Citrus Sinensis ID: 017840

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----

MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKVP

cccEEEEEccccccEEccEEEEEEEEEccccccccccccccccccccccEEEEEEEccccccEEEEccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHcccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEcccHHHHHHHccccc

ccEEEEEEccccccEEEEEEEEEEEEEccccccccccccccccccccEEEEEEEEEcccccEEEEcccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEcccHHHccEEEEEEEEcccccccccHHHHHHccccccccccccccccEEEEcccccccccccccccccccccEEEEEEHHHHHHHHccHHHcccccHHHHcHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHccccEEEccccccccccHHHcccccEEEEcccHHHHHHHHcccc

MLSVLRvhlpsdipivgceltpyvllrrpdnavttedvpesapidghflRYKWYRiqsdrkvavcsvhpseqatLQCLGcvkakipvaksyhcspkcfsdawQHHRVLHDRAASavnengneeeELFGRfnstgsgvinaslsgsasnssltngstplypaavtrsggetwfevgrsktytpsaddigHVLKFECVVvdaetklpvghpntlltsrvipapspsprrlfpvngsdmnmmghidsdgrisstgTFSVLSYNILSDVyatsesysycpswaLSWAYRRQNLLREIIGYRADIVCLQEvqndhfeeffapeldkhgyqaLYKRKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKVP

MLSVLRVHlpsdipivgceLTPYVLLRRPDNavttedvpesapidghfLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTytpsaddigHVLKFECVVVDAEtklpvghpntlltsrvipapspspRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSltdailpsaqkknalnrlvkvp

MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVnengneeeeLFGRFNSTGSGVINaslsgsasnssltngstPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKVP

***VLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDR*************************************************AAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTS********************************ISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEF****************************

**SVLRVHLPSDIPIVGCELTPYVLLRRPDNAVT*******APIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD*********GNEEEELFGRFNSTGSGVINAS******************PAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDM****************TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKV*

MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLS*********NGSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKVP

MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVN*************************************STPLYPAA**RSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGS**************SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN*VEFNK**QSLTDAILPSAQKKNALNRLVKVP

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		365	2.2.26 [Sep-21-2011]
Q9M2F8		603	Carbon catabolite repress	yes	no	0.980	0.593	0.674	1e-153
Q8W0Z9		602	Carbon catabolite repress	no	no	0.969	0.588	0.682	1e-152
P31384		837	Glucose-repressible alcoh	yes	no	0.216	0.094	0.544	3e-20
Q75BI3		736	Glucose-repressible alcoh	yes	no	0.298	0.148	0.404	4e-20
Q6FRT2		873	Glucose-repressible alcoh	yes	no	0.219	0.091	0.525	6e-20
O74874		690	Glucose-repressible alcoh	yes	no	0.257	0.136	0.425	6e-20
Q5BJ41		552	CCR4-NOT transcription co	N/A	no	0.306	0.202	0.373	1e-18
Q9ULM6		557	CCR4-NOT transcription co	yes	no	0.295	0.193	0.386	1e-18
Q6AXU9		557	CCR4-NOT transcription co	yes	no	0.295	0.193	0.378	1e-18
Q8K3P5		557	CCR4-NOT transcription co	yes	no	0.295	0.193	0.378	1e-18

>sp\|Q9M2F8\|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2	Back alignment and function desciption

 Score =  540 bits (1391), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/393 (67%), Positives = 308/393 (78%), Gaps = 35/393 (8%)

Query: 1   MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
           MLSV+RVHLPS+IPIVGCELTPYVL+RRPD   TT+DVPESAP++G+FLRY+WYR+QSD+
Sbjct: 1   MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNSTTDDVPESAPLEGYFLRYRWYRVQSDK 60

Query: 61  KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG 120
           KV +CSVHP+EQATLQC+ C K +  V KSYHCSPKCF+DAWQHHR LH+RAA+    N 
Sbjct: 61  KVTICSVHPTEQATLQCVFCSKRRSLVPKSYHCSPKCFTDAWQHHRTLHERAAA--ENNA 118

Query: 121 NEEEELFGRFNSTGSGVINASLSGSASNSSL-TNGSTPLYPAAVT-RSGGETWFEVGRSK 178
           NE+++L  R NS GSG +  SLSGS SN S+  NG  P YP+ +T ++GGET  EVG  K
Sbjct: 119 NEDDDL-NRNNSAGSGSLAGSLSGSMSNLSIANNGPAPFYPSNITQKNGGETLVEVGGCK 177

Query: 179 TYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNM 238
           TYTP+ADDI HVLKFECVV +AETK  VGHP+T+LTSRVIPAPSPSPR+L PVNG+D   
Sbjct: 178 TYTPTADDISHVLKFECVVANAETKQIVGHPSTILTSRVIPAPSPSPRKLIPVNGADG-- 235

Query: 239 MGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA 298
           MGH+D D RI S G+F+VLSYNILSD  A+S+ YSYCP WALSW YRRQNLLREI+GYRA
Sbjct: 236 MGHLDQDARIQSAGSFTVLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRA 295

Query: 299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEV----------------------- 335
           D+VCLQEVQ+DHF E FAPELDKHGYQALYKRKTNEV                       
Sbjct: 296 DVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHV 355

Query: 336 -----EFNKAAQSLTDAILPSAQKKNALNRLVK 363
                EFNKAAQSLTDA++P AQK+ ALNRLVK
Sbjct: 356 KKYDVEFNKAAQSLTDALIPQAQKRTALNRLVK 388

Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: 4

>sp\|Q8W0Z9\|CCR4A_ARATH Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1	Back alignment and function description

>sp\|P31384\|CCR4_YEAST Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCR4 PE=1 SV=2	Back alignment and function description

>sp\|Q75BI3\|CCR4_ASHGO Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CCR4 PE=3 SV=1	Back alignment and function description

>sp\|Q6FRT2\|CCR4_CANGA Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CCR4 PE=3 SV=1	Back alignment and function description

>sp\|O74874\|CCR4_SCHPO Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ccr4 PE=3 SV=1	Back alignment and function description

>sp\|Q5BJ41\|CNOT6_XENLA CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1	Back alignment and function description

>sp\|Q9ULM6\|CNOT6_HUMAN CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2	Back alignment and function description

>sp\|Q6AXU9\|CNOT6_RAT CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1	Back alignment and function description

>sp\|Q8K3P5\|CNOT6_MOUSE CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		365
255580696		603	carbon catabolite repressor protein, put	0.989	0.598	0.834	0.0
224139930		603	predicted protein [Populus trichocarpa]	0.989	0.598	0.823	1e-177
224088166		602	predicted protein [Populus trichocarpa]	0.989	0.599	0.820	1e-176
225441541		603	PREDICTED: carbon catabolite repressor p	0.989	0.598	0.821	1e-173
147789110		603	hypothetical protein VITISV_044263 [Viti	0.989	0.598	0.818	1e-173
356572657		600	PREDICTED: carbon catabolite repressor p	0.980	0.596	0.770	1e-167
449457289		608	PREDICTED: LOW QUALITY PROTEIN: carbon c	0.989	0.593	0.752	1e-167
449480842		603	PREDICTED: carbon catabolite repressor p	0.989	0.598	0.752	1e-167
356505479		602	PREDICTED: carbon catabolite repressor p	0.980	0.594	0.771	1e-167
356530679		600	PREDICTED: carbon catabolite repressor p	0.980	0.596	0.752	1e-162

>gi\|255580696\|ref\|XP_002531170.1\| carbon catabolite repressor protein, putative [Ricinus communis] gi\|223529240\|gb\|EEF31213.1\| carbon catabolite repressor protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/392 (83%), Positives = 350/392 (89%), Gaps = 31/392 (7%)

Query: 1   MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
           MLSV+RVHLPSDIPIVGCELTPYVLLRRPD AVTT+DVPESAP+DGHFLRYKWYRIQSDR
Sbjct: 1   MLSVIRVHLPSDIPIVGCELTPYVLLRRPDKAVTTDDVPESAPLDGHFLRYKWYRIQSDR 60

Query: 61  KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG 120
           KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCS KCFSDAWQHHRVLHDRAASAV+ENG
Sbjct: 61  KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSTKCFSDAWQHHRVLHDRAASAVSENG 120

Query: 121 NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVT-RSGGETWFEVGRSKT 179
           N+EEE+FGRFNSTGSGV+N SLS SAS +SLTNGS PLYPAAV  RSGGETWFEVGRSKT
Sbjct: 121 NDEEEVFGRFNSTGSGVLNTSLSSSASTASLTNGSAPLYPAAVAQRSGGETWFEVGRSKT 180

Query: 180 YTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMM 239
           YTPSADDIGHVLKFECVVVDAE+KLPVGHPNT+LTSRVIPAPSP+PRRL PV+G D+  M
Sbjct: 181 YTPSADDIGHVLKFECVVVDAESKLPVGHPNTILTSRVIPAPSPTPRRLIPVSGIDV--M 238

Query: 240 GHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRAD 299
           GH+DSDGRISS+GTF+VLSYNILSDVYATSE+YSYCPSWALSW YRRQNLLREI+GYRAD
Sbjct: 239 GHLDSDGRISSSGTFTVLSYNILSDVYATSETYSYCPSWALSWPYRRQNLLREIVGYRAD 298

Query: 300 IVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEV------------------------ 335
           IVCLQEVQNDH+EEFFAPELDKHGYQALYKRKTNEV                        
Sbjct: 299 IVCLQEVQNDHYEEFFAPELDKHGYQALYKRKTNEVYSGNSPTIDGCATFFRRDRFSHVK 358

Query: 336 ----EFNKAAQSLTDAILPSAQKKNALNRLVK 363
               EFNKAAQSLT+A++PSAQ+K ALNRLVK
Sbjct: 359 KYEVEFNKAAQSLTEAVVPSAQRKTALNRLVK 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224139930\|ref\|XP_002323345.1\| predicted protein [Populus trichocarpa] gi\|118486421\|gb\|ABK95050.1\| unknown [Populus trichocarpa] gi\|222867975\|gb\|EEF05106.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224088166\|ref\|XP_002308351.1\| predicted protein [Populus trichocarpa] gi\|222854327\|gb\|EEE91874.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225441541\|ref\|XP_002280990.1\| PREDICTED: carbon catabolite repressor protein 4 homolog 1 [Vitis vinifera] gi\|297739794\|emb\|CBI29976.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147789110\|emb\|CAN73496.1\| hypothetical protein VITISV_044263 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356572657\|ref\|XP_003554483.1\| PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449457289\|ref\|XP_004146381.1\| PREDICTED: LOW QUALITY PROTEIN: carbon catabolite repressor protein 4 homolog 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449480842\|ref\|XP_004156011.1\| PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505479\|ref\|XP_003521518.1\| PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356530679\|ref\|XP_003533908.1\| PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		365
TAIR\|locus:2076426		602	AT3G58560 "AT3G58560" [Arabido	0.893	0.541	0.695	8.2e-138
TAIR\|locus:2076446		603	AT3G58580 "AT3G58580" [Arabido	0.904	0.547	0.676	1.2e-134
SGD\|S000000019		837	CCR4 "Component of the CCR4-NO	0.304	0.132	0.427	1.2e-18
WB\|WBGene00000376		677	ccr-4 [Caenorhabditis elegans	0.290	0.156	0.412	3.7e-18
POMBASE\|SPCC31H12.08c		690	ccr4 "CCR4-Not complex subunit	0.254	0.134	0.430	3.9e-18
FB\|FBgn0011725		567	twin "twin" [Drosophila melano	0.276	0.178	0.417	1.8e-17
ZFIN\|ZDB-GENE-071004-97		558	zgc:171797 "zgc:171797" [Danio	0.312	0.204	0.370	3.4e-17
UNIPROTKB\|E1C678		557	CNOT6 "Uncharacterized protein	0.235	0.154	0.453	1.5e-16
UNIPROTKB\|Q9ULM6		557	CNOT6 "CCR4-NOT transcription	0.235	0.154	0.465	1.5e-16
UNIPROTKB\|Q5BJ41		552	cnot6 "CCR4-NOT transcription	0.235	0.155	0.453	2e-16

TAIR\|locus:2076426 AT3G58560 "AT3G58560" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1240 (441.6 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
 Identities = 235/338 (69%), Positives = 272/338 (80%)

Query:     1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
             MLSV+RVHLPS+IPIVGCELTPYVLLRRPD   +T+DVPESAP++GHFL+Y+W+R+QSD+
Sbjct:     1 MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYRWFRVQSDK 60

Query:    61 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXX 120
             KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAASA     
Sbjct:    61 KVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATEGN 120

Query:   121 XXXXXLFGRFNSTGSGVINXXXXXXXXXXXXXXXXXPLYPAAVTR---SGGETWFEVGRS 177
                     R NS+GSG                     +YP+A+T+   +GGET  EVGRS
Sbjct:   121 DEEE--LPRLNSSGSG-----SGVLSTSVSLTNGSSSVYPSAITQKTGAGGETLVEVGRS 173

Query:   178 KTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237
             KTYTP ADDI HVLKFECVVV+AETK  VG   T+LTSRVIPAPSPSPRRL  ++G+D+ 
Sbjct:   174 KTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLISISGTDVT 233

Query:   238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
               GH+DS+GR  S GTF+VLSYNILSD YA+S+ YSYCP+WAL+W YRRQNLLREI+ YR
Sbjct:   234 --GHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLLREIVKYR 291

Query:   298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEV 335
             ADIVCLQEVQNDHFEEFF PELDKHGYQ L+KRKTNEV
Sbjct:   292 ADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEV 329

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

TAIR\|locus:2076446 AT3G58580 "AT3G58580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

SGD\|S000000019 CCR4 "Component of the CCR4-NOT transcriptional complex" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

WB\|WBGene00000376 ccr-4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

POMBASE\|SPCC31H12.08c ccr4 "CCR4-Not complex subunit Ccr4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

FB\|FBgn0011725 twin "twin" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-071004-97 zgc:171797 "zgc:171797" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C678 CNOT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9ULM6 CNOT6 "CCR4-NOT transcription complex subunit 6" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5BJ41 cnot6 "CCR4-NOT transcription complex subunit 6" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.13.4	0.914
3rd Layer	3.1.13	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		365
PLN03144		606	PLN03144, PLN03144, Carbon catabolite repressor pr	0.0
cd09097		329	cd09097, Deadenylase_CCR4, C-terminal deadenylase	3e-49
COG5239		378	COG5239, CCR4, mRNA deadenylase, exonuclease subun	1e-23
cd10313		350	cd10313, Deadenylase_CCR4a, C-terminal deadenylase	1e-20
cd10312		348	cd10312, Deadenylase_CCR4b, C-terminal deadenylase	1e-19
cd09096		280	cd09096, Deadenylase_nocturnin, C-terminal deadeny	3e-11
cd09082		348	cd09082, Deadenylase, C-terminal deadenylase domai	3e-11
PLN03158		396	PLN03158, PLN03158, methionine aminopeptidase; Pro	2e-04
cd09083		252	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata	0.003

>gnl\|CDD\|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog; Provisional	Back alignment and domain information

 Score =  694 bits (1794), Expect = 0.0
 Identities = 300/394 (76%), Positives = 337/394 (85%), Gaps = 33/394 (8%)

Query: 1   MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
           MLSV+RVHLPSDIPIVGCELTPYVLLRRPD  +TT+DVPESAP+DG+FLRY+WYRIQSDR
Sbjct: 1   MLSVVRVHLPSDIPIVGCELTPYVLLRRPDGTLTTDDVPESAPLDGYFLRYRWYRIQSDR 60

Query: 61  KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG 120
           KVAVCSVHPSE ATLQC+GCVKAK+PV+KSYHCSPKCFSDAW+HHRVLH+RAASAV ENG
Sbjct: 61  KVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAASAVRENG 120

Query: 121 NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAV---TRSGGETWFEVGRS 177
           NEE+ELFGRFNS+GSGV++ S SGSAS++SLTNGS PLYP+ +   T+ GGETW EVGRS
Sbjct: 121 NEEDELFGRFNSSGSGVLSTSDSGSASSASLTNGSVPLYPSGIEQKTQVGGETWIEVGRS 180

Query: 178 KTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237
           KTYTP+ADD+GHVLKFECVVVDAET LPVGHP ++LTSRVIPAPSP+PRRL  VNG D  
Sbjct: 181 KTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILTSRVIPAPSPTPRRLIQVNGLDG- 239

Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
            MGH+D DGR SS GTF+VLSYNILSD+YATS+ YSYCP WALSW YRRQNLLREI+GYR
Sbjct: 240 -MGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYR 298

Query: 298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN------------------------ 333
           ADI+CLQEVQ+DHFEEFFAPELDKHGYQALYK+KT                         
Sbjct: 299 ADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSL 358

Query: 334 ----EVEFNKAAQSLTDAILPSAQKKNALNRLVK 363
               EVEFNKAAQSLT+A++PSAQKK ALNRL+K
Sbjct: 359 VKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLK 392

Length = 606

>gnl\|CDD\|197331 cd09097, Deadenylase_CCR4, C-terminal deadenylase domain of CCR4 and related domains	Back alignment and domain information

>gnl\|CDD\|227564 COG5239, CCR4, mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|197340 cd10313, Deadenylase_CCR4a, C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6	Back alignment and domain information

>gnl\|CDD\|197339 cd10312, Deadenylase_CCR4b, C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like	Back alignment and domain information

>gnl\|CDD\|197330 cd09096, Deadenylase_nocturnin, C-terminal deadenylase domain of nocturnin and related domains	Back alignment and domain information

>gnl\|CDD\|197316 cd09082, Deadenylase, C-terminal deadenylase domain of CCR4, nocturnin, and related domains	Back alignment and domain information

>gnl\|CDD\|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional	Back alignment and domain information

>gnl\|CDD\|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		365
PLN03144		606	Carbon catabolite repressor protein 4 homolog; Pro	100.0
KOG2738		369	consensus Putative methionine aminopeptidase [Post	99.97
PLN03158		396	methionine aminopeptidase; Provisional	99.93
COG5239		378	CCR4 mRNA deadenylase, exonuclease subunit and rel	99.91
KOG2338		495	consensus Transcriptional effector CCR4-related pr	99.79
KOG0620		361	consensus Glucose-repressible alcohol dehydrogenas	99.78
smart00476		276	DNaseIc deoxyribonuclease I. Deoxyribonuclease I c	98.76
TIGR03395		283	sphingomy sphingomyelin phosphodiesterase. Members	98.4
PRK11756		268	exonuclease III; Provisional	98.2
PF03372		249	Exo_endo_phos: Endonuclease/Exonuclease/phosphatas	97.97
TIGR00195		254	exoDNase_III exodeoxyribonuclease III. The model b	97.91
TIGR00633		255	xth exodeoxyribonuclease III (xth). This family is	97.89
PRK05421		263	hypothetical protein; Provisional	97.58
COG0708		261	XthA Exonuclease III [DNA replication, recombinati	97.33
KOG2756		349	consensus Predicted Mg2+-dependent phosphodiestera	97.3
COG3568		259	ElsH Metal-dependent hydrolase [General function p	97.25
PF01753		37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	96.77
PTZ00297		1452	pantothenate kinase; Provisional	96.74
PRK13911		250	exodeoxyribonuclease III; Provisional	96.52
KOG1710		396	consensus MYND Zn-finger and ankyrin repeat protei	90.91
COG2374		798	Predicted extracellular nuclease [General function	81.59

>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.1e-97  Score=772.90  Aligned_cols=361  Identities=80%  Similarity=1.324  Sum_probs=326.9

Q ss_pred             CccEEEEecCCCCceeceeeceEEEEecCCCCCCCCCCCCCCCCCCceeEEEEeeecCCcccccccCCCCcccccccchh
Q 017840            1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGC   80 (365)
Q Consensus         1 ~~~~~~~~l~~~~Pi~gc~l~p~v~~r~~d~~~~~~~v~~~~~~~~~~~~~~w~r~~~~~~~~~C~~~c~~~a~lqCp~C   80 (365)
                      ||+|||||||+|||||||||+|||++||+||+++++||||++|++|+||||||||+|+++++++|++|++++|+||||+|
T Consensus         1 ~~~~~~~~l~~~~pi~g~~~~p~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~w~r~~~~~~~~~c~~h~~~~a~lqCp~C   80 (606)
T PLN03144          1 MLSVVRVHLPSDIPIVGCELTPYVLLRRPDGTLTTDDVPESAPLDGYFLRYRWYRIQSDRKVAVCSVHPSEPATLQCVGC   80 (606)
T ss_pred             CeeEEEEEcCCCCCeeeeeeEEEEEEEcCCCCcCcccCcccCCCCcceEEEEEEecCCCccceeEeecCCCcccccCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCcceecChhhhhHhHHHHHHhhhhhhcccccCCCCccccccCCCcCCCcccccccCCCccccccCCCCccccC
Q 017840           81 VKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYP  160 (365)
Q Consensus        81 ~k~~~~~~~s~fCsq~CFk~~W~~Hk~~H~~~~~~~~~~~~~~~~~f~~f~~tg~~rp~r~vpg~~se~~~~~~~i~~~~  160 (365)
                      +|+||++..||||||+|||++|++||.+|+.++++..+++++++++|++|+.+|++--.....|..++.+..++++++++
T Consensus        81 ~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (606)
T PLN03144         81 VKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAASAVRENGNEEDELFGRFNSSGSGVLSTSDSGSASSASLTNGSVPLYP  160 (606)
T ss_pred             hhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhhhhhcccCccccccccccCCCccccccccccccccccccccCcccccc
Confidence            99999878899999999999999999999999877788999999999999999986433222233344445778888888


Q ss_pred             ccc--ccCCC-cceeEeccceecCCChhccCcEEEEEEEeecCCCCCCCCCcceeeeccccCCCCCCCCceeeeCCCCCC
Q 017840          161 AAV--TRSGG-ETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN  237 (365)
Q Consensus       161 ~~~--~~~~g-e~w~~vg~~~~YtPt~eDIG~llklecl~~dg~~~~plg~~~sv~Ts~Vip~P~P~~R~~i~~~~~~~~  237 (365)
                      ...  .+..| ++|++||++++||||+||||+.|+|||+++++..+.+.+.+.+++|++|+++|.|++|+|+++..  .+
T Consensus       161 ~~~~~~~~~~~~~w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~~~~~~t~~v~~~p~p~~R~~~~~~~--~~  238 (606)
T PLN03144        161 SGIEQKTQVGGETWIEVGRSKTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILTSRVIPAPSPTPRRLIQVNG--LD  238 (606)
T ss_pred             cccccccCCCCCceEEeCCCccccCChhhCCceEEEEEEEcccccCCCCccceeecccceecCCCCCCcceEEecc--cc
Confidence            763  33334 99999999999999999999999999999999877788888999999999999999999999875  34


Q ss_pred             cccccCCCCCCCCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHh
Q 017840          238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAP  317 (365)
Q Consensus       238 ~~~~~~~~~~~~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~  317 (365)
                      .++|++++++..+.++|||||||||||.|+++++|+|||+++|+|+||+++|++||..|+|||||||||+.++|++||.+
T Consensus       239 ~~~~~~~~~~~~~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p  318 (606)
T PLN03144        239 GMGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAP  318 (606)
T ss_pred             cccccccccccCCCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHh
Confidence            46778888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCceEEEeccCCe-------------EEEecccccccccc---------------CCChhhHhhhccccc
Q 017840          318 ELDKHGYQALYKRKTNE-------------VEFNKAAQSLTDAI---------------LPSAQKKNALNRLVK  363 (365)
Q Consensus       318 ~L~~~gY~g~~~~K~g~-------------i~fn~~~~~l~e~~---------------~~~~~~~~~~~r~~~  363 (365)
                      .|.++||.|+|.+|+++             |||++++|++++..               .++.+|+++++||||
T Consensus       319 ~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~k  392 (606)
T PLN03144        319 ELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLK  392 (606)
T ss_pred             hhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhcc
Confidence            99999999999988641             99999999999752               356679999999875

>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03158 methionine aminopeptidase; Provisional	Back alignment and domain information

>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]	Back alignment and domain information

>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]	Back alignment and domain information

>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]	Back alignment and domain information

>smart00476 DNaseIc deoxyribonuclease I	Back alignment and domain information

>TIGR03395 sphingomy sphingomyelin phosphodiesterase	Back alignment and domain information

>PRK11756 exonuclease III; Provisional	Back alignment and domain information

>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []	Back alignment and domain information

>TIGR00195 exoDNase_III exodeoxyribonuclease III	Back alignment and domain information

>TIGR00633 xth exodeoxyribonuclease III (xth)	Back alignment and domain information

>PRK05421 hypothetical protein; Provisional	Back alignment and domain information

>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]	Back alignment and domain information

>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]	Back alignment and domain information

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>PRK13911 exodeoxyribonuclease III; Provisional	Back alignment and domain information

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>COG2374 Predicted extracellular nuclease [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		365
4b8c_D		727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		4e-21
3ngq_A		398	Crystal Structure Of The Human Cnot6l Nuclease Doma		2e-18
3ngn_A		398	Crystal Structure Of The Human Cnot6l Nuclease Doma		2e-18

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Back alignment and structure

Iteration: 1

Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 43/79 (54%), Positives = 56/79 (70%) Query: 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFE 312 TF+VLSYN L YAT + Y Y PSWALSW YRR L +I+ Y +D++CLQEV++ FE Sbjct: 394 TFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFE 453 Query: 313 EFFAPELDKHGYQALYKRK 331 E++ P LDKHGY ++ K Sbjct: 454 EYWVPLLDKHGYTGIFHAK 472

PyMOL of 4b8c

>pdb|3NGQ|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain Length = 398

Back alignment and structure

>pdb|3NGN|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain In Complex With Amp Length = 398

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		365
3ngq_A		398	CCR4-NOT transcription complex subunit 6-like; alp	3e-31
3mpr_A		298	Putative endonuclease/exonuclease/phosphatase FAM	6e-15
3g6s_A		267	Putative endonuclease/exonuclease/phosphatase fami	2e-12
3l1w_A		257	Uncharacterized protein; APC29019.2, conserved pro	4e-10
2ddr_A		306	Sphingomyelin phosphodiesterase; DNAse I like fold	7e-07
1zwx_A		301	SMCL, sphingomyelinase-C; dnase1-like fold, beta-h	8e-07
3i41_A		317	Beta-hemolysin; beta toxin, sphingomyelinase, toxi	3e-06
3teb_A		266	Endonuclease/exonuclease/phosphatase; PSI-biology,	3e-04

>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Length = 398	Back alignment and structure

 Score =  121 bits (303), Expect = 3e-31
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 11/135 (8%)

Query: 212 LLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES 271
           +L +  +      PR               +    +I  + +F+V+ YN+L D YAT + 
Sbjct: 1   MLDNLAVHPEQLPPRPWIT-----------LKERDQILPSASFTVMCYNVLCDKYATRQL 49

Query: 272 YSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
           Y YCPSWAL+W YR++ ++ EI+   ADI+ LQEV+ + +   F P L + GY   +  K
Sbjct: 50  YGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPK 109

Query: 332 TNEVEFNKAAQSLTD 346
           +     ++  +   D
Sbjct: 110 SRAKIMSEQERKHVD 124

PyMOL of 3ngq

>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298	Back alignment and structure

>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267	Back alignment and structure

>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257	Back alignment and structure

>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306	Back alignment and structure

>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301	Back alignment and structure

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317	Back alignment and structure

>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		365
3ngq_A		398	CCR4-NOT transcription complex subunit 6-like; alp	99.93
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	99.63
3mpr_A		298	Putative endonuclease/exonuclease/phosphatase FAM	99.3
3l1w_A		257	Uncharacterized protein; APC29019.2, conserved pro	99.25
3g6s_A		267	Putative endonuclease/exonuclease/phosphatase fami	99.25
4f1h_A		250	Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com	99.04
4gz1_A		256	Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl	98.98
4fva_A		256	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	98.79
4gew_A		362	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	98.65
2jc4_A		256	Exodeoxyribonuclease III; hydrolase, repair phosph	98.65
3teb_A		266	Endonuclease/exonuclease/phosphatase; PSI-biology,	98.63
3i41_A		317	Beta-hemolysin; beta toxin, sphingomyelinase, toxi	98.63
1ako_A		268	Exonuclease III; AP-endonuclease, DNA repair; 1.70	98.57
1zwx_A		301	SMCL, sphingomyelinase-C; dnase1-like fold, beta-h	98.43
1vyb_A		238	ORF2 contains A reverse transcriptase domain; endo	98.38
2voa_A		257	AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP	98.37
2ddr_A		306	Sphingomyelin phosphodiesterase; DNAse I like fold	98.25
2a40_B		260	Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse	98.23
2jc5_A		259	Exodeoxyribonuclease; hydrolase, repair phosphodie	98.19
2o3h_A		285	DNA-(apurinic or apyrimidinic site) lyase; APE, en	98.12
3g91_A		265	MTH0212, exodeoxyribonuclease; double-strand speci	98.06
1hd7_A		318	DNA-(apurinic or apyrimidinic site) lyase; DNA rep	98.05
1wdu_A		245	TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA	97.95
2j63_A		467	AP-endonuclease; base excision repair, lyase; 2.48	97.92
2imq_X		282	Salivary nitrophorin; ferrous heme, beta-sandwich,	97.41
3s6b_A		368	Methionine aminopeptidase; malaria, proteolysis, "	97.18
2ei9_A		240	Non-LTR retrotransposon R1BMKS ORF2 protein; four	96.94
1sr4_B		261	CDT B, cytolethal distending toxin protein B; bact	96.66
2b3h_A		329	Methionine aminopeptidase 1; hydrolase, metallopro	96.5
4fuk_A		337	Methionine aminopeptidase; structural genomics con	96.29
2f1n_A		262	CDT B, cytolethal distending toxin subunit B; E.co	95.71
2od1_A		60	Protein CBFA2T1; zinc finger, cross-braced topolog	95.14
2dj8_A		60	Protein CBFA2T1; zinc finger MYND domain, protein	95.06
2jw6_A		52	Deformed epidermal autoregulatory factor 1 homolo;	94.97
2odd_A		64	Protein CBFA2T1; MYND zinc finger, cross-braced to	94.78
2d8q_A		70	BLU protein, zinc finger MYND domain containing pr	94.6
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	89.64
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	89.46
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	86.29
1i9z_A		347	Synaptojanin, phosphatidylinositol phosphate phosp	86.0
2xsw_A		357	72 kDa inositol polyphosphate 5-phosphatase; inosi	84.75

>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A	Back alignment and structure

Probab=99.93  E-value=3.7e-26  Score=229.17  Aligned_cols=134  Identities=33%  Similarity=0.697  Sum_probs=113.7

Q ss_pred             CCCCCCCCceeeeCCCCCCcccccCCCCCCCCCCceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCC
Q 017840          219 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA  298 (365)
Q Consensus       219 p~P~P~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~a  298 (365)
                      +.|.|++|.|+.+...           ....+...|||||||||+|.|+++++|+|||++.++|.+|++.|+++|..++|
T Consensus         8 ~~~~p~~R~wi~~~~~-----------~~~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~p   76 (398)
T 3ngq_A            8 HPEQLPPRPWITLKER-----------DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDA   76 (398)
T ss_dssp             ----CCCCCEEECSCC-----------C--CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCcceECCCC-----------CCCCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCC
Confidence            4567788999998742           12234568999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeccChhhHHHHHHhhhhcCCceEEEeccC------------Ce---EEEecccccccccc---------CCChhh
Q 017840          299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT------------NE---VEFNKAAQSLTDAI---------LPSAQK  354 (365)
Q Consensus       299 DIiCLQEV~~~~~~~~~~~~L~~~gY~g~~~~K~------------g~---i~fn~~~~~l~e~~---------~~~~~~  354 (365)
                      ||||||||+.++|.+++.+.|..+||.++|..|+            ++   |||++++|+++++.         .++.+|
T Consensus        77 DIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~  156 (398)
T 3ngq_A           77 DIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGS  156 (398)
T ss_dssp             SEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTC
T ss_pred             CEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccc
Confidence            9999999999899888899999999999997553            23   99999999999876         346789


Q ss_pred             Hhhhccccc
Q 017840          355 KNALNRLVK  363 (365)
Q Consensus       355 ~~~~~r~~~  363 (365)
                      +++++|+|+
T Consensus       157 ~~~~~Ri~t  165 (398)
T 3ngq_A          157 EAMLNRVMT  165 (398)
T ss_dssp             HHHHHTTTT
T ss_pred             hhhhcceee
Confidence            999999986

PyMOL of 3ngq

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}	Back alignment and structure

>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*	Back alignment and structure

>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*	Back alignment and structure

>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}	Back alignment and structure

>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A	Back alignment and structure

>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}	Back alignment and structure

>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}	Back alignment and structure

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A	Back alignment and structure

>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1	Back alignment and structure

>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3	Back alignment and structure

>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A	Back alignment and structure

>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}	Back alignment and structure

>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X	Back alignment and structure

>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*	Back alignment and structure

>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}	Back alignment and structure

>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A	Back alignment and structure

>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A	Back alignment and structure

>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A	Back alignment and structure

>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1	Back alignment and structure

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}	Back alignment and structure

>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*	Back alignment and structure

>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum}	Back alignment and structure

>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}	Back alignment and structure

>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B	Back alignment and structure

>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*	Back alignment and structure

>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei}	Back alignment and structure

>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1	Back alignment and structure

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1	Back alignment and structure

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1	Back alignment and structure

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*	Back alignment and structure

>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		365
d1zwxa1		293	d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera	4e-08
d2ddra1		299	d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras	1e-07
d1sr4b_		261	d.151.1.1 (B:) Cytolethal distending toxin subunit	0.002

>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

 Score = 51.9 bits (122), Expect = 4e-08
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF 311
           G F + S+N+         S +  P+W     +R   + +       D+V L E  +   
Sbjct: 3   GNFKITSHNVYLF------SRNIYPNW--GQMHRADLIAQADYMKNNDVVILNEAFDTSA 54

Query: 312 EEFFAPELDKHGYQALYKRKTNEVEFNK 339
                  L +           ++  ++K
Sbjct: 55  SHRLLNNLREMYPHQTPVIGRSKHGWDK 82

PyMOL of d1zwxa1

>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299	Back information, alignment and structure

>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		365
d2ddra1		299	Sphingomyelin phosphodiesterase C {Bacillus cereus	98.84
d1zwxa1		293	Sphingomyelin phosphodiesterase C {Listeria ivanov	98.76
d1akoa_		268	DNA-repair enzyme exonuclease III {Escherichia col	98.45
d1vyba_		236	Endonuclease domain of LINE-1 reverse transcriptas	98.21
d2a40b1		260	Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913	98.1
d1hd7a_		275	DNA repair endonuclease Hap1 {Human (Homo sapiens)	98.01
d1sr4b_		261	Cytolethal distending toxin subunit B {Haemophilus	97.98
d2f1na1		250	Cytolethal distending toxin subunit B {Escherichia	97.53
d2imqx1		280	Salivary nitrophorin {Bedbug (Cimex lectularius) [	97.49
d1wdua_		228	Endonuclease domain of TRAS1 retrotransposon (ORF2	97.41
d2dj8a1		47	Zinc finger MYND domain-containing protein 2, MTG8	97.04
d2dana1		47	Zinc finger MYND domain-containing protein 10, ZMY	96.98
d2jw6a1		38	Zinc finger MYND domain-containing protein 2, MTG8	96.95
d1i9za_		345	Synaptojanin, IPP5C domain {Fission yeast (Schizos	83.46

>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Bacillus cereus [TaxId: 1396]

Probab=98.84  E-value=1.4e-09  Score=96.75  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             CceEEEeeccccCcccCCCCCCCCCCccCChHHHHHHHHHHHhhcCCcEEEEeccChhhHHHHHHhhhh-cCCce
Q 017840          252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQ  325 (365)
Q Consensus       252 ~~frVmSYNILa~~ya~~~~f~y~p~~~l~w~~R~~~Il~eI~~~~aDIiCLQEV~~~~~~~~~~~~L~-~~gY~  325 (365)
                      ++||||||||..   .....|+     ...|..|+++|.++|...+|||||||||......+.+...|. .++|.
T Consensus         2 ~tl~v~s~Nv~~---~~~~~~~-----~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~l~~~~~~~   68 (299)
T d2ddra1           2 DTLKVMTHNVYM---LSTNLYP-----NWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQ   68 (299)
T ss_dssp             CEEEEEEEEEEE---CCTTTCT-----TSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEE
T ss_pred             CceEEEEEECCc---cccccCC-----CcCHHHHHHHHHHHHHhcCCCEEEEEccCCcchHHHHHHHHHHhcCce
Confidence            689999999963   1122222     223789999999999999999999999976655555555554 44443

PyMOL of d2ddra1

>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}	Back information, alignment and structure

>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}	Back information, alignment and structure

>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}	Back information, alignment and structure

>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}	Back information, alignment and structure

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure