T-------TE------EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred C-------Cc------ccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 0 00 0112235999999999999999876553
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.1e-13 Score=119.02 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=91.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC---CCC--CceEEE----
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE---AIP--PADAVL---- 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~~--~~D~i~---- 263 (365)
..+.+|||||||+|..+..+++..+ .+++++|+ +.+++.+++ ..++.++.+|... +++ .||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 5678999999999999999998754 58999999 889998875 4567777776544 344 488876
Q ss_pred -eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHH
Q 017835 264 -IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFF 342 (365)
Q Consensus 264 -~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 342 (365)
+...++|+.+. ..++++++++||| ||++++.+......... ..+ ........+.+...+.
T Consensus 131 ~~~~~~~~~~~~--~~~~~~~~r~Lkp---GG~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~l~ 191 (229)
T d1zx0a1 131 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNLTSWGELMK-------SKY-------SDITIMFEETQVPALL 191 (229)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCHHHHHHHTT-------TTC-------SCHHHHHHHHTHHHHH
T ss_pred ccccccccccCH--HHHHHHHHHHcCC---CcEEEEEecCCcchhhh-------hhh-------hhcchhhhhHHHHHHH
Confidence 45666766665 6799999999999 88887644322110000 000 0111112355667788
Q ss_pred hcCCccceEE
Q 017835 343 EAGFSDYKIT 352 (365)
Q Consensus 343 ~aGf~~~~~~ 352 (365)
++||+...+.
T Consensus 192 ~agF~~~~i~ 201 (229)
T d1zx0a1 192 EAGFRRENIR 201 (229)
T ss_dssp HTTCCGGGEE
T ss_pred HCCCeeEEEE
Confidence 9999877664
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=3e-12 Score=111.24 Aligned_cols=104 Identities=13% Similarity=0.307 Sum_probs=87.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc---------CCCeEEEeCCCCC-C
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS---------NGNLKYVGGNMFE-A 255 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~ 255 (365)
..++..++ .+++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++ ..++.++.+|+.+ +
T Consensus 86 s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 86 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 34566666 899999999999999999999998 79999999999 888888874 5799999999987 4
Q ss_pred CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 256 IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 256 ~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
++ .||.|++ |++++ .+++.+++++||| ||++++..+..
T Consensus 164 ~~~~~fDaV~l-----dlp~P--~~~l~~~~~~Lkp---GG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCH--HHHHHHHHhccCC---CCEEEEEeCcc
Confidence 55 4999976 56777 5789999999999 99998876543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.35 E-value=1.2e-12 Score=112.99 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=81.3
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP-- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~-- 257 (365)
.++..++ .+++.+|||+|||+|.++..|++. .|+.+++++|. +.+++.|++ ..++++..+|+.+..+
T Consensus 76 ~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 76 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 3555666 789999999999999999999987 68889999999 888888774 5789999999988554
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.||.|++ +++++ .++|++++++||| ||++++..+
T Consensus 154 ~fD~V~l-----d~p~p--~~~l~~~~~~LKp---GG~lv~~~P 187 (250)
T d1yb2a1 154 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLP 187 (250)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEES
T ss_pred eeeeeee-----cCCch--HHHHHHHHHhcCC---CceEEEEeC
Confidence 4999986 35555 5779999999999 899887644
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=1.4e-11 Score=104.92 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=99.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCC--C----CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEA--I----PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~--~----~~~D~i~~~ 265 (365)
++++.+|||+|||+|.++..|++. .|+-+++++|. +.+++.++. ..++..+..|...+ . +.+|++++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 789999999999999999999997 48889999999 888887764 56788888887663 1 23666654
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAG 345 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 345 (365)
.+++..+ ...+++++++.||| ||++++.......+.... ...-..+..++ .+.|
T Consensus 150 -d~~~~~~--~~~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~~-------------------~~~v~~~v~~l-~~~g 203 (227)
T d1g8aa_ 150 -DVAQPTQ--AKILIDNAEVYLKR---GGYGMIAVKSRSIDVTKE-------------------PEQVFREVERE-LSEY 203 (227)
T ss_dssp -CCCSTTH--HHHHHHHHHHHEEE---EEEEEEEEEGGGTCTTSC-------------------HHHHHHHHHHH-HHTT
T ss_pred -Eccccch--HHHHHHHHHHhccc---CCeEEEEEECCccCCCCC-------------------HHHHHHHHHHH-HHcC
Confidence 3443333 36789999999999 898888654332221110 00011233444 4569
Q ss_pred CccceEEEcCCc---eeEEEEeC
Q 017835 346 FSDYKITDVLGV---RSLIEVYP 365 (365)
Q Consensus 346 f~~~~~~~~~~~---~~vi~~~~ 365 (365)
|++++...+..+ +.++.++|
T Consensus 204 f~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred CEEEEEEcCCCCCCceEEEEEEe
Confidence 999998887443 77888775
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=3.1e-12 Score=111.76 Aligned_cols=126 Identities=14% Similarity=0.199 Sum_probs=98.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC-
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP- 257 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~- 257 (365)
..++..++ ++++.+|||+|||+|.++..|++.. |+.+++++|. +.+++.|++ .+++.+..+|+...++
T Consensus 93 ~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 93 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 34566677 8999999999999999999999884 8899999999 899988875 4788899999876544
Q ss_pred -CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHH
Q 017835 258 -PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKE 336 (365)
Q Consensus 258 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 336 (365)
.+|.|+ ++++++ .++|+++.++||| ||++++..+... ..++
T Consensus 171 ~~~D~V~-----~d~p~p--~~~l~~~~~~LKp---GG~lv~~~P~~~----------------------------Qv~~ 212 (266)
T d1o54a_ 171 KDVDALF-----LDVPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQE 212 (266)
T ss_dssp CSEEEEE-----ECCSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred cceeeeE-----ecCCCH--HHHHHHHHhhcCC---CCEEEEEeCccc----------------------------HHHH
Confidence 478765 467777 5789999999999 999988654210 1234
Q ss_pred HHHHHHhcCCccceEEE
Q 017835 337 WAKLFFEAGFSDYKITD 353 (365)
Q Consensus 337 ~~~ll~~aGf~~~~~~~ 353 (365)
..+.+++.||..+++..
T Consensus 213 ~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 213 TLKKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHCCceeEEEEE
Confidence 56667888987766654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.31 E-value=2.7e-12 Score=106.50 Aligned_cols=99 Identities=21% Similarity=0.340 Sum_probs=81.1
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC---CCCC
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE---AIPP 258 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~~~ 258 (365)
++..+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 445555 6889999999999999999998764 58999999 899998875 4799999999877 3346
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
||+|++....+++ .++++++.+.|+| ||++++..
T Consensus 101 ~D~v~~~~~~~~~-----~~~~~~~~~~Lkp---gG~lvi~~ 134 (186)
T d1l3ia_ 101 IDIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVTA 134 (186)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEEE
T ss_pred cCEEEEeCccccc-----hHHHHHHHHHhCc---CCEEEEEe
Confidence 9999998766542 5689999999999 89887754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=3.6e-12 Score=113.52 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=77.8
Q ss_pred HHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---C
Q 017835 190 LIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---A 255 (365)
Q Consensus 190 ~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~ 255 (365)
+...+. ..+..+|||||||+|..+..|+++ +.+++++|+ +.+++.|++ ..+..+...|+.. .
T Consensus 48 l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T d1xvaa_ 48 LLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 123 (292)
T ss_dssp HHHHHH--HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred HHHHhh--hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence 344444 456789999999999999999987 579999999 899998864 1234455666654 1
Q ss_pred C---CCceEEEec-cccccCCh-----hHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 256 I---PPADAVLIK-CVLHNWND-----EECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 256 ~---~~~D~i~~~-~vlh~~~~-----~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
. ..||+|++. .+++|+++ ++...+|++++++|+| ||.+++
T Consensus 124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~ 172 (292)
T d1xvaa_ 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVI 172 (292)
T ss_dssp SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEE
Confidence 2 259998875 68888864 4567899999999999 787666
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.30 E-value=8e-12 Score=104.74 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CCC--CceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AIP--PADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~~--~~D~i~~~~v 267 (365)
....|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..++.++.+|+.. .++ .+|.|++.+.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 345899999999999999999999999999998 777776653 5789999999876 144 4899988777
Q ss_pred cccCChhH------HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWNDEE------CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~~~------~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
..+..... ...+|+.++++||| ||.|+|..
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 65433322 14799999999999 99998864
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=7.5e-11 Score=102.90 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=100.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC--CceEEEecccc-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--PADAVLIKCVL- 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--~~D~i~~~~vl- 268 (365)
....+|||+|||+|..++.++..+|+.+++++|. +..++.|++ ..+|+++.+|++++.+ .||+|+++--.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999999 888888875 4689999999999765 49999996221
Q ss_pred ------------ccCCh----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhc
Q 017835 269 ------------HNWND----------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVL 326 (365)
Q Consensus 269 ------------h~~~~----------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 326 (365)
.+-+. ....++++++.+.|+| ||.+++ |.-.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l-Eig~----------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL-EHGW----------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE-ECCS-----------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE-EECc-----------------------
Confidence 11110 2345688888999999 666665 4211
Q ss_pred cCccccCHHHHHHHHHhcCCccceEEEc-CCceeEEEEe
Q 017835 327 VKGEERNEKEWAKLFFEAGFSDYKITDV-LGVRSLIEVY 364 (365)
Q Consensus 327 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 364 (365)
...+.+.+++++.||+.++++.- .+.-.+|.++
T Consensus 240 -----~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 240 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred -----hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 02456788899999997776554 5556666654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=8.3e-12 Score=105.64 Aligned_cols=98 Identities=16% Similarity=0.297 Sum_probs=81.1
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC---
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-PHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP--- 257 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~--- 257 (365)
.+++.+. ++++.+|||||||+|..+..|++.. ++.+++++|. +.+++.+++ ..++.++.+|..+..+
T Consensus 66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 3556666 7899999999999999999999874 6789999998 888888875 6789999999877332
Q ss_pred CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 258 PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 258 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.||+|++..++++.+++ +.+.|+| ||+|++.
T Consensus 144 ~fD~I~~~~~~~~~p~~--------l~~~Lkp---GG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPET--------WFTQLKE---GGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCHH--------HHHHEEE---EEEEEEE
T ss_pred chhhhhhhccHHHhHHH--------HHHhcCC---CcEEEEE
Confidence 59999999999988753 5677999 8998873
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=7.9e-12 Score=112.89 Aligned_cols=111 Identities=12% Similarity=0.147 Sum_probs=89.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEEEeCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKYVGGN 251 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d 251 (365)
..+++.+. +++..+|||||||+|..+..++..++..+++|+|+ +.+++.+++ ..+++++++|
T Consensus 141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 44666676 78899999999999999999999998889999999 777776652 4689999999
Q ss_pred CCC-CCC----CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 252 MFE-AIP----PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 252 ~~~-~~~----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
+.+ ++. .+|+|++.+.+| ++ +..+.|+++.+.||| ||++++.+...+..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f-~~--~~~~~l~e~~r~LKp---Gg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKE---GGRIVSSKPFAPLN 272 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT-CH--HHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccccccccccCcceEEEEcceec-ch--HHHHHHHHHHHhCCC---CcEEEEecccCCCC
Confidence 988 432 368888866554 33 346889999999999 99999888765543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.19 E-value=1.1e-10 Score=97.55 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=76.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC---CCC--CceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE---AIP--PADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~~--~~D~i~~~~v 267 (365)
....|||||||+|.++..+++.+|+..++|+|+ +.++..+.+ ..++.++.+|+.. .++ .+|.|++.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 345899999999999999999999999999998 777776543 5789999999876 234 4888876553
Q ss_pred cccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 268 LHNWNDEE-------CVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 268 lh~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
- .|+... ...+|+.++++|+| ||.|++..
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~T 146 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 146 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 3 243321 15789999999999 99998754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=4.8e-11 Score=109.55 Aligned_cols=111 Identities=17% Similarity=0.259 Sum_probs=85.5
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEE-EeC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKY-VGG 250 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~-~~~ 250 (365)
..+++.++ ++++.+|||||||+|..+..++..++..+++|+|+ +.+++.|++ ...+.+ ..+
T Consensus 206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 45666676 88999999999999999999999998779999999 888887763 223333 455
Q ss_pred CCCCC------CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 251 NMFEA------IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 251 d~~~~------~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
++... ++.+|++++.+.+| +++..+.|+++++.||| ||+|++.+...+..
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LKP---GGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAKV---GCKIISLKSLRSLT 339 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred chhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcCC---CcEEEEecccCCCc
Confidence 66552 23589998876543 23457899999999999 99999988766544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.7e-11 Score=100.25 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=79.8
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCCC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFEA 255 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~ 255 (365)
.+++.+....+++.+|||||||+|..+..|++. .|..+++++|. +++++.+++ ..++.++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 345555222678899999999999999988885 57889999999 888887753 46899999998873
Q ss_pred CC---CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 256 IP---PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 256 ~~---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
.+ .||+|++..++++.+++ +.+.||| ||+|++.
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~~--------l~~~Lkp---GG~LV~p 180 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQA--------LIDQLKP---GGRLILP 180 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCHH--------HHhhcCC---CcEEEEE
Confidence 32 59999999999887653 5678999 8999884
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.4e-10 Score=103.76 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=83.7
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc-----------------CCCeEEE
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS-----------------NGNLKYV 248 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~i~~~ 248 (365)
..++..++ +.++.+|||+|||+|.++..|++. .|+.+++++|. +++++.|++ .+++.+.
T Consensus 88 ~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 88 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 34666677 899999999999999999999987 68899999999 888887763 4689999
Q ss_pred eCCCCCC---CC--CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 249 GGNMFEA---IP--PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 249 ~~d~~~~---~~--~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
.+|+.+. ++ .||.|++ +++++ ..+|.+++++||| ||+|+++-+..
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P--~~~l~~~~~~LKp---GG~lv~~~P~i 215 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNP--HVTLPVFYPHLKH---GGVCAVYVVNI 215 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSST--TTTHHHHGGGEEE---EEEEEEEESSH
T ss_pred ecchhhcccccCCCCcceEee-----cCcCH--HHHHHHHHHhccC---CCEEEEEeCCH
Confidence 9998763 22 4899876 45655 4579999999999 99999876544
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.07 E-value=3.1e-10 Score=96.09 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=77.8
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCCCCC---Cce
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFEAIP---PAD 260 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~~---~~D 260 (365)
.+++.++ ++++.+|||||||+|.++..|++.. .+++++|. +...+.+++ ..+++++.+|.....+ +||
T Consensus 61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 3556666 7899999999999999999888874 58999998 888877764 6799999999877333 599
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 261 AVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 261 ~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+|++...+++.++. +.+.|+| ||+|++.
T Consensus 137 ~Iiv~~a~~~ip~~--------l~~qLk~---GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLCK--------PYEQLKE---GGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred HHHhhcchhhhhHH--------HHHhcCC---CCEEEEE
Confidence 99999988877653 4567999 8998874
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=4.6e-10 Score=100.67 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=75.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++++|||||||+|.++..+++..+ .+++++|..++...+++ .++|+++.+|+.+ +.+ .+|+|++..+
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 109 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeee
Confidence 34578999999999999998888643 48999998444444332 6789999999988 544 5999999877
Q ss_pred cccCChh-HHHHHHHHHHHhcccCCCCcEEEE
Q 017835 268 LHNWNDE-ECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 268 lh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.|++..+ ....++..+.+.|+| ||.++-
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp---~G~iiP 138 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAP---DGLIFP 138 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred eeeeccHHHHHHHHHHHHhcCCC---CeEEEe
Confidence 7765543 457889999999999 887763
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.00 E-value=7.3e-10 Score=99.86 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=74.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEecccc
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCVL 268 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~vl 268 (365)
.++++|||||||+|.++..++++. ..+++++|..+++..+++ ..+++++.+|+.+ +.| .+|+|++..+.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 457899999999999998777764 348999999666665553 6789999999988 555 49999998777
Q ss_pred ccCCh-hHHHHHHHHHHHhcccCCCCcEEE
Q 017835 269 HNWND-EECVKILKNCKKAIAINGKAGKVI 297 (365)
Q Consensus 269 h~~~~-~~~~~~L~~i~~~L~p~~~gG~ll 297 (365)
++... .....++..+.+.||| ||+++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~Lkp---gG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeeccchhHHHHHHHHHhccCC---CeEEE
Confidence 66543 3446788888999999 78775
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.5e-09 Score=95.48 Aligned_cols=97 Identities=22% Similarity=0.204 Sum_probs=74.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc-------CCCeEEEeCCCCC-CCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS-------NGNLKYVGGNMFE-AIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~~--~~D~i~~~~v 267 (365)
..++++|||||||+|.++..+++..+ .+++++|..+....+.+ .++++++.+|+.+ +.+ .+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44678999999999999998888754 48999999433333331 6789999999988 444 5999999888
Q ss_pred cccCChh-HHHHHHHHHHHhcccCCCCcEEEE
Q 017835 268 LHNWNDE-ECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 268 lh~~~~~-~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
.|+...+ ....++....+.|+| ||+++.
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAK---GGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEES
T ss_pred eeecccccccHHHHHHHHhcCCC---CcEEec
Confidence 7776554 345677777889999 787763
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.95 E-value=1.7e-09 Score=89.67 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=73.0
Q ss_pred cCCCeEEEecCCccHHH----HHHHHHC----CCCeEEEeec-hHHHHhccc----------------------------
Q 017835 199 EGLNTLVDVGGGTGTLA----SAIAKKF----PHIECTVFDQ-PHVVADLKS---------------------------- 241 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~----~~l~~~~----p~~~~~~~D~-~~~~~~a~~---------------------------- 241 (365)
.+..+|+++|||+|.-. ..+.+.. +.+++++.|+ +..++.|+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 44579999999999743 3333331 3457899999 888887752
Q ss_pred ---------CCCeEEEeCCCCCC----CCCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 242 ---------NGNLKYVGGNMFEA----IPPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 242 ---------~~~i~~~~~d~~~~----~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
...+.+...+...+ ..++|+|+|.+||++++++...++++++++.|+| ||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 12345666666652 1259999999999999999999999999999999 787666
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=2.4e-09 Score=88.32 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=87.7
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCC------
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFE------ 254 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~------ 254 (365)
..++++.+. ..++..+||++||+|.++..+++.+|+.+++++|. +.+++.+++ ..|+.++.++|.+
T Consensus 12 l~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 12 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 355666666 67889999999999999999999999999999999 999998875 6799999999876
Q ss_pred C--CCCceEEEecccc--ccCC-----hhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 255 A--IPPADAVLIKCVL--HNWN-----DEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 255 ~--~~~~D~i~~~~vl--h~~~-----~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
. ..++|.|++-.-+ ++++ -....+.|..+.++|+| ||+++++.+..
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s 144 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHS 144 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeecccc
Confidence 1 2358888775333 1111 12345778899999999 99999988654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.90 E-value=2.7e-09 Score=89.57 Aligned_cols=97 Identities=20% Similarity=0.333 Sum_probs=78.2
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCCC---C
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAIP---P 258 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~~---~ 258 (365)
.+++.++ ++++.+|||||||+|..+..|++.. +.+++++|. +.+.+.+++ ..++.++.+|..+-.+ +
T Consensus 69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 4556666 7889999999999999999888765 457889988 778887774 5899999999988433 5
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
||.|++...+.+.++. +.+.|+| ||++++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence 9999999999877654 4456999 8988874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=3.1e-09 Score=89.86 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=77.0
Q ss_pred HHHhhccccccCCCeEEEecCCccHHHHHHHHH------CCCCeEEEeec-hHHHHhccc-----------CCCeEEEeC
Q 017835 189 ALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK------FPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGG 250 (365)
Q Consensus 189 ~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~ 250 (365)
.+++.+...++++.+|||||||+|..+..|++. .+..+++++|. ++.++.+++ ..++.+..+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 344544212678899999999999999888775 24568999998 777777653 458999999
Q ss_pred CCCCCC---CCceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 251 NMFEAI---PPADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 251 d~~~~~---~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
|..+.. .+||.|++...+.+.++. +.+.|+| ||++++.
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~---gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLAS---GGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchHH--------HHHhcCC---CcEEEEE
Confidence 998733 259999999999877653 5678999 8999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=9.4e-09 Score=88.96 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=88.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC--CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP--PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~--~~D~i~~~~v 267 (365)
.+++.+|||+|||+|.++..+++. +..+++++|+ |..++.+++ .++|+++.+|..+-.+ .||.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 467899999999999999999987 4579999999 888887764 5789999999987333 4999987532
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhcCCc
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEAGFS 347 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 347 (365)
- ....++.++.+.|+| ||.|.+.+.+..+... ....+.+.++....||+
T Consensus 184 ~------~~~~~l~~a~~~l~~---gG~lh~~~~~~~~~~~----------------------~~~~e~~~~~~~~~g~~ 232 (260)
T d2frna1 184 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD 232 (260)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred C------chHHHHHHHHhhcCC---CCEEEEEeccccccch----------------------hhHHHHHHHHHHHcCCc
Confidence 1 224578888899999 8887766554322111 11346677888889997
Q ss_pred cc
Q 017835 348 DY 349 (365)
Q Consensus 348 ~~ 349 (365)
+.
T Consensus 233 v~ 234 (260)
T d2frna1 233 VE 234 (260)
T ss_dssp EE
T ss_pred eE
Confidence 64
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.4e-07 Score=80.99 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=58.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC----C---C--CceE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA----I---P--PADA 261 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~----~---~--~~D~ 261 (365)
....++||||||+|..+..|+.++|+.+++++|+ +.+++.|++ .+++.++..+.... . . .||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4567999999999999999999999999999999 888988875 67888887554431 1 1 4999
Q ss_pred EEecccccc
Q 017835 262 VLIKCVLHN 270 (365)
Q Consensus 262 i~~~~vlh~ 270 (365)
|+++--.+.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999877663
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.54 E-value=5.6e-08 Score=77.03 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC----CCCceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA----IPPADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~----~~~~D~i~~~~v 267 (365)
.+.+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++.+|..+. ...||+|++.-.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4689999999999999988887553 8999999 888877664 57799999998762 235999988532
Q ss_pred cccCChhHHHHHHHHHH--HhcccCCCCcEEEEEeee
Q 017835 268 LHNWNDEECVKILKNCK--KAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~--~~L~p~~~gG~lli~e~~ 302 (365)
. .......+|..+. +.|+| +|. +++|..
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~---~g~-iiiE~~ 122 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSE---QVM-VVCETD 122 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEE---EEE-EEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCC---CeE-EEEEeC
Confidence 1 2333456666665 46898 454 556653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.51 E-value=1.5e-07 Score=77.41 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=55.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-CCCeEEEeCCCCCCCCCceEEEeccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-NGNLKYVGGNMFEAIPPADAVLIKCV 267 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~~~~D~i~~~~v 267 (365)
.+++|||+|||+|.+++.++...+ .+++++|. +.+++.+++ ..++.++.+|+.+....||+|+++-.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCcc
Confidence 468999999999999988777644 47999999 888888886 67899999998764456999998644
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=2.6e-07 Score=79.80 Aligned_cols=66 Identities=21% Similarity=0.390 Sum_probs=56.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCCC----CceEEEec
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAIP----PADAVLIK 265 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~~----~~D~i~~~ 265 (365)
.+..+++|+|||+|..+..+++ +|+.+++++|. +..++.+++ ..++.+..+|++++.+ .||+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 4567999999999999999874 69999999999 888888875 5688899999998543 59999986
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=3.4e-07 Score=81.67 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=74.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-------CCCceEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-------IPPADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-------~~~~D~i 262 (365)
.+++.+|||++||+|.++..++.... .+++++|. +..++.+++ .++++++.+|+++. -..||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 46788999999999999999987743 48999999 888888775 46889999998862 1259999
Q ss_pred EeccccccCCh---h----HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 263 LIKCVLHNWND---E----ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 263 ~~~~vlh~~~~---~----~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
++.-...--.. . .-.++++.+.++|+| ||.|+....
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s~ 264 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 264 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 98432211111 1 124578888999999 887777653
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.40 E-value=3.7e-07 Score=76.36 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=73.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCCC---------CCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEAI---------PPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~---------~~~ 259 (365)
..++++|||||||+|..+..+++..+ +.+++.+|. +...+.++. .++|+++.||..+-. ..|
T Consensus 54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 35568999999999999999999865 679999999 777887764 578999999987621 248
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
|+|++-+ ..+.......+.+..+.|+| || ++|+|.+.-
T Consensus 134 D~ifiD~---~~~~~~~~~~l~~~~~lLkp---GG-vIv~Ddvl~ 171 (214)
T d2cl5a1 134 DMVFLDH---WKDRYLPDTLLLEKCGLLRK---GT-VLLADNVIV 171 (214)
T ss_dssp EEEEECS---CGGGHHHHHHHHHHTTCEEE---EE-EEEESCCCC
T ss_pred ceeeecc---cccccccHHHHHHHhCccCC---Cc-EEEEeCcCC
Confidence 9998752 11222223456677788999 55 667666553
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.2e-07 Score=75.58 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=75.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC---------CCCc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA---------IPPA 259 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---------~~~~ 259 (365)
..+.++|||||||+|.-+..+++..| +.+++.+|. +...+.+++ .++++++.||..+. ...|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 45679999999999999999999876 689999998 777777764 68899999997661 1259
Q ss_pred eEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 260 DAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
|+|++.+ ....-...+..+.+.|+| | .++|+|.+.
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~---G-Gvii~Dn~l 171 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRP---G-GILAVLRVL 171 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEE---E-EEEEEECCS
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcC---C-cEEEEeCCc
Confidence 9998853 233446788899999999 4 455555444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.34 E-value=4.9e-07 Score=79.88 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=75.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----------CCCeEEEeCCCCC---CCC-CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----------NGNLKYVGGNMFE---AIP-PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~---~~~-~~D~i 262 (365)
+..++||.||+|.|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 5678999999999999999998888889999999 888887763 5799999999987 223 59999
Q ss_pred Eeccc--cccCCh---hHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 263 LIKCV--LHNWND---EECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 263 ~~~~v--lh~~~~---~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
++-.. ...-.. --..++++.+++.|+| ||.+++.
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ 194 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCC---CceEEEe
Confidence 96432 111011 1125789999999999 7766654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.34 E-value=5.2e-07 Score=80.15 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=73.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC-------CCCceEEEe
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA-------IPPADAVLI 264 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-------~~~~D~i~~ 264 (365)
..+.+|||++||+|.++..++.. ..+++++|. +.+++.+++ .++++++.+|.++. -..||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 35789999999999999998865 568999999 888888875 46899999998761 125999998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 265 KCVLHNWND-------EECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 265 ~~vlh~~~~-------~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.--...-+. ..-.++++.+.++|+| ||.|+....
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~sc 262 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 262 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence 532211111 1124688899999999 887776543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.33 E-value=1.2e-06 Score=72.42 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=55.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCCCCceEEEeccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAIPPADAVLIKCVLH 269 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~~~D~i~~~~vlh 269 (365)
.+.+|||+|||+|.+++.++... ..+++++|. +.+++.+++ ..+..+..+|..+....||+|++.--.+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFG 120 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCS
T ss_pred CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccc
Confidence 46799999999999999887654 358999999 888887764 5678889999876555699999865543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.28 E-value=7.9e-07 Score=71.58 Aligned_cols=94 Identities=12% Similarity=0.177 Sum_probs=61.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-----CCCCceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-----AIPPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-----~~~~~D~i~~ 264 (365)
...+.+|||+|||+|.++++.+.+ +.+++.+|. +.+++.+++ ..++.....|.+. ....||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 356789999999999999988887 568899999 888887764 3455554554432 1235999988
Q ss_pred ccccccCChhHHHHHHHHH--HHhcccCCCCcEEEEEee
Q 017835 265 KCVLHNWNDEECVKILKNC--KKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i--~~~L~p~~~gG~lli~e~ 301 (365)
.--. +.... +++.++ ...|+| || ++++|.
T Consensus 117 DPPY-~~~~~---~~l~~l~~~~ll~~---~g-~ivie~ 147 (171)
T d1ws6a1 117 APPY-AMDLA---ALFGELLASGLVEA---GG-LYVLQH 147 (171)
T ss_dssp CCCT-TSCTT---HHHHHHHHHTCEEE---EE-EEEEEE
T ss_pred cccc-ccCHH---HHHHHHHHcCCcCC---Ce-EEEEEe
Confidence 5332 22322 223333 346888 55 555665
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.22 E-value=1.1e-06 Score=76.59 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=74.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CCC-CceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AIP-PADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~~-~~D~i~ 263 (365)
+..++||-||+|.|..+..+++..|..+++.+|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4578999999999999999998877889999999 888888764 5799999999887 223 599999
Q ss_pred eccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+-..-..-... -..++++.+++.|+| ||.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEEe
Confidence 75322110110 126789999999999 7766654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.20 E-value=2.2e-06 Score=72.50 Aligned_cols=83 Identities=8% Similarity=0.288 Sum_probs=63.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC-ce
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP-AD 260 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~-~D 260 (365)
..+++..+ ..++.+|||||||+|.++..|++.. .+++++|. +..++.+++ .++++++.+|+.+ +++. ..
T Consensus 11 ~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~ 86 (235)
T d1qama_ 11 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 86 (235)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence 44555565 6788999999999999999999984 57888888 777776653 6789999999998 5553 33
Q ss_pred EEEeccccccCChh
Q 017835 261 AVLIKCVLHNWNDE 274 (365)
Q Consensus 261 ~i~~~~vlh~~~~~ 274 (365)
..+..+.-++++.+
T Consensus 87 ~~vv~NLPYnIss~ 100 (235)
T d1qama_ 87 YKIFGNIPYNISTD 100 (235)
T ss_dssp CEEEEECCGGGHHH
T ss_pred ceeeeeehhhhhHH
Confidence 44556766666654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=2.7e-06 Score=69.14 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC--C--CCCceEEEecccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE--A--IPPADAVLIKCVL 268 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~--~~~~D~i~~~~vl 268 (365)
.+.+|||++||+|.++++.+.+... +++.+|. +..++.+++ ..+++++.+|.++ . ...||+|++.--.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 3579999999999999998888543 8999998 777777664 5688999999876 2 2259999996543
Q ss_pred ccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 017835 269 HNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIK 302 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~ 302 (365)
. .....+++..+.+ .|+| +.++++|..
T Consensus 122 ~---~~~~~~~l~~l~~~~~L~~----~~iIiiE~~ 150 (183)
T d2fpoa1 122 R---RGLLEETINLLEDNGWLAD----EALIYVESE 150 (183)
T ss_dssp S---TTTHHHHHHHHHHTTCEEE----EEEEEEEEE
T ss_pred c---cchHHHHHHHHHHCCCCCC----CeEEEEEec
Confidence 2 2233456666655 5888 456666653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.19 E-value=1.5e-06 Score=75.33 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=72.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------------CCCeEEEeCCCCC---CCCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------------NGNLKYVGGNMFE---AIPP 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~---~~~~ 258 (365)
.+.++||.||+|.|..+..+++ +|..+++.+|+ |.+++.+++ .+|++++.+|... ....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 5678999999999999999887 45678999999 888888763 4789999999876 2346
Q ss_pred ceEEEeccccccCChhH---HHHHHHHHHHhcccCCCCcEEEEE
Q 017835 259 ADAVLIKCVLHNWNDEE---CVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~---~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
||+|++-..- ...... ..++++.+++.|+| ||.+++.
T Consensus 150 yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 189 (276)
T ss_dssp EEEEEEECCC-CC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCC---CceEEEe
Confidence 9999874332 222211 25789999999999 7766654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.18 E-value=9.6e-07 Score=75.13 Aligned_cols=90 Identities=14% Similarity=0.295 Sum_probs=70.1
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC-c
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP-A 259 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~-~ 259 (365)
...+++.+. ..+..+|||||||+|.++..|++. ..+++++|. +.+++.+++ ..+++++.+|+.+ +++. .
T Consensus 18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence 456677676 778899999999999999999998 458899998 666776664 4689999999998 6663 5
Q ss_pred eEEEeccccccCChhHHHHHH
Q 017835 260 DAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 260 D~i~~~~vlh~~~~~~~~~~L 280 (365)
+..++++.-+|++.+-..+++
T Consensus 94 ~~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 94 RYKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEEECCSSSCHHHHHHHH
T ss_pred eeeEeeeeehhhhHHHHHHHh
Confidence 556667888888876444444
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=3.9e-06 Score=69.29 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=71.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC--CCCceEEEecccccc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA--IPPADAVLIKCVLHN 270 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~--~~~~D~i~~~~vlh~ 270 (365)
+..+|+|||+|.|.-+.-++-.+|+.+++.+|. ..-+...+. ..++++++....+- ...||+|++..+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 346999999999999999999999999999997 433333332 56899999988873 3369999887764
Q ss_pred CChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 271 WNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 271 ~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
+ ...++.-+...+++ +|++++..
T Consensus 143 -~---~~~ll~~~~~~l~~---~g~~~~~K 165 (207)
T d1jsxa_ 143 -S---LNDMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp -S---HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred -C---HHHHHHHHHHhcCC---CcEEEEEC
Confidence 2 25678888888999 89888865
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.17 E-value=2.9e-06 Score=74.30 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCCC-------CCCceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEA-------IPPADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~-------~~~~D~ 261 (365)
...+.+|||+.||+|.++..++.. +.+++.+|. +..++.+++ ..+++++++|+++- -..||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 355789999999999999988876 569999999 888888874 34799999999872 125999
Q ss_pred EEec---cccc----cCC-hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 262 VLIK---CVLH----NWN-DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 262 i~~~---~vlh----~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
|++- ..-. .|. ......+++.+.++|+| ||.+++...
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~ 252 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTA 252 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEec
Confidence 9983 1111 121 12334567788889999 777666554
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=2.1e-06 Score=74.24 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=74.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CC-CCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AI-PPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~-~~~D~i~ 263 (365)
.+.++||-||+|.|..+..+++..+..+++.+|+ +.+++.+++ ..|++++.+|... .. ..||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 5568999999999999999998877789999999 888888764 5799999999877 22 3599998
Q ss_pred eccccccCChh--HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDE--ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~--~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+-..-..-+.. -..++++.+++.|+| ||.++..
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCC---CceEEEe
Confidence 75321110000 125789999999999 6766654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=1.5e-06 Score=73.11 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=75.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC----------CCC
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA----------IPP 258 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~----------~~~ 258 (365)
..+.++|||||+++|.-+..+++..| +.+++.+|. +...+.|++ .++|+++.+|..+. ...
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 45689999999999999999999886 679999998 777777664 57899999998762 125
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
||+|++-. ....-...+..+.+.|+| ||. +|+|.++
T Consensus 137 fD~iFiDa-----~k~~y~~~~e~~~~ll~~---gGi-ii~DNvl 172 (227)
T d1susa1 137 YDFIFVDA-----DKDNYLNYHKRLIDLVKV---GGV-IGYDNTL 172 (227)
T ss_dssp BSEEEECS-----CSTTHHHHHHHHHHHBCT---TCC-EEEETTT
T ss_pred eeEEEecc-----chhhhHHHHHHHHhhcCC---CcE-EEEccCC
Confidence 99998843 223456788999999999 554 5555443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2e-06 Score=74.75 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=73.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CCC-CceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AIP-PADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~~-~~D~i~ 263 (365)
+..++||-||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... ..+ .||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 5678999999999999999998777889999999 889888864 6899999999876 223 599999
Q ss_pred eccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+-. .+..... -..++++.+++.|+| ||.+++.
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 191 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ 191 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCC---CCeEEEe
Confidence 853 2211111 124679999999999 6766654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.11 E-value=2.5e-06 Score=74.76 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=72.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---C-CCCceEEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---A-IPPADAVL 263 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~-~~~~D~i~ 263 (365)
...++||-||+|.|..+..+++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+ . ...||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 5678999999999999999998777679999999 888888764 5799999999887 2 23599999
Q ss_pred eccccccCC--hhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 264 IKCVLHNWN--DEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 264 ~~~vlh~~~--~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
+-..--.-+ .--..++++.+++.|+| ||.++..
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~q 219 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQ 219 (312)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCC---CcEEEEe
Confidence 853221101 11236789999999999 6766664
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.07 E-value=5.3e-06 Score=72.25 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=75.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----------CCCeEEEeCCCCC---CCC--CceEE
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----------NGNLKYVGGNMFE---AIP--PADAV 262 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~~--~~D~i 262 (365)
++.++||=||+|.|..+..+++..|-.+++.+|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 5678999999999999999999777778999999 888888764 6899999999776 222 59999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 263 LIKCVLHNWNDE---ECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 263 ~~~~vlh~~~~~---~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
++-..- ..... -..++++.+++.|+| ||.+++.-
T Consensus 159 i~D~~d-p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSD-PIGPAKELFEKPFFQSVARALRP---GGVVCTQA 195 (290)
T ss_dssp EECCCC-TTSGGGGGGSHHHHHHHHHHEEE---EEEEEEEC
T ss_pred EEcCCC-CCCcchhhCCHHHHHHHHHhcCC---CcEEEEec
Confidence 974321 11111 136789999999999 67666643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.07 E-value=4.8e-06 Score=73.57 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=71.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCCC------CC-CceE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFEA------IP-PADA 261 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~------~~-~~D~ 261 (365)
..++.+|||+.||+|.+++.++... ..+++++|. +..++.+++ ..+++++.+|+++. .. .||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3467899999999999998877642 347999999 777777764 36899999999862 12 4999
Q ss_pred EEecccc------ccCC-hhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 262 VLIKCVL------HNWN-DEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 262 i~~~~vl------h~~~-~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
|++---- .-+. ...-.++++.+.+.|+| ||.|++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p---gG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 9984211 0011 11235789999999999 77777644
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.99 E-value=2e-05 Score=66.20 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=86.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcc---c---CCCeEEEeCCCCC-----CC-CCceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLK---S---NGNLKYVGGNMFE-----AI-PPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~~i~~~~~d~~~-----~~-~~~D~i~~ 264 (365)
.....+|+|||+|.|.-++-|+-.+|+.+++.+|. ..-+...+ . -.++.++...+.. +. ..||+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 34567999999999999999999999999999997 43333322 1 5788888876643 12 25999999
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHhc
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFEA 344 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 344 (365)
..+- + ...++.-+...+++ ||++++....... -..++.++.+...
T Consensus 148 RAva---~---l~~ll~~~~~~l~~---~g~~i~~KG~~~~--------------------------~El~~a~~~~~~~ 192 (239)
T d1xdza_ 148 RAVA---R---LSVLSELCLPLVKK---NGLFVALKAASAE--------------------------EELNAGKKAITTL 192 (239)
T ss_dssp ECCS---C---HHHHHHHHGGGEEE---EEEEEEEECC-CH--------------------------HHHHHHHHHHHHT
T ss_pred hhhh---C---HHHHHHHHhhhccc---CCEEEEECCCChH--------------------------HHHHHHHHHHHHc
Confidence 8664 2 25678888899999 8988886531100 0234456667788
Q ss_pred CCccceEEEc
Q 017835 345 GFSDYKITDV 354 (365)
Q Consensus 345 Gf~~~~~~~~ 354 (365)
|++..++...
T Consensus 193 ~~~~~~v~~~ 202 (239)
T d1xdza_ 193 GGELENIHSF 202 (239)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 8887766544
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.92 E-value=1.3e-05 Score=64.77 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCCC-------CCCceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFEA-------IPPADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-------~~~~D~i~~ 264 (365)
.+.+|||+.||+|.++.+.+.+.. .+++.+|. +.+++.+++ ..+++++.+|.++- ...||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 568999999999999999998853 37999998 777777664 45899999998761 125999988
Q ss_pred ccccccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 017835 265 KCVLHNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~~ 303 (365)
---.+ .....++|..+.+ .|+| +| ++++|...
T Consensus 120 DPPY~---~~~~~~~l~~i~~~~~L~~---~g-iIi~E~~~ 153 (182)
T d2fhpa1 120 DPPYA---KQEIVSQLEKMLERQLLTN---EA-VIVCETDK 153 (182)
T ss_dssp CCCGG---GCCHHHHHHHHHHTTCEEE---EE-EEEEEEET
T ss_pred chhhh---hhHHHHHHHHHHHCCCCCC---CE-EEEEEcCC
Confidence 54322 2223567777754 6898 44 66677643
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.90 E-value=4.6e-05 Score=61.33 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=81.6
Q ss_pred hHHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC-C-------
Q 017835 187 SSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE-A------- 255 (365)
Q Consensus 187 ~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~------- 255 (365)
..++++.+. ..++..++|..+|.|+++..+++. +.+++++|. |.++..++. ..++.++.+++.+ .
T Consensus 7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 355666665 678899999999999999999997 569999999 888888775 6799999998876 1
Q ss_pred CCCceEEEecccc-----ccCCh--hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 256 IPPADAVLIKCVL-----HNWND--EECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 256 ~~~~D~i~~~~vl-----h~~~~--~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
...+|.|++-.-+ .+-.. ......|....+.|+| ||+++++.+.
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~fh 133 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAFH 133 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEECS
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEecc
Confidence 2358888774222 21111 1234578888999999 8999988763
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.88 E-value=1.8e-05 Score=70.34 Aligned_cols=101 Identities=11% Similarity=0.153 Sum_probs=73.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-----CCCCeEEEeec-hHHHHhccc-----CCCeEEEeCCCCCCC--CCceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-----FPHIECTVFDQ-PHVVADLKS-----NGNLKYVGGNMFEAI--PPADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--~~~D~i~~ 264 (365)
.....+|+|.+||+|.++..+.++ .+..+++|+|+ +.++..++. .....+..+|..... ..||+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 345679999999999999988764 34557899999 777776653 567778888887743 35999999
Q ss_pred ccccccCC-hhH---------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 265 KCVLHNWN-DEE---------------CVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 265 ~~vlh~~~-~~~---------------~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.-...... ++. -..++.++.+.|+| ||++.++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEec
Confidence 75542211 111 12468899999999 898877654
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.78 E-value=5.5e-06 Score=56.60 Aligned_cols=57 Identities=18% Similarity=0.360 Sum_probs=48.1
Q ss_pred cCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 42 LGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 42 lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|++.+..++.|+|+.|||+.+|+ +...+.|+|..|+..|+++++. ++.|++++..
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~---~~st~~rll~tL~~~g~l~~~~------~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCCEeecHHH
Confidence 3456667665579999999999999 5789999999999999999985 6889998744
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00012 Score=58.84 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=72.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeechHHHHhcccCCCeEEEeCCCCCC-----------
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQPHVVADLKSNGNLKYVGGNMFEA----------- 255 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~----------- 255 (365)
.++.+++. .++++.+|||+||++|.++..+.+. .+..+++++|+.++ ....++.++.+|+.+.
T Consensus 11 ~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 11 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp HHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred HHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhcc
Confidence 34556665 4688899999999999999998876 45578999998432 2357889999999872
Q ss_pred CCCceEEEeccccccCC----h-----hHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 256 IPPADAVLIKCVLHNWN----D-----EECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 256 ~~~~D~i~~~~vlh~~~----~-----~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
...+|+|++-....--. | +-+...|.-+.+.|++ ||.+++
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~ 134 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVV 134 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEE
Confidence 12499998864432111 1 1233556667789999 777665
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.66 E-value=0.00011 Score=60.84 Aligned_cols=98 Identities=7% Similarity=-0.009 Sum_probs=68.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHHhcccCCCeEEEeCCCCCCC--CCceEEEeccccccC--
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPH-IECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAI--PPADAVLIKCVLHNW-- 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~--~~~D~i~~~~vlh~~-- 271 (365)
...+.+|||.|||+|.++..+.+..+. .++.++|+ +..... ..+..+..+|++... ..||+++........
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---~~~~~~~~~~~~~~~~~~~fd~ii~npP~~~~~~ 93 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---PPWAEGILADFLLWEPGEAFDLILGNPPYGIVGE 93 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---CTTEEEEESCGGGCCCSSCEEEEEECCCCCCBSC
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---cccceeeeeehhccccccccceecccCccccccc
Confidence 456789999999999999998877554 57999998 443332 345677888888743 359999987443211
Q ss_pred -Ch------h------------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 272 -ND------E------------------ECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 272 -~~------~------------------~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.. . -...++.++.+.|+| ||++.++-+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~p 145 (223)
T d2ih2a1 94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 145 (223)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEEe
Confidence 00 0 123567788899999 899887654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00035 Score=59.86 Aligned_cols=89 Identities=18% Similarity=0.338 Sum_probs=62.6
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEEEeCCCCC-CCCC
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKYVGGNMFE-AIPP 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~~~ 258 (365)
..+++... ..+..+|||||+|.|.++..|++.. .++++++. +..++..++ ..+++++.+|+.+ +.+.
T Consensus 11 ~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~ 86 (278)
T d1zq9a1 11 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 86 (278)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence 44555555 6678899999999999999999985 47888877 666666553 3689999999998 5666
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHH
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKK 285 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~ 285 (365)
.+.++ .+.-++++ ..++.++..
T Consensus 87 ~~~vV-~NLPY~Is----s~il~~~~~ 108 (278)
T d1zq9a1 87 FDTCV-ANLPYQIS----SPFVFKLLL 108 (278)
T ss_dssp CSEEE-EECCGGGH----HHHHHHHHH
T ss_pred hhhhh-cchHHHHH----HHHHHHHHh
Confidence 55544 34334443 445555443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.40 E-value=0.00023 Score=59.38 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=63.5
Q ss_pred CCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHHhcc-cCCCeEEEeCCCCCC-----CC--CceEEEecc
Q 017835 200 GLNTLVDVGGGTGTLASAIAKK----FPHIECTVFDQ-PHVVADLK-SNGNLKYVGGNMFEA-----IP--PADAVLIKC 266 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~-~~~~i~~~~~d~~~~-----~~--~~D~i~~~~ 266 (365)
.+.+|||||++.|.-+..++.. .++.+++++|+ +....... ...+|+++.+|..++ .. .+|+|++-.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 3579999999999877665543 46789999998 44333322 378999999997662 12 378877643
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
. |.. ... ..-+ +....|+| ||.++|-|.
T Consensus 160 ~-H~~-~~v-~~~~-~~~~lLk~---GG~iIveD~ 187 (232)
T d2bm8a1 160 A-HAN-TFN-IMKW-AVDHLLEE---GDYFIIEDM 187 (232)
T ss_dssp S-CSS-HHH-HHHH-HHHHTCCT---TCEEEECSC
T ss_pred C-cch-HHH-HHHH-HHhcccCc---CCEEEEEcC
Confidence 3 543 222 3334 46688999 777777664
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=5.8e-05 Score=64.05 Aligned_cols=83 Identities=12% Similarity=0.203 Sum_probs=60.1
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc----CCCeEEEeCCCCC-CCCC---
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS----NGNLKYVGGNMFE-AIPP--- 258 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~~--- 258 (365)
..+++... ..++..|||||||.|.++..|++.. .+++++|+ +..++..+. .++++++.+|+.+ +.+.
T Consensus 11 ~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 11 DSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccccccc
Confidence 44555555 6778999999999999999999874 57888887 777666654 4789999999987 3321
Q ss_pred ---ceEEEeccccccCChh
Q 017835 259 ---ADAVLIKCVLHNWNDE 274 (365)
Q Consensus 259 ---~D~i~~~~vlh~~~~~ 274 (365)
--+.++.+.-++++.+
T Consensus 87 ~~~~~~~vvgNlPY~Iss~ 105 (252)
T d1qyra_ 87 KMGQPLRVFGNLPYNISTP 105 (252)
T ss_dssp HHTSCEEEEEECCTTTHHH
T ss_pred ccCCCeEEEecchHHHHHH
Confidence 2245556666666544
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.28 E-value=0.00048 Score=55.31 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc--------CCCeEEEeCCCCC----C--CCCceEEEe
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS--------NGNLKYVGGNMFE----A--IPPADAVLI 264 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~----~--~~~~D~i~~ 264 (365)
.+.+|||+-||||.++.+.+.+... +++.+|. ...+..+++ .....+...|..+ . .+.||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 4569999999999999999988533 8999998 666665553 3356667776544 1 225999988
Q ss_pred ccccccCChhHHHHHHHHHHH--hcccCCCCcEEEEEeeecC
Q 017835 265 KCVLHNWNDEECVKILKNCKK--AIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~--~L~p~~~gG~lli~e~~~~ 304 (365)
---.. . ....++|..+.+ .|++ +.++++|....
T Consensus 122 DPPY~-~--~~~~~~l~~l~~~~~L~~----~~liiiE~~~~ 156 (183)
T d2ifta1 122 DPPFH-F--NLAEQAISLLCENNWLKP----NALIYVETEKD 156 (183)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEE----EEEEEEEEESS
T ss_pred chhHh-h--hhHHHHHHHHHHhCCcCC----CcEEEEEecCC
Confidence 54432 2 234567777765 6888 56777776443
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.24 E-value=0.00066 Score=56.38 Aligned_cols=106 Identities=12% Similarity=0.028 Sum_probs=65.2
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHH---hccc---CCCeEEEeCCCCCC-CC-Cc
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVA---DLKS---NGNLKYVGGNMFEA-IP-PA 259 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~---~a~~---~~~i~~~~~d~~~~-~~-~~ 259 (365)
.++.+++. +.+..+|+|+|||.|..+..++.+.+...+.++++..-.. .... -+-+++...+.... .+ .+
T Consensus 56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 34555554 6778899999999999999999887666777776511110 1111 12345554433332 23 59
Q ss_pred eEEEeccccccCC----hhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 260 DAVLIKCVLHNWN----DEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 260 D~i~~~~vlh~~~----~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
|+|+|--.-+.-+ .....++|.-+.+.|+| ||.+++
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv 173 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 173 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHccc---CCEEEE
Confidence 9999864332111 12334677778899999 786544
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.19 E-value=0.0015 Score=56.50 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=74.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhccc---------CCCeEEEeCCCCCCC----------CC-
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLKS---------NGNLKYVGGNMFEAI----------PP- 258 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~~- 258 (365)
.+...|+.+|||-=.....+ ...++++++-+|.|.+++.-++ ..+..++..|+.+++ ++
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45678888999998887766 3457889999999998875432 456678888887632 12
Q ss_pred ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 259 ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 259 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.-++++-.++++++.+++.++|+.+.+...| |+. +++|..
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~-l~~d~~ 206 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSR-IAVETS 206 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCE-EEEECC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CCE-EEEEec
Confidence 4567777899999999999999999999988 555 445544
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0021 Score=57.08 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=62.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCCC-------CCceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEAI-------PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~-------~~~D~i~ 263 (365)
..+..+|||+-||+|.++..|++. ..+++++|. +..++.|+. ..+++++.+|..+.. ..+|+|+
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 457789999999999999999886 458999998 888887774 578999999987732 2489988
Q ss_pred eccccccCChhHHHHHHHHHHHhccc
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAI 289 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p 289 (365)
+- =|..-+.+.++.+.+. +|
T Consensus 288 lD-----PPR~G~~~~~~~l~~~-~~ 307 (358)
T d1uwva2 288 LD-----PARAGAAGVMQQIIKL-EP 307 (358)
T ss_dssp EC-----CCTTCCHHHHHHHHHH-CC
T ss_pred eC-----CCCccHHHHHHHHHHc-CC
Confidence 73 1222233456666554 56
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.80 E-value=0.0017 Score=59.18 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=73.9
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHCC-------------CCeEEEeec-hHHHHhccc--------CCCe
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKFP-------------HIECTVFDQ-PHVVADLKS--------NGNL 245 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~--------~~~i 245 (365)
..+++.++ .....+|+|-.||+|.++..+.+... .....++|. +.+...++. ....
T Consensus 152 ~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 152 QAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred Hhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 33444444 45678999999999999988876532 134788888 666655542 3456
Q ss_pred EEEeCCCCCCCC--CceEEEeccccccCC---------------hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 246 KYVGGNMFEAIP--PADAVLIKCVLHNWN---------------DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 246 ~~~~~d~~~~~~--~~D~i~~~~vlh~~~---------------~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.+..+|.+...+ .||+|++.--...-. ...-..++.++.+.|+| ||++.++-+
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~p 299 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 299 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEec
Confidence 778888887443 599999975542110 01124589999999999 898887643
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.013 Score=51.17 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=84.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHHhcc---------------------------cCCCeEEEeCC
Q 017835 199 EGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQPHVVADLK---------------------------SNGNLKYVGGN 251 (365)
Q Consensus 199 ~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------------------------~~~~i~~~~~d 251 (365)
.+...|+-+|||.=.....+...+|+++++-+|.|++++.-+ ..++..++..|
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 445689999999999888998889999999999988877432 14678899999
Q ss_pred CCCC-C----------CC-ceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 017835 252 MFEA-I----------PP-ADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESE 306 (365)
Q Consensus 252 ~~~~-~----------~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~ 306 (365)
+.+. . ++ .-++++-.||.+++.+++.++|+.+.+..+. +.+++.|++.+..
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~~ 237 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGSQ 237 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCCS
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCCC
Confidence 9871 0 12 5578888999999999999999999998874 8899999986543
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.55 E-value=0.00057 Score=48.72 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=48.8
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
++|.--.++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++..... |..-.|++++
T Consensus 18 kaL~~p~Rl~Il~~L~~--~~~~v~ela~~l~i---s~stvS~HL~~L~~aglV~~~r~---G~~~~Y~l~~ 81 (98)
T d1r1ta_ 18 AVLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRKQ---GRHVYYQLQD 81 (98)
T ss_dssp HHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESS
T ss_pred HHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEECh
Confidence 34444556666777764 79999999999999 57999999999999999998762 1123477664
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0016 Score=42.15 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=43.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecC
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILT 104 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t 104 (365)
++.|++.|.+ ++..|.+|||+.+|+ ....+++-++.|...|+..+... ...|++.
T Consensus 7 ~~~iL~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~i~~L~~~G~~I~~~~-----g~GY~L~ 61 (63)
T d1biaa1 7 PLKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-----GKGYSLP 61 (63)
T ss_dssp HHHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-----TTEEECS
T ss_pred HHHHHHHHHH-CCcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCcEEEeC-----CCeEEeC
Confidence 4556777775 478999999999999 57999999999999998554431 3468875
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.24 E-value=0.00075 Score=47.64 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 33 SMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 33 ~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
+++|.--.++.|+..|.. ++.++.||++.+|+ ....+.+.|+.|...|++..... |..-.|+++.
T Consensus 12 fkaL~d~~Rl~Il~~L~~--~~~~v~el~~~l~~---s~~~vS~HL~~L~~~glv~~~r~---G~~~~Y~l~~ 76 (94)
T d1r1ua_ 12 FKALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKRQ---GQSMIYSLDD 76 (94)
T ss_dssp HHHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEESS
T ss_pred HHHhCCHHHHHHHHHHHc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCceEEEEE---CCEEEEEECc
Confidence 345555566777777775 79999999999999 57899999999999999998762 1123488774
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.01 Score=51.64 Aligned_cols=55 Identities=11% Similarity=0.222 Sum_probs=43.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---CCCeEEEeCCCCC
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---NGNLKYVGGNMFE 254 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~ 254 (365)
...+|||||.|.|.++..|++..---+++++|. +...+..++ .++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999999999998742237888887 555555543 6789999999875
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.14 E-value=0.00062 Score=48.71 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=50.3
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
-.++.|+..|... ++.|+.+||+.+++ ....+.+.|+.|...|+++......|+..-.|++|+.++.
T Consensus 16 p~r~~IL~~L~~~-~~~~~~eLa~~l~i---s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~ 82 (100)
T d1ub9a_ 16 PVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred HHHHHHHHHhccC-CCeeHHHHHHHHhh---ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHH
Confidence 3356666777542 78999999999999 6799999999999999999764221211224999998863
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=95.98 E-value=0.0016 Score=47.18 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
.+++|.--.++.|+..|.. +++.++.+|++.+|+ ....+.+.|+.|...|++..... |..-.|++++
T Consensus 24 ~~kaLadp~Rl~Il~~L~~-~~~~~v~ela~~l~~---s~s~vS~HL~~L~~aGlv~~~r~---G~~~~Y~l~~ 90 (108)
T d1u2wa1 24 ILKAIADENRAKITYALCQ-DEELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE---GKLALYSLGD 90 (108)
T ss_dssp HHHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CCEEEESC
T ss_pred HHHHhCCHHHHHHHHHHHh-CCCccHHHHHHHHcc---ChhHHHHHHHHHHHCCeeEEEEE---CCEEEEEECH
Confidence 4567777778889888854 278999999999999 57999999999999999998762 2233587765
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.0033 Score=40.84 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=44.2
Q ss_pred HHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCc-eeccccCCCCccceEecCc
Q 017835 39 AIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGF-FALQKTSENEQEEGYILTS 105 (365)
Q Consensus 39 a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~~y~~t~ 105 (365)
--...|++.|....+++|+++||+.+++ ..+-++|-|..|.+.|+ +..+ .+.|.+.+
T Consensus 7 eR~~~Il~~L~~~~~~vs~~~La~~l~V---S~~TI~rdi~~L~~~G~~I~~~-------~gGY~L~~ 64 (65)
T d1j5ya1 7 ERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-------PRGYVLAG 64 (65)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-------TTEEECCT
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEEe-------CCCEEeCC
Confidence 3345567777654468999999999999 57999999999999998 4443 46888753
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.85 E-value=0.064 Score=46.18 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=70.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHHhccc------CCCeEEEeCCCCC-C--CCCceEEEec-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFP-HIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFE-A--IPPADAVLIK- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~~~~D~i~~~- 265 (365)
..++.+|||+-+|.|.=+..++.... +..++..|. +.-+...+. ..++.+...|... + ...||.|++-
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 56789999999999999888888754 567889998 555554442 5677777777665 2 2359999872
Q ss_pred -----ccc-------ccCChh-------HHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 -----CVL-------HNWNDE-------ECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 -----~vl-------h~~~~~-------~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.++ ..+..+ .-.++|+++.+.+|| ||+|+-......
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCSl~ 248 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSLE 248 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeeccCC
Confidence 122 112221 124788899999999 787666555443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.65 E-value=0.031 Score=43.35 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=59.1
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC-CCCCceEEEeccccccCChhHHHH
Q 017835 203 TLVDVGGGT--GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE-AIPPADAVLIKCVLHNWNDEECVK 278 (365)
Q Consensus 203 ~iLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~~ 278 (365)
+|+=||||. |.++..|.+..+..+++++|. ++.++.+++...+.....+... .....|+|+++- +.....+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 577899986 345666777777889999999 8888888765544433434333 234689998754 5556788
Q ss_pred HHHHHHHhccc
Q 017835 279 ILKNCKKAIAI 289 (365)
Q Consensus 279 ~L~~i~~~L~p 289 (365)
+++++.+.+++
T Consensus 78 vl~~l~~~~~~ 88 (171)
T d2g5ca2 78 IAKKLSYILSE 88 (171)
T ss_dssp HHHHHHHHSCT
T ss_pred hhhhhhccccc
Confidence 99999999988
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.43 E-value=0.26 Score=42.92 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=88.9
Q ss_pred CCCeEEEecCCccHHHH-------HHH-HH--------CCCCeEEEeechH-----HHHhccc----CC--CeEEEeCCC
Q 017835 200 GLNTLVDVGGGTGTLAS-------AIA-KK--------FPHIECTVFDQPH-----VVADLKS----NG--NLKYVGGNM 252 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~-------~l~-~~--------~p~~~~~~~D~~~-----~~~~a~~----~~--~i~~~~~d~ 252 (365)
+.-+|.|+||.+|..+. ... +. -|..++..-|+|. ....... .. -+.-++|.|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 44689999999998873 222 11 2566777778753 2222211 11 234578899
Q ss_pred CCC-CC--CceEEEeccccccCCh-------------------h------------HHHHHHHHHHHhcccCCCCcEEEE
Q 017835 253 FEA-IP--PADAVLIKCVLHNWND-------------------E------------ECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 253 ~~~-~~--~~D~i~~~~vlh~~~~-------------------~------------~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
... +| ..+++++++.||-++. + +...+|+.=++=|.| ||++++
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mvl 207 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEEE
Confidence 884 55 5899999999986542 1 223467766678899 999999
Q ss_pred EeeecCCCccCcc-----ch-hhhhhhhhhhhhccCc--------c--ccCHHHHHHHHHhcC-CccceEE
Q 017835 299 IDIKMESEKADYK-----TT-ETQLFMDMLMMVLVKG--------E--ERNEKEWAKLFFEAG-FSDYKIT 352 (365)
Q Consensus 299 ~e~~~~~~~~~~~-----~~-~~~~~~d~~~~~~~~~--------~--~~t~~e~~~ll~~aG-f~~~~~~ 352 (365)
+-...++...... +. ....+.++........ + .++.+|+++.+++.| |.+.++.
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e 278 (359)
T d1m6ex_ 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence 8877655432210 00 0112223322221111 1 248999999999876 5555443
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=95.39 E-value=0.0088 Score=45.35 Aligned_cols=64 Identities=11% Similarity=0.244 Sum_probs=49.2
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|... +|.|+.+||+.+++ +...+.+.++.|...|++++....+|+..-.+.+|+.|+.+.
T Consensus 40 iL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~ 103 (143)
T d1s3ja_ 40 VLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 103 (143)
T ss_dssp HHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHH
Confidence 45556543 68999999999999 679999999999999999987633222123489999887544
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.38 E-value=0.012 Score=44.39 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=50.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++-++..|... ++.|+.+||+.+++ +...+.+.++.|+..|++++....+|+..-.+.+|+.|..+.
T Consensus 38 q~~vL~~l~~~-~~~t~~~la~~l~~---~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~ 104 (141)
T d1lnwa_ 38 DVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 104 (141)
T ss_dssp HHHHHHHHHSS-TTCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCc---cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHH
Confidence 34445555543 67999999999999 689999999999999999987643333223488888887443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.077 Score=44.94 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=69.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---CC-CceEEEec-
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---IP-PADAVLIK- 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~~-~~D~i~~~- 265 (365)
..++.+|||+-+|.|.=+..++....+.+++..|. +.-+...++ ...+.....|.... .+ .||.|++-
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56788999999999999999999888888999997 444443332 34455555554431 22 49999872
Q ss_pred -----ccc-------ccCChhH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 -----CVL-------HNWNDEE-------CVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 -----~vl-------h~~~~~~-------~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
.++ ..|+..+ -.++|+++.+.|+| ||+|+-......
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS~~ 234 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 234 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeecCc
Confidence 222 2222211 25788889999999 777776555443
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.10 E-value=0.0068 Score=48.50 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCC-CC-ccceEecCccc
Q 017835 32 NSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSE-NE-QEEGYILTSAS 107 (365)
Q Consensus 32 ~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~~-~~~~y~~t~~~ 107 (365)
..++|.--.+..|+..|.. +|.|+.|||+.+|+ ++..+.+.|+.|...|+++...... .| ....|.+|..+
T Consensus 12 ~~~~l~~p~R~~Il~~L~~--~~~s~~ela~~lg~---s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~ 84 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV 84 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence 4566666678888888875 89999999999999 5789999999999999997643210 00 01248877654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.06 E-value=0.04 Score=48.74 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=68.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------------CCCeEEEeCCCCC---
Q 017835 200 GLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------------NGNLKYVGGNMFE--- 254 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------------~~~i~~~~~d~~~--- 254 (365)
+..+|||..||+|..++..+...+..+++..|+ +..++.+++ ...+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 457999999999999999888877778999999 888877764 1235556666543
Q ss_pred CCC-CceEEEeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 255 AIP-PADAVLIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 255 ~~~-~~D~i~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
... .||+|.+-- +..+ ..+|..+.++++. ||.|.|.-.
T Consensus 125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~---~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKR---RGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEE---EEEEEEEEC
T ss_pred hhcCcCCcccCCC----CCCc--HHHHHHHHHHhcc---CCEEEEEec
Confidence 223 499988753 3333 5689999999998 677777643
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=94.97 E-value=0.0076 Score=41.35 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+++|+.+||+.+++ ++..+.++|+.|...|++.+.. |+..-.|.+|+.+..+
T Consensus 20 ~~lt~~eLa~~l~i---~~~~vs~~l~~Le~~GlV~r~~---D~R~~~i~LT~~G~~~ 71 (85)
T d3ctaa1 20 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTV---TKRGQILNITEKGLDV 71 (85)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeec---ccccccceECHHHHHH
Confidence 68999999999999 6799999999999999999864 1112348889888743
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.017 Score=53.78 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=68.3
Q ss_pred HHHHhhccccccCCCeEEEecCCccHHHHHHHHHC----C--------------CCeEEEeec-hHHHHhccc-------
Q 017835 188 SALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF----P--------------HIECTVFDQ-PHVVADLKS------- 241 (365)
Q Consensus 188 ~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~----p--------------~~~~~~~D~-~~~~~~a~~------- 241 (365)
..+++.+. ..++.+|+|-.||+|.++....+.. . ...+.++|. +.+...++.
T Consensus 154 ~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 154 KTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred Hhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 33444444 3567799999999999998776542 1 124788888 666655542
Q ss_pred ----CCCeEEEeCCCCC----CCCCceEEEecccccc-C-C----------hhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 242 ----NGNLKYVGGNMFE----AIPPADAVLIKCVLHN-W-N----------DEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 242 ----~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~-~-~----------~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
...-.+..++.+. ..+.||+|+++--+.. + . ...-..++.++.+.|+| ||++.++-+
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---gGr~aiIlP 308 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 308 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc---cCcEEEEEe
Confidence 1122345556555 1345999998644321 1 0 01114589999999999 899888654
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.70 E-value=0.007 Score=48.64 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=46.9
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCC-CCcc-ceEecCccch
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSE-NEQE-EGYILTSASK 108 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~~~~-~~y~~t~~~~ 108 (365)
.+..|+..|.. +|.|+.+||+.+|+ .+..+++.|+.|...|+++...... .|.. ..|.++..+.
T Consensus 16 ~R~~Il~~L~~--~~~~~~ela~~l~~---s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 16 TRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 45555666665 79999999999999 5799999999999999998643110 0101 2588887654
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=94.56 E-value=0.014 Score=43.20 Aligned_cols=47 Identities=6% Similarity=0.134 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
++.|.++||+.+++ ++..++++|+.|...|+++-.+. ..|.| ++...
T Consensus 17 ~~~ss~~IA~~~~~---~~~~v~kIl~~L~~aglV~s~rG----~~GGy-Lar~p 63 (127)
T d1xd7a_ 17 EKTSSEIIADSVNT---NPVVVRRMISLLKKADILTSRAG----VPGAS-LKKDP 63 (127)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCSS----SSSCE-ESSCG
T ss_pred CCCCHHHHHHHhCc---CHHHHHHHHHHHHHhCcccccCC----CCCcc-ccCCH
Confidence 68999999999999 57999999999999999997652 14556 66543
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=94.45 E-value=0.0091 Score=39.36 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=38.4
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|+..|... +++|..|||+.+|+ ....+.++++.|...|++.+.+
T Consensus 10 ~Il~~l~~~-g~~sr~eLa~~~gl---S~~Tv~~~l~~L~~~Glv~e~~ 54 (71)
T d1z05a1 10 RVYKLIDQK-GPISRIDLSKESEL---APASITKITRELIDAHLIHETT 54 (71)
T ss_dssp HHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 456666653 79999999999999 5799999999999999998754
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.38 E-value=0.013 Score=44.48 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=48.9
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|...++++|+.+||+.+++ +...+.++++-|...|++++....+|...-.+.+|+.|+.+.
T Consensus 36 q~~vL~~L~~~~g~~t~~~La~~~~~---~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~ 103 (145)
T d2hr3a1 36 QLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 103 (145)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence 44455555433368999999999999 679999999999999999987533222223589999887543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.36 E-value=0.3 Score=37.78 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=62.9
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC----------CCCceEEEec
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA----------IPPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~----------~~~~D~i~~~ 265 (365)
.+++.+||=+|||. |.++..+++.....+++..|. +.-.+.+++..--.++...-.+. ...+|+++-+
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 67889999999998 788888888876557888898 66677777632222222111111 1248888664
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKA-GKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~g-G~lli~e~ 301 (365)
-- . ...+....+.++| | |+++++-.
T Consensus 106 ~G-----~---~~~~~~a~~~~~~---g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AG-----T---AQTLKAAVDCTVL---GWGSCTVVGA 131 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCT---TTCEEEECCC
T ss_pred cc-----c---chHHHHHHHHhhc---CCeEEEecCC
Confidence 32 2 4568889999998 6 89988764
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=94.35 E-value=0.012 Score=37.67 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=38.9
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|+..|.+ +|+|-.|||+.+|+ ....+.++++.|.+.|++.+.+
T Consensus 3 ~Il~~i~~--~pisr~eLa~~~gl---s~~TVs~~v~~L~~~GlV~e~~ 46 (62)
T d2hoea1 3 RILKRIMK--SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEK 46 (62)
T ss_dssp CSHHHHHH--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHH--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC
Confidence 46677775 79999999999999 5789999999999999999865
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.29 E-value=0.1 Score=40.09 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=56.1
Q ss_pred eEEEecCC--ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCCCCCceEEEeccccccCChhHHHHH
Q 017835 203 TLVDVGGG--TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEAIPPADAVLIKCVLHNWNDEECVKI 279 (365)
Q Consensus 203 ~iLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 279 (365)
+|.=||+| .+.++..|.+. +.+++++|. ++..+.+++...+... .+..+...++|+|+++- +.....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIilav-----p~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLCT-----PIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEECS-----CHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhcccee-eeecccccccccccccC-----cHhhhhhh
Confidence 56678887 34455566554 678999998 7777777654333222 22223456799998743 56677899
Q ss_pred HHHHHHhcccCCCCcEEEE
Q 017835 280 LKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 280 L~~i~~~L~p~~~gG~lli 298 (365)
++++...+++ +.+++
T Consensus 74 l~~l~~~l~~----~~iv~ 88 (165)
T d2f1ka2 74 LEKLIPHLSP----TAIVT 88 (165)
T ss_dssp HHHHGGGSCT----TCEEE
T ss_pred hhhhhhhccc----cccee
Confidence 9999999987 55554
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.23 E-value=0.12 Score=40.94 Aligned_cols=103 Identities=22% Similarity=0.191 Sum_probs=67.0
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe---CCCCCC------CCCceEEEecc
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG---GNMFEA------IPPADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~~------~~~~D~i~~~~ 266 (365)
.+++.+||-+|||. |.++..+++.....+++++|. +.-++.+++..--.++. .|+.+. -..+|+++-.-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 68889999999998 667777787777778999998 77788877632222221 111110 12488887542
Q ss_pred cc------c-cCChhHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 017835 267 VL------H-NWNDEECVKILKNCKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 267 vl------h-~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~ 303 (365)
-. | ........+.|+.+.++++| ||++.++-...
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~ 143 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYV 143 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCC
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecC
Confidence 11 1 11111124679999999999 99999886533
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.16 E-value=0.008 Score=43.37 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.|+.+||+.+|+ +...+.+.|+-|...|++.+..
T Consensus 33 g~~t~~eia~~~~i---~~~~v~~~l~~L~~~GlV~r~~ 68 (109)
T d1sfxa_ 33 GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHhCC---CcchHHHHHHHHHhCCCEEEEe
Confidence 79999999999999 5799999999999999998753
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=94.03 E-value=0.021 Score=42.75 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=50.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.++..|... ++.|..+||+.+++ +...+.++++-|+..|++++....+|+..-.+.+|+.|..+.
T Consensus 36 q~~vL~~i~~~-~~~t~~~la~~l~~---~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~ 102 (136)
T d2bv6a1 36 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 102 (136)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHH
Confidence 34455566553 78999999999999 568899999999999999987643333223578898887443
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.02 E-value=0.014 Score=40.24 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=42.4
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+.+.-.|...+++ +.+.+...|+.|...|+++.. ++.|.+|+.|.-+.
T Consensus 18 g~~kT~i~~~aNL---s~~~~~kyl~~L~~~GLI~~~-------~~~Y~iT~kG~~~L 65 (90)
T d1r7ja_ 18 GSPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQE-------GKQYMLTKKGEELL 65 (90)
T ss_dssp CBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHH
T ss_pred CCCccHHHHHcCC---CHHHHHHHHHHHHHCCCeeec-------CCEEEECccHHHHH
Confidence 4578999999999 689999999999999999876 58999999998544
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=93.97 E-value=0.02 Score=42.72 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..+||+.+++ +...+.++++.|...|++.+.....|...-.+.+|+.++.+.
T Consensus 44 ~~it~~ela~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 99 (135)
T d3broa1 44 KEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 99 (135)
T ss_dssp SCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHHCc---CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence 57999999999999 679999999999999999987532222223599999887544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.96 E-value=0.39 Score=37.17 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=60.8
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCC-CeEEEeCCCC--C--------CCC-CceEEE
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNG-NLKYVGGNMF--E--------AIP-PADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~i~~~~~d~~--~--------~~~-~~D~i~ 263 (365)
.+++.+||-+|+|. |.++..+++...-.+++++|. +.-.+.+++.. ...+-..+-. + ..+ ++|+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 56788999999885 677888888763337999998 77777777632 2222121111 1 012 489887
Q ss_pred eccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 264 IKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 264 ~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
-.- .. ...++.+.+.++| ||+++++-..
T Consensus 106 d~v-----G~---~~~~~~a~~~l~~---~G~iv~~G~~ 133 (182)
T d1vj0a2 106 EAT-----GD---SRALLEGSELLRR---GGFYSVAGVA 133 (182)
T ss_dssp ECS-----SC---TTHHHHHHHHEEE---EEEEEECCCC
T ss_pred ecC-----Cc---hhHHHHHHHHhcC---CCEEEEEeec
Confidence 532 11 2347788899999 8999887643
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=93.95 E-value=0.021 Score=42.93 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.+.|.++||+.+++ ++..++++|+.|...|+++-.. | .|.|.+....
T Consensus 22 ~~vss~~IA~~~~i---~~~~l~kil~~L~~aGlv~S~r----G-~GG~~L~~~p 68 (138)
T d1ylfa1 22 SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR----G-PGGAGLLKDL 68 (138)
T ss_dssp GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCG
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec----C-CCCceecCCH
Confidence 58999999999999 5799999999999999999876 2 5778876533
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=93.94 E-value=0.0077 Score=45.51 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=51.7
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++-++..|... ++.|+.+||+.+++ +...+.+.++.|...|++++.....|...-..++|+.|+.+.
T Consensus 34 q~~iL~~l~~~-~~~t~~~La~~l~i---~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 100 (140)
T d2etha1 34 ELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 100 (140)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHH
Confidence 44466666654 78999999999999 679999999999999999987643332223589999887544
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=93.69 E-value=0.044 Score=35.08 Aligned_cols=36 Identities=14% Similarity=0.344 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|-++.|||+.+|+ ++..++.+|+.|+..|.+.+..
T Consensus 22 ~PP~vrdl~~~l~~---~e~~~~~lL~~l~~~G~lvkI~ 57 (64)
T d1lvaa3 22 QPPSFKEVAGSFNL---DPSELEELLHYLVREGVLVKIN 57 (64)
T ss_dssp SCCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEESS
T ss_pred CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 69999999999999 6899999999999999999986
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.63 E-value=0.78 Score=34.79 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=61.4
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-CCeEEEeCCCCCC-----------CC-CceEE
Q 017835 198 FEGLNTLVDVGGG-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-GNLKYVGGNMFEA-----------IP-PADAV 262 (365)
Q Consensus 198 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~-----------~~-~~D~i 262 (365)
.+++.+||-+||| .|.++..+++.. +++++++|. +.-.+.+++. ....+..-+...+ .+ .+|++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 6778899999988 566666677665 679999998 7777777762 2233322211111 12 37888
Q ss_pred EeccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 263 LIKCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 263 ~~~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
+-.-- . ...+..+.+.++| +|+++++-.
T Consensus 103 id~~g-----~---~~~~~~a~~~~~~---~G~iv~~G~ 130 (170)
T d1e3ja2 103 IDCSG-----N---EKCITIGINITRT---GGTLMLVGM 130 (170)
T ss_dssp EECSC-----C---HHHHHHHHHHSCT---TCEEEECSC
T ss_pred eecCC-----C---hHHHHHHHHHHhc---CCceEEEec
Confidence 65431 1 3567888899999 899998864
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.023 Score=37.21 Aligned_cols=45 Identities=9% Similarity=0.176 Sum_probs=38.4
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|+..|... +++|-.|||+.+|+ ....+.++++.|.+.|++.+.+
T Consensus 9 ~Il~~i~~~-g~~sr~eLa~~~gL---S~~Tvs~iv~~L~~~glv~e~g 53 (70)
T d1z6ra1 9 AVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 53 (70)
T ss_dssp HHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 356666654 89999999999999 5789999999999999998764
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=93.24 E-value=0.0097 Score=42.87 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+|+|+.+||+.+++ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~eLa~~~~i---~~~tvs~~l~~L~~~GlV~r~~ 70 (109)
T d2d1ha1 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---cHhHHHHHHHHHHHCCCEEEee
Confidence 78999999999999 6799999999999999999875
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=93.18 E-value=0.041 Score=45.60 Aligned_cols=75 Identities=21% Similarity=0.351 Sum_probs=52.7
Q ss_pred HHhhccccccC--CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc---------------CCCeEEEeCC
Q 017835 190 LIHKCKDVFEG--LNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS---------------NGNLKYVGGN 251 (365)
Q Consensus 190 ~~~~~~~~~~~--~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d 251 (365)
+.+.+. ++. ..+|||.-||.|..+..++.. ++++++++. |.+....+. ..|++++.+|
T Consensus 78 l~kA~g--l~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHhc--CCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 444454 333 348999999999999999988 589999998 444333221 2489999998
Q ss_pred CCC---CC-CCceEEEecccc
Q 017835 252 MFE---AI-PPADAVLIKCVL 268 (365)
Q Consensus 252 ~~~---~~-~~~D~i~~~~vl 268 (365)
..+ .. +.+|+|++--.+
T Consensus 154 s~~~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCC
T ss_pred HHHHHhccCCCCCEEEECCCC
Confidence 655 22 358999885544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.11 E-value=0.39 Score=36.49 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=57.8
Q ss_pred ccCCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEecccc
Q 017835 198 FEGLNTLVDVGGGTG-TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVL 268 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vl 268 (365)
.+++.+||=+|+|.- .++..+++.. +.+++++|. +.-++.+++..--.++..+-.+. ...+|.++....-
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~ 103 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS 103 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc
Confidence 677888888998764 4455566665 689999998 77777777633223332221111 1234444433221
Q ss_pred ccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 269 HNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 269 h~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
...+....+.|+| +|+++++-.
T Consensus 104 --------~~~~~~~~~~l~~---~G~iv~~G~ 125 (166)
T d1llua2 104 --------NSAFGQAIGMARR---GGTIALVGL 125 (166)
T ss_dssp --------HHHHHHHHTTEEE---EEEEEECCC
T ss_pred --------chHHHHHHHHhcC---CcEEEEEEe
Confidence 2457888899999 899988753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.97 E-value=0.22 Score=38.19 Aligned_cols=93 Identities=28% Similarity=0.300 Sum_probs=60.6
Q ss_pred ccCCCeEEEecC-C-ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---C-----CC-CceEEEec
Q 017835 198 FEGLNTLVDVGG-G-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---A-----IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~-----~~-~~D~i~~~ 265 (365)
.+++.+||=+|| | .|..+..+++.....++++.|. +.-.+.+++..--.++..+-.+ . .+ .+|+++-.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 678899999996 3 5566777777766678999997 6666666652111222222222 1 12 38988765
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
..- ...++.+.+.++| ||+++++-.
T Consensus 105 ~g~--------~~~~~~a~~~l~~---~G~iv~~G~ 129 (170)
T d1jvba2 105 NNS--------EKTLSVYPKALAK---QGKYVMVGL 129 (170)
T ss_dssp CCC--------HHHHTTGGGGEEE---EEEEEECCS
T ss_pred ccc--------chHHHhhhhhccc---CCEEEEecc
Confidence 321 3557778889999 899988864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.88 E-value=0.8 Score=35.04 Aligned_cols=93 Identities=19% Similarity=0.149 Sum_probs=59.7
Q ss_pred ccCCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---C----CC-CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGT-LASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---A----IP-PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~-~~D~i~~~~v 267 (365)
.+++.+||=+|||.-. ++..+++.....++++.|. +.-++.+++..-..++..+-.+ . .+ .+|+++-+--
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 6788899999998654 4555666665557778887 6677777762222233222111 1 12 4888875432
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
. ...++.+.+.++| +|+++++-.
T Consensus 106 -----~---~~~~~~~~~~~~~---~G~i~~~G~ 128 (174)
T d1f8fa2 106 -----S---PEILKQGVDALGI---LGKIAVVGA 128 (174)
T ss_dssp -----C---HHHHHHHHHTEEE---EEEEEECCC
T ss_pred -----c---HHHHHHHHhcccC---ceEEEEEee
Confidence 1 4567888999999 899988754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.42 Score=40.32 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=51.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHHhccc------CCCeEEEeCCCCCC---C---CCceEEE
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKK-FPHIECTVFDQ-PHVVADLKS------NGNLKYVGGNMFEA---I---PPADAVL 263 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~---~~~D~i~ 263 (365)
..++.+|||+.+|.|.=+..++.. .+..+++.+|. +.-+..+++ ..++.+...|+... . ..||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 567889999999999988888875 45678999998 555555443 57888888887652 1 2489998
Q ss_pred ec
Q 017835 264 IK 265 (365)
Q Consensus 264 ~~ 265 (365)
+-
T Consensus 172 ~D 173 (293)
T d2b9ea1 172 LD 173 (293)
T ss_dssp EC
T ss_pred ec
Confidence 74
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=92.65 E-value=0.038 Score=41.34 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=47.9
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|... ++.|+.+||+.+++ +...+.+.++-|...|++++....+|+..-.+.+|+.|+.+.
T Consensus 35 iL~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 98 (139)
T d2a61a1 35 ILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 98 (139)
T ss_dssp HHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHhCC---CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHH
Confidence 33444432 68999999999999 678999999999999999987532222123589999887554
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.63 E-value=0.033 Score=42.26 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.0
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|+..|-.+++|+|+.+||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 31 i~~~L~~~~~plt~~ela~~l~v---sk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 31 VYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhCCCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCEEEEE
Confidence 34444333478999999999999 5799999999999999998764
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.61 E-value=0.038 Score=41.22 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+.+||+.+++ +...+.++++.|...|++++....+|+..-...+|+.++.+.
T Consensus 42 ~~~t~~~la~~~~~---~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 42 DSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 97 (137)
T ss_dssp SCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred CCCcHHHHHHHHCC---CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHH
Confidence 46899999999999 679999999999999999987532222123588888887544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.25 E-value=0.19 Score=38.54 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=58.7
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHHhcccC-CCeEEEeCCCCC---CC-CCceEEEeccc-cc
Q 017835 198 FEGLNTLVDVGGG-TGTLASAIAKKFPHIECTVFDQ-PHVVADLKSN-GNLKYVGGNMFE---AI-PPADAVLIKCV-LH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~---~~-~~~D~i~~~~v-lh 269 (365)
.+++.+||-+|+| .|.++..+++.. +++++++|. +.-++.+++. ....+...+-.+ .. ..+|+++..-. .+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6788999999998 566677777664 789999997 6667777752 122222222111 12 25898776422 21
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.. .+....+.++| +|+++++-.
T Consensus 104 ~~-------~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKV---GGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEE---EEEEEECCC
T ss_pred cc-------hHHHHHHHhhc---cceEEEecc
Confidence 11 13456778999 899998763
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=0.084 Score=39.33 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..+||+.+++ +...+.++++.|...|++++.....|+..-.+++|+.|+.+.
T Consensus 47 ~~~t~~ela~~~~i---~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~ 102 (138)
T d1jgsa_ 47 ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred cCCCHHHHHHHHCC---CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHH
Confidence 68999999999999 679999999999999999986532222223699999887544
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=92.15 E-value=0.055 Score=39.07 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+++|+.+||+.+++ +...+.+.++.|...|++.+....+|...-.+.+|+.++..
T Consensus 48 ~~~t~~~la~~l~~---~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~ 102 (115)
T d2frha1 48 KEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKK 102 (115)
T ss_dssp SEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHH
T ss_pred CCCCHHHHHHHHCC---CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHH
Confidence 57899999999999 67899999999999999999864333323458899988743
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.06 E-value=0.78 Score=34.62 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=56.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC---C----CCCceEEEeccccc
Q 017835 198 FEGLNTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE---A----IPPADAVLIKCVLH 269 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~~~D~i~~~~vlh 269 (365)
.+++.+||=+|+|+-..+.....+..+.++++++. +.-.+.+++..--.++...-.+ . .++.|.++...+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-- 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-- 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC--
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC--
Confidence 67788999999887655444443445679999997 7777777652221222111111 0 124454444322
Q ss_pred cCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 270 NWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 270 ~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
. ...+....+.++| +|+++++-.
T Consensus 103 --~----~~~~~~a~~~l~~---~G~i~~~g~ 125 (168)
T d1rjwa2 103 --S----KPAFQSAYNSIRR---GGACVLVGL 125 (168)
T ss_dssp --C----HHHHHHHHHHEEE---EEEEEECCC
T ss_pred --C----HHHHHHHHHHhcc---CCceEeccc
Confidence 1 3568889999999 899888753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=1.5 Score=33.23 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=61.0
Q ss_pred ccCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC----------CC-CceEEEe
Q 017835 198 FEGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA----------IP-PADAVLI 264 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~----------~~-~~D~i~~ 264 (365)
.+++.+|+=+|+|+... +..+++.....+++++|. +.-++.+++..--.+...+-.++ .+ .+|+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 67788999999987655 455565554348999998 77788777622112222211111 12 4888876
Q ss_pred ccccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 265 KCVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 265 ~~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
.-- . ...++...+.++| ||+++++-..
T Consensus 104 ~~G-----~---~~~~~~a~~~~~~---gG~iv~~G~~ 130 (171)
T d1pl8a2 104 CTG-----A---EASIQAGIYATRS---GGTLVLVGLG 130 (171)
T ss_dssp CSC-----C---HHHHHHHHHHSCT---TCEEEECSCC
T ss_pred ccC-----C---chhHHHHHHHhcC---CCEEEEEecC
Confidence 432 1 3568889999999 9999998753
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.87 E-value=0.1 Score=33.05 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
+++.+..+||+.+|+ .+.-+.++++-|...|++..+.
T Consensus 21 ~~~v~~~~iA~~L~v---s~~SVt~mvkrL~~~Glv~~~~ 57 (63)
T d2isya1 21 GVTPLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG 57 (63)
T ss_dssp TCCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCCcHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcC
Confidence 478999999999999 5788999999999999999875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.76 E-value=1.5 Score=33.32 Aligned_cols=93 Identities=14% Similarity=-0.075 Sum_probs=57.8
Q ss_pred ccCCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe-CCCCCC--------C-CCceEEEec
Q 017835 198 FEGLNTLVDVGGGTG-TLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG-GNMFEA--------I-PPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~-~d~~~~--------~-~~~D~i~~~ 265 (365)
.+++.+||=+|+|.+ ..+..+++.....+++.+|. +.-.+.+++..-...+. .+-.+. . ..+|+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 678899999988655 45666677777779999998 66677776533332222 121111 1 248988775
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
.-. ...++.+...+++ +|+.+++-.
T Consensus 106 ~G~--------~~~~~~a~~~~~~---~~g~~~~~~ 130 (176)
T d2jhfa2 106 IGR--------LDTMVTALSCCQE---AYGVSVIVG 130 (176)
T ss_dssp SCC--------HHHHHHHHHHBCT---TTCEEEECS
T ss_pred CCc--------hhHHHHHHHHHhc---CCcceEEec
Confidence 433 2446667777887 544444443
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=91.59 E-value=0.076 Score=38.30 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|+.+||+.+++ +...+.++++.|...|++.+....+|...-...+|+.|+.+.
T Consensus 47 ~~~t~~ela~~l~~---~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 102 (115)
T d1hsja1 47 NEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 102 (115)
T ss_dssp SEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred CCcCHHHHHHHHCC---ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHH
Confidence 68999999999999 679999999999999999987643333223488888886443
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=91.26 E-value=0.096 Score=36.33 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=52.9
Q ss_pred HHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCccceE
Q 017835 23 VWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGY 101 (365)
Q Consensus 23 l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y 101 (365)
.++++-+=|...+|... .. ++....||.+.+ |+ .+..|.+=|+.|.+.|++++....+....-.|
T Consensus 4 ~l~ilg~kW~l~Il~~L---------~~--g~~rF~el~~~l~gi---s~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY 69 (95)
T d2hzta1 4 TLEVIGGKWKCVILCHL---------TH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPKVEY 69 (95)
T ss_dssp HHHHHCSTTHHHHHHHH---------TT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHcCCCHHHHHHHH---------Hc--CCCCHHHHHHHhhcC---ChhHHHHHHHHHHHhHHHhheeccccccchhh
Confidence 34555555666655543 22 789999999997 89 57899999999999999998652110001239
Q ss_pred ecCccchhhh
Q 017835 102 ILTSASKLLL 111 (365)
Q Consensus 102 ~~t~~~~~l~ 111 (365)
++|+.++.|.
T Consensus 70 ~LT~~G~~L~ 79 (95)
T d2hzta1 70 ELSEYGRSLE 79 (95)
T ss_dssp EECTTGGGGH
T ss_pred hhhhhHHHHH
Confidence 9999998554
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=91.26 E-value=0.097 Score=38.97 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++.|..+||+.+++ +...+.++++.|...|++++....+|+..-.+++|+.|+.+.
T Consensus 45 ~~~t~~~la~~l~i---~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~ 100 (140)
T d3deua1 45 PDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (140)
T ss_dssp SSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred CCccHHHHHHHHCC---CHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHH
Confidence 57999999999999 678999999999999999986532222123599999887544
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.11 Score=31.88 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 43 GIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 43 glf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++|..|.+ +...|+.+||.++++ +...+.+.|-.|...|-+.+++
T Consensus 6 ~~l~~lg~-~~~~tA~~LA~kl~v---pKk~iNr~LYsL~~kgkl~k~~ 50 (59)
T d2gxba1 6 KFLEELGE-GKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEA 50 (59)
T ss_dssp HHHHHHCT-TCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHhcCC-ccchhHHHHHHHhCC---cHHHHHHHHHHHHHccchhhcC
Confidence 34556665 378999999999999 4688999999999999999876
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=90.97 E-value=0.2 Score=38.39 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=47.0
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|... ++.|+.+||+.+++ +...+.++++-|...|++++....+|...-..++|+.+..+.
T Consensus 46 vL~~l~~~-~~~t~~~la~~~~l---~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 109 (162)
T d2fxaa1 46 ILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 109 (162)
T ss_dssp HHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHhhhccC-CCcCHHHHHHHHcC---CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHH
Confidence 45555543 68999999999999 679999999999999999987532222223588888887443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.18 Score=38.96 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=59.7
Q ss_pred ccCCCeEEEecC--CccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeC---CCCCC-----CC-CceEEEec
Q 017835 198 FEGLNTLVDVGG--GTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGG---NMFEA-----IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~~-----~~-~~D~i~~~ 265 (365)
++++.+||-.|+ |.|..+..+++.. ++++++++. ++-.+.+++..--.++.. |+.+. -+ .+|+++.+
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 678889999985 6778888888876 678888876 666666665221122211 22111 12 48988764
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEe
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIID 300 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e 300 (365)
. . ...++...+.|+| +|+++.+-
T Consensus 105 ~-----g----~~~~~~~~~~l~~---~G~iv~~G 127 (174)
T d1yb5a2 105 L-----A----NVNLSKDLSLLSH---GGRVIVVG 127 (174)
T ss_dssp C-----H----HHHHHHHHHHEEE---EEEEEECC
T ss_pred c-----c----HHHHHHHHhccCC---CCEEEEEe
Confidence 2 1 2357888899999 89999874
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.64 E-value=0.049 Score=34.30 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=38.6
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|...|.. ++..|..+||+.+|+ ++..+.+-++.|...|++..-
T Consensus 5 D~kIl~~L~~-n~r~s~~~lA~~~gl---s~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d1i1ga1 5 DKIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY 50 (60)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 4456667776 378999999999999 578999999999999999754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.61 E-value=1.1 Score=34.27 Aligned_cols=94 Identities=19% Similarity=0.121 Sum_probs=60.8
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeC---CCCC---C-C-C-CceEEEecc
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGG---NMFE---A-I-P-PADAVLIKC 266 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~~---~-~-~-~~D~i~~~~ 266 (365)
.+++.+||=+|||. |.++..+++...-.+++++|. +.-.+.+++..-..++.. +..+ . . . .+|+++-+-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 67788899899987 777888888654347999998 666777765221122211 1111 1 1 1 389876643
Q ss_pred ccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 017835 267 VLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIK 302 (365)
Q Consensus 267 vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~ 302 (365)
-- ...++.+.+.++| +|+++++-..
T Consensus 105 g~--------~~~~~~a~~~~~~---~G~iv~~G~~ 129 (174)
T d1jqba2 105 GG--------SETLSQAVKMVKP---GGIISNINYH 129 (174)
T ss_dssp SC--------TTHHHHHHHHEEE---EEEEEECCCC
T ss_pred CC--------HHHHHHHHHHHhc---CCEEEEEeec
Confidence 21 2457788899999 8999987653
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.50 E-value=0.028 Score=41.99 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=47.6
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
++..|... ++.|+.+||+.+++ +...+.++++-|...|++++....+|+..-.+.+|+.+..+.
T Consensus 35 vL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 98 (136)
T d2fbia1 35 VIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 98 (136)
T ss_dssp HHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHH
Confidence 34444542 78999999999999 679999999999999999986532221112488888887444
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=90.47 E-value=0.078 Score=39.84 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
+|.|..+||+.+++ +...+.+.++-|...|++++....+|+..-...+|+.+..+.
T Consensus 42 ~~~t~~~la~~l~i---~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 42 PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCc---cHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHH
Confidence 68999999999999 679999999999999999987633222123588888887444
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=90.40 E-value=0.23 Score=35.60 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 19 SQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 19 ~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
+....++++.+-|...+|... .. |+....||.+.+ |+ ....|.+=|+.|...|++++........
T Consensus 13 pv~~~l~~ig~kW~l~Il~~L---------~~--g~~RF~el~~~l~gi---s~~~Ls~rL~~Le~~glv~R~~~~~~p~ 78 (114)
T d1yyva1 13 PSREVLKHVTSRWGVLILVAL---------RD--GTHRFSDLRRKMGGV---SEKMLAQSLQALEQDGFLNRVSYPVVPP 78 (114)
T ss_dssp THHHHHHHHHSHHHHHHHHHG---------GG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred CHHHHHHHHcCCCHHHHHHHH---------hc--CCCCHHHHHHHcccc---chhHHHHHHHHHHHHHHHhhcccCCCCc
Confidence 456788888888988877653 22 688999999998 78 5788999999999999999865211000
Q ss_pred cceEecCccchhhh
Q 017835 98 EEGYILTSASKLLL 111 (365)
Q Consensus 98 ~~~y~~t~~~~~l~ 111 (365)
.-.|++|+.++-|.
T Consensus 79 ~veY~LT~~G~~L~ 92 (114)
T d1yyva1 79 HVEYSLTPLGEQVS 92 (114)
T ss_dssp EEEEEECHHHHHHH
T ss_pred hhHhHhhHhHHHHH
Confidence 12499999998554
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.24 E-value=0.061 Score=33.82 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=39.9
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
++..|.+.|.. ++..|..+||+++|+ ++..+.+=++.|...|++..-
T Consensus 4 ~D~~Il~~L~~-n~r~s~~eiA~~l~l---s~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d2cyya1 4 IDKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 50 (60)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 45567777876 378999999999999 578899999999999999854
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=90.00 E-value=0.12 Score=38.41 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=48.6
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhhc
Q 017835 45 PDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLLK 112 (365)
Q Consensus 45 f~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~~ 112 (365)
+..|... ++.|..+||+.+++ +...+.+.++.|...|++.+....+|+..-...+|+.|..+..
T Consensus 39 L~~l~~~-~~~t~~~La~~~~i---~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~ 102 (137)
T d1z91a1 39 LLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 102 (137)
T ss_dssp HHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHH
Confidence 3344432 68999999999999 6799999999999999999876433322234899998875543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.97 E-value=1.5 Score=33.48 Aligned_cols=134 Identities=11% Similarity=-0.001 Sum_probs=71.9
Q ss_pred ccCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhcccC-CCeEEEeCCCCCC--------CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKSN-GNLKYVGGNMFEA--------IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~--------~~-~~D~i~~~ 265 (365)
.+++.+|+=+|+|.... +..+++.....+++++|. ++-++.+++. ....+-..|.... .+ .+|+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 67889999999987544 555666665578999998 8888888872 2222211221111 12 48877664
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE 343 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 343 (365)
..- ...+......+.+ ++|+++++-......... +................|......++.++++.
T Consensus 107 ~g~--------~~~~~~a~~~~~~--~~G~~v~vG~~~~~~~~~--~~~~~~~~~~~i~Gs~~G~~~~~~dip~li~~ 172 (176)
T d1d1ta2 107 IGH--------LETMIDALASCHM--NYGTSVVVGVPPSAKMLT--YDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTE 172 (176)
T ss_dssp SCC--------HHHHHHHHTTSCT--TTCEEEECSCCCTTCCEE--ECTHHHHTTCEEEECSGGGCCHHHHHHHHHHH
T ss_pred CCc--------hHHHHHHHHHhhc--CCeEEEEEEccccccccC--CCHHHHhCCCEEEEEEEeCCCcHHHHHHHHHH
Confidence 321 2334555555544 058888876543322211 11111122222222223444456677666553
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=89.85 E-value=0.29 Score=31.66 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|-|-|..|||+.+|+. .+..+.+.|+.|...|++++..
T Consensus 22 G~~Ps~rei~~~~g~~--S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 22 GMPPTRAEIAQRLGFR--SPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp SSCCCHHHHHHHTTCS--SHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCCHHHHHHHcCCC--CHHHHHHHHHHHHHCcCeecCC
Confidence 4689999999999995 4678999999999999999974
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.073 Score=33.83 Aligned_cols=46 Identities=9% Similarity=0.173 Sum_probs=39.3
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
+..|+..|.. ++..|..+||+++|+ ++..+.+=++.|.+.|++...
T Consensus 7 D~~IL~~L~~-~~r~s~~eiA~~l~l---s~~~v~~Ri~rL~~~GiI~~~ 52 (63)
T d2cg4a1 7 DRGILEALMG-NARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 52 (63)
T ss_dssp HHHHHHHHHH-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 4566777776 378999999999999 578899999999999999854
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=89.69 E-value=0.087 Score=33.46 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=39.6
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceecc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQ 90 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~ 90 (365)
.+..|++.|.. ++..|..+||+.+|+ ++..+.+=++-|...|++...
T Consensus 6 ~D~~IL~~L~~-n~r~s~~~iA~~lgi---s~~tv~~Ri~~L~~~giI~~~ 52 (63)
T d2cfxa1 6 IDLNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (63)
T ss_dssp HHHHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 34567777876 389999999999999 578899999999999999854
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=89.66 E-value=0.13 Score=37.56 Aligned_cols=54 Identities=9% Similarity=0.268 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKL 109 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 109 (365)
+++|+.+||+.+++ ....+.+.++.|...|++.+....+|...-...+|+.++.
T Consensus 49 ~~~t~~eia~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~ 102 (125)
T d1p4xa1 49 NTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQRE 102 (125)
T ss_dssp SEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHH
T ss_pred CCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHH
Confidence 58999999999999 5789999999999999999976433322234888888864
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=89.48 E-value=0.14 Score=37.39 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=48.4
Q ss_pred CcccccccC-CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 43 GIPDIIHNH-AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 43 glf~~L~~~-~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
-++..|... +++.|+.+||+.+++ +...+.+.++-|...|++++....+|...-...+|+.|+.+.
T Consensus 37 ~vL~~l~~~~~~~~~~~~ia~~l~~---~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~ 103 (125)
T d1p4xa2 37 TILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 103 (125)
T ss_dssp HHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHccCCCccHHHHHHHHCC---CcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHH
Confidence 345555321 257899999999999 679999999999999999987643333223488888886443
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=89.36 E-value=0.21 Score=31.36 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
++.+..+||+.+|+ .+.-+..+++-|...|+++.+.
T Consensus 20 ~~v~~~~iA~~L~v---s~~SVs~mikrL~~~GlV~~~~ 55 (61)
T d2ev0a1 20 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK 55 (61)
T ss_dssp SSCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred CCccHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcc
Confidence 78999999999999 5688999999999999999874
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=88.86 E-value=0.31 Score=34.48 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCC
Q 017835 18 QSQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENE 96 (365)
Q Consensus 18 ~~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~ 96 (365)
-+....++++-+-|...+|... .. |+....||.+.+ |+ .+..|.+=|+.|...|++.+....+..
T Consensus 7 c~i~~al~iig~kW~~~Il~~L---------~~--g~~RF~el~~~l~gI---S~~~Ls~rLk~L~~~glv~R~~~~~~p 72 (108)
T d1z7ua1 7 TSINLALSTINGKWKLSLMDEL---------FQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELP 72 (108)
T ss_dssp HHHHHHHHTTCSTTHHHHHHHH---------HH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred CcHHHHHHHHcCCCHHHHHHHH---------Hc--CCCCHHHHHHHCcCC---ChhHHHHHHHHHHHCCcceeeccCCCc
Confidence 3456667777777777777653 22 688999999997 78 578999999999999999986421100
Q ss_pred ccceEecCccchhhh
Q 017835 97 QEEGYILTSASKLLL 111 (365)
Q Consensus 97 ~~~~y~~t~~~~~l~ 111 (365)
..-.|++|+.++-|.
T Consensus 73 ~~veY~LT~~G~~L~ 87 (108)
T d1z7ua1 73 PRVEYTLTPEGYALY 87 (108)
T ss_dssp CEEEEEECHHHHHHH
T ss_pred ceehhhhchhHHHHH
Confidence 001399999998554
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=88.38 E-value=0.48 Score=33.05 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHc-CCCCCCcchHHHHHHHHHhcCceeccccCCCCc
Q 017835 19 SQAHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTL-QIHPTKTQCVYHLMRILVHSGFFALQKTSENEQ 97 (365)
Q Consensus 19 ~~~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 97 (365)
+....++++-+=|...+|... .. ++....||.+.+ |+ .+..|.+=|+.|.+.|++.+....+.-.
T Consensus 9 pv~~~l~ilg~kW~l~Il~~L---------~~--g~~rF~el~~~l~gI---s~~~Ls~rLkeL~~~glv~r~~~~~~p~ 74 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQI---------NR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVPP 74 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHHH---------TT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred CHHHHHHHHcCCCHHHHHHHH---------cc--CCCCHHHHHhhCccc---chhHHHHHHHHHHHCCceeecccCCCCC
Confidence 466778888888887777653 22 689999999997 88 5788999999999999999864211000
Q ss_pred cceEecCccchhhh
Q 017835 98 EEGYILTSASKLLL 111 (365)
Q Consensus 98 ~~~y~~t~~~~~l~ 111 (365)
.-.|++|+.|..|.
T Consensus 75 ~veY~LT~~G~~L~ 88 (102)
T d2fswa1 75 RVEYSLTPLGEKVL 88 (102)
T ss_dssp EEEEEECHHHHTTH
T ss_pred eehhhhhHhHHHHH
Confidence 12499999997544
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=88.10 E-value=0.32 Score=31.67 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=36.9
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCcc
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSA 106 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 106 (365)
++|-++||+.+|+ ....+.|.|..|...|+++.. .+.+...+.
T Consensus 27 ~lt~~elA~~lg~---sr~tvsr~l~~l~~~g~I~~~-------~~~i~I~d~ 69 (73)
T d1zyba1 27 KVKMDDLARCLDD---TRLNISKTLNELQDNGLIELH-------RKEILIPDA 69 (73)
T ss_dssp ECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSCEEE-------TTEEEESCG
T ss_pred ecCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEec-------CCEEEEccH
Confidence 6899999999999 579999999999999999976 466666543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.64 E-value=0.71 Score=39.26 Aligned_cols=127 Identities=10% Similarity=0.076 Sum_probs=72.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeE-EEeec-hHHHHhccc-CCCeEEEeCCCCCC----CC--CceEEEeccccccC
Q 017835 201 LNTLVDVGGGTGTLASAIAKKFPHIEC-TVFDQ-PHVVADLKS-NGNLKYVGGNMFEA----IP--PADAVLIKCVLHNW 271 (365)
Q Consensus 201 ~~~iLDiG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~----~~--~~D~i~~~~vlh~~ 271 (365)
..+|+|+=||.|.+...|.+..-+.++ ..+|. +..++..+. .....+..+|+.+- ++ +.|+++...-+..+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 468999999999999998877433343 45677 666555443 34566777887751 22 58999887766655
Q ss_pred Ch--------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCccCccchhhhhhhhhhhhhccCccccCHHHHHHHHHh
Q 017835 272 ND--------EECVKILKNCKKAIAINGKAGKVIIIDIKMESEKADYKTTETQLFMDMLMMVLVKGEERNEKEWAKLFFE 343 (365)
Q Consensus 272 ~~--------~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 343 (365)
+- ++...++-.+.++++-....-+++++|.+..-... .+.+.+.+.|++
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~ENV~~l~~~-----------------------~~~~~i~~~l~~ 138 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVS-----------------------STRDLLIQTIEN 138 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGS-----------------------HHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhHhhhcCCCceeeeeccCCcccc-----------------------hhhHHHHhhhhc
Confidence 42 22234555555554310000267888876522100 124567788899
Q ss_pred cCCccce
Q 017835 344 AGFSDYK 350 (365)
Q Consensus 344 aGf~~~~ 350 (365)
.||++..
T Consensus 139 ~GY~v~~ 145 (343)
T d1g55a_ 139 CGFQYQE 145 (343)
T ss_dssp TTEEEEE
T ss_pred cccccce
Confidence 9987643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.45 E-value=1.7 Score=31.35 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=52.6
Q ss_pred eEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccCC
Q 017835 203 TLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNWN 272 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~~ 272 (365)
+|+=+|+ |.++..+++.+ .+..++++|. ++.++.+.....+.++.||..++ ...+|.+++. .+
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 4565655 66766666643 3578999998 88887776544678899999883 2358888773 23
Q ss_pred hhHHHHHHHHHHHhccc
Q 017835 273 DEECVKILKNCKKAIAI 289 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p 289 (365)
+++.-.+.....+.+.+
T Consensus 75 ~d~~N~~~~~~~k~~~~ 91 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGI 91 (132)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 33333445556667777
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=87.41 E-value=0.51 Score=36.25 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=50.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHHhccc-------CCCeEE------EeCCCCCCCCCceEEEeccc
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKS-------NGNLKY------VGGNMFEAIPPADAVLIKCV 267 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~------~~~d~~~~~~~~D~i~~~~v 267 (365)
++|.=||+|....+.+..-.--+.+++++|. +..++..+. ...... ...|..+..+++|+|++.-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v- 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV- 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS-
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE-
Confidence 5788899988766544333223679999998 666665543 111111 1112111235689998853
Q ss_pred cccCChhHHHHHHHHHHHhccc
Q 017835 268 LHNWNDEECVKILKNCKKAIAI 289 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p 289 (365)
+......++++++..+++
T Consensus 81 ----~~~~~~~~~~~i~~~l~~ 98 (184)
T d1bg6a2 81 ----PAIHHASIAANIASYISE 98 (184)
T ss_dssp ----CGGGHHHHHHHHGGGCCT
T ss_pred ----chhHHHHHHHHhhhccCC
Confidence 334457889999999988
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=87.33 E-value=0.57 Score=40.81 Aligned_cols=64 Identities=13% Similarity=0.267 Sum_probs=39.2
Q ss_pred CchHHHHHHHHhhcCcccchHHHHhhccccccCCCeEEEecCCccHHHHHHHHHC-------CCCeEEEeechHHHH
Q 017835 168 ETRLNHFFNEGMASDTRLTSSALIHKCKDVFEGLNTLVDVGGGTGTLASAIAKKF-------PHIECTVFDQPHVVA 237 (365)
Q Consensus 168 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~iLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~~ 237 (365)
.|+....|.+..+... ..+...+. .++..+|||+|+|+|.++..+++.+ ..+++..++..+.+.
T Consensus 53 sp~is~~Fg~~ia~~~----~~~~~~~~--~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~ 123 (365)
T d1zkda1 53 SPEISQMFGELLGLWS----ASVWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 123 (365)
T ss_dssp HHHHCHHHHHHHHHHH----HHHHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CCchHHHHHHHHHHHH----HHHHHHhC--CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHH
Confidence 3555566666554221 12223333 3456789999999999998877653 234678888744333
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.84 E-value=5 Score=30.25 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=60.0
Q ss_pred ccCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEe---CCCCC-C-----CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVG---GNMFE-A-----IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~-~-----~~-~~D~i~~~ 265 (365)
.+++.+||=+|||...+ +..+++.....+++++|. +.-++.+++..-..++. .|... . .+ .+|+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 67889999999987654 555666665568999998 77778777633222322 22111 0 12 48888764
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDIKME 304 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~~~~ 304 (365)
-.- ...+.+....+++ ++|+++++-...+
T Consensus 105 ~g~--------~~~~~~~~~~~~~--~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 105 AGR--------IETMMNALQSTYC--GSGVTVVLGLASP 133 (174)
T ss_dssp SCC--------HHHHHHHHHTBCT--TTCEEEECCCCCT
T ss_pred CCC--------chHHHHHHHHHHH--hcCceEEEEEecC
Confidence 321 3456677777765 1588888775433
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=86.77 E-value=3.5 Score=30.99 Aligned_cols=93 Identities=12% Similarity=0.008 Sum_probs=60.5
Q ss_pred ccCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCC--CC-----CC-CceEEEeccc
Q 017835 198 FEGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMF--EA-----IP-PADAVLIKCV 267 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~--~~-----~~-~~D~i~~~~v 267 (365)
.+++.+||=+|+|.... +..+++.....++++.|. +.-.+.+++..-..++..+-. +. .+ .+|+++-..-
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 46778999999887655 456666665568888888 666777766333333332211 10 12 3888776432
Q ss_pred cccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 268 LHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 268 lh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
. ...+....+.+++ ||+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~---~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGR---MGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEE---EEEEEECCC
T ss_pred -----c---chHHHHHHHHHhC---CCEEEEEeC
Confidence 1 3457888899999 899998763
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=86.63 E-value=0.56 Score=30.24 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhh
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLL 110 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l 110 (365)
+++-|..-|+++.++ +-..++|.|-.|.+.|+.+..- .||| .+.=++|+.+..+
T Consensus 22 g~~WSLaklsKra~~---PMS~LRR~LTqL~~aGl~~t~~-~edG-~G~A~Lt~~G~~l 75 (81)
T d2obpa1 22 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSV-EADG-RGHASLTQEGAAL 75 (81)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE-CTTS-CEEEEECHHHHHH
T ss_pred CCCccHHHHHhhcCC---cHHHHHHHHHHHhhcCceeeee-ccCC-cceeeccHHHHHH
Confidence 468999999999999 4789999999999999988643 1333 5778888887644
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.41 E-value=0.14 Score=30.54 Aligned_cols=54 Identities=11% Similarity=0.254 Sum_probs=42.5
Q ss_pred HcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEec
Q 017835 41 QLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYIL 103 (365)
Q Consensus 41 ~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~ 103 (365)
|-+|+..|.++++|....+|++.+++ +..-+.++|-.|-..+=+...+ .+.|++
T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqV---pkk~lNqVL~rlkke~kVsl~~------patW~l 56 (57)
T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPE------PATWSI 56 (57)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHCC---CHHHHHHHHHHHHhccccccCC------CccccC
Confidence 34456666766789999999999999 4678999999998888877775 566654
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.93 E-value=0.24 Score=36.98 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=56.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccce
Q 017835 21 AHVWNNIFSFVNSMSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEG 100 (365)
Q Consensus 21 ~~l~~~~~g~~~~~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~ 100 (365)
...++++-+-|...+|+.+. . |+....||.+.+|+ .+..|.+=|+.|...|++.+... +....-.
T Consensus 11 ~~~l~ilg~kW~l~Il~~l~---------~--G~~rf~el~~~lgi---s~~vLs~rL~~L~~~gLv~r~~~-~~p~r~~ 75 (142)
T d2f2ea1 11 ARPLDVIGDGWSMLIVRDAF---------E--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPA-ESGSHQE 75 (142)
T ss_dssp TTTHHHHCSSSHHHHHHHHH---------T--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-SSSSCEE
T ss_pred HHHHHHHcCCCHHHHHHHHH---------c--CCCCHHHHHHHhhc---cHHHHHHHHHHHHHhcceeeecC-CCCCeeE
Confidence 34566777777777777642 2 79999999999999 56889999999999999987431 1111234
Q ss_pred EecCccchhhh
Q 017835 101 YILTSASKLLL 111 (365)
Q Consensus 101 y~~t~~~~~l~ 111 (365)
|++|+.++-|.
T Consensus 76 Y~LT~~G~~L~ 86 (142)
T d2f2ea1 76 YRLTDKGRALF 86 (142)
T ss_dssp EEECHHHHTTH
T ss_pred EecCcCcchHH
Confidence 99999987544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=85.70 E-value=5.6 Score=29.73 Aligned_cols=91 Identities=19% Similarity=0.070 Sum_probs=55.1
Q ss_pred ccCCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC----------CCCceEEEec
Q 017835 198 FEGLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA----------IPPADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~----------~~~~D~i~~~ 265 (365)
.+++.+||=+|+|.+.. +..+++..-..+++++|. ++-++.+++..--.++..+-.+. ...+|+++-.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~ 105 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 105 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence 67889999999988544 555666666678999998 77777777633222332111111 1148888664
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEE
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~ 299 (365)
--- ...+..+...+++ ||.++++
T Consensus 106 ~G~--------~~~~~~a~~~~~~---g~~~~~~ 128 (175)
T d1cdoa2 106 VGN--------VGVMRNALESCLK---GWGVSVL 128 (175)
T ss_dssp SCC--------HHHHHHHHHTBCT---TTCEEEE
T ss_pred cCC--------HHHHHHHHHHhhC---CCcceeE
Confidence 321 3446666777666 5554443
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.56 E-value=1.8 Score=31.06 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCccHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccCChhHHHHHH
Q 017835 209 GGTGTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNWNDEECVKIL 280 (365)
Q Consensus 209 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~~~~~~~~~L 280 (365)
||.|..+..+++.+.+-.++++|. +...+.+. ...+.++.||..++ ...++.+++.. -+|.....+.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~----~~d~~n~~~~ 80 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL----ESDSETIHCI 80 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC----SSHHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec----cchhhhHHHH
Confidence 566888899999887777888887 66666655 46788999999883 23577777632 1343333333
Q ss_pred HHHHHhcccCCCCcEEEEE
Q 017835 281 KNCKKAIAINGKAGKVIII 299 (365)
Q Consensus 281 ~~i~~~L~p~~~gG~lli~ 299 (365)
...+.+.| ..++++.
T Consensus 81 -~~~r~~~~---~~~iia~ 95 (129)
T d2fy8a1 81 -LGIRKIDE---SVRIIAE 95 (129)
T ss_dssp -HHHHHHCS---SSCEEEE
T ss_pred -HHHHHHCC---CceEEEE
Confidence 34455676 4555543
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=84.56 E-value=1.5 Score=27.79 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=40.3
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 34 MSLKCAIQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 34 ~~L~~a~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
..|+..+..|-| .. |..++..+||+.+|+ +..-+++-|+.|.+.|+++...
T Consensus 9 ~~l~~~I~~g~~---~~-G~~l~~~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 59 (69)
T d2hs5a1 9 GILRDAIIDGTF---RP-GARLSEPDICAALDV---SRNTVREAFQILIEDRLVAHEL 59 (69)
T ss_dssp HHHHHHHHHTSS---CT-TCEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCC---CC-cCccCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence 445556666655 22 356789999999999 5788999999999999999876
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=84.48 E-value=0.66 Score=30.53 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
-++|-++||+.+|+ ....+.|.|..|...|+++..+
T Consensus 28 ~~lt~~eLA~~~G~---sretvsr~L~~l~~~glI~~~~ 63 (81)
T d2gaua1 28 IYLSREELATLSNM---TVSNAIRTLSTFVSERMLALDG 63 (81)
T ss_dssp CCCCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 48999999999999 5789999999999999999874
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.34 E-value=0.43 Score=30.50 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=32.5
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|+|-++||+.+|+ ....+.|.|+.|...|+++..+
T Consensus 29 ~lt~~~lA~~~G~---sRetvsr~L~~l~~~glI~~~~ 63 (69)
T d1i5za1 29 KITRQEIGQIVGC---SRETVGRILKMLEDQNLISAHG 63 (69)
T ss_dssp ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 6999999999999 5789999999999999999874
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.10 E-value=0.25 Score=38.18 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccchhhh
Q 017835 53 KPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSASKLLL 111 (365)
Q Consensus 53 ~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~l~ 111 (365)
.++|+.+||+.+++ +...+.++++-|...|++++....+|+..-..++|+.|+.+.
T Consensus 78 ~~lt~~eLa~~l~i---~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~ 133 (172)
T d2fbka1 78 EGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 133 (172)
T ss_dssp SCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred CCcCHHHHHHHHCc---CHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHH
Confidence 35899999999999 578999999999999999997632222122478888887544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=83.71 E-value=2 Score=32.35 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=58.1
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeCCCCC----CCCCceEEEeccccccC
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFE----AIPPADAVLIKCVLHNW 271 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~~ 271 (365)
.+++.+|+=+|+|. |.++..+++.. +++.+++|. ++-.+.+++..--.++...-.. ....+|+++-.---
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~--- 103 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA--- 103 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS---
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec---
Confidence 67888999899875 66777788876 678888887 6556666652211222211111 12258988764321
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 272 NDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 272 ~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
...++...+.++| +|+++++-.
T Consensus 104 -----~~~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1uufa2 104 -----PHNLDDFTTLLKR---DGTMTLVGA 125 (168)
T ss_dssp -----CCCHHHHHTTEEE---EEEEEECCC
T ss_pred -----chhHHHHHHHHhc---CCEEEEecc
Confidence 1235677789999 899998754
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=82.78 E-value=5.9 Score=32.71 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=62.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEE-Eeec-hHHHHhcccCCCeEEEeCCCCC----CCCCceEEEeccccccCC---
Q 017835 202 NTLVDVGGGTGTLASAIAKKFPHIECT-VFDQ-PHVVADLKSNGNLKYVGGNMFE----AIPPADAVLIKCVLHNWN--- 272 (365)
Q Consensus 202 ~~iLDiG~G~G~~~~~l~~~~p~~~~~-~~D~-~~~~~~a~~~~~i~~~~~d~~~----~~~~~D~i~~~~vlh~~~--- 272 (365)
.+|||+=||.|.+...|.+. +.+++ .+|. +...+..+..-.-.++.+|+.+ .++..|+++...-+..++
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag 78 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGG 78 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSS
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeeccccccccccc
Confidence 37999999999999988887 45554 6777 5555554442334567788887 356799999876665443
Q ss_pred ------hhHHHHHHHH---HHHhcccCCCCcEEEEEeeec
Q 017835 273 ------DEECVKILKN---CKKAIAINGKAGKVIIIDIKM 303 (365)
Q Consensus 273 ------~~~~~~~L~~---i~~~L~p~~~gG~lli~e~~~ 303 (365)
|+ .-.++-+ +.+.++| +++++|.+.
T Consensus 79 ~~~g~~d~-r~~l~~~~~~~i~~~~P-----k~~~lENV~ 112 (324)
T d1dcta_ 79 SLRGIDDP-RGKLFYEYIRILKQKKP-----IFFLAENVK 112 (324)
T ss_dssp CCCCSSSH-HHHHHHHHHHHHHHHCC-----SEEEEEEEG
T ss_pred cccccccc-ccchHHHHHHHHHhhCC-----ceeeccccc
Confidence 33 2233333 4456677 678888774
|
| >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Heat-inducible transcription repressor HrcA, N-terminal domain domain: Heat-inducible transcription repressor HrcA, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.77 E-value=0.87 Score=30.58 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 52 AKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 52 ~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
+.|.+..+|++..+++- .+.-++..|..|...|++..... .+...+|..+
T Consensus 21 g~Pv~s~~i~~~~~l~~-S~aTIRn~m~~LE~~G~l~~~h~-----s~GriPT~~g 70 (87)
T d1stza1 21 KKPVSSQRVLEVSNIEF-SSATIRNDMKKLEYLGYIYQPHT-----SAGRIPTDKG 70 (87)
T ss_dssp CSCBCHHHHHHHSCCCS-CHHHHHHHHHHHHHTTSEECCSS-----CSCBEECHHH
T ss_pred CCccCHHHHHHHhCCCC-CHHHHHHHHHHHHHCCcccCCCC-----CCCCcccHHH
Confidence 47999999999988731 46789999999999999998754 2445566544
|
| >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: CO-sensing protein CooA, C-terminal domain species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.58 E-value=0.86 Score=29.91 Aligned_cols=43 Identities=14% Similarity=0.303 Sum_probs=36.5
Q ss_pred CCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCc
Q 017835 54 PMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTS 105 (365)
Q Consensus 54 ~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~ 105 (365)
|.|-++||..+|+ ....+.|.|+.|...|+++..+ .+.+....
T Consensus 30 ~~t~~eiA~~lG~---sretvsr~l~~l~~~g~I~~~~------~~~i~I~d 72 (80)
T d1ft9a1 30 DFTVEEIANLIGS---SRQTTSTALNSLIKEGYISRQG------RGHYTIPN 72 (80)
T ss_dssp CCCHHHHHHHHCS---CHHHHHHHHHHHHHTTSSEECS------TTCEECSS
T ss_pred CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEECC------CCeEEECC
Confidence 8999999999999 5789999999999999999864 35555543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=82.42 E-value=0.33 Score=37.22 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=62.3
Q ss_pred CCCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHHhccc--CCCeEEEeCCCCC---CCCCceEEEeccccccCC
Q 017835 200 GLNTLVDVGGGTGTL-ASAIAKKFPHIECTVFDQ-PHVVADLKS--NGNLKYVGGNMFE---AIPPADAVLIKCVLHNWN 272 (365)
Q Consensus 200 ~~~~iLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~---~~~~~D~i~~~~vlh~~~ 272 (365)
++.+|+=||+|.-.+ +...+... +.+++++|. +..+++.+. ..+++....+-.. ....+|+|+..-.+ +
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali---p 106 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV---P 106 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC---T
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec---C
Confidence 468999999998655 56666665 789999998 777776664 4455554332211 23469999886543 2
Q ss_pred hhHHHH-HHHHHHHhcccCCCCcEEEEEeeecCCCc
Q 017835 273 DEECVK-ILKNCKKAIAINGKAGKVIIIDIKMESEK 307 (365)
Q Consensus 273 ~~~~~~-~L~~i~~~L~p~~~gG~lli~e~~~~~~~ 307 (365)
-..+.. +=++..+.||| |+ +|+|...+..+
T Consensus 107 G~~aP~lIt~~mv~~Mk~---GS--VIVDvaidqGG 137 (168)
T d1pjca1 107 GRRAPILVPASLVEQMRT---GS--VIVDVAVDQGG 137 (168)
T ss_dssp TSSCCCCBCHHHHTTSCT---TC--EEEETTCTTCC
T ss_pred CcccCeeecHHHHhhcCC---Cc--EEEEeecCCCC
Confidence 222222 23577888999 55 44566555443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=81.08 E-value=8.7 Score=28.50 Aligned_cols=93 Identities=15% Similarity=0.025 Sum_probs=56.6
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHHhcccCCCeEEEeC-CCCCC--------CC-CceEEEec
Q 017835 198 FEGLNTLVDVGGGT-GTLASAIAKKFPHIECTVFDQ-PHVVADLKSNGNLKYVGG-NMFEA--------IP-PADAVLIK 265 (365)
Q Consensus 198 ~~~~~~iLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~-d~~~~--------~~-~~D~i~~~ 265 (365)
.+++.+||=+|||. |.++..+++..-..+++..|. +.-.+.+++..--.++.. +-.++ .+ .+|+++-.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 67888999888764 355666677665567888887 666777765221122211 11111 12 48888764
Q ss_pred cccccCChhHHHHHHHHHHHhcccCCCCcEEEEEee
Q 017835 266 CVLHNWNDEECVKILKNCKKAIAINGKAGKVIIIDI 301 (365)
Q Consensus 266 ~vlh~~~~~~~~~~L~~i~~~L~p~~~gG~lli~e~ 301 (365)
-- . ...++.+...+++ ||.++++-.
T Consensus 106 ~G-----~---~~~~~~~~~~~~~---g~~~~~v~~ 130 (176)
T d2fzwa2 106 IG-----N---VKVMRAALEACHK---GWGVSVVVG 130 (176)
T ss_dssp SC-----C---HHHHHHHHHTBCT---TTCEEEECS
T ss_pred CC-----C---HHHHHHHHHhhcC---CceeEEEEe
Confidence 32 2 3567788888988 777665543
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.00 E-value=1 Score=29.16 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=39.0
Q ss_pred HHHHHHHcCcccccccCCCCC-CHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 35 SLKCAIQLGIPDIIHNHAKPM-TLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 35 ~L~~a~~lglf~~L~~~~~~~-t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
.|...+..|-+ .. |..+ +..+||+.+++ +..-+++-++.|+..|++....
T Consensus 11 ~i~~~I~~g~~---~~-G~~LPs~~eLa~~~~v---Sr~tvr~Al~~L~~~G~i~~~~ 61 (74)
T d1hw1a1 11 YIIESIWNNRF---PP-GTILPAERELSELIGV---TRTTLREVLQRLARDGWLTIQH 61 (74)
T ss_dssp HHHHHHHTTSS---CT-TSBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHcCCC---CC-cCCCccHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEe
Confidence 34444555554 22 3567 89999999999 5788999999999999999986
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=80.47 E-value=0.3 Score=32.87 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=36.4
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccc
Q 017835 44 IPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQK 91 (365)
Q Consensus 44 lf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~ 91 (365)
|++.|.+.++.+|=++||+.+|+ ....+++.|..|...|++....
T Consensus 23 v~~~L~~~~~evtDe~iA~~tgi---~in~VRk~Ly~L~~~~L~~y~R 67 (88)
T d1q1ha_ 23 VLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYRK 67 (88)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHhccCcCCHHHHHHHhCC---cHHHHHHHHHHHHhCCceEEEE
Confidence 55555432257999999999999 6788999999999999998754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=80.26 E-value=4 Score=29.10 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=49.2
Q ss_pred eEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHHhcccCCCeEEEeCCCCCC-------CCCceEEEeccccccCC
Q 017835 203 TLVDVGGGTGTLASAIAKKF--PHIECTVFDQ-PHVVADLKSNGNLKYVGGNMFEA-------IPPADAVLIKCVLHNWN 272 (365)
Q Consensus 203 ~iLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~vlh~~~ 272 (365)
+++=+|+ |.++..+++.+ -+..++++|. ++.++.++. .....+.+|..++ ...+|.+++.-. +
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~ 74 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-YATHAVIANATEENELLSLGIRNFEYVIVAIG----A 74 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-TCSEEEECCTTCTTHHHHHTGGGCSEEEECCC----S
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-hCCcceeeecccchhhhccCCccccEEEEEcC----c
Confidence 3444555 56666665543 3678999998 888888874 4456677888774 225777665321 2
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEE
Q 017835 273 DEECVKILKNCKKAIAINGKAGKVII 298 (365)
Q Consensus 273 ~~~~~~~L~~i~~~L~p~~~gG~lli 298 (365)
+.....+...+++.+ | ..+++.
T Consensus 75 ~~~~~~~~~~~~~~~-~---~~~iia 96 (134)
T d2hmva1 75 NIQASTLTTLLLKEL-D---IPNIWV 96 (134)
T ss_dssp CHHHHHHHHHHHHHT-T---CSEEEE
T ss_pred hHHhHHHHHHHHHHc-C---CCcEEe
Confidence 333333444444444 3 356554
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.02 E-value=0.34 Score=31.30 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=46.8
Q ss_pred HHcCcccccccCCCCCCHHHHHHHcCCCCCCcchHHHHHHHHHhcCceeccccCCCCccceEecCccc
Q 017835 40 IQLGIPDIIHNHAKPMTLNQLLTTLQIHPTKTQCVYHLMRILVHSGFFALQKTSENEQEEGYILTSAS 107 (365)
Q Consensus 40 ~~lglf~~L~~~~~~~t~~~la~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 107 (365)
.+..|.+.|... ++.|+-.||+.+|++ ...-+.+.|-.|...|-+.+++.. +..|.++...
T Consensus 6 ~eekI~~~L~~~-g~~~Al~iak~lGl~--kakeVN~~LY~L~k~g~v~k~~~t----PP~W~L~~~~ 66 (73)
T d1xmka1 6 IKEKICDYLFNV-SDSSALNLAKNIGLT--KARDINAVLIDMERQGDVYRQGTT----PPIWHLTDKK 66 (73)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCGG--GHHHHHHHHHHHHHTTSEEEECSS----SCEEEECHHH
T ss_pred HHHHHHHHHHHc-CCchHHHHHHHhCCC--cHHHHhHHHHHHHHCCCeecCCCC----CCceeeecch
Confidence 355667777764 799999999999994 123599999999999999987632 5578887644
|